Metagenome / Metatranscriptome Family F087639

Basic Information
Family ID	F087639
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	70 residues
Representative Sequence	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIEERIE
Number of Associated Samples	94
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.24 %
% of genes near scaffold ends (potentially truncated)	89.09 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Most Common Taxonomy
Group	Bacteria (87.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (21.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (33.636 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Mixed	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.86% β-sheet: 0.00% Coil/Unstructured: 38.14%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.7.12.0: automated matches	d4q25a_	4q25	0.71269
a.118.7.1: 14-3-3 protein	d3mhra1	3mhr	0.71193
a.7.12.0: automated matches	d2i0ma_	2i0m	0.68631
d.92.1.0: automated matches	d3hoaa_	3hoa	0.68425
a.45.1.0: automated matches	d4ivfb2	4ivf	0.68269

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00072	Response_reg	10.91
PF01165	Ribosomal_S21	3.64
PF09335	SNARE_assoc	3.64
PF00011	HSP20	2.73
PF07238	PilZ	2.73
PF07730	HisKA_3	2.73
PF00903	Glyoxalase	1.82
PF00027	cNMP_binding	1.82
PF03372	Exo_endo_phos	1.82
PF00069	Pkinase	0.91
PF02518	HATPase_c	0.91
PF12681	Glyoxalase_2	0.91
PF00589	Phage_integrase	0.91
PF11154	DUF2934	0.91
PF00486	Trans_reg_C	0.91
PF13545	HTH_Crp_2	0.91
PF07609	DUF1572	0.91
PF05598	DUF772	0.91
PF00581	Rhodanese	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	3.64
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.64
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	3.64
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	3.64
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	3.64
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	2.73
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	2.73
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	2.73
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	2.73
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	2.73

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.27 %
Unclassified	root	N/A	11.82 %
Viruses	superkingdom	All Organisms → Viruses	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.27 %
Unclassified	root	N/A	11.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.82 %
Unclassified	root	N/A	11.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.73 %
Unclassified	root	N/A	11.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.64 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.73 %
Unclassified	root	N/A	11.82 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.64 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.73 %
Unclassified	root	N/A	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.73 %
Unclassified	root	N/A	11.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10364394	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300004091\|Ga0062387_100920420	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300004799\|Ga0058863_11406290	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300004801\|Ga0058860_11267247	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300005435\|Ga0070714_101807154	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300005436\|Ga0070713_102201274	Not Available	534	Open in IMG/M
3300005437\|Ga0070710_11099004	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005533\|Ga0070734_10129578	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300005535\|Ga0070684_101115786	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300005537\|Ga0070730_10469437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300005541\|Ga0070733_10512020	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005542\|Ga0070732_10027638	All Organisms → cellular organisms → Bacteria → Acidobacteria	3219	Open in IMG/M
3300005542\|Ga0070732_10373669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300005542\|Ga0070732_10722494	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005560\|Ga0066670_10889808	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005560\|Ga0066670_10913795	Not Available	534	Open in IMG/M
3300005564\|Ga0070664_101110728	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300005564\|Ga0070664_102097265	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005577\|Ga0068857_100821512	Not Available	888	Open in IMG/M
3300005578\|Ga0068854_100644418	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005618\|Ga0068864_100123748	All Organisms → cellular organisms → Bacteria → Acidobacteria	2315	Open in IMG/M
3300006173\|Ga0070716_100808021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	727	Open in IMG/M
3300006173\|Ga0070716_101475641	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300006175\|Ga0070712_101645549	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300006175\|Ga0070712_101875297	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300006358\|Ga0068871_100913598	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300006797\|Ga0066659_11275679	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	613	Open in IMG/M
3300006800\|Ga0066660_10690036	Not Available	841	Open in IMG/M
3300006854\|Ga0075425_101597440	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300006954\|Ga0079219_11347076	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300007982\|Ga0102924_1394082	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009148\|Ga0105243_13102966	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300009518\|Ga0116128_1132960	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300009522\|Ga0116218_1186326	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300009636\|Ga0116112_1093972	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300009643\|Ga0116110_1040579	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300009839\|Ga0116223_10092324	All Organisms → cellular organisms → Bacteria → Acidobacteria	1921	Open in IMG/M
3300010379\|Ga0136449_102431055	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300010396\|Ga0134126_10351544	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300010397\|Ga0134124_10229472	All Organisms → Viruses → Predicted Viral	1699	Open in IMG/M
3300010401\|Ga0134121_10692216	Not Available	966	Open in IMG/M
3300012201\|Ga0137365_10465375	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012582\|Ga0137358_10879838	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300012927\|Ga0137416_10853301	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300012961\|Ga0164302_10762523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300013102\|Ga0157371_10057071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2769	Open in IMG/M
3300014325\|Ga0163163_13235392	Not Available	508	Open in IMG/M
3300014497\|Ga0182008_10046525	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300017822\|Ga0187802_10210120	Not Available	749	Open in IMG/M
3300017931\|Ga0187877_1355737	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300017938\|Ga0187854_10083022	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300017941\|Ga0187850_10284038	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300018008\|Ga0187888_1183442	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300018014\|Ga0187860_1046550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2224	Open in IMG/M
3300018014\|Ga0187860_1099340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1326	Open in IMG/M
3300018014\|Ga0187860_1309735	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018017\|Ga0187872_10185099	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300018020\|Ga0187861_10200248	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300018023\|Ga0187889_10122926	All Organisms → cellular organisms → Bacteria	1257	Open in IMG/M
3300018038\|Ga0187855_10252747	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300018044\|Ga0187890_10549376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300018057\|Ga0187858_10017989	All Organisms → cellular organisms → Bacteria → Acidobacteria	5610	Open in IMG/M
3300019082\|Ga0187852_1325582	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300019879\|Ga0193723_1160812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300020070\|Ga0206356_10345585	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300020580\|Ga0210403_10222927	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1547	Open in IMG/M
3300020583\|Ga0210401_10527507	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1043	Open in IMG/M
3300021168\|Ga0210406_10095827	All Organisms → cellular organisms → Bacteria	2524	Open in IMG/M
3300021170\|Ga0210400_11466708	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300021180\|Ga0210396_10215727	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300021180\|Ga0210396_11665444	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300021474\|Ga0210390_10370071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300021559\|Ga0210409_10115584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2468	Open in IMG/M
3300025134\|Ga0207416_1258995	Not Available	516	Open in IMG/M
3300025453\|Ga0208455_1006337	All Organisms → cellular organisms → Bacteria → Acidobacteria	3102	Open in IMG/M
3300025453\|Ga0208455_1042017	All Organisms → cellular organisms → Bacteria → Acidobacteria	1005	Open in IMG/M
3300025507\|Ga0208188_1009850	All Organisms → cellular organisms → Bacteria	3150	Open in IMG/M
3300025911\|Ga0207654_10473571	Not Available	881	Open in IMG/M
3300025912\|Ga0207707_11497528	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300025914\|Ga0207671_10652494	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300025921\|Ga0207652_10026964	All Organisms → cellular organisms → Bacteria → Acidobacteria	4788	Open in IMG/M
3300025928\|Ga0207700_10191192	All Organisms → cellular organisms → Bacteria	1720	Open in IMG/M
3300025929\|Ga0207664_10412499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300025939\|Ga0207665_10302471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1196	Open in IMG/M
3300025941\|Ga0207711_11661368	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300025944\|Ga0207661_10113596	All Organisms → cellular organisms → Bacteria → Acidobacteria	2295	Open in IMG/M
3300025981\|Ga0207640_10186862	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300026095\|Ga0207676_10239324	All Organisms → cellular organisms → Bacteria → Acidobacteria	1627	Open in IMG/M
3300026998\|Ga0208369_1009436	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300027071\|Ga0209214_1030288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	713	Open in IMG/M
3300027576\|Ga0209003_1087892	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300027842\|Ga0209580_10026557	All Organisms → cellular organisms → Bacteria → Acidobacteria	2610	Open in IMG/M
3300027842\|Ga0209580_10038286	All Organisms → cellular organisms → Bacteria → Acidobacteria	2203	Open in IMG/M
3300027842\|Ga0209580_10277796	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300029817\|Ga0247275_1003403	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9239	Open in IMG/M
3300029951\|Ga0311371_11116928	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300030503\|Ga0311370_11374338	Not Available	749	Open in IMG/M
3300031057\|Ga0170834_105454925	All Organisms → cellular organisms → Bacteria	2509	Open in IMG/M
3300031716\|Ga0310813_10728948	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300031754\|Ga0307475_10273318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1355	Open in IMG/M
3300031754\|Ga0307475_11534214	Not Available	510	Open in IMG/M
3300031823\|Ga0307478_10005879	All Organisms → cellular organisms → Bacteria	8564	Open in IMG/M
3300031910\|Ga0306923_12554406	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031962\|Ga0307479_10122464	Not Available	2538	Open in IMG/M
3300031962\|Ga0307479_10484931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1220	Open in IMG/M
3300031962\|Ga0307479_11253044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300032160\|Ga0311301_12207678	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300032174\|Ga0307470_10025305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2746	Open in IMG/M
3300033433\|Ga0326726_12421065	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.64%
Host-Associated	Host-Associated	16.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.82%
Aquatic	Environmental → Aquatic	21.82%
Plants	Host-Associated → Plants	14.55%
Human	Host-Associated → Human	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.09%
Freshwater	Environmental → Aquatic → Freshwater	20.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Peat	Environmental → Terrestrial → Peat	2.73%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Digestive System	Host-Associated → Human → Digestive System	1.82%
Roots	Host-Associated → Plants → Roots	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.00%
Loam	Environmental → Terrestrial → Soil → Loam	16.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.73%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.73%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.82%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.73%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.27%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.82%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.82%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026998	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_103643941	3300001867	Forest Soil	MDEALKAKLDEARQRMNSQQAGINAGRQHDDRATREWARGKQRPANAERAQFRNSLTDEDRGQIEERIQQLLDDNPA
Ga0062387_1009204202	3300004091	Bog Forest Soil	MALKRHNMDEALKAKLDEARERMNSQQAGINADRNDDDRATREWARGKQRPANAERAQFRNSLTDEDRRQIEE
Ga0058863_114062902	3300004799	Host-Associated	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLTNEDLEQIEERIEQLI*
Ga0058860_112672471	3300004801	Host-Associated	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFR
Ga0070714_1018071542	3300005435	Agricultural Soil	MDDAVKAKLDEARERMNSQQSGINADRRHDDRATREWARGKQRPANAERVQLRNSLTEEDRREIEERIQQLLDDNPALS
Ga0070713_1022012741	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MDTTLKVKLDEARKRLASTQDRINANRRHDDHAMREWARGEQRPANRDRAQFRDSFTNDERSQIEDRLQQ
Ga0070710_110990042	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MDEALKAKLDEARKRMNSQQAGITANRKHDDPAMREWARGKQRPANTERAQFRASLTDEDRS
Ga0070734_101295781	3300005533	Surface Soil	MDEALRAKLDEARARLNSRQAGINAARKDEDRATREWARGKQRPANAERTQFRNSLTDEDRRQIEERIQQLLDDNP
Ga0070684_1011157862	3300005535	Corn Rhizosphere	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLTNEDLEQIEERIEQL
Ga0070730_104694371	3300005537	Surface Soil	MVVADNHMDQALKTKLDEARNRMNGQQTGINANRKHADPAMREWARGKQRPANAERAQFRNSLTDGDRNQIEE
Ga0070733_105120201	3300005541	Surface Soil	MNNILRAKLDEARKRMNSEQAGINTNRKHDDPAMRAWARGKQRPANAERAQFR
Ga0070732_100276385	3300005542	Surface Soil	MVVTNNDMDDALKTKLDEARNRMNSQQAGINANRKHDDPAMREWARGKQRPANA
Ga0070732_103736691	3300005542	Surface Soil	MDEALRAKLDEARARLNSGQAGINADRKDDDRAIREWARGKQRPANAERTQFRNSLTDEERNQIEERIQQLLDE
Ga0070732_107224941	3300005542	Surface Soil	MDEALKARLDEAQKRMNSQQAGINANRKHDDPAMREWARGKQRPANTERAQFRASLTDEDRSQIEERIEQLVHDNPTL
Ga0066670_108898081	3300005560	Soil	MDEALRAKLDEARKRMNIQQAGINADRKDDDPAMREWAREKQKPANAERAEFRNSLTDEERNQ
Ga0066670_109137951	3300005560	Soil	MDEALKAKLDEARTLMNTQQAGINANRGHEDTAIREWARGKQGPTNKKRAQFRASLTDKDRSQIEERIERLV
Ga0070664_1011107282	3300005564	Corn Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNEDLEQIEERIEQLVRENPALSSGTTGAVD
Ga0070664_1020972651	3300005564	Corn Rhizosphere	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANDERELFRASLTNEDLEQIEERIEQLI*
Ga0068857_1008215122	3300005577	Corn Rhizosphere	MDDVLKAKLDEARERMKSQQAGINANRKHDDRAMREWARGKQRPANAERDQFRAS
Ga0068854_1006444183	3300005578	Corn Rhizosphere	MDDALKAKLDEARERMSSQQAGINENRKHDDPAMREWARGKQRPANAERAQFRAALTDE
Ga0068864_1001237484	3300005618	Switchgrass Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNEDLEQIEERIEQLVREN
Ga0070716_1008080213	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDEALKAKLDQARERMNSQQAGINANRKHDDPAMREWARGKQRPANAERAQFRASLTDEDRRQIEERIDQLVR
Ga0070716_1014756412	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDEALRVRLDEARARLNSQQDGINASRKHDDPAMREWARGKQRPANAERAQFRNSLT
Ga0070712_1016455492	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDEALKAKLDEARERMNSQQAGINADRKHDDRATREWARGKQRPANAERVQLRNSLTEE
Ga0070712_1018752971	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNPPKPDGLKRHNMDEALKAKLDEARERINSRQAAINAERKDDDRATREWARGNQRPANAERARFRNSLTDEDRKQIEERIQQLLDDNP
Ga0068871_1009135981	3300006358	Miscanthus Rhizosphere	MDEALKAKLDEARERMNGQQAGINADRKHDDPAMRQWARGKQRPANAERARFRNSLYCVMRERW*
Ga0066659_112756792	3300006797	Soil	MDEALKAKLDEARERMNSQQAGINANRKHDDPAMREWARGKQRPANAERAQFRNSLTDEDRRQIEEHIQQLLDDNPALSPANARTL
Ga0066660_106900361	3300006800	Soil	MDEALKAKLDEARTLMNTQQAGINANRGHEDTAIREWARGKQGPTNKKRAQFRASL
Ga0075425_1015974402	3300006854	Populus Rhizosphere	MDDALKAKLNEARNRMNSQQAGINANRKHDDPAMREWARGKQRPANAERARFRKSLTDEERNQIEERI
Ga0079219_113470761	3300006954	Agricultural Soil	MDETLKAKLNEARKRMNSQQAGINANRKHDDPAIREWARGRQRPANTERAQFRASLTDEDRSQIEERIEQLLHDNPTLSLANAQPLDVK
Ga0102924_13940821	3300007982	Iron-Sulfur Acid Spring	MDAALKAKLDEARQRMNSRQFGINAERKHDDQATREWGRGKQRPANAERARFRESLTDEDRSQIDERMRQGCVRAGRRHSRSSISS*
Ga0105243_131029662	3300009148	Miscanthus Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNEDLEQIEERIEQLVRENPALSSVTTGAVDSK
Ga0116128_11329602	3300009518	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDEDRSQI
Ga0116218_11863262	3300009522	Peatlands Soil	MDGALKAKLDEARERMNSQQAGINADRKREDRATREWARGKQRPANAERALFRNSLTDEDRRQI
Ga0116112_10939722	3300009636	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIE
Ga0116110_10405793	3300009643	Peatland	MDATLKAKLDEAREWMNSQQDGINANRKHGDVAMREWARGKQRPANAERAQFRKSLTD
Ga0116223_100923243	3300009839	Peatlands Soil	MDATLKAKLDEAREWMNSQQDGINAKHKHGEVAMREGAAGKQRAANAEGAQVRKSLTAEHRS
Ga0136449_1024310551	3300010379	Peatlands Soil	MDEALKAKLDEARERMNSQQDGINANRKHDDVAMREWARGRQRPANAERAQFRKSLTDEDRSQIEERIEQLVHDNPTLSSS
Ga0134126_103515441	3300010396	Terrestrial Soil	MDDALKPKLYEARARMSSQQAGINENRKHDDPAMREWARGKQRPANAERAQFRAALT
Ga0134124_102294724	3300010397	Terrestrial Soil	MDDALKAKLYEARARMSSQQAGINENRKHDDPAMREWARGKQRPANAER
Ga0134121_106922163	3300010401	Terrestrial Soil	MDDALKPKLYEARARMSSQQAGINENRKHDDPAMREWARGKQRPANAERAQFR
Ga0137365_104653752	3300012201	Vadose Zone Soil	MDEALKVKLNEARKRMNSQQVGINANRKHDDPAMREWARGRQRPANTERAQF
Ga0137358_108798381	3300012582	Vadose Zone Soil	MDEALKARLDEARQRMNSQQAGINTNRTHDDPAMREWARGKQRPANAERAQFRNSLTDENRSQIEERIEQLLHNNPTLSHTN
Ga0137416_108533011	3300012927	Vadose Zone Soil	MDEALKAKLDEARQRMNSQQAGINANRKHDDPAMREWARGKQRPANAERAQFRNSLTDENRSQIEERIEQLLHNNPTLSPTNAR
Ga0164302_107625231	3300012961	Soil	DEARERMNSQQAGINADRKHDDPAMRQWARGKQRLANAERARFRNSLYCLMRERW*
Ga0157371_100570715	3300013102	Corn Rhizosphere	MNDRLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLTNEDLEQIEERIEQLI*
Ga0163163_132353921	3300014325	Switchgrass Rhizosphere	MDDVLKAKLDEARERMKSQQAGINANRKHDDRAMREWARGKQRPANAERDQFRASLTDEDIEQIEERIEQLAHD
Ga0182008_100465251	3300014497	Rhizosphere	MDDALKAKLDEARERMSSQQAGINENRKHDDPAMREWARGKQRPANAERAQFRAALTDDERRQIEE
Ga0187802_102101202	3300017822	Freshwater Sediment	MDETLKAKLDEARERMNSRQTAINADRKNDDRATREWARGKQRPANAERTQFRNSL
Ga0187877_13557372	3300017931	Peatland	MDEALKAKLDEARKRMNSQQDGINTNRKHDDVAMRGWARGRQRPANAERAQFRKSLTDEDRSQIEERIEQLVHDNPTLSSSNA
Ga0187854_100830221	3300017938	Peatland	MDATLKAKLDEAREWMNSQQDGINANRKHGDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIE
Ga0187850_102840382	3300017941	Peatland	MDATLKAKLDEAREWMNSQQDGISANRKHGDVAMREWARGKQRPANAE
Ga0187888_11834423	3300018008	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDE
Ga0187860_10465501	3300018014	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIEERIEQLV
Ga0187860_10993401	3300018014	Peatland	MDATLKAKLDEAREWMNSQQDGINANRKHGDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIEERIEQLV
Ga0187860_13097353	3300018014	Peatland	MDEALKAKLDEARERMNSQQDGINTNRKHDDVAMRGWARGRQRPANAERAQFRKSLTDEDRSQIEERIEQLVHD
Ga0187872_101850991	3300018017	Peatland	MDGALKAKLDEARERMNSQQAGINADRKHDDRATREWARGKQRPANAERAQFRNSLTDE
Ga0187861_102002482	3300018020	Peatland	MDATLKAKLDEARERMNSKQAGINANRKHDDVAMREWARGKQRPANAERARFRNSLTDGDRSQIEERIEQLVHDNPTLSSSNARTLGS
Ga0187889_101229264	3300018023	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGRQRPANAERAQFRKSLTDED
Ga0187855_102527471	3300018038	Peatland	MDEALKAKLHEARERFTSQQAGINTNRKHDDPARREWSRGKQRTANAERLQFRNSLTDEERTQIEER
Ga0187890_105493761	3300018044	Peatland	MDDAPKAKLDEARNRMNSQQAGTNAHGKHDDPAMREWARGKQGPANAGRAQFRKSPNDWLRSTRW
Ga0187858_1001798910	3300018057	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDEDRS
Ga0187852_13255822	3300019082	Peatland	MDATLKAKLDEAREWMNSQQDGINANRKHADVAMREWARGRQRPANAERAQFRKSLT
Ga0193723_11608121	3300019879	Soil	MDEALKAKLDEARERMNSQQAGINANRKNDDPAMREWARGKQRPANAERAQFRNSLTDEDRSHIEERIEQLVHE
Ga0206356_103455852	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLTNEDLEQIEERIEQLI
Ga0210403_102229272	3300020580	Soil	MDEVLRAKLDEARERMNSQQAGINADRKRGDRATREWARGKQRPANTERALFRNSLTDEDRKQI
Ga0210401_105275071	3300020583	Soil	MDEALKAKLDEARERMNSQQAGINANRKHDDPAMREWARGKQRPANAERAQFRNSLTDEDRSQIEERIEQLVHENPTLSPRRP
Ga0210406_100958271	3300021168	Soil	MDEALKAKLDEARQRMNSQQAGINASRKHDDPAMREWARGKQRPANAERAQFRVSLSDEERSQIEERIDQLVRDNPTLSPMNARPLDSKR
Ga0210400_114667082	3300021170	Soil	MDEGLKAKLDEARKRMNSLQAGINANRKHDDPAMREWARGKQRPANAERAQFRDSLSDEDRSQIEERIEELVRDNPTLSPTNARPLDSK
Ga0210396_102157274	3300021180	Soil	MNEALRAKLDEARERMNSQQAGINADRKNDDRATREWARGKQRPANAERAQLRNSLTDEDRKQIEERIQQLLDDNPSLSPTN
Ga0210396_116654441	3300021180	Soil	MNEVLRAKLDEARERMNRQQAVINADRKNDDRATREWARGKQRPANAERAQLRNSLTDEDRTEIKERIQQLFDDNPALSPANA
Ga0210390_103700711	3300021474	Soil	MDEALRAKLDDARARLNSRQAGINADRKDEDRATREWARGKQRPANAERTQFRNSLIDEDRRQIEERIQQLLDD
Ga0210409_101155842	3300021559	Soil	MEKGNNMDDALKAKLDEARQWMSSQQAGINADRKHGDRATREWARGKQRPANAERAQLRNSLTDEDRRQIEERIQQLLDDNPA
Ga0207416_12589952	3300025134	Iron-Sulfur Acid Spring	LDAALKAKLDEARQRLNSRQFGINAERKHNDQATREWGRGKQRPANAERARFRHSLTDEDRRQIDERIAR
Ga0208455_10063371	3300025453	Peatland	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIEERIE
Ga0208455_10420171	3300025453	Peatland	MDATLKAKLDEAREWMNSQQDGINANRKHGDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIEERIEQLVHDNPTLSSSNARTLGSK
Ga0208188_10098505	3300025507	Peatland	MDATLKAKLDEAREWMNSQQDGINANRKHGDVAMREWARGKQRPANAERAQFRKSLTDEDRSQIEERIEQLVH
Ga0207654_104735711	3300025911	Corn Rhizosphere	MDDVLKAKLDEARERMKSQQAGINANRKHDDRAMREWARGKQRPANAERDQFRASLTDEDLEQIEERIEQLAHDYPTLS
Ga0207707_114975282	3300025912	Corn Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNEDLEQIE
Ga0207671_106524941	3300025914	Corn Rhizosphere	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLTNEGLEQIEERIE
Ga0207652_100269641	3300025921	Corn Rhizosphere	KGRPMNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLTNEDLEQIEERIEQLI
Ga0207700_101911922	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRA
Ga0207664_104124993	3300025929	Agricultural Soil	MDDALKAKLNEARNRMNSQQAGINANRKHDDPAMREWARGKQRPANAERARFRKSLTDEERNQIEERIQQ
Ga0207665_103024711	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MDDALKTKLDQARKRINGQQTGINTNRTHADPAMREWARGKQRPANAERDQFRNSLTEGDREQIEERIQQLLDDNPTLSVAND
Ga0207711_116613682	3300025941	Switchgrass Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNEDLEQIEERIEQL
Ga0207661_101135964	3300025944	Corn Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNED
Ga0207640_101868621	3300025981	Corn Rhizosphere	MDDALKAKLDEARARMSSQQAGINDNRKHDDPAMREWARGKQRPANADRAQFRASLTDEERRQIEERIEQLVHDNPTLSPMNARA
Ga0207676_102393241	3300026095	Switchgrass Rhizosphere	MNDRLRAKLNEARERMKCQQAGINMNRKHDDPAMREWARGKQRPANAERELFRASLTNEDLEQIEERIEQLVRENPA
Ga0208369_10094361	3300026998	Forest Soil	MDEGLKAKLDEARKRMNSLQAGINANRKHDDPAMREWARGKQRPANAERAQFRDSLSDEDRSQIEERIEELVRD
Ga0209214_10302881	3300027071	Forest Soil	VDEALKAKLDEARERMNSQQAGINANRKHDDPAMREWARGKQRPANAERAQFRNSLTDEDRSQIEERIEQLVHE
Ga0209003_10878922	3300027576	Forest Soil	MALKRHNMDEALKAKLDEARERLNSQQAGINADRKHDDRATREWARGKQRPANAERAQLRNSLTDEDRRQIE
Ga0209580_100265571	3300027842	Surface Soil	MVVTNNDMDDALKTKLDEARNRMNSQQAGINANRKHDDPAMREWARGKQRPANAKRAQFRNSLTEGDRKQI
Ga0209580_100382862	3300027842	Surface Soil	MDEALKAKLDEARKRMNSQQAGINANRKHDDPAMREWARGQQRPANTERAQFRASLTDEDRSQIEERIEQLVHDNPTLSLA
Ga0209580_102777962	3300027842	Surface Soil	MDEALKARLDEAQKRMNSQQAGINANRKHDDPAMREWARGKQRPANTERAQFRASLTDEDRSQIEERIEQLVHDNPTLS
Ga0247275_100340312	3300029817	Soil	MDEALKAKLDEARKRMNSQQDGITANRKHDDVAMREWARGKQRPANAERAQFRKSL
Ga0311371_111169283	3300029951	Palsa	MDATLKTKLDEARERMNNEQDRINANRKHDDPVMREWARGRQRPANAERDQFRNSLTDEDRSQIEERIQ
Ga0311370_113743382	3300030503	Palsa	MRRIVGGRQMDEALRAKLDEARARLNSRQPGINTDRKDVDRATRECARGKQRPANAERTQFRNSLND
Ga0170834_1054549255	3300031057	Forest Soil	MALKRHNMDEALKAKLDEARERMNSQQAGINADRQHDDRATREWARGKQRPANAERALFRSSLTDEDRRQIEERIQQLLDDNPALS
Ga0170834_1090397131	3300031057	Forest Soil	MDAALRAKFDEARERMNSQQAGINADRKGEDRAMREWARGKQRPANAE
Ga0310813_107289481	3300031716	Soil	MNHHLRAKLDEARERMKGHQEGINANRKHDDPAIRLWARGKQRPANAERELFRASLT
Ga0307475_102733181	3300031754	Hardwood Forest Soil	MDDALRAKLDEARARLNSQQAGINANRKHDDQAMREWARGEQRPANAERLSSGSR
Ga0307475_115342141	3300031754	Hardwood Forest Soil	MDEALKAKLDKARERMNREQAAINADRKHDERATREWARGKQRPANAERTHFKNSLTDGDRSQIEERIQQLLDNNP
Ga0307478_1000587911	3300031823	Hardwood Forest Soil	MDEALRAKLDEARARLNSGQAGINADRKDEDRAIREWARGKQRPANAERTQFRNSLTDEDRRQIEERIQQLLDDFATHLPACLFR
Ga0306923_125544061	3300031910	Soil	MDDRLRAKLDEARKRMNDHQAGINANRKDDDLAIRQWARGKQRPANVERDQFRASLTNEDLEQIEERLEQLVRENLGLSSSSVGTVDP
Ga0307479_101224643	3300031962	Hardwood Forest Soil	MEKGNNMDDVLKAKLDEARQWMSSQQAGINADRKHDDRATREWARGKQRPANAERAQLRNSLTDEDRRQIEQRIQQ
Ga0307479_104849311	3300031962	Hardwood Forest Soil	MDEALIAKLDEARKRMNSQQAGINANRKHDDPATREWARGKQRPANAERAQF
Ga0307479_112530441	3300031962	Hardwood Forest Soil	MDDALKTKLDEARNRMNGQQAGINTNRKHADSARLEWARGKQRPANAERAQFRNSLTD
Ga0311301_122076781	3300032160	Peatlands Soil	MDEALKAKLDEARERMNSQQDGINANRKHDDVAMREWARGRQRPANAERAQFRKSLTD
Ga0307470_100253053	3300032174	Hardwood Forest Soil	VLHQTHRMEKGNNMDEALKAKLDEARQRMSSQQAGINADRKHDDRATREWARGKQRPANAERAQFRNSLTDEDRRQIEERIQQLLDDNPAL
Ga0326726_124210652	3300033433	Peat Soil	MDDTLREKLDEARARMNSQQAGINANRKHDDPAMREWARGKQRPANAERAQFRNSLTDEDRPD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087639

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign