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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F087663 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 110 |
| Average Sequence Length | 52 residues |
| Representative Sequence | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQ |
| Number of Associated Samples | 83 |
| Number of Associated Scaffolds | 110 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 21.82 % |
| % of genes from short scaffolds (< 2000 bps) | 20.91 % |
| Associated GOLD sequencing projects | 77 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.12 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (80.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (46.364 % of family members) |
| Environment Ontology (ENVO) | Unclassified (60.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Unclassified (44.545 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.12 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 110 Family Scaffolds |
|---|---|---|
| PF02518 | HATPase_c | 45.45 |
| PF08240 | ADH_N | 3.64 |
| PF07690 | MFS_1 | 3.64 |
| PF14559 | TPR_19 | 2.73 |
| PF04392 | ABC_sub_bind | 1.82 |
| PF02538 | Hydantoinase_B | 1.82 |
| PF13185 | GAF_2 | 1.82 |
| PF13492 | GAF_3 | 0.91 |
| PF13358 | DDE_3 | 0.91 |
| PF10691 | DUF2497 | 0.91 |
| PF04075 | F420H2_quin_red | 0.91 |
| PF06808 | DctM | 0.91 |
| PF05638 | T6SS_HCP | 0.91 |
| PF00296 | Bac_luciferase | 0.91 |
| PF14347 | DUF4399 | 0.91 |
| PF08857 | ParBc_2 | 0.91 |
| PF07883 | Cupin_2 | 0.91 |
| COG ID | Name | Functional Category | % Frequency in 110 Family Scaffolds |
|---|---|---|---|
| COG0146 | N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit | Amino acid transport and metabolism [E] | 3.64 |
| COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 1.82 |
| COG2141 | Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) | Coenzyme transport and metabolism [H] | 0.91 |
| COG3157 | Type VI protein secretion system component Hcp (secreted cytotoxin) | Intracellular trafficking, secretion, and vesicular transport [U] | 0.91 |
| COG4318 | Uncharacterized conserved protein | Function unknown [S] | 0.91 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 80.00 % |
| All Organisms | root | All Organisms | 20.00 % |
| Visualization |
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| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300004281|Ga0066397_10065282 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 693 | Open in IMG/M |
| 3300005445|Ga0070708_100450292 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1214 | Open in IMG/M |
| 3300005764|Ga0066903_101746954 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1186 | Open in IMG/M |
| 3300006800|Ga0066660_10969822 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 686 | Open in IMG/M |
| 3300012209|Ga0137379_11600835 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 550 | Open in IMG/M |
| 3300012961|Ga0164302_10991565 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 654 | Open in IMG/M |
| 3300016357|Ga0182032_11731781 | Not Available | 545 | Open in IMG/M |
| 3300016387|Ga0182040_10044868 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2707 | Open in IMG/M |
| 3300016387|Ga0182040_10623217 | All Organisms → cellular organisms → Bacteria | 875 | Open in IMG/M |
| 3300019890|Ga0193728_1245409 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 721 | Open in IMG/M |
| 3300021168|Ga0210406_10326960 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1241 | Open in IMG/M |
| 3300021560|Ga0126371_11759938 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 742 | Open in IMG/M |
| 3300025906|Ga0207699_10258308 | All Organisms → cellular organisms → Bacteria | 1203 | Open in IMG/M |
| 3300028828|Ga0307312_10433203 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 865 | Open in IMG/M |
| 3300031543|Ga0318516_10188464 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium | 1189 | Open in IMG/M |
| 3300031543|Ga0318516_10435364 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 754 | Open in IMG/M |
| 3300031545|Ga0318541_10010105 | All Organisms → cellular organisms → Bacteria | 4211 | Open in IMG/M |
| 3300031545|Ga0318541_10772326 | Not Available | 536 | Open in IMG/M |
| 3300031765|Ga0318554_10821207 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 519 | Open in IMG/M |
| 3300031797|Ga0318550_10658766 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 502 | Open in IMG/M |
| 3300032055|Ga0318575_10056436 | Not Available | 1815 | Open in IMG/M |
| 3300032055|Ga0318575_10589902 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 563 | Open in IMG/M |
| 3300032059|Ga0318533_10696793 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 745 | Open in IMG/M |
| 3300032068|Ga0318553_10737314 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 515 | Open in IMG/M |
| 3300032261|Ga0306920_102795939 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 664 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 46.36% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 15.45% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 10.00% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 6.36% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 6.36% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 4.55% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.64% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.73% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.82% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.91% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.91% |
| Tropical Rainforest Soil | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil | 0.91% |
| Visualization |
|---|
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000580 | Forest soil microbial communities from Amazon forest - 2010 replicate II A01 | Environmental | Open in IMG/M |
| 3300000655 | Forest soil microbial communities from Amazon forest - 2010 replicate II A100 | Environmental | Open in IMG/M |
| 3300004281 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio | Environmental | Open in IMG/M |
| 3300004633 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005363 | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
| 3300010335 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012357 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012358 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG | Environmental | Open in IMG/M |
| 3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
| 3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
| 3300016387 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 | Environmental | Open in IMG/M |
| 3300019890 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1 | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026277 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026330 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes) | Environmental | Open in IMG/M |
| 3300026552 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes) | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031572 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031768 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031777 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24 | Environmental | Open in IMG/M |
| 3300031778 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031792 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
| 3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
| 3300031845 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 | Environmental | Open in IMG/M |
| 3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
| 3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
| 3300031896 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
| 3300032025 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 | Environmental | Open in IMG/M |
| 3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
| 3300032041 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 | Environmental | Open in IMG/M |
| 3300032042 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 | Environmental | Open in IMG/M |
| 3300032051 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26 | Environmental | Open in IMG/M |
| 3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032064 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
| 3300032089 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPhiseqgaiiFebDRAFT_1007355021 | 3300000364 | Soil | MARKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQP |
| AF_2010_repII_A01DRAFT_10426901 | 3300000580 | Forest Soil | MATKRSKRASNTSAARSKRKVRARAATTERKAQPGGVINAWEDDPGAGAQPSGGQ |
| AF_2010_repII_A100DRAFT_10559842 | 3300000655 | Forest Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGG |
| Ga0066397_100652821 | 3300004281 | Tropical Forest Soil | MARKRSKRASKTSAAKSKRRGKARAAATEARPKGVINAWEQDPGDGAQPSGGQVIQRPVP |
| Ga0066395_100548533 | 3300004633 | Tropical Forest Soil | MARKRSKRASKTSAAKSKRRGKARAAATEARPKGVINAWEQDPGDGAQPSGGQVIQR |
| Ga0066388_1002293053 | 3300005332 | Tropical Forest Soil | MATKRSKRASNTSAARSKRKVRARAATTERRAQPGGVINAWEDDPGAGA |
| Ga0066388_1017179411 | 3300005332 | Tropical Forest Soil | MARKRSKRTSKASAPRSKRKGKAGAAVPRRAQPTGVINAWEDDPGAGAQPS |
| Ga0008090_153994802 | 3300005363 | Tropical Rainforest Soil | MAKKRSKRAVKRSAARSGKRKARAVSTERAAQPKGVINGWEDDPGAGDRPSGGHEQCPEFS* |
| Ga0070708_1004502922 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MATKRSKRASKTSPARSGRRGKARAAVAEAKPKGVVNAWEQDPGDGAQPSGGQVIQR |
| Ga0070708_1020204901 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MARKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGG |
| Ga0070699_1006369092 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | LASKRSKRASKVSAAQSKRKGKARAAPPERSAAPEGVINAWED |
| Ga0066903_1017469542 | 3300005764 | Tropical Forest Soil | MAKKRSKRTSKTSGPRGKRKGKAGAAVPRRAQPKGAINAWEDDPGAGAQPSGGQVIQRP |
| Ga0066903_1025465191 | 3300005764 | Tropical Forest Soil | MATKRSKRASMKSAARSKRASKARGVPAERRAQARAVINAWEDDPGA |
| Ga0066903_1051891171 | 3300005764 | Tropical Forest Soil | MAKKRSKRTSKTAARRSKRKGKAGAAVPRRAQPKGAIN |
| Ga0070716_1001778173 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MAKKRSKRVLKRSAARSGRRKSRAVSTERGAQPKGMINAWEDDPGAGAQPSGGQVVQ |
| Ga0066660_109698221 | 3300006800 | Soil | MAKKRSKRAAKKSAVRSSRRKARAVSTQRGAQPKGVINGWEDDPGAGAQPSGGQVLQRPV |
| Ga0134063_104895011 | 3300010335 | Grasslands Soil | MSAMQKWRDAMAKKRSKRAAKKSAARSSRRKARAVSTQRGAVINGWEDDPGAGAQPSGG |
| Ga0126376_112326022 | 3300010359 | Tropical Forest Soil | MAKKRSKRAAKASAAKSKHRGKARAAPAQAKPKGVINAWEQDPGDGHSSAELL* |
| Ga0126381_1044005501 | 3300010376 | Tropical Forest Soil | MAKKRSKRTSKTAARRSKRKGKAGAAVPRRAQPKGAINA |
| Ga0126383_110104363 | 3300010398 | Tropical Forest Soil | MARKRSKRASKTSPARSKRRGKARAAAAEAKPKGVINAWEQDPGDGAQPSGGQVI |
| Ga0126383_110322202 | 3300010398 | Tropical Forest Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAIPRRAQPKGAINAWEDDPGAGAQPSGGP |
| Ga0126383_111669612 | 3300010398 | Tropical Forest Soil | MAKKRSKRTSKTSGPRSKRKGNAGAAVPRRAQAKRVINAWEDDPGAGAQPSGGQVIQR |
| Ga0126383_135262011 | 3300010398 | Tropical Forest Soil | MAMAKKRSKRAAKKSAARSSGRKARAVSTERGAQPKGVINGWEDDPGAGAQPSGGQ |
| Ga0126383_135841212 | 3300010398 | Tropical Forest Soil | MAKKRSKRASKTLPARSGRRGKARAAAAEAKPKGVVNAWEQDPGDGAQPSGGQVI |
| Ga0126383_136631961 | 3300010398 | Tropical Forest Soil | MAKKRPKRASKTSAVRGKRRGRARAAPTQRRAQPKGMINAWEDD |
| Ga0137363_110320034 | 3300012202 | Vadose Zone Soil | MARKRSKRASKTSAARSKRKGKARAAPPERSAQPKGVINAWEDDPGAGNQPSGG |
| Ga0137379_116008352 | 3300012209 | Vadose Zone Soil | MAKKRSKRASKTSAPRSKRKGKAGAAAPRRAQPKGVINAWEDDPGAGAQPSGGQVIQRP |
| Ga0137384_106859642 | 3300012357 | Vadose Zone Soil | MATKRFKRASKASAARSKRKVRARATPTERRAQPKGVINAWEDDP |
| Ga0137368_109539852 | 3300012358 | Vadose Zone Soil | MAKKRSRRGSKAPAARSKRRGRARAAPTEGRAQPKGVINAWEDDP |
| Ga0137358_107836322 | 3300012582 | Vadose Zone Soil | MAKKRSKRASKRSAARSSKRKARAVSTERGAQPKGMINAWEDDPGAGAQPSGGQVVQRP |
| Ga0137359_117789351 | 3300012923 | Vadose Zone Soil | MARKRSKRASKTSPARSKRRGKARAAAAEAKPKGVVNAWEQDPGDGAQPSGGQVIQR |
| Ga0126375_118112952 | 3300012948 | Tropical Forest Soil | MAKKRSKRTSKTSAPRSKPKGKAGAAVPRRAQPKGMINAWEDD |
| Ga0164302_109915651 | 3300012961 | Soil | MAKKRSKRASKRSATRTSRRKARAVSTERGAQPRGVINAWEDDPGAGVQPSGGQVVQRPVPV |
| Ga0137403_115526892 | 3300015264 | Vadose Zone Soil | MARKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGA |
| Ga0182036_102050431 | 3300016270 | Soil | MASKRTRRASKASAARGKRAGKARPLPAERRAQPKGAINAWEDDPGAGA |
| Ga0182041_104858241 | 3300016294 | Soil | MAKKRSKRAPKTSAPRRKRKGKAGAAVPRRAQPKGVINAWEDDPG |
| Ga0182041_114195592 | 3300016294 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGV |
| Ga0182033_101392954 | 3300016319 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDP |
| Ga0182035_102505992 | 3300016341 | Soil | MAKKRSKRASKTSARRSKRKGTAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVI |
| Ga0182035_103862742 | 3300016341 | Soil | MAKKRSKHTSKTSAPRSKRKGKAGAAVPRRAQPKGVI |
| Ga0182032_117317812 | 3300016357 | Soil | MAKKRSKRTSKTSAARSKRKGKAGAAVPRRAQGAINAWEDDPGAGAQPSGGQVIQRPVPN |
| Ga0182032_118578461 | 3300016357 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGTQP |
| Ga0182040_100448681 | 3300016387 | Soil | MAKKRSKRASKTSARRSKRKGTAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQRPVPD |
| Ga0182040_106232171 | 3300016387 | Soil | MAKKRSKRASKTSAARSKRRGKARTPPTEARPKGVINAWEQDPGDGAQPSGGQVIQRPVP |
| Ga0193728_12454092 | 3300019890 | Soil | MAKKRSKRASKRSTARSSRRKARAVSTERGAQPKGVINGWEDDPGAGAQPSGGQVVQRP |
| Ga0210406_103269604 | 3300021168 | Soil | MAKKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGMINAWEDDPGAGAQPSGGQVIQRPI |
| Ga0210392_103200832 | 3300021475 | Soil | MAKKRSKRAAKKSAARTGRRKARAVSTERGAQPKGVINGWEDDPGAGNQPSGGQVVQR |
| Ga0126371_109453902 | 3300021560 | Tropical Forest Soil | MAKKRSKRTSKTAARRSKRKGKAGAAVPRRAQPKGAINAWEDDP |
| Ga0126371_117599382 | 3300021560 | Tropical Forest Soil | MAKKRSKRAVKRSAARSGKRKARAVSTERAAQPKGVINGWEDDPGAGDRPSGGHEQCPEF |
| Ga0207699_102583083 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MAKKRSKRAAKKSAARIGKRKARAVSTERGAQPKGMINAWEDDPGAGAQPSGGQVVQRP |
| Ga0209350_11577711 | 3300026277 | Grasslands Soil | MAKKRSKRVSKASAARRKHRGKVRAAPTEGRAQPKGVINAWED |
| Ga0209473_12283562 | 3300026330 | Soil | MASKRSKRASKASTARHKRGRKARAAITERRVQPKGVINAWEDDPGAG |
| Ga0209577_104694262 | 3300026552 | Soil | MAKKRSKRAAKKSAARIGKRKARAVSTERGAQPKGMINAWEDDPGAGAQPSGGQ |
| Ga0307312_104332031 | 3300028828 | Soil | MAKKRSKRAAKKSAARIGRRKARAVSTERGAQPKGVINGWEDDPGAGAQPSGGQVVQRP |
| Ga0318516_101884641 | 3300031543 | Soil | MARKRSKRASKTSPARSKRRGKARAAAAEAKPKGVVNAWEQDPGDGAQPSGGQVIQRPV |
| Ga0318516_104353641 | 3300031543 | Soil | MAKKRSKRASKTSAARSKRRGKARAAPTEASAKPKGVINAWEQDPGEGAQPSGGQVIQR |
| Ga0318541_1001010510 | 3300031545 | Soil | MAKKRSKRASKTSARRSKRKGTAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQ |
| Ga0318541_107723262 | 3300031545 | Soil | MAKKRSKRTSKTSAPRGKRKGKAGAAVPRRAQPTGVINAWEDDPGAGAQPSGGQVTQRPVPVL |
| Ga0318538_101367733 | 3300031546 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKDVVNAWAD |
| Ga0318528_103219961 | 3300031561 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPTGVINAWEDDPGAGAQPSGGQVTQR |
| Ga0318528_106946691 | 3300031561 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQ |
| Ga0318573_103437041 | 3300031564 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGTQ |
| Ga0318515_101380952 | 3300031572 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPKGVINAWED |
| Ga0318515_103335261 | 3300031572 | Soil | MARKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGAINAWEDDPGASAQPSGGQVIQR |
| Ga0318515_107915362 | 3300031572 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVVNAW |
| Ga0318542_100946931 | 3300031668 | Soil | MAKKRSKRASKTSARRSKRKGTAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQR |
| Ga0318574_106923291 | 3300031680 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDD |
| Ga0318574_108537381 | 3300031680 | Soil | MARKRSKRASKTSAPRSERKGKAGAAVPRRAQPKGVINAWEDDPGAGAQP |
| Ga0306918_103967291 | 3300031744 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVVNAWEDDP |
| Ga0318554_100604612 | 3300031765 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPKGVINAWE |
| Ga0318554_108212071 | 3300031765 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGTQPSGGQVIQRPVPVL |
| Ga0318509_102115951 | 3300031768 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVIN |
| Ga0318546_111304252 | 3300031771 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQR |
| Ga0318543_101155981 | 3300031777 | Soil | MARKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGAINAWEDDPGAGAQPSGGQV |
| Ga0318498_101586312 | 3300031778 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVVNAWEDDPGAGAQPSGGPVIQ |
| Ga0318547_103093891 | 3300031781 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGTQPSG |
| Ga0318529_101857851 | 3300031792 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVVNAWEDDPGAGAQPSGGPVIQR |
| Ga0318550_106587662 | 3300031797 | Soil | MAKKRSKRASKTSALRGKRRGRARPAPTQRRAQPKGMINAWEDDPGAGAQPSGGQVIQR |
| Ga0318523_106777651 | 3300031798 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPQGVINAWEDDPGAGAQ |
| Ga0318497_104967981 | 3300031805 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGA |
| Ga0318511_100555601 | 3300031845 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGA |
| Ga0306925_109430981 | 3300031890 | Soil | MAKKRSKRTSKSSVLRSKRKGKAGAAIPRRAQPKGVINAWEDDPGAGAQPSGGQV |
| Ga0318536_100203211 | 3300031893 | Soil | MAKKRLKRAAKTSAAKSKRRGKARAAAVEAKPKGVINAWEQDPGDGAQPSGGQV |
| Ga0318551_106942751 | 3300031896 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWED |
| Ga0306923_111334351 | 3300031910 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPTGVINAWEDDP |
| Ga0306921_101957062 | 3300031912 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPTGVINAWEDDPGAGAQPSGGPV |
| Ga0310916_110549532 | 3300031942 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGPVIQRP |
| Ga0310910_104060701 | 3300031946 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSG |
| Ga0310910_108280381 | 3300031946 | Soil | MAKKRSKRTSKSSVLRSKRKGKAGAAIPRRAQPKGVIN |
| Ga0310910_108708201 | 3300031946 | Soil | MAKKRSKRASKTPAARSKRKGKIGAAAPRRAQPKGVINAWEDDPGAGA |
| Ga0310909_100320857 | 3300031947 | Soil | MARKRSKRASKTSAPRSERKGKAGAAVPRRAQPKGVINAWEDDPGAGAQ |
| Ga0306926_126668171 | 3300031954 | Soil | MAKERSKRASKTSAPRSKRKGKVGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQRLS |
| Ga0306922_115629831 | 3300032001 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVVNAWEDDPGAGAQPS |
| Ga0318507_100651663 | 3300032025 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGP |
| Ga0318507_101911282 | 3300032025 | Soil | MAKKRSKHTSKTSAPRSKRKGKAGAAVPRRAQPKGVIN |
| Ga0310911_101462341 | 3300032035 | Soil | MAKKRSKRAPKTSAPRRKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQR |
| Ga0318549_105019061 | 3300032041 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGTQPSGGQVIQR |
| Ga0318545_101694542 | 3300032042 | Soil | MAKKRSKRTSKASAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGG |
| Ga0318532_102526212 | 3300032051 | Soil | MARKRSKRASKTSAPRSERKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGG |
| Ga0318575_100564363 | 3300032055 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQRSVPD |
| Ga0318575_105899021 | 3300032055 | Soil | MAKKRSKRTSKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGAQPSGGQVIQRPVPD |
| Ga0318533_102542351 | 3300032059 | Soil | MAKKRSKRASKTPAARSKRKGKIGAAAPRRAQPKGVINAWEDDPGAGAQPSGGQV |
| Ga0318533_106967931 | 3300032059 | Soil | MAKKRSKRTSKTSAPRGKRKGKAGAAVPRRAQPTGVINAWEDDPGAGAQPSGGQVTQRPV |
| Ga0318505_100384273 | 3300032060 | Soil | MAKKRSKRASKTSARRSKRKGTAGAAVPRRAQPKGVINAW |
| Ga0318505_102713362 | 3300032060 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPG |
| Ga0318510_101060951 | 3300032064 | Soil | MAKKRSKRTLKTSAPRSKRKGKAGAAVPRRAQPKGVINAWEDDPGAGTQPS |
| Ga0318514_106032031 | 3300032066 | Soil | MARKRSKRASKTSAPRSERKGKAGAAVPRRAQPKGVINAWEDDPG |
| Ga0318553_107373142 | 3300032068 | Soil | MARKRSKRASKTSAPRSKRKGKAGAAVPRRAQPKGAINAWEDDPGAGAQPSGGQVIQRP |
| Ga0318525_105540722 | 3300032089 | Soil | MAKKRSKRTSKTSGPRSKRKGKAGAAVPRRAQPKGVVNAWEDDPGAGAHPSGGPV |
| Ga0306920_1027959391 | 3300032261 | Soil | MAKKRSKRASKTSPARSGRRGKARAAAAEAKPKGVVNAWEQDPGDGAQPSGGQVIQRSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |