Metagenome / Metatranscriptome Family F087633

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087633
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	51 residues
Representative Sequence	MAKSNDATRKSHTHFEQVPIEVVKKIAEQDVSKDKKAGTARVGAEPPSRKKG
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.34 %
% of genes near scaffold ends (potentially truncated)	29.09 %
% of genes from short scaffolds (< 2000 bps)	85.45 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.636 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02518	HATPase_c	10.91
PF03965	Penicillinase_R	1.82
PF00120	Gln-synt_C	0.91
PF13701	DDE_Tnp_1_4	0.91
PF02566	OsmC	0.91
PF02446	Glyco_hydro_77	0.91
PF00753	Lactamase_B	0.91
PF02086	MethyltransfD12	0.91
PF10615	DUF2470	0.91
PF13492	GAF_3	0.91
PF08308	PEGA	0.91
PF07638	Sigma70_ECF	0.91
PF02910	Succ_DH_flav_C	0.91
PF00512	HisKA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.82
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	1.82
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.91
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.91
COG1640	4-alpha-glucanotransferase	Carbohydrate transport and metabolism [G]	0.91
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.91
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.91
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.36 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	27.27 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	15.45 %
Unclassified	root	N/A	10.00 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.27 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15.45 %
Unclassified	root	N/A	10.00 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.27 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	15.45 %
Unclassified	root	N/A	10.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.27 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	15.45 %
Unclassified	root	N/A	10.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.27 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	15.45 %
Unclassified	root	N/A	10.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	27.27 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	15.45 %
Unclassified	root	N/A	10.00 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100544281	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300000574\|JGI1357J11328_10200036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300000787\|JGI11643J11755_11520352	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300002121\|C687J26615_10013186	All Organisms → cellular organisms → Bacteria	1996	Open in IMG/M
3300004114\|Ga0062593_102134098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300004156\|Ga0062589_101886379	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300004157\|Ga0062590_100489337	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300004157\|Ga0062590_101435001	Not Available	688	Open in IMG/M
3300005093\|Ga0062594_100719114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300005289\|Ga0065704_10295592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300005295\|Ga0065707_10677767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300005331\|Ga0070670_101490139	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005334\|Ga0068869_100011015	All Organisms → cellular organisms → Bacteria	5923	Open in IMG/M
3300005339\|Ga0070660_100376259	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300005353\|Ga0070669_101931409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300005356\|Ga0070674_101127816	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	693	Open in IMG/M
3300005364\|Ga0070673_100206943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1692	Open in IMG/M
3300005444\|Ga0070694_100016265	All Organisms → cellular organisms → Bacteria	4682	Open in IMG/M
3300005445\|Ga0070708_101158439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300005471\|Ga0070698_100790900	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300005471\|Ga0070698_100850852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300005518\|Ga0070699_100421862	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1207	Open in IMG/M
3300005518\|Ga0070699_100847963	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005536\|Ga0070697_101471262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300005542\|Ga0070732_10037259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2786	Open in IMG/M
3300005544\|Ga0070686_100481584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	960	Open in IMG/M
3300005545\|Ga0070695_100209211	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1399	Open in IMG/M
3300005545\|Ga0070695_100634757	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	842	Open in IMG/M
3300005578\|Ga0068854_100836518	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005617\|Ga0068859_100145009	All Organisms → cellular organisms → Bacteria	2449	Open in IMG/M
3300005841\|Ga0068863_101573919	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	666	Open in IMG/M
3300005843\|Ga0068860_100317045	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300005844\|Ga0068862_100640318	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300006028\|Ga0070717_10716343	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300006173\|Ga0070716_101032061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300006844\|Ga0075428_100427019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1420	Open in IMG/M
3300006845\|Ga0075421_102296099	Not Available	567	Open in IMG/M
3300006854\|Ga0075425_100110603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3132	Open in IMG/M
3300006854\|Ga0075425_101664043	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300006854\|Ga0075425_103080066	Not Available	508	Open in IMG/M
3300006880\|Ga0075429_100724590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300006918\|Ga0079216_10681317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300006918\|Ga0079216_11266220	Not Available	599	Open in IMG/M
3300007004\|Ga0079218_10002254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7497	Open in IMG/M
3300007004\|Ga0079218_12261209	Not Available	634	Open in IMG/M
3300007076\|Ga0075435_100467086	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300009093\|Ga0105240_11702335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300009094\|Ga0111539_10006959	All Organisms → cellular organisms → Bacteria	14516	Open in IMG/M
3300009098\|Ga0105245_10506115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1224	Open in IMG/M
3300009100\|Ga0075418_10820793	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300009100\|Ga0075418_11358125	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300009100\|Ga0075418_12296943	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300009156\|Ga0111538_12953144	Not Available	594	Open in IMG/M
3300009162\|Ga0075423_11160742	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300009162\|Ga0075423_11662624	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300009176\|Ga0105242_12806829	Not Available	537	Open in IMG/M
3300009177\|Ga0105248_10066360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4052	Open in IMG/M
3300010397\|Ga0134124_10103782	All Organisms → cellular organisms → Bacteria	2478	Open in IMG/M
3300010399\|Ga0134127_10752685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1019	Open in IMG/M
3300011433\|Ga0137443_1057322	All Organisms → cellular organisms → Bacteria → Acidobacteria	1070	Open in IMG/M
3300012146\|Ga0137322_1034049	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300012225\|Ga0137434_1048154	Not Available	646	Open in IMG/M
3300013306\|Ga0163162_12296392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300014325\|Ga0163163_10061767	All Organisms → cellular organisms → Bacteria → Acidobacteria	3712	Open in IMG/M
3300014968\|Ga0157379_10681715	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300015374\|Ga0132255_104600873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300019377\|Ga0190264_11004854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300020000\|Ga0193692_1002821	All Organisms → cellular organisms → Bacteria	4549	Open in IMG/M
3300021170\|Ga0210400_10296287	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300021178\|Ga0210408_10374133	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1135	Open in IMG/M
3300021947\|Ga0213856_1203041	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	858	Open in IMG/M
3300025155\|Ga0209320_10075487	All Organisms → cellular organisms → Bacteria → Acidobacteria	1571	Open in IMG/M
3300025155\|Ga0209320_10291763	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300025311\|Ga0209343_10402156	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300025312\|Ga0209321_10084038	All Organisms → cellular organisms → Bacteria	1789	Open in IMG/M
3300025899\|Ga0207642_10145904	All Organisms → cellular organisms → Bacteria → Acidobacteria	1254	Open in IMG/M
3300025903\|Ga0207680_11211519	Not Available	538	Open in IMG/M
3300025910\|Ga0207684_10210252	All Organisms → cellular organisms → Bacteria → Acidobacteria	1678	Open in IMG/M
3300025917\|Ga0207660_10245611	All Organisms → cellular organisms → Bacteria → Acidobacteria	1412	Open in IMG/M
3300025922\|Ga0207646_10733555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300025923\|Ga0207681_10561623	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300025930\|Ga0207701_11389107	Not Available	573	Open in IMG/M
3300025936\|Ga0207670_11203413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300025937\|Ga0207669_11095269	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	672	Open in IMG/M
3300025938\|Ga0207704_11758363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300025942\|Ga0207689_10003332	All Organisms → cellular organisms → Bacteria	14715	Open in IMG/M
3300025942\|Ga0207689_10257278	All Organisms → cellular organisms → Bacteria → Acidobacteria	1444	Open in IMG/M
3300025960\|Ga0207651_10214379	All Organisms → cellular organisms → Bacteria	1552	Open in IMG/M
3300026075\|Ga0207708_10165477	All Organisms → cellular organisms → Bacteria → Acidobacteria	1748	Open in IMG/M
3300026095\|Ga0207676_10679010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	996	Open in IMG/M
3300026095\|Ga0207676_11058254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300026095\|Ga0207676_11302914	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	721	Open in IMG/M
3300027815\|Ga0209726_10011376	All Organisms → cellular organisms → Bacteria → Acidobacteria	8764	Open in IMG/M
3300027815\|Ga0209726_10178471	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1145	Open in IMG/M
3300027873\|Ga0209814_10036111	All Organisms → cellular organisms → Bacteria	2048	Open in IMG/M
3300027876\|Ga0209974_10061632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1270	Open in IMG/M
3300027886\|Ga0209486_10101407	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1528	Open in IMG/M
3300028381\|Ga0268264_11172057	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300030006\|Ga0299907_10195688	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1669	Open in IMG/M
3300030606\|Ga0299906_10282891	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1298	Open in IMG/M
3300030619\|Ga0268386_10156176	All Organisms → cellular organisms → Bacteria → Acidobacteria	1736	Open in IMG/M
3300030619\|Ga0268386_10756044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300031228\|Ga0299914_10628560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300031229\|Ga0299913_11071002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	770	Open in IMG/M
3300031538\|Ga0310888_10507782	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300031562\|Ga0310886_10586135	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300031965\|Ga0326597_10165099	All Organisms → cellular organisms → Bacteria	2630	Open in IMG/M
3300032075\|Ga0310890_10313534	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300032180\|Ga0307471_100942273	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	1031	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.36%
Host-Associated	Host-Associated	43.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.09%
Plants	Host-Associated → Plants	43.64%
Aquatic	Environmental → Aquatic	7.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.36%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Sediment	Environmental → Aquatic → Sediment	2.73%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.18%
Loam	Environmental → Terrestrial → Soil → Loam	16.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.55%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.18%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.18%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.55%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	2.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012146	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT400_2	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021947	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - G-2016_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025311	Groundwater microbial communities from Rifle, Colorado - Rifle CSP2_plank lowO2_0.2 (SPAdes)	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1005442813	3300000364	Soil	MAKSTGAPRKSQTHFEQVPIEAVKKIAEQDVFTVKEPGTARAGAKPTSSKKG*
JGI1357J11328_102000361	3300000574	Groundwater	TRKSQTHFEQVPIEFVKKIADQDVSKDKKAGTVRVSAEPTSRKKG*
JGI11643J11755_115203522	3300000787	Soil	MAKSNDAPRKSRTHFEQVPLEVVKKIXEQDVPTDGKKTGTARADGEPTSSKKRPAPVRAGTFNP*
C687J26615_100131863	3300002121	Soil	MAKSNDATRKSHTHFEQVPIEVVKKIAEQDVSKDKKGGAAGVGVEPTSRKKG*
Ga0062593_1021340981	3300004114	Soil	MAKSNAATPKKPPRHFEQVPIEVVKKIAELDARKDKKAGTARVGVQPTSRKKG*
Ga0062589_1018863791	3300004156	Soil	MAKPKDATRKSPTHFDQVPIEVVKKIAEQDVPEDKRVGSSGARVEPTSRKKG*
Ga0062590_1004893372	3300004157	Soil	MAKPKDATRKSPTHFDQVPIEVVKKIAEQDVPEDKRVGSSGARVGPPSRKKG*
Ga0062590_1014350011	3300004157	Soil	MAKLNPAPRKSHTHFEQVPIDVVKKTAEADASKDKKVGAARAGVEPTSRKRG*
Ga0062594_1007191142	3300005093	Soil	MAKSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR*
Ga0065704_102955923	3300005289	Switchgrass Rhizosphere	MAKPNEATRKPQTHFEQVPIEVVKKIAEPDAPKDKKVGTAHTGVEPTSRKKG*
Ga0065707_106777671	3300005295	Switchgrass Rhizosphere	MAKPKDATRKSPTHFEQVPIEVVKKIAEQDVPEDKRVGTSGVRVEPTSRKKG*
Ga0070670_1014901391	3300005331	Switchgrass Rhizosphere	MAKPKDTTRKSPTHFDQVPIEVVKKIAEQDVPEDKRVGSSGARVGPTSRKKG*
Ga0068869_1000110152	3300005334	Miscanthus Rhizosphere	MAKSSGARRKSPTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR*
Ga0070660_1003762592	3300005339	Corn Rhizosphere	MPKSNTAPRKSRTHFEQVPIEVVKKVAEPDVSKDKKAGPAHVAVKSPSRKQG*
Ga0070669_1019314092	3300005353	Switchgrass Rhizosphere	TYCTAMAKPKDTTRKSPTHFDQVPIEVVKKIAEQDVPEDKRVGSSGARVGPTSRKKG*
Ga0070674_1011278162	3300005356	Miscanthus Rhizosphere	KSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR*
Ga0070673_1002069433	3300005364	Switchgrass Rhizosphere	GATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR*
Ga0070694_1000162653	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSPTHFEQVPIEVVKKIAEPDVSKDKKARTADVAVEPTSRKKG*
Ga0070708_1011584391	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	QTHFEQVPIEVVKQTAEQDVSKDKKAGTARAGAEPTSTRKKG*
Ga0070698_1007909002	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVKKIAEPDVSKDKKAGTAYVAVEPTSRKKG*
Ga0070698_1008508522	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAKSTDATRKPRTHFEQVPIDIAKKIAEQNDAKDKKAGTARVGVEATSRKKR*
Ga0070699_1004218621	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSPTHFEQVPIEVVKKIAEPDVSKDKKAGTADVTVEPTSRKKG*
Ga0070699_1008479633	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNGASPKPQTHFEQIPVEVVKKVAAPDLPNGKKAGTARVGAKPTSRKKG*
Ga0070697_1014712622	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVKKIAEPDVSKHKKAGTAYVAVEPTSRKKG*
Ga0070732_100372591	3300005542	Surface Soil	MAKSNNATPKSQTHFEQVPIEVVKKIAEPEVAKDKKAGTGPAGAERTDRKKS*
Ga0070686_1004815841	3300005544	Switchgrass Rhizosphere	MAKPKDATRKSPTHFEQVPIEVVKKIAEQDVPEDKRVGSSGARVEPTSRKKG*
Ga0070695_1002092112	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVKKIAEPDVSKDKKARTADVAVEPTSRKKG*
Ga0070695_1006347572	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	NTGIDVRPVTVPRMAKLNPAPRKSHTHFEQVPIDVVKKTAEADASKDKKVGAARAGVEPTSRKRG*
Ga0068854_1008365183	3300005578	Corn Rhizosphere	MAKSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKK
Ga0068859_1001450094	3300005617	Switchgrass Rhizosphere	MAKSTGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR*
Ga0068863_1015739191	3300005841	Switchgrass Rhizosphere	GATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR*
Ga0068860_1003170453	3300005843	Switchgrass Rhizosphere	MAKSTAATRKSQTHFEQVPIEIVKKIVEPDAPRDKRVGTARAGVGPTSRKKTGTSNR*
Ga0068862_1006403182	3300005844	Switchgrass Rhizosphere	MAKSNDATRKSQTHFEQVPIEVVKKKIAEQDATRDKKAGTARVGVEPPPKKKG*
Ga0070717_107163432	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTKSKNASRESQTHFEQVPVEVVKRIAEPGVSKEQKAGTAQVASKRTSRKKS*
Ga0070716_1010320612	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	KSQTHFEQVPIEVVKKIAEPDVSKDKKAGTADVAVVRTSRKKG*
Ga0075428_1004270193	3300006844	Populus Rhizosphere	MAKPNDAPRKSRTHFEQVPIEVVKKIAEQDVPNGKKAGTARADGAPTSRKERPNR*
Ga0075421_1022960992	3300006845	Populus Rhizosphere	MAKPNDAPRKSRTHFEQVPIEVVKKIAEQDAPNGKKAGTARADGAPTSRKERPNR*
Ga0075425_1001106036	3300006854	Populus Rhizosphere	VAKSNNPARKSQTHFEQVPVEVLKKIAKPDASKGKKGGTAHVAVEPAARKKG*
Ga0075425_1016640432	3300006854	Populus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVKKIAEPDVSKDKKAGTANVAVEPTSRKKG*
Ga0075425_1030800662	3300006854	Populus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVKKIAEPDVSKHKKAGTADVAVEPTSRKKG*
Ga0075429_1007245901	3300006880	Populus Rhizosphere	MAKSPDATRKPQTHFEQVPIENVKKIAAPDVSNDKKAGAPRAGAEPTSRKKS*
Ga0079216_106813171	3300006918	Agricultural Soil	MARVGVLFSMAKSNEAARKSQTHFEQVPIEVVKKIAHQDVSMGKKAGLVRVRAEPTSGKKG*
Ga0079216_112662202	3300006918	Agricultural Soil	MAKSNDAARKSQTHFEQVPIEIVKKIAELDMSKDKKAGTTRVGAEPISRKKV*
Ga0079218_100022542	3300007004	Agricultural Soil	MAKSNKATRKSNTHFEQVPLKVVKKIAEPDPPKDKKVGTARIGR*
Ga0079218_122612091	3300007004	Agricultural Soil	MAKSHDATRKSHTHFEQVPLEVVEKIAEPDAPKDKKVGADRMGVKPTYTKKR*
Ga0075435_1004670861	3300007076	Populus Rhizosphere	NNPTRKSQTHFEQVPVEVLKKIAKPDASKGKKGGTAHVAVEPAARKKG*
Ga0105240_117023351	3300009093	Corn Rhizosphere	RTHFEQVPIEVVKKVAEPDVSKDKKAGPAHVAVKSPSRKQG*
Ga0111539_100069595	3300009094	Populus Rhizosphere	MAKSNTARRKSHTHFEQIPIKVVKKIAEPEAPKNHKVARMGVEPISRKKG*
Ga0105245_105061153	3300009098	Miscanthus Rhizosphere	MAKSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR*
Ga0075418_108207932	3300009100	Populus Rhizosphere	FEQVPIEVVKRIAEPDVSKDKKARTADVAVEPTSRKKG*
Ga0075418_113581252	3300009100	Populus Rhizosphere	MAKPNDAPRKSRTHFEQVPIEVVKKIAEQDVPNGKKAGTALADGAPTPRKERPNR*
Ga0075418_122969431	3300009100	Populus Rhizosphere	QTHFEQVPLEVVKRIADLDVSKDKKAGTARVGAAPTSRKKG*
Ga0111538_129531441	3300009156	Populus Rhizosphere	MAKPKDATRKSQTHFEQVPIEVVKKIAEQDVPKDKNVGTRGVRVEPASRKKGQT*
Ga0075423_111607422	3300009162	Populus Rhizosphere	MPKSNNATRKSPTHFEQVPIEVVKRIAEPDVSKDKKARTADVAVEPTSRKKG*
Ga0075423_116626242	3300009162	Populus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVKKIAEPDGSKDKKAGTANVAVEPTSRKKG*
Ga0105242_128068291	3300009176	Miscanthus Rhizosphere	MAKSNDATRKSQTHFEQVPIEVVKKIAEQDAPKDKKVGTARAGVEAISRKKR*
Ga0105248_100663606	3300009177	Switchgrass Rhizosphere	MAKSKVSTRKSHTHFEQVPIEIVKKIAEQDAPRNAKAGTARAGVEPTSRKKR*
Ga0134124_101037821	3300010397	Terrestrial Soil	KSNDAARKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR*
Ga0134127_107526852	3300010399	Terrestrial Soil	EQVPIEVVKKIAEQDVPEDKRVGSSGARVEPTSRKRG*
Ga0137443_10573222	3300011433	Soil	MAKSNDATRKSRTHFEQVPLAVVKKIALQDAPKDKKAGTARMGVEPTSRKKR*
Ga0137322_10340491	3300012146	Soil	MAKWNDATRKSQTHFEQVPIEVVKKIADQDVSKDKKAGTVRVGAEPTSRKK
Ga0137434_10481542	3300012225	Soil	MAKWNDATRKSQTHFEQVPIEVVKKIADQDVSKDKKAGTVRVGAEPTSRKKG*
Ga0163162_122963921	3300013306	Switchgrass Rhizosphere	MAKSSGGPRKSQTPFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR*
Ga0163163_100617674	3300014325	Switchgrass Rhizosphere	MAKSSRATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR*
Ga0157379_106817153	3300014968	Switchgrass Rhizosphere	MAKSSRATRKSQTHFEQVPIEVVKKKIAEQDATRDKKAGTARVGVE
Ga0132255_1046008731	3300015374	Arabidopsis Rhizosphere	MAKPKDATRKSPTHFEQVPNEVVKKIAEQDVPEDKRVGSSGARVEPTSRKKG*
Ga0190264_110048541	3300019377	Soil	NATRKSQTHFEQVPIEVVKKIAEQDVSKNKKAGTARVGAEPTSRKKG
Ga0193692_10028219	3300020000	Soil	MAKAKTATRKSRTHFEQVPVEVVKKIAEQDVAKHKKVGTTRVSVEPTSIKKG
Ga0210400_102962872	3300021170	Soil	MAKSNDVTRKSHTHFEQVPIEVVKKIAEQDVPKDKKVANARGVEPTSRKKD
Ga0210408_103741332	3300021178	Soil	MAKSDDATRKAQTHFEQVPVENVKKIAEQDVSKGKKVGADRPAAGPTARKNGSALERGTFNR
Ga0213856_12030411	3300021947	Watersheds	SNATRKSQTHFEQVPVEVVKKIATQDAPKDKKAGTARMSVDATSRKKR
Ga0209320_100754872	3300025155	Soil	MAKSNDATRKSHTHFEQVPIEVVKKIAEQDVSKDKKGGAAGVGVEPTSRKKG
Ga0209320_102917632	3300025155	Soil	MARSNDATRKSQTHFEQVPIEVVKKIADQDVSKDKKAGTARVGAEPPSRKKG
Ga0209343_104021561	3300025311	Groundwater	MARSNDATRKSQTHFEQVPIEVVKKIADQDVSKDKKAGTARVGAEPTSRKKG
Ga0209321_100840384	3300025312	Soil	MAKSNDATRKSHTHFEQVPIEVVKKIAEQDVSKDKKAGTARVGAEPPSRKKG
Ga0207642_101459042	3300025899	Miscanthus Rhizosphere	MAKSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR
Ga0207680_112115191	3300025903	Switchgrass Rhizosphere	MAKSTGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETAR
Ga0207684_102102522	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSQTHFEQVPIEVVRKIAEPDLSKDKKAGTARVAVEPTSRKKG
Ga0207660_102456112	3300025917	Corn Rhizosphere	MPKSNTAPRKSRTHFEQVPIEVVKKVAEPDVSKDKKAGPAHVAVKSPSRKQG
Ga0207646_107335552	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPKSNNATRKSPTHFEQVPIEVVKKIAEPDVSKDKKARTADVAVEPTSRKKG
Ga0207681_105616232	3300025923	Switchgrass Rhizosphere	MAKSNDATRKSQTHFEQVPIEVVKKKIAEQDATRDKKAGTARVGVEPPPKKKG
Ga0207701_113891072	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MAKPKDATRKSPTHFEQVPIEVVKKIAEQDVPEDKRVGSSGARVEPTSRKKG
Ga0207670_112034131	3300025936	Switchgrass Rhizosphere	YCSAMAKPKDATRKSPTHFEQVPIEVVKKIAEQDVPEDKRVGSSGARVEPTSRKKG
Ga0207669_110952692	3300025937	Miscanthus Rhizosphere	KSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR
Ga0207704_117583632	3300025938	Miscanthus Rhizosphere	PTRMRRARYCSSMAKSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR
Ga0207689_1000333214	3300025942	Miscanthus Rhizosphere	MAKSSGATRKSQTHFEQVPIEIVKKIADQGVPKDNKAETVRGPTPVSRKKR
Ga0207689_102572782	3300025942	Miscanthus Rhizosphere	MAKSSGARRKSPTHFEQVPIEVVKKIADQGVPKGNKAETVRGPTPVSRKKR
Ga0207651_102143793	3300025960	Switchgrass Rhizosphere	GATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETVRGPTPVSRKKR
Ga0207708_101654772	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MAKPKDATRKSPTHFEQVPIEVVKKIAEQDVPEDKRVGTSGVRVEPTSRKKG
Ga0207676_106790101	3300026095	Switchgrass Rhizosphere	FEQVPLEVVKKIAEQEVSKDKKAGTARSRVEPASRKKR
Ga0207676_110582542	3300026095	Switchgrass Rhizosphere	MAKSNDATRKSQTHFEQVPIEVVKKIADPDVSKHKKAGTARSGAERTARKKG
Ga0207676_113029142	3300026095	Switchgrass Rhizosphere	SSMAKSSGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR
Ga0209726_1001137610	3300027815	Groundwater	MAKWNDATRKSQTHFEQVPIEFVKKIADQDVSKDKKAGTVRVSAEPTSRKKG
Ga0209726_101784712	3300027815	Groundwater	MAKSNDVARKSQTHFEQVPVDVVKKLAAQDVSKDKRSGTARAGAEPTSKKKG
Ga0209814_100361114	3300027873	Populus Rhizosphere	CSPMLKSNNATRKSPTHFEQVPIEVVKKIAEPDVSKDKKARTADVAVEPTSRKKG
Ga0209974_100616322	3300027876	Arabidopsis Thaliana Rhizosphere	MTKPNEATRKPQTHFEQVPIEVVKKIAEPDSPKDKKVGTAHTGVEPTSRKKG
Ga0209486_101014072	3300027886	Agricultural Soil	MAKSNKATRKSNTHFEQVPLKVVKKIAEPDPPKDKKVGTARIGR
Ga0268264_111720572	3300028381	Switchgrass Rhizosphere	MAKSTGATRKSQTHFEQVPIEVVKKIADQGVPKDNKAETARGPTPVSRKKR
Ga0307282_103063261	3300028784	Soil	MTKTNDAARKRPTHFEQVPIEVVKKIAEEDVPKNKSKASVEPT
Ga0299907_101956881	3300030006	Soil	MTRVPVLFSMAKSSDATRKSQTHFEQVPLDVVKKIAEQDVSKDRKAGTARGAEPISRKKG
Ga0299906_102828912	3300030606	Soil	NGATRKSHTHFEQVPIEVVKKIADQDVSKDKKAGTARVGAEPTSRKKG
Ga0268386_101561762	3300030619	Soil	MTRVPVLFSMAKSNDATRKSQTHFEQVPLDVVKKIAEQDVSKDRKAGTARGAEPISRKKG
Ga0268386_107560442	3300030619	Soil	TRMTRVPVLFSMAKSKDATRKSQTHFEQVSIDVVKKIADQDVSKDKKAGTARVGAEPTSTKKGSAPERAGTVNR
Ga0299914_106285602	3300031228	Soil	MTRVPVLFSMAKSKDATRKSQTHFEQVPIDVVKKIAEQGVSKDKKTGIARVSAERIKKEG
Ga0299913_110710022	3300031229	Soil	DATRKSQTHFEQVPIDVVKRIAEQHVSKDKKAGTARVGAEPTSRKKG
Ga0310888_105077821	3300031538	Soil	MAKPNEATRKPQTHFEQVPIEVVKKIAEPDAPKDKKVGTAHTGVEPTSRKKG
Ga0310886_105861352	3300031562	Soil	MAKPNEATRKPQTHFEQVPIEVVKKIAEPDAPKDKKVRTAHTGVEPTSRKKG
Ga0326597_101650995	3300031965	Soil	MAKSNDGSRKSQTHFEQVPIEVVKKIADQDVSKDKKAGTVRVGAESTSRKKG
Ga0310890_103135341	3300032075	Soil	TRKPQTHFEQVPIEVVKKIAEPDSPKDKKVGTAHTGVEPTSRKKG
Ga0307471_1009422732	3300032180	Hardwood Forest Soil	MPKSNDATRKPQTHFEQVPIDVVKKIAEQDVSKDKKAGTARVGVEPTSRKKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087633

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences