NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087594

Metagenome Family F087594

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087594
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 41 residues
Representative Sequence ILGLLAIAVTVLVFGWSENREREISASEMARLERARLGLGRPA
Number of Associated Samples 94
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.83 %
% of genes near scaffold ends (potentially truncated) 95.45 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (57.273 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(36.364 % of family members)
Environment Ontology (ENVO) Unclassified
(52.727 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.273 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 53.52%    β-sheet: 0.00%    Coil/Unstructured: 46.48%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF00510COX3 58.18
PF03626COX4_pro 16.36
PF01774UreD 1.82
PF14525AraC_binding_2 0.91
PF00196GerE 0.91
PF00091Tubulin 0.91
PF02894GFO_IDH_MocA_C 0.91
PF00115COX1 0.91
PF02518HATPase_c 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG1845Heme/copper-type cytochrome/quinol oxidase, subunit 3Energy production and conversion [C] 58.18
COG3125Heme/copper-type cytochrome/quinol oxidase, subunit 4Energy production and conversion [C] 16.36
COG0829Urease accessory protein UreHPosttranslational modification, protein turnover, chaperones [O] 1.82
COG0673Predicted dehydrogenaseGeneral function prediction only [R] 0.91


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms57.27 %
UnclassifiedrootN/A42.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004092|Ga0062389_102027501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales752Open in IMG/M
3300004633|Ga0066395_10809836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria563Open in IMG/M
3300005176|Ga0066679_10151806All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1451Open in IMG/M
3300005332|Ga0066388_100791535All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1542Open in IMG/M
3300005713|Ga0066905_100351633All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1178Open in IMG/M
3300005764|Ga0066903_105380882Not Available676Open in IMG/M
3300005844|Ga0068862_100006040All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria10084Open in IMG/M
3300006032|Ga0066696_10586820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria725Open in IMG/M
3300006174|Ga0075014_100858723All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria540Open in IMG/M
3300006800|Ga0066660_11167967All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria606Open in IMG/M
3300010358|Ga0126370_10119092All Organisms → cellular organisms → Bacteria → Proteobacteria1867Open in IMG/M
3300010360|Ga0126372_11794125Not Available657Open in IMG/M
3300010361|Ga0126378_13285623Not Available514Open in IMG/M
3300010376|Ga0126381_103608570Not Available607Open in IMG/M
3300010398|Ga0126383_10031624All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4208Open in IMG/M
3300011269|Ga0137392_10770923Not Available795Open in IMG/M
3300011270|Ga0137391_10860262Not Available744Open in IMG/M
3300012096|Ga0137389_10879233Not Available769Open in IMG/M
3300012202|Ga0137363_10147082All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1847Open in IMG/M
3300012211|Ga0137377_11542808All Organisms → cellular organisms → Bacteria → Proteobacteria589Open in IMG/M
3300012212|Ga0150985_104808696All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1007Open in IMG/M
3300012683|Ga0137398_10903865Not Available615Open in IMG/M
3300012918|Ga0137396_11150510All Organisms → cellular organisms → Bacteria → Proteobacteria551Open in IMG/M
3300012929|Ga0137404_11762826All Organisms → cellular organisms → Bacteria → Proteobacteria575Open in IMG/M
3300012960|Ga0164301_10808591Not Available718Open in IMG/M
3300012961|Ga0164302_11255109Not Available596Open in IMG/M
3300012971|Ga0126369_11308288Not Available815Open in IMG/M
3300012971|Ga0126369_11591155Not Available743Open in IMG/M
3300012987|Ga0164307_11584815Not Available554Open in IMG/M
3300013306|Ga0163162_12580830All Organisms → cellular organisms → Bacteria → Proteobacteria585Open in IMG/M
3300016270|Ga0182036_10844861Not Available748Open in IMG/M
3300016294|Ga0182041_12077894All Organisms → cellular organisms → Bacteria → Proteobacteria530Open in IMG/M
3300016294|Ga0182041_12287532All Organisms → cellular organisms → Bacteria → Proteobacteria506Open in IMG/M
3300016319|Ga0182033_10306192All Organisms → cellular organisms → Bacteria → Proteobacteria1313Open in IMG/M
3300016319|Ga0182033_11038792Not Available730Open in IMG/M
3300016341|Ga0182035_10681951Not Available894Open in IMG/M
3300016357|Ga0182032_10846046Not Available775Open in IMG/M
3300016371|Ga0182034_10208072All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1518Open in IMG/M
3300016422|Ga0182039_10664883Not Available916Open in IMG/M
3300016445|Ga0182038_10052337All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2734Open in IMG/M
3300016445|Ga0182038_10099501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2109Open in IMG/M
3300016445|Ga0182038_10636895All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria923Open in IMG/M
3300017959|Ga0187779_10914289Not Available605Open in IMG/M
3300017974|Ga0187777_10525424Not Available829Open in IMG/M
3300018468|Ga0066662_10839362Not Available896Open in IMG/M
3300020034|Ga0193753_10399100All Organisms → cellular organisms → Bacteria → Proteobacteria551Open in IMG/M
3300021401|Ga0210393_10103718All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2266Open in IMG/M
3300021401|Ga0210393_10468947All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1028Open in IMG/M
3300021406|Ga0210386_11055576Not Available691Open in IMG/M
3300021433|Ga0210391_11468916All Organisms → cellular organisms → Bacteria → Proteobacteria523Open in IMG/M
3300025910|Ga0207684_10635077Not Available910Open in IMG/M
3300025929|Ga0207664_11533344Not Available588Open in IMG/M
3300026527|Ga0209059_1172182Not Available761Open in IMG/M
3300027512|Ga0209179_1021227All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1266Open in IMG/M
3300027846|Ga0209180_10267105All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria983Open in IMG/M
3300027874|Ga0209465_10097222All Organisms → cellular organisms → Bacteria → Proteobacteria1442Open in IMG/M
3300028747|Ga0302219_10282555Not Available645Open in IMG/M
3300028906|Ga0308309_10229461All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1543Open in IMG/M
3300030524|Ga0311357_11011026All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria731Open in IMG/M
3300031525|Ga0302326_12077540Not Available731Open in IMG/M
3300031543|Ga0318516_10095578All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1674Open in IMG/M
3300031546|Ga0318538_10014446All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3377Open in IMG/M
3300031564|Ga0318573_10548401All Organisms → cellular organisms → Bacteria → Proteobacteria623Open in IMG/M
3300031573|Ga0310915_10191661All Organisms → cellular organisms → Bacteria → Proteobacteria1427Open in IMG/M
3300031681|Ga0318572_10105733All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1593Open in IMG/M
3300031713|Ga0318496_10174979All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1176Open in IMG/M
3300031719|Ga0306917_10807991Not Available735Open in IMG/M
3300031723|Ga0318493_10144028All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1229Open in IMG/M
3300031744|Ga0306918_11405329Not Available535Open in IMG/M
3300031754|Ga0307475_10391952All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1116Open in IMG/M
3300031763|Ga0318537_10150608Not Available866Open in IMG/M
3300031764|Ga0318535_10437770Not Available582Open in IMG/M
3300031765|Ga0318554_10064860All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2018Open in IMG/M
3300031768|Ga0318509_10391148Not Available778Open in IMG/M
3300031770|Ga0318521_10373972Not Available847Open in IMG/M
3300031770|Ga0318521_10556034Not Available692Open in IMG/M
3300031795|Ga0318557_10039159All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1955Open in IMG/M
3300031795|Ga0318557_10130115All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1130Open in IMG/M
3300031805|Ga0318497_10212295All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1070Open in IMG/M
3300031819|Ga0318568_10522519Not Available740Open in IMG/M
3300031821|Ga0318567_10151065All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1284Open in IMG/M
3300031833|Ga0310917_10061972All Organisms → cellular organisms → Bacteria → Proteobacteria2325Open in IMG/M
3300031833|Ga0310917_10527329Not Available803Open in IMG/M
3300031859|Ga0318527_10514418All Organisms → cellular organisms → Bacteria → Proteobacteria511Open in IMG/M
3300031890|Ga0306925_11933668All Organisms → cellular organisms → Bacteria → Proteobacteria559Open in IMG/M
3300031896|Ga0318551_10209915All Organisms → cellular organisms → Bacteria → Proteobacteria1079Open in IMG/M
3300031910|Ga0306923_11412570Not Available732Open in IMG/M
3300031912|Ga0306921_10568671All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1313Open in IMG/M
3300031946|Ga0310910_10982399Not Available660Open in IMG/M
3300031946|Ga0310910_11449910All Organisms → cellular organisms → Bacteria → Proteobacteria527Open in IMG/M
3300031947|Ga0310909_10354061All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1232Open in IMG/M
3300031947|Ga0310909_10409952All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1138Open in IMG/M
3300031954|Ga0306926_10403846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1686Open in IMG/M
3300032001|Ga0306922_11004951Not Available860Open in IMG/M
3300032001|Ga0306922_12151013All Organisms → cellular organisms → Bacteria → Proteobacteria539Open in IMG/M
3300032035|Ga0310911_10255549All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1004Open in IMG/M
3300032035|Ga0310911_10452935Not Available743Open in IMG/M
3300032035|Ga0310911_10933507All Organisms → cellular organisms → Bacteria → Proteobacteria500Open in IMG/M
3300032039|Ga0318559_10213035Not Available890Open in IMG/M
3300032051|Ga0318532_10067229All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1245Open in IMG/M
3300032051|Ga0318532_10372133All Organisms → cellular organisms → Bacteria → Proteobacteria507Open in IMG/M
3300032060|Ga0318505_10479810All Organisms → cellular organisms → Bacteria → Proteobacteria587Open in IMG/M
3300032076|Ga0306924_11396866Not Available747Open in IMG/M
3300032094|Ga0318540_10300701Not Available774Open in IMG/M
3300032261|Ga0306920_100127914All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales3779Open in IMG/M
3300032895|Ga0335074_11284447Not Available607Open in IMG/M
3300033134|Ga0335073_10693384Not Available1115Open in IMG/M
3300033289|Ga0310914_10149986All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2056Open in IMG/M
3300033289|Ga0310914_11060513Not Available711Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil36.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.09%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.36%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.64%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.73%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.82%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.82%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.91%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.91%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.91%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.91%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.91%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.91%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.91%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.91%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020034Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2EnvironmentalOpen in IMG/M
3300021361Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2Host-AssociatedOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300027512Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300028747Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031764Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062389_10202750113300004092Bog Forest SoilLGLVAAVITSVVFGWSENREQDIPAAEIALMERARLDAGRTA*
Ga0066395_1080983623300004633Tropical Forest SoilILGLLAIAVTVLVFGWSENREREISASEMARLERARLGLGRPA*
Ga0066679_1015180613300005176SoilGLLAAAITVLVFGWSENREHEIPAAEIARMERARLGLGRVA*
Ga0066388_10079153533300005332Tropical Forest SoilVILGLLAIAITILVFGWSENREREIPASEMARIEQVRLGLRRPA*
Ga0066905_10035163313300005713Tropical Forest SoilIWWIVIVGLLAAATTILVFGWSDDREREISATEVARMERTQVGLGGAR*
Ga0066903_10538088213300005764Tropical Forest SoilILVTVLVFGWSENRQHEISTNEIARMERVRFGFGQPA*
Ga0068862_10000604013300005844Switchgrass RhizosphereAAATMLAFGWSDDREHEIPAAELARAERTRMGLGGAA*
Ga0066696_1058682023300006032SoilGVLVFGWSENREREIPAAEIARMERARLGLGRPA*
Ga0075014_10085872323300006174WatershedsVILGFLAAAVTLLSAGWSDEREHEIPATEIAKLERARSGLRQPA*
Ga0066660_1116796713300006800SoilWWIVILGLLAAAITVLVFGWSENREREIPVPEIARTERARLGVGGIA*
Ga0126370_1011909233300010358Tropical Forest SoilVILGLLAIAITILVFGWSEDREREIPASEMARIEQVRLGLRRPA*
Ga0126372_1179412523300010360Tropical Forest SoilTVLVFGWSENREHEISANEMAQLERARLGLGRPA*
Ga0126378_1328562313300010361Tropical Forest SoilLVVLGLLAILVAVLVFGWSENRQREIPADEMARIERARLGVGRPA*
Ga0126381_10360857023300010376Tropical Forest SoilLAVLGLLAILVTVLVFGWSENRQREISANEMARMERARLGLGWPA*
Ga0126383_1003162413300010398Tropical Forest SoilILGLLAILGMVMVFGWSEDREHEISAAEMARMERARLARGRPA*
Ga0137392_1077092323300011269Vadose Zone SoilAAITVLVFGWSENREREISVAEIARTERARLGLGRTA*
Ga0137391_1086026213300011270Vadose Zone SoilLGLLAAAITVLVAGWRDDREHEISATELAQMERARLGLGRPA*
Ga0137389_1087923313300012096Vadose Zone SoilLLAAAITVLVFGWSENREREIPVAEIARTERARLGLGRIA*
Ga0137363_1014708243300012202Vadose Zone SoilVVTVLVFGWSENREREIPVAEIARTERARLGLGRIA*
Ga0137377_1154280813300012211Vadose Zone SoilIWWIVILGLLAAAVTVLLSGWSDTREHEISATELARMEQARLGLGRPA*
Ga0150985_10480869633300012212Avena Fatua RhizosphereAILGLLAILVTVLVFGWSENREREIPANEIARMERARLGLGRPA*
Ga0137398_1090386523300012683Vadose Zone SoilWIVILGLLAAVVTVMVFGWSENREREISVAEIARTERTRLGPGRVA*
Ga0137396_1115051013300012918Vadose Zone SoilTFLVFGWSENREREISATELARLERARLGLGRPV*
Ga0137404_1176282613300012929Vadose Zone SoilALGLAGAAITLLAFGWNEERETAIPASEIARMERARSGLRGVA*
Ga0164301_1080859123300012960SoilGLLGAAATMLAFGWSDDREHEIPAAELARAERTRMGLGGAA*
Ga0164302_1125510923300012961SoilLSLLAILVTFMVFGWSENREREIPANEIARMERARPGLGRPA*
Ga0126369_1130828823300012971Tropical Forest SoilLLAIAITILVFGWSENREREIPASEMARMERARLGLGRPA*
Ga0126369_1159115513300012971Tropical Forest SoilLGLLAILIIVLVFGWSENRQHEITAREMAQLERARVGLGRSA*
Ga0164307_1158481513300012987SoilAIVGLLAAAATMLAFGWSDDREHEIPAAELARAERTRARLGGAA*
Ga0163162_1258083013300013306Switchgrass RhizosphereIAILGLLAILITVLVFGWSENREREIPANEMARMERARLRPGRSA*
Ga0182036_1084486113300016270SoilLLAIAVGILVFGWSENREREISASEIARLERARLGLGRPA
Ga0182041_1207789413300016294SoilLAAAVTVLVFGWSENREHEISANEMARIEQARLGLGRPA
Ga0182041_1228753223300016294SoilITVLVFGWSESRQHEISANEMAQLERVRLGLGRPA
Ga0182033_1030619243300016319SoilIGLLAIAVGILVFGWSENREREISAGEIGRMEQARLGLGRPA
Ga0182033_1103879223300016319SoilLGLLAIAVTVLVFGWSENREHEISANEMAQLERARLGLGRPA
Ga0182035_1068195133300016341SoilAVTVLVFGWSENREHEISANEMARIEQARLGLGRPA
Ga0182032_1084604613300016357SoilVAVLVFGWSKNREREIPVTEMARMERARLGLGRPA
Ga0182034_1020807243300016371SoilVGLLAILLIVLVFGWSENRQHEITAGEMAQLERARLGLGRSA
Ga0182039_1066488333300016422SoilLVLVGLLAIAVTIMVFGWSEDREREIPAREIAQLERARLAWGRPA
Ga0182038_1005233713300016445SoilVTMLVFGWSENREREIPAAEIARVERARLGFGRPA
Ga0182038_1009950113300016445SoilIWWIVIIGLLAIAVGILVFGWSENREREISAGEIARLERARLALGSPA
Ga0182038_1063689513300016445SoilAILIIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA
Ga0187779_1091428923300017959Tropical PeatlandVVILGLLAAAVTIMAFGWSENREREITVSEIAGVEQARMGVRGRA
Ga0187777_1052542413300017974Tropical PeatlandVGILVFGWSENRERAISASEIARLERARLALGRPA
Ga0066662_1083936223300018468Grasslands SoilLLAAAVTVLVSGWSDEREHEIPAAQIAQMERARLGLGRPA
Ga0193753_1039910013300020034SoilAVILGLLAMLVTVLVFGWSENREREVSSGEIARIEQARLGLRSAA
Ga0213872_1026107413300021361RhizosphereGFLAAAIIVLIAGWGDEREHEIPAADIARLERARLRA
Ga0210393_1010371843300021401SoilLAILGLLAVAVTMLVFGWSENREREIPAAEIARAERARLGFGRPA
Ga0210393_1046894713300021401SoilIAVTVMVFGWSENREREISANEMARMERARLGLGRPA
Ga0210386_1105557623300021406SoilILALLAIAVTVMVFGWSENREREIPANEMARMERVRLGLGRPA
Ga0210391_1146891623300021433SoilAVTVMVFGWSENREREIPANEMARMERVRLGLGRPA
Ga0207684_1063507733300025910Corn, Switchgrass And Miscanthus RhizosphereMAGLLGAAATMLAFGWSDDREHEIPAAELARAERTRMGLGGAA
Ga0207664_1153334413300025929Agricultural SoilIAVIVLVFGWSENREREIPAAEIARMERTRLGFGRPA
Ga0209059_117218213300026527SoilVGVLVFGWSENREREIPANEIARMERARLGFGRPA
Ga0209179_102122713300027512Vadose Zone SoilGLLAVAVTFLVFGWSENREREISATELARLERARLGLGRPV
Ga0209180_1026710513300027846Vadose Zone SoilLAAAITVLVFGWSENREREISVAEIARTERARLGLGRTA
Ga0209465_1009722243300027874Tropical Forest SoilIIGLLAIAVGILVFGWSENREREISANEIARLERTRLALGRPA
Ga0302219_1028255523300028747PalsaAAVIVAMVFGWSEKREEEIPAAEIARLERARLALGPTA
Ga0308309_1022946113300028906SoilILGLLAAAVTMLVFGWSENREREIPANEIARMERARLGLGRPA
Ga0311357_1101102613300030524PalsaIWWMAILGLLAAVIVAMVFGWSEKREEEIPAAEIARLERARLALGPTA
Ga0302326_1207754023300031525PalsaVGLLAILVTFLVFGWSENREREIPAGEMARIERARSGLGSAA
Ga0318516_1009557843300031543SoilIWWIVILGLLAAAVTVLVFGWSENRQHEISANEMARIEQARLGLGRPA
Ga0318538_1001444653300031546SoilLAILLIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA
Ga0318573_1054840123300031564SoilLGLLAVAVTMLVFGWSENREREIPAAEIARVERARLGFGRPA
Ga0310915_1019166143300031573SoilVIIGLLAIAVGILVFGWSENREREISASEIARLERARLGLGRPA
Ga0318572_1010573343300031681SoilLGLLAAAVTVLVFGWSENRQHEISANEMAQLERARLGLGRPA
Ga0318496_1017497913300031713SoilAIAVGILVFGWSENREREISAGEIERMEQARLGLGRPA
Ga0306917_1080799123300031719SoilGLLAIAVGILVFGWSENREREISAGEIARLERARLALGSPA
Ga0318493_1014402833300031723SoilLLAAAVTVLVFGWSENRQHEISANEMARIEQARLGLGRPA
Ga0306918_1140532913300031744SoilAVAVTVLVFGWSENREQEISANEMELLERARLGLGRPA
Ga0307475_1039195233300031754Hardwood Forest SoilLGLLAAAVTMLVFGWSENREREIPANEIARMERARLGLGRPA
Ga0318537_1015060833300031763SoilWWIVILGLLAAAVTVLVFGWSENRQHEISANEMARIEQARLGLGRPA
Ga0318535_1043777013300031764SoilVILGLLAAAVTVLAFGWSIDREREISAAEIAQMERARLGLRQPAE
Ga0318554_1006486013300031765SoilIWWIVILGLLAAAVTVLVFGWSENRQHEISANEMAQLERARLGLGRPA
Ga0318509_1039114813300031768SoilWWIVIIGLLAIAVGILVFGWSENREHEISAGEIAHLERARLGLGRPA
Ga0318521_1037397213300031770SoilVAVTMLVFGWSENREREIPAAEIARVERARLGFGRPA
Ga0318521_1055603423300031770SoilLGLLAAAVTVLVFGWSENREQEISANEMARIEEARLGLGRPA
Ga0318557_1003915913300031795SoilWWIAILGLLAIAITILVFGWSEDREREIPASQIARMERARLGLGRPA
Ga0318557_1013011513300031795SoilHIWWIVIIGLLVIAVGILVFGWSENREREISAGEIERMEQARLGLGRPA
Ga0318497_1021229513300031805SoilIWWIVIIGLLAIAVGILVFGWSENREREISASEIARLERARLGLGRPA
Ga0318568_1052251923300031819SoilAVGILAFGWSENREREVPASEIARRERARLGLGRPA
Ga0318567_1015106533300031821SoilIAITILVFGWSEDREREIPASQIARMERARLGLGRPA
Ga0310917_1006197213300031833SoilVGLLAILFIVLVFGWSENREHEITATEMARLERARLGLGRPA
Ga0310917_1052732913300031833SoilLLAAAVTVLVFGWSENREQEISANEMARIEEARLGLGRPA
Ga0318527_1051441813300031859SoilAVGILVFGWSENREREIPASEIARLERARLALGRPA
Ga0306925_1193366813300031890SoilVIIGLLVIAVGILVFGWSENREREIPASEIARLERARLALGRPA
Ga0318551_1020991533300031896SoilLLAAAVTVLVFGWSENRQHEISANEMAQLERARLGLGRPA
Ga0306923_1141257023300031910SoilLLAILLIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA
Ga0306921_1056867113300031912SoilLAIAVGILVFGWSENREHEISAGELAHLERARLGLGRPA
Ga0310910_1098239923300031946SoilIIGLLAIAVGILVFGWSENREREISASEIARLERARLGLGRPA
Ga0310910_1144991013300031946SoilITVLVFGWSENRQHEISANEMARIEQARLGLRRPA
Ga0310909_1035406113300031947SoilILALLAIAVTVLVFGWSENREREIRANEIARMERARLGLGRPA
Ga0310909_1040995213300031947SoilWIVVLGLLAAAVTVLVFGWSENREHEISANEMARIEQARLGLGRPA
Ga0306926_1040384653300031954SoilIWYIFWLAILGLLAILATAMVFGWSENREREISAGEMARMERARLGLGRPA
Ga0306922_1100495113300032001SoilVILGLLAILLIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA
Ga0306922_1215101323300032001SoilLGLVAAAVTVLVFGWSENRQHEISANEMAQLERARLGLGWPA
Ga0310911_1025554913300032035SoilLAVAVTILVFGWSENRQHEISANEMARIEQVRLGLGRPA
Ga0310911_1045293523300032035SoilAILGLLAILVMVMVFGWSEDRQHEISAAEMARMERARLARGRPA
Ga0310911_1093350723300032035SoilLGLLAILLIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA
Ga0318559_1021303533300032039SoilVTLGLLAAAVTVLVFGWSENRQHEISANEMARIEQARLGLGRPA
Ga0318532_1006722933300032051SoilLLAAVVTVLVFGWSENREREIPASQIARMESARLGLGRPA
Ga0318532_1037213313300032051SoilLAILGLLAVAVTMLVFGWSENREREIPAAEIARVERARLGFGRPA
Ga0318505_1047981013300032060SoilLAAAVGILAFGWSENREREVPASEIARLERARLGLGRPA
Ga0306924_1139686613300032076SoilVGILVFGWSENREREISAGEIARLERARLALGSPA
Ga0318540_1030070113300032094SoilIWWIVIVGLLAILFIVLVFGWSENREHEITATEMARLERARLGLGRPA
Ga0306920_10012791413300032261SoilLVILGLLAILIIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA
Ga0335074_1128444723300032895SoilILGLLGIAVTVLVFGWSEDREAEIPAAELARLERGRAA
Ga0335073_1069338413300033134SoilVTVLVSGWSDEREHAISAEEIAQLEQARSGLGQPAE
Ga0310914_1014998643300033289SoilWIVIIGLLAIAVGILVFGWSENREHEISAGEIAHLERARLGLGRPA
Ga0310914_1106051323300033289SoilLGLLAILIIVLVFGWSENRQHEITAGEMAQLERARLGLGRPA


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