Metagenome / Metatranscriptome Family F087620

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087620
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	70 residues
Representative Sequence	MTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	24.77 %
% of genes near scaffold ends (potentially truncated)	45.45 %
% of genes from short scaffolds (< 2000 bps)	87.27 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.909 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (39.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.00% β-sheet: 0.00% Coil/Unstructured: 43.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF06480	FtsH_ext	4.55
PF00313	CSD	2.73
PF13271	DUF4062	2.73
PF12680	SnoaL_2	1.82
PF01243	Putative_PNPOx	1.82
PF07992	Pyr_redox_2	1.82
PF05694	SBP56	1.82
PF01695	IstB_IS21	1.82
PF04377	ATE_C	0.91
PF04020	Phage_holin_4_2	0.91
PF03641	Lysine_decarbox	0.91
PF07366	SnoaL	0.91
PF00202	Aminotran_3	0.91
PF09939	DUF2171	0.91
PF02897	Peptidase_S9_N	0.91
PF00082	Peptidase_S8	0.91
PF13581	HATPase_c_2	0.91
PF01471	PG_binding_1	0.91
PF13466	STAS_2	0.91
PF00665	rve	0.91
PF05168	HEPN	0.91
PF01522	Polysacc_deac_1	0.91
PF10057	MpsC	0.91
PF08003	Methyltransf_9	0.91
PF00578	AhpC-TSA	0.91
PF13410	GST_C_2	0.91
PF01152	Bac_globin	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	4.55
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.82
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.91
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.91
COG1770	Protease II	Amino acid transport and metabolism [E]	0.91
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.91
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.91
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.91
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.91
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.91
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.91
COG2935	Arginyl-tRNA--protein-N-Asp/Glu arginylyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.91
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
All Organisms	root	All Organisms	39.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
cellular organisms	root	All Organisms → cellular organisms	39.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.55 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.18 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.73 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.36 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.82 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.91 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.91 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.36 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.82 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.91 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.91 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.36 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.82 %
Sandaracinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae	0.91 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.91 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.36 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.82 %
unclassified Sandaracinaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → unclassified Sandaracinaceae	0.91 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.91 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.36 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.82 %
Sandaracinaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → unclassified Sandaracinaceae → Sandaracinaceae bacterium	0.91 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.91 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_102065719	Not Available	1619	Open in IMG/M
3300000956\|JGI10216J12902_113161150	Not Available	578	Open in IMG/M
3300001661\|JGI12053J15887_10037603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2720	Open in IMG/M
3300002568\|C688J35102_119987722	Not Available	837	Open in IMG/M
3300004114\|Ga0062593_100171556	Not Available	1682	Open in IMG/M
3300004463\|Ga0063356_102992072	Not Available	728	Open in IMG/M
3300005328\|Ga0070676_11594834	Not Available	504	Open in IMG/M
3300005329\|Ga0070683_101711375	Not Available	605	Open in IMG/M
3300005354\|Ga0070675_100445509	Not Available	1161	Open in IMG/M
3300005435\|Ga0070714_101941196	Not Available	574	Open in IMG/M
3300005444\|Ga0070694_101162956	Not Available	645	Open in IMG/M
3300005459\|Ga0068867_100736394	Not Available	873	Open in IMG/M
3300005539\|Ga0068853_101447607	Not Available	665	Open in IMG/M
3300006031\|Ga0066651_10025938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2579	Open in IMG/M
3300006046\|Ga0066652_100247042	Not Available	1560	Open in IMG/M
3300006058\|Ga0075432_10221472	Not Available	757	Open in IMG/M
3300006173\|Ga0070716_101580047	Not Available	538	Open in IMG/M
3300006196\|Ga0075422_10226383	Not Available	778	Open in IMG/M
3300006791\|Ga0066653_10125411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1211	Open in IMG/M
3300006791\|Ga0066653_10329038	Not Available	771	Open in IMG/M
3300006800\|Ga0066660_10067374	All Organisms → cellular organisms → Bacteria	2414	Open in IMG/M
3300006804\|Ga0079221_11322901	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300006845\|Ga0075421_100062964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4683	Open in IMG/M
3300006845\|Ga0075421_100377644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1707	Open in IMG/M
3300006845\|Ga0075421_100839196	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300006854\|Ga0075425_100562575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1312	Open in IMG/M
3300006871\|Ga0075434_100015086	All Organisms → cellular organisms → Bacteria	7399	Open in IMG/M
3300006914\|Ga0075436_100327018	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300009011\|Ga0105251_10069695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1639	Open in IMG/M
3300009038\|Ga0099829_10297067	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300009088\|Ga0099830_10962200	Not Available	707	Open in IMG/M
3300009088\|Ga0099830_11525074	Not Available	556	Open in IMG/M
3300009089\|Ga0099828_10338628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1355	Open in IMG/M
3300009089\|Ga0099828_10667918	Not Available	934	Open in IMG/M
3300009089\|Ga0099828_10871734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	805	Open in IMG/M
3300009162\|Ga0075423_10747167	Not Available	1034	Open in IMG/M
3300009177\|Ga0105248_10180723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2377	Open in IMG/M
3300009840\|Ga0126313_10021521	All Organisms → cellular organisms → Bacteria	4297	Open in IMG/M
3300010038\|Ga0126315_10033280	Not Available	2699	Open in IMG/M
3300010042\|Ga0126314_10140457	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300010042\|Ga0126314_11462367	Not Available	514	Open in IMG/M
3300010044\|Ga0126310_10045390	Not Available	2407	Open in IMG/M
3300010044\|Ga0126310_10347293	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300010085\|Ga0127445_1066397	Not Available	501	Open in IMG/M
3300010400\|Ga0134122_13042269	Not Available	523	Open in IMG/M
3300010403\|Ga0134123_13263688	Not Available	523	Open in IMG/M
3300011269\|Ga0137392_10484669	Not Available	1027	Open in IMG/M
3300011269\|Ga0137392_11253880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300011270\|Ga0137391_10314422	Not Available	1350	Open in IMG/M
3300011271\|Ga0137393_10136292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2038	Open in IMG/M
3300012096\|Ga0137389_10217303	Not Available	1597	Open in IMG/M
3300012189\|Ga0137388_10813187	Not Available	866	Open in IMG/M
3300012200\|Ga0137382_10398968	Not Available	969	Open in IMG/M
3300012212\|Ga0150985_101399925	Not Available	991	Open in IMG/M
3300012358\|Ga0137368_10852820	Not Available	559	Open in IMG/M
3300012363\|Ga0137390_10651684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1018	Open in IMG/M
3300012955\|Ga0164298_11444411	Not Available	534	Open in IMG/M
3300012958\|Ga0164299_11448670	Not Available	533	Open in IMG/M
3300012961\|Ga0164302_10922510	Not Available	672	Open in IMG/M
3300012987\|Ga0164307_10220578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1304	Open in IMG/M
3300013307\|Ga0157372_13058212	Not Available	534	Open in IMG/M
3300015371\|Ga0132258_12042857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1441	Open in IMG/M
3300015371\|Ga0132258_12402656	Not Available	1320	Open in IMG/M
3300015372\|Ga0132256_100982462	Not Available	960	Open in IMG/M
3300015374\|Ga0132255_105904718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300019877\|Ga0193722_1134254	Not Available	556	Open in IMG/M
3300022756\|Ga0222622_10446708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	917	Open in IMG/M
3300022756\|Ga0222622_10525105	Not Available	848	Open in IMG/M
3300025885\|Ga0207653_10158438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → unclassified Sandaracinaceae → Sandaracinaceae bacterium	837	Open in IMG/M
3300025901\|Ga0207688_10924912	Not Available	552	Open in IMG/M
3300025911\|Ga0207654_10390991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	965	Open in IMG/M
3300025927\|Ga0207687_10485026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300025940\|Ga0207691_10069089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3191	Open in IMG/M
3300025960\|Ga0207651_10756713	Not Available	859	Open in IMG/M
3300026552\|Ga0209577_10086588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2565	Open in IMG/M
3300027388\|Ga0208995_1080794	Not Available	568	Open in IMG/M
3300027681\|Ga0208991_1027707	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300027862\|Ga0209701_10483646	Not Available	675	Open in IMG/M
3300027880\|Ga0209481_10532743	Not Available	607	Open in IMG/M
3300027882\|Ga0209590_10441154	Not Available	841	Open in IMG/M
3300027909\|Ga0209382_10165324	Not Available	2555	Open in IMG/M
3300027909\|Ga0209382_10906413	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300028707\|Ga0307291_1119979	Not Available	661	Open in IMG/M
3300028713\|Ga0307303_10015115	Not Available	1424	Open in IMG/M
3300028713\|Ga0307303_10118822	Not Available	617	Open in IMG/M
3300028754\|Ga0307297_10043078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1371	Open in IMG/M
3300028754\|Ga0307297_10043192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1369	Open in IMG/M
3300028754\|Ga0307297_10128292	Not Available	853	Open in IMG/M
3300028768\|Ga0307280_10231839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300028791\|Ga0307290_10155512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	838	Open in IMG/M
3300028793\|Ga0307299_10088655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1153	Open in IMG/M
3300028807\|Ga0307305_10105456	Not Available	1303	Open in IMG/M
3300028810\|Ga0307294_10039682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1332	Open in IMG/M
3300028811\|Ga0307292_10491108	Not Available	526	Open in IMG/M
3300028814\|Ga0307302_10163162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1082	Open in IMG/M
3300028814\|Ga0307302_10411792	Not Available	669	Open in IMG/M
3300028814\|Ga0307302_10415172	Not Available	666	Open in IMG/M
3300028819\|Ga0307296_10584376	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300028824\|Ga0307310_10412448	Not Available	672	Open in IMG/M
3300028828\|Ga0307312_10295884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1054	Open in IMG/M
3300028875\|Ga0307289_10085982	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1277	Open in IMG/M
3300028881\|Ga0307277_10167757	Not Available	956	Open in IMG/M
3300028881\|Ga0307277_10450535	Not Available	577	Open in IMG/M
3300028884\|Ga0307308_10197140	Not Available	965	Open in IMG/M
3300028885\|Ga0307304_10536375	Not Available	538	Open in IMG/M
3300031095\|Ga0308184_1056242	Not Available	520	Open in IMG/M
3300031424\|Ga0308179_1047946	Not Available	549	Open in IMG/M
3300034680\|Ga0370541_056971	Not Available	522	Open in IMG/M
3300034681\|Ga0370546_080371	Not Available	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.73%
Host-Associated	Host-Associated	27.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.91%
Plants	Host-Associated → Plants	27.27%
Aquatic	Environmental → Aquatic	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.27%
Sediment	Environmental → Aquatic → Sediment	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.45%
Loam	Environmental → Terrestrial → Soil → Loam	8.18%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.27%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010085	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031095	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_158 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1020657191	3300000956	Soil	MTLPRRPVSGGDVHARAIERLELAVDDRERSSEESKTAQGGPDKRTAGVALAAANEQVAAREAWVKYIEHGY*
JGI10216J12902_1131611502	3300000956	Soil	MILPRRPTGREVHARAIERLELAVDDRERLSEQSDAAQDGPDERTAAAPLAAATERVAAREAWVKYIEHGYY*
JGI12053J15887_100376031	3300001661	Forest Soil	MTLPRRPVRGGDVHVRAIERLDLAAGDLEHSKEERDAAHGQAEKRAAAVALAAANEQVAVREAWVKYIERAG*
C688J35102_1199877222	3300002568	Soil	MTLPRRPVSGGDVHARAIERLDLAVDDRERSSEESNAAHGGPDERTAAVVLAAANEQVAAREAWVKYIEQGY*
Ga0062593_1001715562	3300004114	Soil	MTLPRRPVSGGDVHARAIERLDLAVDDRERSSDESKAAQGGPDERTAAVALAAANEQLAAREAWAKYIEHGY*
Ga0063356_1029920721	3300004463	Arabidopsis Thaliana Rhizosphere	GGDVHARAIERLDLAVDDRERSSDESKAAQGGPDERTAAVALAAANEQLAAREAWAKYIEHGY*
Ga0070676_115948341	3300005328	Miscanthus Rhizosphere	MTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0070683_1017113751	3300005329	Corn Rhizosphere	QAIAARHRLNTGQLAMTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0070675_1004455092	3300005354	Miscanthus Rhizosphere	MTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPNERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0070714_1019411961	3300005435	Agricultural Soil	MTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVA
Ga0070694_1011629562	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0068867_1007363942	3300005459	Miscanthus Rhizosphere	MTLPRRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0068853_1014476071	3300005539	Corn Rhizosphere	MTLPRRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQLAAREAWVKYIEHGY*
Ga0066651_100259383	3300006031	Soil	MTLPRRPVRGGDVHTRAIERLDDAVDDLEHLNEGTDSAHGRPDKRTAAVALAAAHERVAAREAWVKYIEQGY*
Ga0066652_1002470422	3300006046	Soil	MTLRHRPRGGEVHARAIDRLELAVDDRERSSRESDAAVGGPDEQAAVLALAAANERVAAREAWVKYVEHGY*
Ga0075432_102214722	3300006058	Populus Rhizosphere	VHARAIERLELAVDDRERSSEESKAAQGGPDKRTAAVALAAANEQVAAREAWVKYIEHGY
Ga0070716_1015800471	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0075422_102263832	3300006196	Populus Rhizosphere	MTLPRRPVSGGDVHARAIERLDQAVDDRAHSSEQSKAAQRGPDKRTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0066653_101254113	3300006791	Soil	MTLPRRPVRGGDVHTRAIERLDEAVDDLEHLNEGTDSAHGRPDKRTPAVALAAAHERVAARE
Ga0066653_103290383	3300006791	Soil	VRHRVKAGQLAMTLRHRPRGGEVHARAIDRLELAVDDRERSSRESDAAVGGPDEQAAVLALAAANERVAAREAWVKYVEHGY*
Ga0066660_100673741	3300006800	Soil	MTLPHRPVRGGDVHARAIERLDVAVDDRERSNEESDAAQGRPDERTAALALAAANEQVAAREAWVKYIEHGY*
Ga0079221_113229011	3300006804	Agricultural Soil	VHARAIERLEVAVDDRERSSEESDAAQGRPDERTAGLALAAANEQVAAREAWVKYIEHGY
Ga0075421_1000629645	3300006845	Populus Rhizosphere	MTLPRRPVSGGDVHARAIERLELAVDDRERSSEESKAAQGGPDKRTAAVALAAANEQVAAREAWAKYIEHGY*
Ga0075421_1003776442	3300006845	Populus Rhizosphere	MTLPRRPVSGGEVHAQAIQRLDQAVDDRERSSEQSQAAQGAPDEGTAAVALAAANEQLAAREAWVKYIERGC*
Ga0075421_1008391963	3300006845	Populus Rhizosphere	VPQAIAARRRLNTGQLAMTLPRRPLRGGEVHARAIERLDVAVDDRERASEQSEAAHGGPDERTAAVALAAANEQAAAREAWVKYIEHGY*
Ga0075425_1005625751	3300006854	Populus Rhizosphere	VHARAIERLDVAVDDRERASEQSEAAHGGPDERTAAVALAAANEQAAAREAWVKYIEHGY
Ga0075434_1000150862	3300006871	Populus Rhizosphere	MTLPRRPVSGGDVHARAIERLDQAVDDRAHSSEQSKAAQRGPDKRTAAVALAAANEQVAAREAWVKYIERGY*
Ga0075436_1003270182	3300006914	Populus Rhizosphere	MTLPRRPLRGGEVHARAIERLDVAVDDRERASEQSEAAHGGPDERTAAVALAAANEQAAAREAWVKYIEHGY*
Ga0105251_100696953	3300009011	Switchgrass Rhizosphere	MTLPRRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIE
Ga0099829_102970672	3300009038	Vadose Zone Soil	MTLPRRPVRGGDVHARAIERLDVAVDDLEHASEESHAAQGRFEKRTVAVALAAANEQVAAREAWVKYIEQGH*
Ga0099830_109622001	3300009088	Vadose Zone Soil	MTLPRRPVRGGDVHARAIERLGVAVDDLEHASEESAAAQGRFEKRTVAVALAAANEQLAAREAW
Ga0099830_115250742	3300009088	Vadose Zone Soil	MTLPRRPVRGGEVHARAIERLDVAVDDLAHSSVESDAALGGPDKRTAAVALAAANEQVAARDAWVKYIEHGY*
Ga0099828_103386281	3300009089	Vadose Zone Soil	MTLPRRPVRGGDVHARAIERLDVAVDDLEHSSEESHAAQGRFDKRSAAVELAWANEQVAAREAWVKYVEHGY*
Ga0099828_106679182	3300009089	Vadose Zone Soil	LPRRPVRGGDVHARAIERLDVAVDDLERSNEENDAAQGPSDKRTTAVALAAANEQLAAREAWVKYIEHGYKQARFHG*
Ga0099828_108717342	3300009089	Vadose Zone Soil	MTLPRRPVRGGDVHARAIERLDVAVDDLEHSSEESHAAQGRPDERAVAVALAWANEQVAAREAWVKYIERGY*
Ga0075423_107471672	3300009162	Populus Rhizosphere	MTLPRRPLRGGEVHARAIERLDVAVDDRERASEQSEAAHGGPDERTAAVALAAANERVAAREAWVKYIEHGY*
Ga0105248_101807232	3300009177	Switchgrass Rhizosphere	MTLPRRPISGGDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0126313_100215217	3300009840	Serpentine Soil	MTLQRRPVSGGDVHARAIERLDLAVDDRERSSKESKAAQGGPNEPTAAVALAAANEQVAARE
Ga0126315_100332804	3300010038	Serpentine Soil	MTLQRRPVSGGDVHARAIERLDLAVDDRERSSKESKAAQGGPNEPTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0126314_101404571	3300010042	Serpentine Soil	RPTSGDDVHARAIERLDLAVDDRERSSKESKAAHGGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0126314_114623671	3300010042	Serpentine Soil	MTLQRRPVSGGDVHARAIERLDLAVDDRERSSKESKAAQGGPNEPTAAVALAAANEQVAAREAWVK
Ga0126310_100453902	3300010044	Serpentine Soil	MTLPRRPVSGGDVHARAIERLDLAVDDRERSSEESNAAHGGPNERTAAVVLAAANEQVAAREAWVKYIEHGY*
Ga0126310_103472931	3300010044	Serpentine Soil	LPRRPTSGGDVHARAIERLDLAVDDRERSSEESNAAHGGPDDRTAAVALAAANEQVAAREAWVKYIEQGY*
Ga0127445_10663971	3300010085	Grasslands Soil	VHARAIERLGVAVDDRQRSNEESDAAQGGPDERTAAVALAAANEQVAAREAWVKY
Ga0134122_130422691	3300010400	Terrestrial Soil	RRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0134123_132636881	3300010403	Terrestrial Soil	AARHRLNSGQLAMTLPRRPTRGGDVHTRAIERLELAVDDRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0137392_104846692	3300011269	Vadose Zone Soil	MTLPRRPVRGGDVHARAIERLDVAVDDLEHSSEESHAAQGRPDERAVAVALAWANEQVAAREAWVKYVERGY*
Ga0137392_112538802	3300011269	Vadose Zone Soil	MTLPRRPVRGGEVHARALERLDVAVDDLEHSSEASHAAQGRFDKRSAAVGLAWANEQVAAREAWVRYIEHGY*
Ga0137391_103144221	3300011270	Vadose Zone Soil	EKRREKVRLAMTLPRRPVRGGDVHARAIERLDVAVDDLAHSSEASHAAQGRFDKRTAAVALAAANEQVAAREAWVKYVEHGY*
Ga0137393_101362921	3300011271	Vadose Zone Soil	RREKVRLAMTLPRRPVRGGDVHARAIERLDVAVDDLEHASEESDAAQGRFDKRTVAVALAAANEQVAAREAWVKYIEQGH*
Ga0137389_102173034	3300012096	Vadose Zone Soil	MTLPRRPVRGGEVHARAIERLDVAVDDLAHSSEASHAAQGRFDKRTAAVALAAANEQVAGREAWVKYVEHGY*
Ga0137388_108131873	3300012189	Vadose Zone Soil	MTLPRRPVRGGEVHARAIERLDVAVDDLEHSSEASHAAQGRFDKRSAAVGLAWANEQLAAREAWVKYIEHGY*
Ga0137382_103989682	3300012200	Vadose Zone Soil	MRLPRRPARGGDVHARALERLDVAVDDLEHSSEESDAAQGGPDERTAAVALAAANEQMAAREAWVKYIEHGY*
Ga0150985_1013999252	3300012212	Avena Fatua Rhizosphere	VNAGQLAMTLRHRPRGGEVHARAVDRLEVAVDHRERSSKESDAAVGGPDEQAAVLALAAANERVAAREAWVKYVEHGY*
Ga0137368_108528202	3300012358	Vadose Zone Soil	MTLPHRPTSAEVHARAIERLELAVDDRERSSEQSDAAQGGPHERTAAVALAAANELVAAREAWVKYIEHGY*
Ga0137390_106516842	3300012363	Vadose Zone Soil	VITARLRLNSVRLAMTLPRRPVRGGDVHARAIERLDVAVDDLEHASEESDAAQGRFDKRTVAVALAAANEQVAAREAWVKYIEQGH*
Ga0134024_10947331	3300012404	Grasslands Soil	LDAAVDDLEHLDEESDSARGRPDKRTAAVALAAAHERVAAREAWVKYIEQDY*
Ga0164298_114444111	3300012955	Soil	RAIERLDAAVDDLEHSSEESDAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0164299_114486701	3300012958	Soil	LNTARLAMTLRRRPVRGGDVHARAIERLDVAVDDLQRLSEERDAARGQIDERTAAVELAAANEQLAASEAWVKYIEYGY*
Ga0164302_109225101	3300012961	Soil	MHARAIERLDVAVNDLEHSREESDAAQGGLDERIAAASLAAATEQVAAREAWVKYIEHGH
Ga0164307_102205784	3300012987	Soil	MHARAIERLDVAVNDLEHSREESDAAQGGLDERIAAASLAAATEQVAAREAWVKYIEHG
Ga0157372_130582121	3300013307	Corn Rhizosphere	HRLNTGQLAMTLPRRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0132258_120428573	3300015371	Arabidopsis Rhizosphere	MTLPRRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQGGPNERTAAVALAAANEQVAAREAWVKYIEHGY*
Ga0132258_124026561	3300015371	Arabidopsis Rhizosphere	MTSPRRSTRSGDVHARAIERLDVAVDARERLSEQSEAAQGGPDERTAAVALAAANERVAAREAWVKYIEHGY*
Ga0132256_1009824621	3300015372	Arabidopsis Rhizosphere	MTLPRRPISGGDVHTRAIERLELAIDNRERSSEQSQAAQGGPNERTAAVALAAANELVAARAAWVKYIEHGY*
Ga0132255_1059047182	3300015374	Arabidopsis Rhizosphere	DVHARAIERLELAVDDRERSSEESKAAQGGPDERTAAVALAAANERVAAREAWVKYIEHGY*
Ga0193722_11342541	3300019877	Soil	AARYRLDTVRLAMTLRRRPVMGGDVRTRAIERLHVAVDDLQRLGEESDAAEGRFDERTAAVALAAANEQLAAREAWVKYIEHGH
Ga0222622_104467082	3300022756	Groundwater Sediment	VHARAIARLDAAIEDRERSSKERDAAQGGPDDRTAAIALAAANEQMAAREAWVKYVEHGC
Ga0222622_105251051	3300022756	Groundwater Sediment	VPQAIAARHRLDTVSLAMTLPRRPASGGDVHARAIQRLDLAVDDRERSSEDSDAAQGGPDEPTAAVALAAANEQVAAREAWVKYIEHGY
Ga0207653_101584381	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MTLPRRPISGSDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0207688_109249121	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0207654_103909911	3300025911	Corn Rhizosphere	HTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0207687_104850261	3300025927	Miscanthus Rhizosphere	MTLPRRPISGSDVHTRAIERLELAIDNRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0207691_100690893	3300025940	Miscanthus Rhizosphere	VHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0207651_107567132	3300025960	Switchgrass Rhizosphere	NTGQLAMTLPRRPISGGDVHTRAIERLELAVDDRERSSEQSQAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0209577_100865882	3300026552	Soil	MTLPHRPVRGGDVHARAIERLDVAVDDRERSNEESDAAQGRPDERTAALALAAANEQVAAREAWVKYIEHGY
Ga0208995_10807941	3300027388	Forest Soil	DVHVRAIERLDLAAGDLEHSKEERDAAHGQAEKRAAAVALAAANEQVAVREAWVKYIERA
Ga0208991_10277072	3300027681	Forest Soil	MTLPRRPVRGGDVHVRAIERLDLAAGDLEHSKEERDAAHGQAEKRAAAVALAAANEQVAVREAWVKYIERAG
Ga0209701_104836461	3300027862	Vadose Zone Soil	LPRRPVRGGDVHARAIERLDVAVDDLEHASEESDAAQGRFDKRTVAVALAAANEQVAAREAWVKYIEQGH
Ga0209481_105327431	3300027880	Populus Rhizosphere	MTLPRRPVSGGDVHARAIERLELAVDDRERSSEESKAAQGGPDKRTAAVALAAANEQVAAREAWVKYIERGY
Ga0209590_104411542	3300027882	Vadose Zone Soil	MTLPRRPVRDGDAYARAIERLHAAVDDLERSSEEGDAAHGRRDKRTAAVALAAANEQVAAREAWVKYIEHDH
Ga0209382_101653242	3300027909	Populus Rhizosphere	MTLPRRPVSGGDVHARAIERLELAVDDRERSSEESKAAQGGPDKRTAAVALAAANEQVAAREAWAKYIEHGY
Ga0209382_109064132	3300027909	Populus Rhizosphere	MTLPRRPLRGGEVHARAIERLDVAVDDRERASEQSEAAHGGPDERTAAVALAAANEQAAAREAWVKYIEHGY
Ga0307291_11199791	3300028707	Soil	MTLPRRPTRSGDVHARAIERLDVAVDARERLSEQSEAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0307303_100151152	3300028713	Soil	VHARAIERLDVAVDARERLSEQSEAAQGGPDERTAAVALAAANEQVAAREAWVKYIEHGY
Ga0307303_101188221	3300028713	Soil	MTMPRRPVSGGDVHTRAIERLELAVDDRERSSEQSQAAQRGPDERTAAVALAAANEQLAAREAWVKYIEH
Ga0307297_100430783	3300028754	Soil	LPRRPTSGGDVHARAIERLDLAVDDRERSSEESKAAHGGPDERTAAVALAAANEQVAAREAWVKYIEHRY
Ga0307297_100431922	3300028754	Soil	PLAMTLPRRPVSGGDVHARAIERLELAVDDRERSSEQSQAAQRGPDERTAAVALAAANEQLAAREAWVKYIEHGY
Ga0307297_101282922	3300028754	Soil	VHARAIERLDVAVDARERLSEQSEAAQGGPDERTAAVALAAANEQVAAREAWVKY
Ga0307280_102318391	3300028768	Soil	MTLPRRPVSGGAVHARAIERLELAVDDRERSSEQSKAAQGGPDERTAAVALAAANEQLAAREAWVKYIEHGY
Ga0307290_101555122	3300028791	Soil	GDVHARAIERLDLAVDDRERSSEESKAAHGGPDERTAAVALAAANERVAAREAWVKYIEHGY
Ga0307299_100886551	3300028793	Soil	VHARAIARLDAAIEDRERSSKERDAAQGGPDDRTAAIALAAANEQIAAREAWVKYVEHGC
Ga0307305_101054562	3300028807	Soil	HARAIEQLDLAVDDRERSSEQSEAAQGGPDERTAAVALAAANEQLAAREAWVKYIEHGY
Ga0307294_100396822	3300028810	Soil	VHARAIERLDVAVDARERLSEQSEAAQGGPDERTAAVALAAANERVAAREAWVKYIEHGY
Ga0307292_104911081	3300028811	Soil	ARLRLNTSRLAMTLPRRPVRGSDVHARAIERLDAAYDDRHHSSDERDAAQGGRDERAAAVAFAAANEQVAAREAWVKYIEHGH
Ga0307302_101631622	3300028814	Soil	MTLPHRPRGGEVHARAIDRLELAVDDRERSSKESDAAVGGPDERAAVLALAAANERVAAREAWVKYVEHGY
Ga0307302_104117921	3300028814	Soil	MTLPHRPVRGSDVHARAIARLDAAIEDRERSSKERDAAQGGPDDRTAAIALAAANEQIAA
Ga0307302_104151721	3300028814	Soil	DTVSLAMTLPRRPVSGGDVHARAIERLDLAVDDRERSSEESKAAHGGPDERTAAVALAAANERVAAREAWVKYIEHGY
Ga0307296_105843762	3300028819	Soil	TLPRRPASGGDVHARAIQRLDLAVDDRERSSEDSDAAQGGPDEPTAAVALAANEQVAAREAWVKYIEHGY
Ga0307310_104124481	3300028824	Soil	MTLPRRPVSGGDVHARAIERLELAVDDRERSSEQSQAAQRGPDERTAAVALAAANEQLAAREAWVKYIEHGY
Ga0307312_102958842	3300028828	Soil	MTMPRRPVSGGDVHTRATERLELAVDNRERSSEQSKAAQGGPDERTAAVALAAANEQLAAREAWVKYIEHGY
Ga0307289_100859821	3300028875	Soil	GDVHARAIERLELAVDDRERSSEQSQAAQRGPDERTAAVALAAANEQVAAREAWVKYIEHRY
Ga0307277_101677572	3300028881	Soil	MTLPHRPRGDEVHARAIDRLELAVDDRERSSKESDAAVGGPDERAAVLALAAANERVAAREAWVKYVEHGY
Ga0307277_104505352	3300028881	Soil	MTLPRRPVRGSDVHARAIERLDAAYDDRHHSSDERDAAQGGRDERAAAVAFAAANEQVAAREAWVKYIEHGH
Ga0307308_101971401	3300028884	Soil	VHARAIERLDLAVDDRERSSEESKVAIGGPDERTAAVALAAANEHVAAREAWVKYIEHGY
Ga0307304_105363752	3300028885	Soil	HRLTAVRLATTLPRRPVSGSDVHARAIERLHVAVDARERARAERDAAQGGPDERTAAVALAAANERVAAREAWVKYIEHGY
Ga0308184_10562421	3300031095	Soil	LAMTLPRRPASGGDVHARAIERLDLAVDDRERSSEESKAAHGGPDERTAAVALAAANEQVAAREAWVKYIEHRY
Ga0308179_10479461	3300031424	Soil	MTLPHRPAADGDVHARAIERLDAAVADLDHSSEESDAAEGRFDKRTAAVAMAAANEQVAAREAWVKYIEHGR
Ga0370541_056971_4_219	3300034680	Soil	MTLPHMPRGGEVHARAIDRLEVAVDHRERSSKESDAAVGGPDERAAVLALAAANERVAAREAWVKYVEHGY
Ga0370546_080371_293_511	3300034681	Soil	MTVPHRPVRGGEAHARAIERLEVAVDDRERSSKERDAAHGRPEQRTAAVALAAANEEVAAREAWVKYVEHGY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087620

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences