Metagenome / Metatranscriptome Family F087655

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087655
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	63 residues
Representative Sequence	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Number of Associated Samples	94
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.36 %
% of genes near scaffold ends (potentially truncated)	29.09 %
% of genes from short scaffolds (< 2000 bps)	83.64 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (57.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.44% β-sheet: 0.00% Coil/Unstructured: 95.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01464	SLT	22.73
PF08241	Methyltransf_11	18.18
PF00075	RNase_H	8.18
PF03259	Robl_LC7	2.73

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	2.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.91 %
Unclassified	root	N/A	19.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.91 %
Unclassified	root	N/A	19.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.91 %
Unclassified	root	N/A	19.09 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	80.91 %
Unclassified	root	N/A	19.09 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	49.09 %
Unclassified	root	N/A	19.09 %

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	45.45 %
Unclassified	root	N/A	19.09 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	21.82 %
Unclassified	root	N/A	19.09 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.09 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	14.55 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	4.55 %
Rhizobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	2.73 %
Ralstonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.09 %
unclassified Ideonella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella	14.55 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	4.55 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %
unclassified Rhizobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.09 %
Ideonella sp. MAG2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	14.55 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	4.55 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %
Rhizobacter sp. Root404	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	1.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_103395145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	511	Open in IMG/M
3300004463\|Ga0063356_100633322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1454	Open in IMG/M
3300005331\|Ga0070670_100032430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	4499	Open in IMG/M
3300005331\|Ga0070670_100051559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3533	Open in IMG/M
3300005331\|Ga0070670_100111941	All Organisms → cellular organisms → Bacteria → Proteobacteria	2352	Open in IMG/M
3300005333\|Ga0070677_10122647	All Organisms → cellular organisms → Bacteria → Proteobacteria	1176	Open in IMG/M
3300005333\|Ga0070677_10123413	All Organisms → cellular organisms → Bacteria → Proteobacteria	1172	Open in IMG/M
3300005334\|Ga0068869_100454849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1062	Open in IMG/M
3300005337\|Ga0070682_100908921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	724	Open in IMG/M
3300005339\|Ga0070660_101942582	Not Available	502	Open in IMG/M
3300005343\|Ga0070687_100092378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1677	Open in IMG/M
3300005344\|Ga0070661_100037095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3545	Open in IMG/M
3300005353\|Ga0070669_100105004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2136	Open in IMG/M
3300005353\|Ga0070669_100416796	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300005356\|Ga0070674_100069959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	2477	Open in IMG/M
3300005356\|Ga0070674_100074419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2410	Open in IMG/M
3300005364\|Ga0070673_100406412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1218	Open in IMG/M
3300005364\|Ga0070673_100452832	All Organisms → cellular organisms → Bacteria → Proteobacteria	1155	Open in IMG/M
3300005367\|Ga0070667_100005274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	10812	Open in IMG/M
3300005455\|Ga0070663_100585635	All Organisms → cellular organisms → Bacteria → Proteobacteria	936	Open in IMG/M
3300005456\|Ga0070678_101175218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	711	Open in IMG/M
3300005459\|Ga0068867_100549007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1001	Open in IMG/M
3300005459\|Ga0068867_101200814	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300005459\|Ga0068867_102286948	Not Available	514	Open in IMG/M
3300005539\|Ga0068853_102437096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	507	Open in IMG/M
3300005543\|Ga0070672_101364980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	633	Open in IMG/M
3300005578\|Ga0068854_100019973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	4522	Open in IMG/M
3300005614\|Ga0068856_101096267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	813	Open in IMG/M
3300005617\|Ga0068859_101595164	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300005618\|Ga0068864_101214874	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300005718\|Ga0068866_10186022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1230	Open in IMG/M
3300005719\|Ga0068861_102671204	Not Available	504	Open in IMG/M
3300005834\|Ga0068851_10887959	All Organisms → cellular organisms → Bacteria → Proteobacteria	558	Open in IMG/M
3300006173\|Ga0070716_100393225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	995	Open in IMG/M
3300006358\|Ga0068871_101186752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	716	Open in IMG/M
3300006578\|Ga0074059_11180972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	619	Open in IMG/M
3300006606\|Ga0074062_12964917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	850	Open in IMG/M
3300006791\|Ga0066653_10425258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	679	Open in IMG/M
3300006880\|Ga0075429_101900808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	516	Open in IMG/M
3300006881\|Ga0068865_100993442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	734	Open in IMG/M
3300009101\|Ga0105247_11296390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	585	Open in IMG/M
3300009156\|Ga0111538_10554517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	1457	Open in IMG/M
3300009177\|Ga0105248_13472793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	500	Open in IMG/M
3300009551\|Ga0105238_10863656	All Organisms → cellular organisms → Bacteria → Proteobacteria	922	Open in IMG/M
3300009553\|Ga0105249_12096851	Not Available	638	Open in IMG/M
3300010400\|Ga0134122_10477392	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300010403\|Ga0134123_13311245	Not Available	520	Open in IMG/M
3300011332\|Ga0126317_11028714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	584	Open in IMG/M
3300012511\|Ga0157332_1084933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	516	Open in IMG/M
3300012900\|Ga0157292_10028759	Not Available	1385	Open in IMG/M
3300012903\|Ga0157289_10123677	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300012957\|Ga0164303_10169014	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300012958\|Ga0164299_10347546	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300012961\|Ga0164302_10198496	Not Available	1231	Open in IMG/M
3300012985\|Ga0164308_11250997	Not Available	672	Open in IMG/M
3300012988\|Ga0164306_10100043	All Organisms → cellular organisms → Bacteria → Proteobacteria	1889	Open in IMG/M
3300012989\|Ga0164305_10056340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	2330	Open in IMG/M
3300013296\|Ga0157374_12799898	Not Available	515	Open in IMG/M
3300013308\|Ga0157375_11437436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	813	Open in IMG/M
3300013308\|Ga0157375_13474983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	524	Open in IMG/M
3300014166\|Ga0134079_10519589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	578	Open in IMG/M
3300014326\|Ga0157380_10047012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter	3392	Open in IMG/M
3300014969\|Ga0157376_10882173	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
3300014969\|Ga0157376_10974812	All Organisms → cellular organisms → Bacteria → Proteobacteria	869	Open in IMG/M
3300015200\|Ga0173480_10553182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	698	Open in IMG/M
3300015371\|Ga0132258_12439394	All Organisms → cellular organisms → Bacteria → Proteobacteria	1309	Open in IMG/M
3300015372\|Ga0132256_100775400	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300015373\|Ga0132257_103962868	Not Available	539	Open in IMG/M
3300015374\|Ga0132255_102612216	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300017792\|Ga0163161_10689578	All Organisms → cellular organisms → Bacteria → Proteobacteria	849	Open in IMG/M
3300017965\|Ga0190266_10662002	All Organisms → cellular organisms → Bacteria → Proteobacteria	644	Open in IMG/M
3300018469\|Ga0190270_11365158	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300018476\|Ga0190274_11273694	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300018476\|Ga0190274_11333094	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300018481\|Ga0190271_10043861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	3746	Open in IMG/M
3300019356\|Ga0173481_10819163	Not Available	516	Open in IMG/M
3300019362\|Ga0173479_10009177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2509	Open in IMG/M
3300022904\|Ga0247769_1176517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	534	Open in IMG/M
3300022906\|Ga0247766_1142225	Not Available	624	Open in IMG/M
3300022908\|Ga0247779_1214784	Not Available	506	Open in IMG/M
3300023275\|Ga0247776_10212793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	727	Open in IMG/M
3300025315\|Ga0207697_10080102	Not Available	1376	Open in IMG/M
3300025315\|Ga0207697_10344178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	662	Open in IMG/M
3300025321\|Ga0207656_10446911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	653	Open in IMG/M
3300025893\|Ga0207682_10056641	Not Available	1632	Open in IMG/M
3300025901\|Ga0207688_10370376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	885	Open in IMG/M
3300025918\|Ga0207662_10084328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1944	Open in IMG/M
3300025919\|Ga0207657_11381117	Not Available	529	Open in IMG/M
3300025920\|Ga0207649_10065311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2303	Open in IMG/M
3300025923\|Ga0207681_11039636	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300025923\|Ga0207681_11247035	Not Available	624	Open in IMG/M
3300025925\|Ga0207650_10065388	All Organisms → cellular organisms → Bacteria → Proteobacteria	2725	Open in IMG/M
3300025925\|Ga0207650_10126624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1994	Open in IMG/M
3300025930\|Ga0207701_10500511	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300025931\|Ga0207644_11076404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	675	Open in IMG/M
3300025931\|Ga0207644_11622162	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300025935\|Ga0207709_11845963	Not Available	503	Open in IMG/M
3300025936\|Ga0207670_10383170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	1120	Open in IMG/M
3300025937\|Ga0207669_10211325	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416	Open in IMG/M
3300025941\|Ga0207711_10437476	Not Available	1217	Open in IMG/M
3300026041\|Ga0207639_12054239	Not Available	533	Open in IMG/M
3300026067\|Ga0207678_10647388	All Organisms → cellular organisms → Bacteria → Proteobacteria	928	Open in IMG/M
3300026078\|Ga0207702_11333091	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300028596\|Ga0247821_10376897	All Organisms → cellular organisms → Bacteria → Proteobacteria	881	Open in IMG/M
3300031170\|Ga0307498_10105462	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300031199\|Ga0307495_10232840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → unclassified Ideonella → Ideonella sp. MAG2	522	Open in IMG/M
3300031939\|Ga0308174_10006500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root404	6396	Open in IMG/M
3300031939\|Ga0308174_10054609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2712	Open in IMG/M
3300032012\|Ga0310902_11109271	Not Available	554	Open in IMG/M
3300033550\|Ga0247829_10097022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2208	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	61.82%
Environmental	Environmental	38.18%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	61.82%
Terrestrial	Environmental → Terrestrial	37.27%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.18%
Soil	Environmental → Terrestrial → Soil	33.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.73%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.64%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	25.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.73%
Loam	Environmental → Terrestrial → Soil → Loam	4.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	25.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.55%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022904	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6	Environmental	Open in IMG/M
3300022906	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1033951453	3300004114	Soil	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYLASSPARGLMIPGDDTLAALRIW
Ga0063356_1006333221	3300004463	Arabidopsis Thaliana Rhizosphere	MRHPRAVGPGRVDVKPGGRFVTDIAARTTGHIAYLAPLPARGPMIPGGDTLAALRIWKNEFR
Ga0070670_1000324303	3300005331	Switchgrass Rhizosphere	MAAILMTHPCAVAQGRVDATPGSPFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR*
Ga0070670_1000515591	3300005331	Switchgrass Rhizosphere	MTHPRAAVRRRVDAPPGSRFVTDIAARTTGHIAYLAPLRAGEPIVLHGDTLAALRIWKHPFR*
Ga0070670_1001119412	3300005331	Switchgrass Rhizosphere	MTHPRAVAPVRAAAPPTARSVTDLSARTTGHIAYLEPLRAGEPIVLLGDTLPALRIWKHPFR*
Ga0070677_101226472	3300005333	Miscanthus Rhizosphere	CPAPRMAAILMTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR*
Ga0070677_101234132	3300005333	Miscanthus Rhizosphere	MTHPRAVAKGRVDATPGARFVTDIAARTTGHIAYVEPSGAGKPMIPSGDTLAPLRIWKNEFR*
Ga0068869_1004548492	3300005334	Miscanthus Rhizosphere	ARCPAPRMAAILMTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0070682_1009089211	3300005337	Corn Rhizosphere	MAAILMTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0070660_1019425822	3300005339	Corn Rhizosphere	PRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR*
Ga0070687_1000923781	3300005343	Switchgrass Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAALRIWKNEFR*
Ga0070661_1000370952	3300005344	Corn Rhizosphere	MRHPRAAGQGRVDAKPGDRSVTDIAARTTGHIAYLAPLPARGPMMSGSDTLAALRIWKNEFR*
Ga0070669_1001050044	3300005353	Switchgrass Rhizosphere	MTHPCAVAQGRVDATPGSPFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR*
Ga0070669_1004167963	3300005353	Switchgrass Rhizosphere	MTHPRAVAPSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALRIWKNEFR*
Ga0070674_1000699594	3300005356	Miscanthus Rhizosphere	MTHPRAVASSRVDAAPGARFVTEIAARTPSHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR*
Ga0070674_1000744191	3300005356	Miscanthus Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR*
Ga0070673_1004064122	3300005364	Switchgrass Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPSGAGKPMIPSGDTLAPLRIWKNEFR*
Ga0070673_1004528322	3300005364	Switchgrass Rhizosphere	PRMAAILMTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR*
Ga0070667_1000052742	3300005367	Switchgrass Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR*
Ga0070663_1005856351	3300005455	Corn Rhizosphere	PRMAAILMTHPRAAVRRRVDAPPGSRFVTDIAARTTGHIAYVEPSGAGKPMIPSGDTLAPLRIWKNEFR*
Ga0070678_1011752181	3300005456	Miscanthus Rhizosphere	MTHPRAVAPSRVDVAPGSHFVTEIAARTTGHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR*
Ga0068867_1005490071	3300005459	Miscanthus Rhizosphere	PRMAAILMTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0068867_1012008142	3300005459	Miscanthus Rhizosphere	MTHPRAVAPGRGDASPGPGFVTDIAAQTPGHIAYLAAARARGPMIRGGDTLAALRIWKNEFR*
Ga0068867_1022869482	3300005459	Miscanthus Rhizosphere	GAAGQGARCPAPRMAAILMTHPRAVASSRVDAAPGARFVTEIAARTPSHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR*
Ga0068853_1024370962	3300005539	Corn Rhizosphere	ARCPAPRMAAILMTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPSGAGKPMILSGDTLAPLRIWKNEFR*
Ga0070672_1013649802	3300005543	Miscanthus Rhizosphere	MTHPRAVAKGRVDATPGARFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0068854_1000199736	3300005578	Corn Rhizosphere	MRHPRAVGPGRVDAKPGGRFVTDIAARTTGHIAYLAPLPARGPMIPGGDTLAALRIWKNEFR*
Ga0068856_1010962672	3300005614	Corn Rhizosphere	MRHPRAVGPGRVDAKPGGRFVTDIAARTTGHIAYLAPLPARGPMISGGDTLAALRIWKNEFR*
Ga0068859_1015951642	3300005617	Switchgrass Rhizosphere	AKGRVDATPGARFVTDIAARTTGHIAYVEPLGAGKPMIPSGDTLAPLRIWKNEFR*
Ga0068864_1012148742	3300005618	Switchgrass Rhizosphere	MAAILMTHPRAVAPGRVDATQGPRFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR*
Ga0068866_101860222	3300005718	Miscanthus Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0068861_1026712042	3300005719	Switchgrass Rhizosphere	MAAILMTHPRAVAPSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALRIWKNEFR*
Ga0068851_108879592	3300005834	Corn Rhizosphere	RVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR*
Ga0070716_1003932252	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MAAILMSHPRAVAQGRVDAAPGSPFVTDIAARTTGHIAYLEPLRAADPIVSPGDTLAALRILKNPFR*
Ga0068871_1011867523	3300006358	Miscanthus Rhizosphere	MAAILMTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0074059_111809721	3300006578	Soil	MTHPRAVAQGRVDATPGSRFVTDIAARTPGHIVYLEPLRSYGPMILGGDTLAALRIWKNEFR*
Ga0074062_129649173	3300006606	Soil	MAAILMTHLRAVVPGRVDAASGSRFVTDISAQTTGHIVYLAPLRAAEPMVLGDDTLAALRIWKNEFR*
Ga0066653_104252582	3300006791	Soil	MAAILMRHPRAVAQGRVDAASGSPFVTDIAARTTGHIAYLEPLRAADPIVSPGDTLAALRILKNPFR*
Ga0075429_1019008082	3300006880	Populus Rhizosphere	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPSGAGKPMILSGDTLAPLRIWKNEFR*
Ga0068865_1009934421	3300006881	Miscanthus Rhizosphere	MTHPRAVASSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALR
Ga0105247_112963903	3300009101	Switchgrass Rhizosphere	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLR
Ga0111538_105545172	3300009156	Populus Rhizosphere	MTHPRAVAPSRVDAAPGARFVTEIAARTPSHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR*
Ga0105248_134727933	3300009177	Switchgrass Rhizosphere	MTHPRAVAQGRVDATPGSRFVTDIAARTPGHIVYLEPLGAGEPMILGGDTLAALRIWKNEFR*
Ga0105238_108636561	3300009551	Corn Rhizosphere	MTHPRAVAPSRVDAAPGSHFVTEMAARTTGHIVYLEPLPVGEPMILGGDTLAALRIWK
Ga0105249_120968512	3300009553	Switchgrass Rhizosphere	MTHPRAVASSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALRIWKNEFR*
Ga0134122_104773923	3300010400	Terrestrial Soil	MTHPRAVASGRGDATPGSRFVTDIAARTIGHIAYVEPLRAGEPMVLGGDTLAPLRIWKNEFR*
Ga0134123_133112452	3300010403	Terrestrial Soil	MRHLRAVVQCRADAAPACRSVTDAAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0126317_110287141	3300011332	Soil	MTHPRAVGQGRVVAKPGDRFVTDIAARTTGHIAYLAPSPARGPMIPGGDTLAALRIWKNE
Ga0157332_10849332	3300012511	Soil	MAAILMSHPRAVAQCRAAAQPGSRFVTDAAARTTGHIAYLEPLRAAGPIVSPGDTLAALRILKNPFR*
Ga0157292_100287593	3300012900	Soil	MTHPRAVAKGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0157289_101236772	3300012903	Soil	AVAKGRVDATPGSLFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR*
Ga0164303_101690142	3300012957	Soil	MTHPRAVVRSRVDAASGSRFVTDISARTTGHIVYLAPLRAGEPMVLGDDTLAALRIWKNEFR*
Ga0164299_103475463	3300012958	Soil	MTHPPAVAQSRVDATPGSRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0164302_101984963	3300012961	Soil	MTHPRAVVRSRADAASGSRFVTDISARTTGHIVYLAPLRAGEPMVLGDDTLAALRIWKNEFR*
Ga0164308_112509972	3300012985	Soil	MTHPRAVAQGRVDATAGSHFVTDIAARTSGHIAYVEPLRAGSPMIPSGDTLAPLRIWKTEFR*
Ga0164306_101000432	3300012988	Soil	MTHSRAVVPGRVDAPSGCRFVTDLAAGTTGHIVYLAPLRAGEPMVIGDDTLAALRIWKNEFR*
Ga0164305_100563402	3300012989	Soil	MTHPRAVVRSRVDAASGSRFVTDISARTTGHIVYLAPLRAGEPMILGDDTLAALRIWKNEFR*
Ga0157374_127998982	3300013296	Miscanthus Rhizosphere	MRHPSAVGPGRVDAKRRGRFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR*
Ga0157375_114374361	3300013308	Miscanthus Rhizosphere	MAAILMTHPRAVAQGRVDATPGSRFVTDIAARTPGHIVYLEPLGAGEPMILGGDTLAALRIWKNEFR*
Ga0157375_134749832	3300013308	Miscanthus Rhizosphere	MAAILMSHPRAVAQGRVDAAPGSPFVTDIAARTTGHIAYPEPLRAADPIVSPGDTLAALRILKNPFR*
Ga0134079_105195892	3300014166	Grasslands Soil	MAAILMRHSRAVAQGRVDAASGSPFVTDIAARTTGHIAYLEPLRAADPIVSPGDTLAALRILKNPFR*
Ga0157380_100470125	3300014326	Switchgrass Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPMGAGKPMILSGDTLAPLRIWKNEFR*
Ga0157376_108821733	3300014969	Miscanthus Rhizosphere	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKN
Ga0157376_109748123	3300014969	Miscanthus Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDISARTTGHIVYLAPLRAGEPMVLGDDTL
Ga0173480_105531821	3300015200	Soil	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0132258_124393943	3300015371	Arabidopsis Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDIAARTSGHIAYLAPFRAGEPMVLGGDTLAALRIWKNEFR*
Ga0132256_1007754001	3300015372	Arabidopsis Rhizosphere	QGRVDATPGSRFVTDIAARTPGHIVYLEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0132257_1039628682	3300015373	Arabidopsis Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDIAARTPGHIAYLAAARARGPMIRGGDTLAALRIWKNEFR*
Ga0132255_1026122162	3300015374	Arabidopsis Rhizosphere	MRHPRAVAHGRVDAAPGSRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR*
Ga0163161_106895783	3300017792	Switchgrass Rhizosphere	MTHPRAVASSRVDAAPGARFVTEIAARTTGHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR
Ga0190266_106620022	3300017965	Soil	MTHPRAVAQGRGDASPGSRFVTDIAAQTPGHIVYLAPSGASGPMILGGDTLPALRIWKNEFR
Ga0190270_113651581	3300018469	Soil	LMTHPRAVAQGRADATAGSYFVTDIAARTSSHIAYVGPLRPGSPMIPSGDTLAPLRIWKNEFR
Ga0190274_112736942	3300018476	Soil	MTHPRAVAQGRGDASPGSRFVTDIAAQTPSHIVYLAPSRASGPMILGGDTLPALRIWKNEFR
Ga0190274_113330942	3300018476	Soil	MTHPRAVAQGRVDATPGFYFVTDIAARTSSHIAYVGPLRPGSPMIPSGDTLAPLRIWKNEFR
Ga0190271_100438613	3300018481	Soil	MTHPRAVVQGRADATAGSYFVTDIAARTSSHIAYVGPLRPGSPMIPSGDTLAPLRIWKNEFR
Ga0173481_108191632	3300019356	Soil	MAAILMTHPRAVASSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALRIWKNEFR
Ga0173479_100091772	3300019362	Soil	MTHPCAVAQGRVDATPGSPFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR
Ga0247769_11765171	3300022904	Plant Litter	MAAILMTHPCAVAQGRVDATPGSPFVTDIAARTTGHIVYVEPLAAGKPMILSGDTLAPLRIWKNEFR
Ga0247766_11422252	3300022906	Plant Litter	MTHPCAVAQGRVDATPGSPFVTDIAARTTGHIAYVEPMGAGKPMILSGDTLAPLRIWKNEFR
Ga0247779_12147842	3300022908	Plant Litter	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPSGAGKPMILSGDTLAPLRIWKNEFR
Ga0247776_102127931	3300023275	Plant Litter	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Ga0207697_100801023	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPRAVASSRVDAAPGARFVTEIAARTPSHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR
Ga0207697_103441782	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR
Ga0207656_104469111	3300025321	Corn Rhizosphere	VAQCRADAQPGSRSVTDAAARTTGHIAYVAPLCENGPIIHGGDTLAALRIWKNPFR
Ga0207682_100566412	3300025893	Miscanthus Rhizosphere	MTHPRAVAPSRVDVAPGSHFVTEIAARTTGHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR
Ga0207688_103703761	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Ga0207662_100843284	3300025918	Switchgrass Rhizosphere	MTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAALRIWKNEFR
Ga0207657_113811171	3300025919	Corn Rhizosphere	AILMTHPRAVVPGRVDAASGSRFVTDIAVRTTGHIVYLAPLRAGEPMILGGDTLAAPRIWKNEFR
Ga0207649_100653113	3300025920	Corn Rhizosphere	MRHPRAAGQGRVDAKPGDRSVTDIAARTTGHIAYLAPLPARGPMMSGSDTLAALRIWKNEFR
Ga0207681_110396361	3300025923	Switchgrass Rhizosphere	PAPRMAAILMTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Ga0207681_112470352	3300025923	Switchgrass Rhizosphere	MTHPRAVAPSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALRIWKNEFR
Ga0207650_100653883	3300025925	Switchgrass Rhizosphere	MTHPRAAVRRRVDAPPGSRFVTDIAARTTGHIAYLAPLRAGEPIVLHGDTLAALRIWKHPFR
Ga0207650_101266242	3300025925	Switchgrass Rhizosphere	MTHPRAVAPVRAAAPPTARSVTDLSARTTGHIAYLEPLRAGEPIVLLGDTLPALRIWKHPFR
Ga0207701_105005112	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMIPSGDTLAPLRIWKNEFR
Ga0207644_110764043	3300025931	Switchgrass Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIW
Ga0207644_116221622	3300025931	Switchgrass Rhizosphere	PGRVDATPGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Ga0207709_118459632	3300025935	Miscanthus Rhizosphere	MTHPRAVAKGRVDATPGARFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Ga0207670_103831702	3300025936	Switchgrass Rhizosphere	MAAILMTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPLGAGKPMILSGDTLAPLRIWKNEFR
Ga0207669_102113252	3300025937	Miscanthus Rhizosphere	MTHPRAVAPSRVDAAPGARFVTEIAARTPSHIVYLEPLPVGEPMILGGDTLAALRIWKNEFR
Ga0207711_104374763	3300025941	Switchgrass Rhizosphere	MTHPRAVAQGRVDATPGSRFVTDIAARTPGHIVYLEPLGAGEPMILGGDTLAALRIWKNEFR
Ga0207639_120542392	3300026041	Corn Rhizosphere	MTHPRAVAPGRVDATQGPRFVTDIAARTTGHIAYVEPSGAGKPMILSGDTLAPLRIWKNEFR
Ga0207678_106473881	3300026067	Corn Rhizosphere	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYVEPSGAGKPMIPSGDTLAPLRIWKNEFR
Ga0207702_113330912	3300026078	Corn Rhizosphere	MRHPRAVGPGRVDAKPGGRFVTDIAARTTGHIAYLAPLPARGPMISGGDTLAALRIWKNEFR
Ga0247821_103768972	3300028596	Soil	MAAILMTHPRAVAPSRVDAAPGARFVTEIAARTPGHIVYLEPLPAGEPMILGGDTLTALRIWKNEFR
Ga0307498_101054622	3300031170	Soil	LMTHPRAVAQGRVDATPGSRFVTDIATRTPGHTVYLEPLRSGGAMILGGDTLAALRIWKNEFR
Ga0307495_102328403	3300031199	Soil	MTHPRAVAQGRVDATPGSRFVTDIATRTPGHTVYLEPLRSGGAMILGGDTLAALRIWKNEFR
Ga0308174_100065006	3300031939	Soil	MTHPRAVASGRVDAAPGSRSVTDLAARTTGHIAYLGPLRAGEPMVRGGDTLAALRIWKNDFR
Ga0308174_100546092	3300031939	Soil	MAAILMSHPRAVAPGRVDAAPGSSFVTEIAARTTGHIAYLGPLRAADPIVSAGDTLAALRIWKNPFR
Ga0310902_111092712	3300032012	Soil	MTHPRAVAPGRVDATPGPRFVTDIAARTTGHIAYLAPLRAGEPIVLHGDTLAALRIWKHPFR
Ga0247829_100970221	3300033550	Soil	MTHPRAVAQGRGDATPGSRFVTDIAARTTSHIVYVAPLRAGEPMVLGDDTLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087655

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences