Metagenome / Metatranscriptome Family F087612

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087612
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	41 residues
Representative Sequence	GGAAEIKIEVEEAALPDSSLLVQANFEGRTATRKFVLRKAE
Number of Associated Samples	98
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (93.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (10.909 % of family members)
Environment Ontology (ENVO)	Unclassified (26.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.70% β-sheet: 23.19% Coil/Unstructured: 68.12%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02597	ThiS	56.36
PF13411	MerR_1	15.45
PF00925	GTP_cyclohydro2	3.64
PF00926	DHBP_synthase	1.82
PF13418	Kelch_4	0.91
PF05935	Arylsulfotrans	0.91
PF04014	MazE_antitoxin	0.91
PF02371	Transposase_20	0.91
PF13854	Kelch_5	0.91
PF07676	PD40	0.91
PF13189	Cytidylate_kin2	0.91
PF14329	DUF4386	0.91
PF00144	Beta-lactamase	0.91
PF09411	PagL	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	56.36
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	56.36
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	3.64
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	1.82
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.91
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.73 %
Unclassified	root	N/A	6.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	35.45 %
Unclassified	root	N/A	6.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.45 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	35.45 %
Unclassified	root	N/A	6.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.73 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	35.45 %
Unclassified	root	N/A	6.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	13.64 %
Unclassified	root	N/A	6.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %
unclassified Acetobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	11.82 %
Unclassified	root	N/A	6.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.73 %
Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105480600	All Organisms → cellular organisms → Bacteria → Acidobacteria	1726	Open in IMG/M
3300001471\|JGI12712J15308_10197470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	528	Open in IMG/M
3300002245\|JGIcombinedJ26739_100160855	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2123	Open in IMG/M
3300003505\|JGIcombinedJ51221_10050574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1578	Open in IMG/M
3300004080\|Ga0062385_11223374	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300004091\|Ga0062387_101695162	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300004092\|Ga0062389_102705011	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300005176\|Ga0066679_10336342	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	986	Open in IMG/M
3300005436\|Ga0070713_100968704	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	820	Open in IMG/M
3300005538\|Ga0070731_10774104	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300005541\|Ga0070733_10136216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1587	Open in IMG/M
3300005591\|Ga0070761_10121538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1516	Open in IMG/M
3300005610\|Ga0070763_10037807	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2242	Open in IMG/M
3300005610\|Ga0070763_10788587	Not Available	561	Open in IMG/M
3300005712\|Ga0070764_10424272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	789	Open in IMG/M
3300006028\|Ga0070717_10348758	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1323	Open in IMG/M
3300006046\|Ga0066652_100211327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1675	Open in IMG/M
3300006046\|Ga0066652_101478733	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300006050\|Ga0075028_100455963	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300006052\|Ga0075029_100788638	Not Available	646	Open in IMG/M
3300006059\|Ga0075017_100041325	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3071	Open in IMG/M
3300006059\|Ga0075017_101074513	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300006059\|Ga0075017_101282135	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300006174\|Ga0075014_100040402	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1949	Open in IMG/M
3300006174\|Ga0075014_100166718	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300006174\|Ga0075014_100919020	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300006903\|Ga0075426_11493518	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300006954\|Ga0079219_11097439	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300009521\|Ga0116222_1092119	All Organisms → cellular organisms → Bacteria → Acidobacteria	1306	Open in IMG/M
3300009522\|Ga0116218_1342082	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300009524\|Ga0116225_1065897	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1714	Open in IMG/M
3300009624\|Ga0116105_1081091	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300009636\|Ga0116112_1225529	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300009638\|Ga0116113_1014604	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1695	Open in IMG/M
3300009665\|Ga0116135_1364544	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300009759\|Ga0116101_1051279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	888	Open in IMG/M
3300009764\|Ga0116134_1341103	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300010043\|Ga0126380_10484775	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300010880\|Ga0126350_10174830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300012202\|Ga0137363_11593717	Not Available	545	Open in IMG/M
3300012683\|Ga0137398_10893982	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300012987\|Ga0164307_10330372	All Organisms → cellular organisms → Bacteria → Acidobacteria	1098	Open in IMG/M
3300013104\|Ga0157370_10976559	All Organisms → cellular organisms → Bacteria → Acidobacteria	767	Open in IMG/M
3300014168\|Ga0181534_10152920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300014969\|Ga0157376_10099475	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2538	Open in IMG/M
3300014969\|Ga0157376_10223409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1746	Open in IMG/M
3300017822\|Ga0187802_10232337	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300017943\|Ga0187819_10829082	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300018002\|Ga0187868_1301031	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300018017\|Ga0187872_10071131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1800	Open in IMG/M
3300018044\|Ga0187890_10168291	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1250	Open in IMG/M
3300018057\|Ga0187858_10763233	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300020579\|Ga0210407_10646866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	822	Open in IMG/M
3300020581\|Ga0210399_10299500	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1342	Open in IMG/M
3300020582\|Ga0210395_10113750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2006	Open in IMG/M
3300021088\|Ga0210404_10870580	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300021181\|Ga0210388_11114545	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300021402\|Ga0210385_10102979	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1994	Open in IMG/M
3300021404\|Ga0210389_10169952	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1695	Open in IMG/M
3300021405\|Ga0210387_11758310	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300021407\|Ga0210383_10241739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1548	Open in IMG/M
3300021478\|Ga0210402_11205761	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300021479\|Ga0210410_10694520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	899	Open in IMG/M
3300021560\|Ga0126371_11254704	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	876	Open in IMG/M
3300022557\|Ga0212123_10828568	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300022732\|Ga0224569_113170	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300023030\|Ga0224561_1020161	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300025459\|Ga0208689_1098399	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300025906\|Ga0207699_11241531	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300026514\|Ga0257168_1014943	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1542	Open in IMG/M
3300026921\|Ga0207860_1020477	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	803	Open in IMG/M
3300027376\|Ga0209004_1079073	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300027567\|Ga0209115_1053052	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	924	Open in IMG/M
3300027568\|Ga0208042_1095124	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300027590\|Ga0209116_1072970	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300027609\|Ga0209221_1019027	All Organisms → cellular organisms → Bacteria → Acidobacteria	1812	Open in IMG/M
3300027676\|Ga0209333_1174960	All Organisms → cellular organisms → Bacteria → Acidobacteria	572	Open in IMG/M
3300027824\|Ga0209040_10251723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → unclassified Acetobacteraceae → Acetobacteraceae bacterium	885	Open in IMG/M
3300027869\|Ga0209579_10183220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1120	Open in IMG/M
3300027879\|Ga0209169_10236093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	958	Open in IMG/M
3300027879\|Ga0209169_10471916	Not Available	659	Open in IMG/M
3300027884\|Ga0209275_10363680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	812	Open in IMG/M
3300027889\|Ga0209380_10108310	Not Available	1609	Open in IMG/M
3300027898\|Ga0209067_10074931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1739	Open in IMG/M
3300028016\|Ga0265354_1006553	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300028036\|Ga0265355_1026643	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300028759\|Ga0302224_10253876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	702	Open in IMG/M
3300028800\|Ga0265338_11058963	Not Available	547	Open in IMG/M
3300029883\|Ga0311327_10663834	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	620	Open in IMG/M
3300029943\|Ga0311340_10192496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2066	Open in IMG/M
3300030054\|Ga0302182_10143959	All Organisms → cellular organisms → Bacteria → Acidobacteria	1033	Open in IMG/M
3300030057\|Ga0302176_10206578	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300030057\|Ga0302176_10483615	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300030524\|Ga0311357_10089637	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3089	Open in IMG/M
3300030524\|Ga0311357_10393286	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1310	Open in IMG/M
3300030815\|Ga0265746_1002333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1849	Open in IMG/M
3300031231\|Ga0170824_103076363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	700	Open in IMG/M
3300031474\|Ga0170818_105144205	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300031474\|Ga0170818_106059575	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300031708\|Ga0310686_103919422	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300031720\|Ga0307469_12066653	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300031754\|Ga0307475_10882686	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300031823\|Ga0307478_10215510	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1549	Open in IMG/M
3300031823\|Ga0307478_10864039	Not Available	757	Open in IMG/M
3300031837\|Ga0302315_10364233	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300031871\|Ga0316036_106509	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300033158\|Ga0335077_10967780	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300033405\|Ga0326727_11240684	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300034130\|Ga0370494_187410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300034195\|Ga0370501_0002637	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4426	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.73%
Host-Associated	Host-Associated	7.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.27%
Aquatic	Environmental → Aquatic	25.45%
Plants	Host-Associated → Plants	7.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.18%
Freshwater	Environmental → Aquatic → Freshwater	16.36%
Peat	Environmental → Terrestrial → Peat	9.09%
Sediment	Environmental → Aquatic → Sediment	8.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.27%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.27%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.18%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.82%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.27%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.27%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.27%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026921	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 28 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031871	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLE2 metaT (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300034130	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1054806001	3300000364	Soil	EVKIDVEEAALPEASLLVQANFEGRTATRKFVLRKTE*
JGI12712J15308_101974701	3300001471	Forest Soil	EIKIAVEAAALQDSSLLVQANFEGRTTTRKFALRKAE*
JGIcombinedJ26739_1001608551	3300002245	Forest Soil	AVTDAAGNAAISVEVDESVLPDSSVMVQANHEGRTVTRKFALRKAE*
JGIcombinedJ51221_100505744	3300003505	Forest Soil	GGAAEIKIEVEEAALPDSSLLVQANFEGRTATRKFVLRKAE*
Ga0062385_112233742	3300004080	Bog Forest Soil	DSAGGASISFDVEESDLPDSSVMVQANHEGRTVTRKFALRKAE*
Ga0062387_1016951622	3300004091	Bog Forest Soil	GGAAEIKIEVEESALPDASLLVQANFEGRTATRKFVLRKAD*
Ga0062389_1027050111	3300004092	Bog Forest Soil	AGAAGISIEVDESALPDSSVLVQATHEGRTATRKFALRKTE*
Ga0066679_103363423	3300005176	Soil	TDAGGAAEIKVEVDEADLPDSSVLVQANYEGRTATRKFLLRRGE*
Ga0070713_1009687041	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DSGGAAEIQIEVAEAELPDLSLLVQANFEGRTATRKFVLRKAE*
Ga0070731_107741041	3300005538	Surface Soil	AVADAGGAAEIKIEVEEASLPDSSLLVQANFEGRTTTRKFVLRKAE*
Ga0070733_101362161	3300005541	Surface Soil	EIKIEAAEAELPDSSLLVQANFSGQTATRKFALRKAE*
Ga0070761_101215381	3300005591	Soil	AISIEVDESALPDSSVMVQANHEGRTVTRKFALRKAE*
Ga0070763_100378075	3300005610	Soil	KIEVEEAELPDASLLVQANFEGRTATRKFALKKAE*
Ga0070763_107885871	3300005610	Soil	TQAVTDSAGAAQISVEVEESALVEASVMVQANHEGRTVTRKFALRKAE*
Ga0070764_104242723	3300005712	Soil	AEIKIEAAEAELPDSSLLVQANFSGQTATRKFALRKAE*
Ga0070717_103487584	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DIELDETALPDSSLLVQANYEGRTATRKFALRKAE*
Ga0066652_1002113272	3300006046	Soil	KIEADESLLPDSSVLVQAHYEGRTATRKFQLRKLEQ*
Ga0066652_1014787332	3300006046	Soil	KIEAEETDLPDSSLLVQANFEGRTATRKFALRKAE*
Ga0075028_1004559631	3300006050	Watersheds	ADAGGSAEVKIEVEETALPDSSLLVQASFEGRTATRKFVLRKAE*
Ga0075029_1007886381	3300006052	Watersheds	AVADSGGGAEIKIEVAEADLPDSTLLVQINQEGRTATRKFVLRKAE*
Ga0075017_1000413251	3300006059	Watersheds	KIEVEESALPDSSLLVQANFEGRTATRKFVLRKAE*
Ga0075017_1010745131	3300006059	Watersheds	YTQTSTDPGGAAEINFEIDDSSLPDASILVQASFEGRTATRKFLLRQVVS*
Ga0075017_1012821353	3300006059	Watersheds	NALMSVQVEEASLRDSSVLVQANVSGRTATRKFEIRSAP*
Ga0075014_1000404026	3300006174	Watersheds	TQAVADSGGSAEIKIEVEEAALPDSSLLVQANFEGRTATRKFVLRKAE*
Ga0075014_1001667181	3300006174	Watersheds	GGSAEINIEVEESALPDSSLLVQANFEGRTTTRKFMLRKGE*
Ga0075014_1009190201	3300006174	Watersheds	ADSGGAAEIKIEVEESALPDSSLLVQANFEGRTATRKFVLRKAE*
Ga0075426_114935182	3300006903	Populus Rhizosphere	IEVEEAALPDSSLLVQANFEGRTATRKFMLRKTQ*
Ga0079219_110974391	3300006954	Agricultural Soil	DSGGSAEIKIEVEESAMPDSSLLVQANYEGRTATRKFALRKAE*
Ga0116222_10921191	3300009521	Peatlands Soil	AEIKIEVQESTLPDSSLMVQASYEGRTATRKFLLRKGE*
Ga0116218_13420821	3300009522	Peatlands Soil	SGGAAEIKIEVEEASLPDSSLLVQANYGGRTATRKFTLRRAE*
Ga0116225_10658971	3300009524	Peatlands Soil	IKIEVEETALPDASLLVQANFEGRTATRKFLLRKAD*
Ga0116105_10810913	3300009624	Peatland	IEVEESALPDSSVMVQANHEGRTVTRKFALRKAE*
Ga0116112_12255292	3300009636	Peatland	AVADSGGSAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRRAE*
Ga0116113_10146045	3300009638	Peatland	DSGGAAEVKIEVEEAELPDASLLVQANFEGRTATRKFALRKAE*
Ga0116135_13645442	3300009665	Peatland	AGSAEISVEVEESALPDSSIMVQANHQGRTVTRKFALRKAD*
Ga0116101_10512791	3300009759	Peatland	EVKIEVEEAELPDASLLVQANFEGRTATRKFALRKAE*
Ga0116134_13411032	3300009764	Peatland	AGSAEISVEVDESALPDSSVMVQANHEGRTVTRKFVLRKSE*
Ga0126380_104847751	3300010043	Tropical Forest Soil	AEIKIEVEEAQLPDSSLLVQANFEGRTATRKFVLRKTE*
Ga0126350_101748301	3300010880	Boreal Forest Soil	ISIELEESALPDSSVLVQATHEGRTVTRKFALRKT*
Ga0137363_115937171	3300012202	Vadose Zone Soil	QAVTDSAGAAAISVEVEESALPDSSVMVQANHEGRTVTRKFALRKAE*
Ga0137398_108939821	3300012683	Vadose Zone Soil	ISVEVDESALPDSSVMVQANHEGRTVTRKFALRKTE*
Ga0164307_103303721	3300012987	Soil	ESGLPDASLLVQANFEGRTTTRKFVLRKADQPQV*
Ga0157370_109765592	3300013104	Corn Rhizosphere	SGGAAEIKIEVEESGLPDASLLVQANFEGRTTTRKFVLRKADQPQV*
Ga0181534_101529201	3300014168	Bog	AAEIKIEAEEADLPDSTLLVQVNCEGRTATRKFVLRKAE*
Ga0157376_100994755	3300014969	Miscanthus Rhizosphere	GAAEIKIEAEENDLPDSSLLVQANFEGRTATRKFALRKAD*
Ga0157376_102234095	3300014969	Miscanthus Rhizosphere	IEADESALPDSSVLVQASYSGRTATRKFNLRKVEA*
Ga0187802_102323371	3300017822	Freshwater Sediment	TQAVTDSSGSASISVEVDESALPDSSVMVQANHEGRTVTRKFVLRKAD
Ga0187819_108290822	3300017943	Freshwater Sediment	ADSGGAAEIKIEVAEADLPDSTLLVQINQEGRTATRKFVLRKAE
Ga0187868_13010313	3300018002	Peatland	ADSGGSAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRRAE
Ga0187872_100711311	3300018017	Peatland	AEIKIEVEEAALPDSSLLVQANYQGRTATRKFALRKAE
Ga0187890_101682911	3300018044	Peatland	SAEISVEVDESALPDSSVMVQANHEGRTVTRKFVLRKSE
Ga0187858_107632332	3300018057	Peatland	VADSGGSAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRRAE
Ga0210407_106468663	3300020579	Soil	DSAGGAQISIEVEESALTEASVMVQANHQGRTVTRKFALRKAE
Ga0210399_102995004	3300020581	Soil	TNSEGAAEIKIAVEAAALQDSSLLVQANFEGRTTTRKFALRKAE
Ga0210395_101137501	3300020582	Soil	DSGGAAEIHIEVEESALPDASLMVQANHEGRTATRKFELRKAD
Ga0210404_108705801	3300021088	Soil	DSAGSAQISIEVEESALTEASVMVQANHQGRTVTRKFALRKAE
Ga0210388_111145452	3300021181	Soil	SFEVEESALPDSSIIIQANHQGRTVTRKFLLRKTE
Ga0210385_101029791	3300021402	Soil	DSGGAAEIKIEVEESALPDSSLLVQANYDGRTATRKFILRKAD
Ga0210389_101699521	3300021404	Soil	QFKSEVEEAQLPDSSLLVQANFEGRTATRKFELRQA
Ga0210387_117583102	3300021405	Soil	VPDPGGAAEIKIEVEEAALPDASLMVQANHEGRTATRKFQLRKSG
Ga0210383_102417394	3300021407	Soil	QALADSAGAAEIKIEAAEAELPDSSLLVQANFSGQTATRKFALRKAE
Ga0210402_112057612	3300021478	Soil	DSGGAAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRKAD
Ga0210410_106945201	3300021479	Soil	TDAGGGAEIKVEMDESALPDAAVLVQANYEGRTSTRKFVLRKAE
Ga0126371_112547043	3300021560	Tropical Forest Soil	DSGGAAEIQIEAEEASLPDASLLVQANFEGRTATRKFVLRKAE
Ga0212123_108285682	3300022557	Iron-Sulfur Acid Spring	AEIKLEVEEAALADSSLLVQANYQGRTATRKFALERAE
Ga0224569_1131703	3300022732	Rhizosphere	AAEIKIEVEEAALPDASLMVQANHEGRTATRKFQLRKSE
Ga0224561_10201612	3300023030	Soil	GSAQINVEVEESALEEASVMVQANHEGRTVTRKFALRKAE
Ga0208689_10983991	3300025459	Peatland	AVADSGGSAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRRAE
Ga0207699_112415311	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	IKIEVEEAALPDSSLLVQANFEGRTATRKFILRKAE
Ga0257168_10149435	3300026514	Soil	TMTDAGGGAEIKIEADESLLPDSSVLVQANYEGRTATRKFQLRKLEQ
Ga0207860_10204773	3300026921	Tropical Forest Soil	AEVKIEVAEAELPDSSLIVQANFEGRTTTRKFALRKAE
Ga0209004_10790731	3300027376	Forest Soil	QAVTDAAGTAQISVEVDESALPDSSVMVQANHEGRTVTRKFALRKAE
Ga0209115_10530523	3300027567	Forest Soil	EISIEVDESALPDSSVIVQANHDGRTVTRKFVLRKSE
Ga0208042_10951241	3300027568	Peatlands Soil	FYTQAVTDSAGGASISFEVEEYDLPDSSVMVQANHEGRTVTRKFALRKAE
Ga0209116_10729703	3300027590	Forest Soil	TDSGGNAQISIEVEETALADASVMVQANHEGRTVTRKFALRKAE
Ga0209221_10190271	3300027609	Forest Soil	SAEICVEVDESALPDASVMVQANHEGRTVTRKFALRKAD
Ga0209333_11749601	3300027676	Forest Soil	AEIKIEAEEADLPDSSLLVQANYCGHTATRKFALRKAE
Ga0209040_102517231	3300027824	Bog Forest Soil	ADSGGSAEINIEVEESALPDSSLLVQANFEGRTATRKFMLRKGE
Ga0209579_101832201	3300027869	Surface Soil	GAAEIKIEVEEAALPDSSLLVQANFEGRTATKKFVLRKAE
Ga0209169_102360931	3300027879	Soil	NAQISIEVEETVLADASVMVQANHQGRTVTRKFALRKAE
Ga0209169_104719161	3300027879	Soil	GSTEISVEVEESALPDSSIMVQANHEGRTVTRKFALRKSD
Ga0209275_103636803	3300027884	Soil	SAGGAQISIEVEESALTEASVMVQANHQGRTVTRKFALRKAE
Ga0209380_101083102	3300027889	Soil	AISIEVDESALPDSSVMVQANHEGRTVTRKFALRKAE
Ga0209067_100749316	3300027898	Watersheds	QAVADSGGSAEIKIEVEEAALPDSSLLVQANFEGRTATRKFVLRKAE
Ga0265354_10065531	3300028016	Rhizosphere	SVEVEESTLADSSVMVQANHEGRTVTRKFALRKAE
Ga0265355_10266431	3300028036	Rhizosphere	NAAISIEVDESSLPDSSVMVQANHEGRTVTRKFALRKSE
Ga0302224_102538761	3300028759	Palsa	LTDATGIAQISLELDESSLPDSSVLVQAIHEGRTVTRKFLLRQAD
Ga0265338_110589632	3300028800	Rhizosphere	AEIKIEVEEAELPDSTLLVQINQEGRTATRKFVLRKAD
Ga0311327_106638343	3300029883	Bog	AIKVEVEESSLSDASVMVQANHEGRTVTRKFALRKAE
Ga0311340_101924961	3300029943	Palsa	KISIEVEESSLSDSSVLVQANYEGRTVTRKFALREAE
Ga0302182_101439591	3300030054	Palsa	DAAGAAKISIEVEESALPDSSVLVQATHEGRTVTRKFALRKAE
Ga0302176_102065781	3300030057	Palsa	TQAVSDAAGAAKISIEVEESALPDSSVLVQATHEGRTVTRKFALRKAE
Ga0302176_104836152	3300030057	Palsa	IKLEVEESILPDSSLMVQASYEGRTATRKFLLRKSE
Ga0311357_100896376	3300030524	Palsa	AVADSGGAAEVKIEVEEAQLPDASLLVQANFEGRTATRKFALRKAE
Ga0311357_103932864	3300030524	Palsa	AGSAQIQIAVEESALPDSSVMVQANHDGRTATRKFLLRKAE
Ga0265746_10023331	3300030815	Soil	AVTDSGGAAEIKIEVEESALPDASLMVQANHEGRTATRKFQLRKAE
Ga0170824_1030763631	3300031231	Forest Soil	AEIKIEVEEANLPDSSLLVQANYGGRTATRKFALRKAE
Ga0170818_1051442053	3300031474	Forest Soil	QAVADSGGAAEIQIEVAEEELPDLSLLVQANFEGRTATRKFVLRKAE
Ga0170818_1060595752	3300031474	Forest Soil	QAVADNGGAAEIKIEVAEAELPDLSLLVQANFEGRTATRKFVLRKAE
Ga0310686_1039194222	3300031708	Soil	AAEIKIEVEENHLSDSSLLVQANFEGRTATRKFELRKTE
Ga0307469_120666531	3300031720	Hardwood Forest Soil	DAAGNAEISVEVEESALPDSSVMVQANHEGRTVTRKFALRKA
Ga0307475_108826863	3300031754	Hardwood Forest Soil	AGAAEISIELEESALPDSSVLVQATHEGRTVTRKFALRKAE
Ga0307478_102155101	3300031823	Hardwood Forest Soil	STGSASISVEVDESALPDSSVMVQANHEGRTVTRKFVLRKAD
Ga0307478_108640391	3300031823	Hardwood Forest Soil	TISIEVEESTLPDSSVMVQANHEGRTVTRKFALRKAE
Ga0302315_103642332	3300031837	Palsa	DSAGSAEISIEVEESALPDSSVLVQANHEGRTATRKFALRKAE
Ga0316036_1065092	3300031871	Soil	GAAGISIEVDESALPDSSVLVQATHEGRTATRKFALRKAE
Ga0335077_109677802	3300033158	Soil	TQTVADSGGSAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRKAE
Ga0326727_112406841	3300033405	Peat Soil	SAEIKIEVEEAALPDASLLVQANFEGRTATRKFVLRRAE
Ga0370494_187410_402_533	3300034130	Untreated Peat Soil	DSGGGAEIKIDVEEADLPDASLLVQANFEGRTATRKFVLRKAE
Ga0370501_0002637_4287_4424	3300034195	Untreated Peat Soil	VADSGGGAEIKIDVEEADLPDASLLVQANFEGRTATRKFVLRKAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087612

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences