Metagenome / Metatranscriptome Family F087593

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087593
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	80 residues
Representative Sequence	LVVKLRCYLLSLLRIHRPDCEHCKAREKCGLEMRERLEELKWRTQPNLLKMEVHGEVVEVFDSKPGEVAASLPISLVQRVKKAG
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	70.19 %
% of genes near scaffold ends (potentially truncated)	30.00 %
% of genes from short scaffolds (< 2000 bps)	63.64 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.727 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (19.091 % of family members)
Environment Ontology (ENVO)	Unclassified (31.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.61% β-sheet: 0.00% Coil/Unstructured: 63.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF11741	AMIN	6.36
PF13492	GAF_3	3.64
PF13185	GAF_2	2.73
PF14520	HHH_5	1.82
PF00196	GerE	1.82
PF12161	HsdM_N	1.82
PF13650	Asp_protease_2	0.91
PF06262	Zincin_1	0.91
PF13181	TPR_8	0.91
PF05048	NosD	0.91
PF13751	DDE_Tnp_1_6	0.91
PF09286	Pro-kuma_activ	0.91
PF07702	UTRA	0.91
PF07719	TPR_2	0.91
PF07335	Glyco_hydro_75	0.91
PF01548	DEDD_Tnp_IS110	0.91
PF07730	HisKA_3	0.91
PF07690	MFS_1	0.91
PF11950	DUF3467	0.91
PF12867	DinB_2	0.91
PF06348	DUF1059	0.91
PF00589	Phage_integrase	0.91
PF12146	Hydrolase_4	0.91
PF01431	Peptidase_M13	0.91
PF12686	DUF3800	0.91
PF13385	Laminin_G_3	0.91
PF13090	PP_kinase_C	0.91
PF01609	DDE_Tnp_1	0.91
PF03544	TonB_C	0.91
PF00027	cNMP_binding	0.91
PF13545	HTH_Crp_2	0.91
PF00383	dCMP_cyt_deam_1	0.91
PF01384	PHO4	0.91
PF13564	DoxX_2	0.91
PF14321	DUF4382	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0306	Phosphate/sulfate permease	Inorganic ion transport and metabolism [P]	0.91
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.91
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.91
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.91
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.91
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.91
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
All Organisms	root	All Organisms	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
cellular organisms	root	All Organisms → cellular organisms	46.36 %
Viruses	superkingdom	All Organisms → Viruses	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.64 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.64 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.64 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.91 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.64 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.91 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.91 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Sphingomonas panacisoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas panacisoli	0.91 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.91 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.91 %
Sphingomonas panacisoli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas panacisoli	0.91 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.91 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100953835	Not Available	741	Open in IMG/M
3300002245\|JGIcombinedJ26739_101248064	Not Available	633	Open in IMG/M
3300003351\|JGI26346J50198_1003764	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300005467\|Ga0070706_100130057	All Organisms → cellular organisms → Bacteria	2349	Open in IMG/M
3300005468\|Ga0070707_100062822	All Organisms → cellular organisms → Bacteria → Acidobacteria	3563	Open in IMG/M
3300005471\|Ga0070698_100094753	All Organisms → cellular organisms → Bacteria	2964	Open in IMG/M
3300005569\|Ga0066705_10505074	Not Available	756	Open in IMG/M
3300006028\|Ga0070717_10000967	All Organisms → cellular organisms → Bacteria	19187	Open in IMG/M
3300006047\|Ga0075024_100832419	Not Available	519	Open in IMG/M
3300006174\|Ga0075014_100867054	Not Available	538	Open in IMG/M
3300006175\|Ga0070712_100220819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas panacisoli	1500	Open in IMG/M
3300006176\|Ga0070765_101769606	Not Available	580	Open in IMG/M
3300006893\|Ga0073928_10356869	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1080	Open in IMG/M
3300006893\|Ga0073928_11043281	Not Available	555	Open in IMG/M
3300007982\|Ga0102924_1088801	Not Available	1600	Open in IMG/M
3300009089\|Ga0099828_10475900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1127	Open in IMG/M
3300009518\|Ga0116128_1017164	Not Available	2491	Open in IMG/M
3300009616\|Ga0116111_1072525	Not Available	927	Open in IMG/M
3300009640\|Ga0116126_1073705	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300009641\|Ga0116120_1001147	All Organisms → cellular organisms → Bacteria	19095	Open in IMG/M
3300011269\|Ga0137392_10197128	Not Available	1645	Open in IMG/M
3300011271\|Ga0137393_10508665	Not Available	1033	Open in IMG/M
3300012096\|Ga0137389_10221496	All Organisms → cellular organisms → Bacteria → Acidobacteria	1582	Open in IMG/M
3300012205\|Ga0137362_10358273	Not Available	1263	Open in IMG/M
3300012918\|Ga0137396_10123583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1867	Open in IMG/M
3300014164\|Ga0181532_10058990	All Organisms → cellular organisms → Bacteria	2501	Open in IMG/M
3300014165\|Ga0181523_10556532	Not Available	631	Open in IMG/M
3300014165\|Ga0181523_10573099	Not Available	621	Open in IMG/M
3300014200\|Ga0181526_10278788	Not Available	1065	Open in IMG/M
3300014489\|Ga0182018_10009300	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7230	Open in IMG/M
3300014495\|Ga0182015_10012484	All Organisms → cellular organisms → Bacteria	7525	Open in IMG/M
3300014501\|Ga0182024_11057222	Not Available	963	Open in IMG/M
3300017822\|Ga0187802_10217128	Not Available	737	Open in IMG/M
3300017822\|Ga0187802_10311213	Not Available	615	Open in IMG/M
3300017823\|Ga0187818_10053800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1731	Open in IMG/M
3300017823\|Ga0187818_10446878	Not Available	577	Open in IMG/M
3300017931\|Ga0187877_1057591	Not Available	1744	Open in IMG/M
3300017943\|Ga0187819_10005608	All Organisms → cellular organisms → Bacteria	6926	Open in IMG/M
3300017943\|Ga0187819_10328080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300017946\|Ga0187879_10165102	Not Available	1248	Open in IMG/M
3300017995\|Ga0187816_10239120	Not Available	792	Open in IMG/M
3300018002\|Ga0187868_1010982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4717	Open in IMG/M
3300018006\|Ga0187804_10403799	Not Available	605	Open in IMG/M
3300018012\|Ga0187810_10046626	Not Available	1626	Open in IMG/M
3300018013\|Ga0187873_1351468	Not Available	538	Open in IMG/M
3300018014\|Ga0187860_1045398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2262	Open in IMG/M
3300018017\|Ga0187872_10047565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2310	Open in IMG/M
3300018017\|Ga0187872_10392893	Not Available	588	Open in IMG/M
3300018019\|Ga0187874_10133408	Not Available	1059	Open in IMG/M
3300018033\|Ga0187867_10003588	All Organisms → cellular organisms → Bacteria → Acidobacteria	12341	Open in IMG/M
3300018033\|Ga0187867_10006450	All Organisms → cellular organisms → Bacteria	8695	Open in IMG/M
3300018033\|Ga0187867_10010634	All Organisms → cellular organisms → Bacteria → Proteobacteria	6381	Open in IMG/M
3300018034\|Ga0187863_10083758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1793	Open in IMG/M
3300018034\|Ga0187863_10090947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1713	Open in IMG/M
3300018034\|Ga0187863_10169249	Not Available	1218	Open in IMG/M
3300018037\|Ga0187883_10025423	All Organisms → cellular organisms → Bacteria	3241	Open in IMG/M
3300018037\|Ga0187883_10164233	Not Available	1141	Open in IMG/M
3300018040\|Ga0187862_10572027	Not Available	672	Open in IMG/M
3300018042\|Ga0187871_10028847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3488	Open in IMG/M
3300018044\|Ga0187890_10835314	Not Available	521	Open in IMG/M
3300018057\|Ga0187858_10174348	Not Available	1418	Open in IMG/M
3300018057\|Ga0187858_10435469	Not Available	809	Open in IMG/M
3300018062\|Ga0187784_10440935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300018085\|Ga0187772_10102934	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300020021\|Ga0193726_1218937	Not Available	790	Open in IMG/M
3300020580\|Ga0210403_10035458	All Organisms → cellular organisms → Bacteria	3990	Open in IMG/M
3300021170\|Ga0210400_10446162	Not Available	1067	Open in IMG/M
3300021170\|Ga0210400_10993579	Not Available	682	Open in IMG/M
3300021170\|Ga0210400_11672578	Not Available	501	Open in IMG/M
3300021171\|Ga0210405_10002088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21209	Open in IMG/M
3300021406\|Ga0210386_10968842	Not Available	726	Open in IMG/M
3300021432\|Ga0210384_11440842	Not Available	594	Open in IMG/M
3300021479\|Ga0210410_10355931	Not Available	1312	Open in IMG/M
3300021479\|Ga0210410_10888822	Not Available	778	Open in IMG/M
3300022532\|Ga0242655_10089896	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300022532\|Ga0242655_10135594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300022557\|Ga0212123_10781726	Not Available	576	Open in IMG/M
3300022724\|Ga0242665_10041714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1184	Open in IMG/M
3300022881\|Ga0224545_1002062	All Organisms → cellular organisms → Bacteria	3800	Open in IMG/M
3300022881\|Ga0224545_1003785	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300025576\|Ga0208820_1004402	All Organisms → cellular organisms → Bacteria	6035	Open in IMG/M
3300025910\|Ga0207684_10058341	All Organisms → cellular organisms → Bacteria → Acidobacteria	3275	Open in IMG/M
3300025922\|Ga0207646_10084862	All Organisms → cellular organisms → Bacteria	2833	Open in IMG/M
3300026551\|Ga0209648_10445329	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300027652\|Ga0209007_1004007	All Organisms → cellular organisms → Bacteria	4100	Open in IMG/M
3300027908\|Ga0209006_10133078	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	2190	Open in IMG/M
3300028536\|Ga0137415_10047214	All Organisms → cellular organisms → Bacteria	4192	Open in IMG/M
3300028906\|Ga0308309_11246271	Not Available	640	Open in IMG/M
3300030740\|Ga0265460_10850703	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300030741\|Ga0265459_12228458	Not Available	665	Open in IMG/M
3300030940\|Ga0265740_1047383	Not Available	522	Open in IMG/M
3300031708\|Ga0310686_102848260	All Organisms → cellular organisms → Bacteria → Acidobacteria	5173	Open in IMG/M
3300031708\|Ga0310686_116053964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300031708\|Ga0310686_118119926	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	5379	Open in IMG/M
3300031715\|Ga0307476_10001965	All Organisms → cellular organisms → Bacteria → Acidobacteria	12370	Open in IMG/M
3300031754\|Ga0307475_10458017	All Organisms → Viruses → Predicted Viral	1025	Open in IMG/M
3300031754\|Ga0307475_11313958	Not Available	560	Open in IMG/M
3300031823\|Ga0307478_10035758	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	3612	Open in IMG/M
3300031823\|Ga0307478_11302783	Not Available	604	Open in IMG/M
3300031962\|Ga0307479_11056097	Not Available	780	Open in IMG/M
3300031962\|Ga0307479_12187459	Not Available	500	Open in IMG/M
3300032160\|Ga0311301_10056872	Not Available	8700	Open in IMG/M
3300032515\|Ga0348332_12446031	Not Available	1159	Open in IMG/M
3300032805\|Ga0335078_10014620	All Organisms → cellular organisms → Bacteria → Acidobacteria	11645	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.18%
Aquatic	Environmental → Aquatic	41.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.45%
Freshwater	Environmental → Aquatic → Freshwater	36.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.64%
Sediment	Environmental → Aquatic → Sediment	1.82%
Peat	Environmental → Terrestrial → Peat	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	36.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.55%
Loam	Environmental → Terrestrial → Soil → Loam	14.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.36%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.64%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.55%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.64%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	19.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.64%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.82%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022881	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 20-24	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1009538351	3300002245	Forest Soil	VKLRCHLLSLLRIHPLSCEHCQVSEKFGLEMRERLEELNRRMQPNLLKKEIHREIVEGFDSKPSEVLASAPISSAQREKKAG*
JGIcombinedJ26739_1012480641	3300002245	Forest Soil	PEANGPNSARLVVKLKCYLLSLLRIHGSDCAHCKAREIYGDEMRKRLEELNWRTQPNLLKMEVHGEVVEVFDSKPGEVAATLPISLVQRVKKAG*
JGI26346J50198_10037642	3300003351	Bog Forest Soil	VNLRCYLFSLLRIHRPDCEHCDAHETRGDEMRKRLEELNWRTQPGSLNHEDHGGAAEVLDSEPGEFAASPPTSLNAKQQKKKKIA*
Ga0070706_1001300573	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RAVPASRDATSPEANGLNAVRVVVKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQVSDSKSGELVATPPISSAQRVKKAG*
Ga0070707_1000628223	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQVSDSKSGELVATPPISSAQRVKKAG*
Ga0070698_1000947531	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQVSDSKSGELVASPPISSAQRVKKAG*
Ga0066705_105050742	3300005569	Soil	VKLRCYLLSLLRTHRLDCEHCKDREKCGIEMRERLAELNSRTLPHLIKKDVHGEVVPDFDSKPSEIVASLPSLSAQQMKKAS*
Ga0070766_100194518	3300005921	Soil	VKLRCYLLSLLRIHRPYCERCNAREIYGDDMRKRLEELNWRTQPRSLNNEDHGEAVNVFDSKPEVVAGSATSR*
Ga0070717_1000096714	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VKLRCYLLSLLRIHRLDCEHCEAREKCGIEMRERLAELNSRTQPKLVKKGVHGEAVPDFDSKAGEVVAIPPSLSAQQMKKAG*
Ga0075024_1008324191	3300006047	Watersheds	VKFRCYLSSLLRIHRPDCEHCKAREKCGIEMRERLAELNSRTQTYSFHTGNQGQVVGVFDSRPDEVVVSQHVSLVEPMEKAG*
Ga0075014_1008670541	3300006174	Watersheds	RPDCEHCKAREKSGLEMRVRLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVARTPISLAHQGKKAG*
Ga0070712_1002208192	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VKLRCYLLSLLRIHRLDCEHCEAREKCGIEMRERLAELNSRTQPKLVKKGVHGEAVPDFDSKAGEVVAI
Ga0070765_1017696061	3300006176	Soil	LRIHRPDCEHCKAREKCGLEMRERLEELKWRTQPNLLKMEVHGEVVEVFDSKPGEVAASLPISLVQRVKKAG*
Ga0073928_103568692	3300006893	Iron-Sulfur Acid Spring	MGGCCEVVVKLRCYLLSLLRIHPLGCEHCKASEKSGVEMRERLEELNRQTQPNLLKKEIHGEIAEGVDSKPSEGLASAPISSARREKKAG*
Ga0073928_110432811	3300006893	Iron-Sulfur Acid Spring	VKLRCYLLSFLRIHPRSCEHCKAGEKSGLEMRERLEELNRQPNLLKQEIHGEIVESFDSKPSEVLASAPVSSAKREKKAG*
Ga0102924_10888012	3300007982	Iron-Sulfur Acid Spring	VKLRCYLSSFFRIHRPDCEHCKAREECGIAMRERLAELNWRAQPNTFKKGAHGDSVQHFDSKPGEVVESPPNLSARPVKKAG*
Ga0099828_104759001	3300009089	Vadose Zone Soil	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQISDSKSGELVATPPISSAQRVKKAG*
Ga0116128_10171642	3300009518	Peatland	VKLRCYLLSLLRIHRSDCEHCNARETCGDEMRRRLEELNWRTHPHSLTSGDHEEVVGVFDSKPSEVVASPPISLSAAQKIA*
Ga0116111_10725251	3300009616	Peatland	VKLRCYLLSLLRIHRPDCEHCKASAKYGLEIRERLEELNRRTQPNLLKKEVHGEVVEVFDSKPGDVEASAPISSAEQVNKAS*
Ga0116126_10737052	3300009640	Peatland	VKLRCYLLSVLRIHGPDCEHCNAHETCGYEMRKRLEELSGRTQLHSLSNGNHEEVVGVFDSKPSEVVASPPISLVQQQNKIA*
Ga0116120_100114710	3300009641	Peatland	VKLRCYLLSLLRIHGPDCEHCNVRETCGYEMRKRLEELNWRTKPYSPNNGDHGEVVEVFDSKPGEVVASQHVPLAQQDRAG*
Ga0136449_1001258342	3300010379	Peatlands Soil	MSLLRIHRPVCEHCNARERRGDEMRNRLEGLSWRTQPRSLNNGDQGEVVEVFDSKPGEVMASPLFR*
Ga0137392_101971281	3300011269	Vadose Zone Soil	RPDCEHCKAREKCGIELSERLAELNGRTQPNLVKKGVHGEVVPDLDSKPGDVVAGPPISSAQQVKKAG*
Ga0137393_105086652	3300011271	Vadose Zone Soil	VKLRCHFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQISDSKSGELVATPPISSAQRVKKAG*
Ga0137389_102214963	3300012096	Vadose Zone Soil	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKGVQASDSKSGELVATPPISSAQRVKKAG*
Ga0137362_103582732	3300012205	Vadose Zone Soil	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQVSDSKSGELVATPPISSARRVKKAG*
Ga0137396_101235833	3300012918	Vadose Zone Soil	VKLRCYFLSLLRIHRPDCERCKAREKGGLEMRERLAELNRRTQSNLRKKEVHGKVVEVSNSKSGEVVATPPISSAQRVKKAG*
Ga0181532_100589902	3300014164	Bog	VKLRCYLLSLLRIHRRDCEHCKAREKSGLEMRERLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVARTPISL*
Ga0181523_105565321	3300014165	Bog	LNPARWFVKLRCYLLSLLRIHHPDCEHCNVRETCGHEMRKRLEELNWRRQPTVLKKEVHGDVVEVSDSAPGEVLASPPAQQAKKAG*
Ga0181523_105730991	3300014165	Bog	NPARWFVKLRCYLLSLLRIHHPDCEHCTARETGGDGMRRRLEELNSWKQPNFLKNEVHGEVVEVFDPEPGEVLASPQISLKQEVKKAG*
Ga0181526_102787881	3300014200	Bog	LLRIHHPDCEHCTARETGGDGMRRRLEELNSWKQPNFLKNEVHGEVVEVFDPEPGEVLASPQISLKQEVKKAG*
Ga0182018_100093009	3300014489	Palsa	RIHHPDCDHCNLRGTCGEAMRKRLEELNWRNQPNLLKKEVHGEVPEVSGSTPDDGVASPQISLAQRGKKAG*
Ga0182010_100021675	3300014490	Fen	VRLRFRICYLLSSLRIHNPACEHCNDRATCGEEMRQRLEELNWRTQPRSLNNGGSGVPVEASDSKPPKV*
Ga0182015_100124849	3300014495	Palsa	VKLRCYLLSLLRIHHPDCDHCNLRETCGEAMRKRLEELNWRNQPNLLKKEVHGEVPEVSGSTPDDGVASPQISLAQRGKKAG*
Ga0182024_110572222	3300014501	Permafrost	VKLRCYMLSLLRIHPLSCEHCNASEKSGLEMRERLEELNRRTQPNLLKKEVQREIVEGFDSKPSEVLASAPISSAEREKKAG*
Ga0187802_102171283	3300017822	Freshwater Sediment	VKLKLRCYLLSLLRIHRPDCEHCKAREKCGIEMRERLAELNYRTQPHSLINGDLAEVVQVFDSKPGEGVTSPPTSFAHRMKKAG
Ga0187802_103112131	3300017822	Freshwater Sediment	VKLRCYLLSLLRIHRRDCEHCKAREKCGLEMRERLEELNWPMQPRSLNNEDHGEAVKVFDSKSGEVVSSAMSR
Ga0187818_100538002	3300017823	Freshwater Sediment	VKLRCYLLSLLRSHRPDCEHCKAREKSGLEMRERLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVARTPISLAHQGKKAG
Ga0187818_104468781	3300017823	Freshwater Sediment	PREAIGPEPCEVVVKLRCYLLSVLRIHPPDCEHCKAREIYGDEMRKRLEGLSGRTQPHSLNNGDHGEAVKVFDSEPGEPVASPPVSLKKAG
Ga0187877_10575911	3300017931	Peatland	VKLRCYLLSLLRIHGPDCEHCNVRETCGYEMRKRLEELNWRTKPYSPNNGDHGEVVEVFDSKPGEVVASQHVPLAQQDRAG
Ga0187819_100056088	3300017943	Freshwater Sediment	VKLSCYLLSLLRIHRLDCEHCKAREKCGLQMRERLEELNWGTQPTLLNNEDHGEAVTVFDSKPGELVASPPISLAQQQHQKIA
Ga0187819_103280801	3300017943	Freshwater Sediment	VVKLRCYLLSLLRIHRPDCEHCKAREKSGLEMRERLDELNWRTQPDSLNKGTRGEIVEVDSKPCEVEASSPTPLAQQAKKAG
Ga0187879_101651021	3300017946	Peatland	PPEANGLNPARWFVKLRCYLLSLLRIHHPDCEHCTARETGGDGMRRRLEELNSWKQPNFLKNEVHGEVVEVFDPEPGEVLASPQISLKQEVKKAG
Ga0187816_102391202	3300017995	Freshwater Sediment	ARLVVKFRCYLSSLLRIHRPDCEHCKAREKYGIEMRERLAELNWRTQPNLLKEEIQREVVEVFKSKPGEGFARTLISLAQQRKRAG
Ga0187868_10109826	3300018002	Peatland	DCEHCKAREKCGLEMRERLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVARTPISLAHQGKKAG
Ga0187804_104037992	3300018006	Freshwater Sediment	VKLKLRCYLLSLLRIHRPDCEHCKAREKCGIEMRERLAELNYRTQPHSLNNGGHAEVVQVFDSKPGEGVTSPPMSFVHRMKKAG
Ga0187810_100466263	3300018012	Freshwater Sediment	VKLRCYLLSLLRIHRPDCEHCKAREKSGLEMRERLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVARTPISLAHQGKKAG
Ga0187873_13514681	3300018013	Peatland	RCYLLSLLRIHRPDCEHCKACAKYGLEIRERLEELNRRTQPNLLKKEVHGEVVEVFDSKPGDVEASAPISSAEQVNKAS
Ga0187860_10453982	3300018014	Peatland	VKLRCYLLSLLRIHRSDCEHCNARETCGDEMRRRLEELNWRTHPHSLTSGDHEEVVGVFDSKPSEVVASPPISLSAAQKIA
Ga0187872_100475654	3300018017	Peatland	VKLRCYLLSLLRIHRPDCEHCKACAKYGLEIRERLEELNRRTQPNLLKKEVHGEVVEVFDSKPG
Ga0187872_103928932	3300018017	Peatland	VKVRCYLLSVLRIHRPDCEHCKAREKSGLEMRERLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVV
Ga0187874_101334081	3300018019	Peatland	VKLRCYLLSLLRIHRPDCEHCKACAKYGLEIRERLEELNRRTQPNLLKKEVHGEVVEVFDSKPGDVEASAPISSAEQVNKAS
Ga0187867_100035888	3300018033	Peatland	VKLRCYLLSLLRIHHPDCDHCNLRETCGEAMRKRLEELNWRNQPNLLKKEVHGEVPEVSGSTPDDGLASPQISLAQRGKKAG
Ga0187867_100064501	3300018033	Peatland	VKLRCYLLSLLRIHHPDCEHCTARETGGDGMRRRLEELNSWKQPNFLKNEVHGEVVEVFDPEPGEVLASPQISLKQEVKKAG
Ga0187867_100106345	3300018033	Peatland	VKLRCYLLSLLRIHHPDCEHCNVRETCGHEMRKRLEELNWRRQPTVLKKEVHGDVVEVSDSAPGEVLASPPAQQAKKAG
Ga0187863_100837585	3300018034	Peatland	VKLRCYLLSLLRIHHPDCDHCNLRETCGEAMRKRLEELNWRNQPTLLKKEVHGEVPEVSGSTPDDGVASPQISLAQRGKNAG
Ga0187863_100909472	3300018034	Peatland	VKLRCYLLSLLRIHRPDCEHCTARETCGDGMRRRLEELNSWKQPNFLKNEVHGEVVEVFDSEPGEALAGPQISLAQEVKKAG
Ga0187863_101692493	3300018034	Peatland	HHPDCEHCNVRETCGHEMRKRLEELNWRRQPTVLKKEVHGDVVEVSDSAPGEVLASPPAQQAKKAG
Ga0187883_100254232	3300018037	Peatland	VKLRCYLLSLLRIHHPDCEHCNVRETCGHEMRKRLEELNWRTQPYSPNNGDHGEVVEVFDSKPSEVVARMPISLAHQRKKAG
Ga0187883_101642332	3300018037	Peatland	VKLRCYLLSLLRIHRPDCEHCKAREKCGLEMRERLDELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVARTPISLAHQGKKAG
Ga0187862_105720272	3300018040	Peatland	PARWFVKLRCYLLSLLRIHHPDCEHCTARETGGDGMRRRLEELNSWKQPNFLKNEVHGEVVEVFDPEPGEVLASPQISLKQEVKKAG
Ga0187871_100288476	3300018042	Peatland	LSLLRIHHPDCEHCNVRETCGHEMRKRLEELNWRTQPYSPNNGDHGEVVEVFDSKPSEVVARMPISLAHQRKKAG
Ga0187890_108353142	3300018044	Peatland	DAMSPGGLNPPSEVSVKLRCSLLSLLRIHRADCEHCNARGTSGELMRRRLEELNWRTQQNVSNYGDHAEGIDVGVFDSGPREVVSTSISLKAGKKIA
Ga0187858_101743483	3300018057	Peatland	VKLRCYLLSLLRIHRPDCEHCKASAKYGLEIRERLEELNRRTQPNLLKKEVHGEVVEVFDSKPGDVEASAPISSAEQVNKAS
Ga0187858_104354692	3300018057	Peatland	VKLRCRLLSLLRIRHPDCEHCNVRETCGHEMRKRLEELNWRRQPTVLKKEVHGDVVEVSDSAPGEVLASPPAQQAKKAG
Ga0187784_104409351	3300018062	Tropical Peatland	VKLRCYLLSFLRIHSSDCEHCKALEKCGLEMRARLQELNWRTQPNLVEKGAQGEAVPHFDSKPDEALASPPTSFAHQMKKAG
Ga0187772_101029341	3300018085	Tropical Peatland	VKLRCYLLSFLRIHRPDCEHCKALEKCGLEMRARLQELNWRTQPNLVEKGAQGEAVPHFDSKPDEALASPPTSFAHQMKKAG
Ga0193726_12189371	3300020021	Soil	KIHRPTCAQCKALEKCGLEMREPLEELNWRTQPHSLYRELHGEVVEVFNSKPGEVAASPPFRWLGE
Ga0210403_100354586	3300020580	Soil	VKLRCYLLSLLRIHPLSCEHCKASERSGLEMRERLKELNRQPNSLNQEIHREIVEGSDSKPSEGLASAPISSAKREKKAG
Ga0210400_104461621	3300021170	Soil	VKLKCYLLSLLRIHRSDCEHCKAREKCGLEMREQLEELNWRTQPNLLIREVHGEVVEVFDSYPREVAASTPISVAQRVRRLVGGEGAASAQTRFHKP
Ga0210400_109935792	3300021170	Soil	VKLKCYLLSLLRIHGSDCAHCKAREIYGDEMRKRLAELNWRTQPNLLKKEVHGEIVEVFDSYPREVAATLPISLVQRVKKVG
Ga0210400_116725782	3300021170	Soil	HRPDCELCKARETCGDEMRKRLEELSGRMQSNLLKMEVHGEVVEAFDSKPGEVAGSPPISLVERVKKTG
Ga0210405_1000208813	3300021171	Soil	VDATPRGANDLNPGRWVLSLRCYLLSLLRIHRPDCELRKARETCGDEMRKRLEELNWPTQPPSLNNEDHGEAVKVIDSKSEVVAS
Ga0210386_109688422	3300021406	Soil	VKLRCYLLSLLRIHRPDCELCKARETCGDEMRKRLEELSGRMQSNLLKMEVHGEVVEAFDSKPGEVAGSPPISLVERVKKTG
Ga0210384_114408421	3300021432	Soil	VKLRCYLLSLLRIHRPYCKHCNAREIYGDEMRKRLEELSGRMQPRLLDHEDHEQAVKVFNSEPGELAASPPISLAQQDKKIA
Ga0210410_103559311	3300021479	Soil	QNPARLVVKLRCYLLSLLRIHRPDCELCKARETCGDEMRKRLEELSGRMQSNLLKMEVHGEVVEAFDSKPGEVAGSPPISLVERVKKTG
Ga0210410_108888221	3300021479	Soil	VKLRCYLLSLLRIHPLSCEHCKAIEKSGVKMRERLEELNRQTQPNLLKKEVRGEIVEGSDSKPSEVLASAPISSTQREKKTG
Ga0242655_100898962	3300022532	Soil	VPPSRDEHPLRRMDRCWEVVVKLRCYLLSLLRIHSLSCEHCKASERSGLEMRERLKELNRQPDSFKQEIHREIAEGSDSKPSEGLASAPISSAKREKKAG
Ga0242655_101355941	3300022532	Soil	VKLRCYLLSLLRIHRPDCELCKARETCGDEMRKRLEELSGRTQPNLLKKEVHGDIVEVFDSKPGEVAGSPPISLVERVKKIG
Ga0212123_107817262	3300022557	Iron-Sulfur Acid Spring	VKLRCYLLSLLRIHPLGCEHCKASEKSGVEMRERLEELNRQTQPNLLKKEIHGEIAEGVDSKPSEGLASAPISSARREKKAG
Ga0242665_100417141	3300022724	Soil	VKLRCYLLSLLRIHRPDCELCKARETCGDEMRKRLEELSGRTQPNLLKKEVHGDIVEVFDSKPGEVAGSPPISLVERVKKTG
Ga0224545_10020622	3300022881	Soil	VKLRCYLLSLLRIHHPDCKHCNLRETCGEAMRKRLEELNWRNQTNLLKKEVHGEVPEVSGSTPDDGVASPQISLAQRGKKAG
Ga0224545_10037853	3300022881	Soil	VKLRCYLLSLLRIRHPDCEHCNVRETRGHEMRKRLEELNWRRQPTVLKKEVHGDAVEVSNSALPGEVLASPQAQHAKKAG
Ga0208820_10044024	3300025576	Peatland	VKLRCYLLSLLRIHRSDCEHCKAREKCGLEMRERLEELNWRTQPYSPNNGDHGEVVEVFDSKPGEVVASQHVPLAQQDRAG
Ga0207684_100583412	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQVSDSKSGELVASPPISSAQRVKKAG
Ga0207646_100848622	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VKLRCYFLSLLRIHRPDCEHCKAREKCGLEMRERLAELNRRTQSNLLKKEVHGKVVQVSDSKSGELVATPPISSAQRVKKAG
Ga0209648_104453292	3300026551	Grasslands Soil	VKLRCYFLSLLRIHRPDCEHCRAREKCGLEMRERLAELNRRTKSNLLKEEVHGEVVVVSDSKSGKVVATPPTSSAQQVKKAG
Ga0209007_10040074	3300027652	Forest Soil	VKLRCHLLSLLRIHPLSCEHCQVSEKFGLEMRERLEELNRRMQPNLLKKEIHREIVEGFDSKPSEVLASAPISSAQREKKAG
Ga0209693_100853235	3300027855	Soil	VKLRCYLLSLLRIHRPYCERCNAREIYGDDMRKRLEELNWRTQPRSLNNEDHGEAVNVFDSKPEVVASSATSR
Ga0209380_100152853	3300027889	Soil	VKLRCYLLSLLRIHRPYCERCNAREIYGDDMRKRLEELNWRTQPRSLNNEDHGEAVNVFDSKPEVVAGSATSR
Ga0209006_101330782	3300027908	Forest Soil	VKLKCYLLSLLRIHGSDCAHCKAREIYGDEMRKRLEELNWRTQPNLLKMEVHGEVVEVFDSKPGEVAATLPISLVQRVKKAG
Ga0137415_100472143	3300028536	Vadose Zone Soil	MKLRCYLLSLLRIHRPDCERCKAREKGGLEMRERLAELNRRTQSNLLKKEVHGKVVEVSNSKSGEVVATPPISSAQRVKKAG
Ga0308309_112462711	3300028906	Soil	LVVKLRCYLLSLLRIHRPDCEHCKAREKCGLEMRERLEELKWRTQPNLLKMEVHGEVVEVFDSKPGEVAASLPISLVQRVKKAG
Ga0247275_10188134	3300029817	Soil	VKLRCYLLSLLRIHGPDCEHCNVRETCGYEMRKRLEELNWRTKPYSPNNGDHGEVVEVFDSKPGEVVAS
Ga0265460_108507032	3300030740	Soil	VKLRCYMLSRLRIHSLSCEHCRASEKSGLEMRERLEELNRQTQPNLLKKEIHREIVKGFDSKPGEVLASAPISSALREKKAG
Ga0265459_122284581	3300030741	Soil	VKLRCYMLSFLRIHPLGCEHCKASEKSGVEMRERLEELNRQTQPNLLKKEIHREIVKGFDSKPGEVLASAPISSALREKKAG
Ga0265740_10473831	3300030940	Soil	PVVPFENSPLSCENCKASEKSGVEMRERLEELNRRTQPNLLKKEIHRETVEGVDSKSSEVLASAPISSAQREKKAG
Ga0310686_1028482607	3300031708	Soil	VKLRCYLWSLLRIHRPDCERCKAREKCGIEMRERLEELNWRAQPNLLNDEDHGEAVKAFDSEPRELVASPTISLAQEQKKIA
Ga0310686_1160539641	3300031708	Soil	LWSLLRIHRPDCAHCKGGEKCGLEMRERLEELSGRTQPLSLNNGDHGEAVKVFDSEPGELVASPPISLAQQHQKIA
Ga0310686_1181199264	3300031708	Soil	VKLRCYLLSLLRVHPLGCEHCKASEKSGVEMRERLEELNRQTQPNLLKKEIHGEIAEGVDSKPSEVLASAPISSAQREKKAG
Ga0307476_100019659	3300031715	Hardwood Forest Soil	VKLRCYLLSFLRIHRPYCERCTAREIYGDAMRKRLEELSGQTPPRSLNSGDHGEAVKVFDSGPEVVASSAISR
Ga0307475_104580171	3300031754	Hardwood Forest Soil	NLARWLVKLRCYLLSLLTIHRPDCEHCNARETCGDQMRRRLEELNWRTQPHSLNDGDHEELVGVFDSKPDEVVAGTPLSLKAHAGKKTA
Ga0307475_113139582	3300031754	Hardwood Forest Soil	VKLRCYLLSLLRIHRLDCEHCKDREKCGIEMRERLAELNSRTQPHLVKKDVHGEVVPDFDSKPGEVVASPPSLSAQQMKKAS
Ga0307478_100357584	3300031823	Hardwood Forest Soil	VKLRCYLLSLLRIHRPDCELCKAREKCGFQMRERLEELNWRTQPSSLNNEDYGGAVRVFDSKPGELVASPAISLEQQQHQKIA
Ga0307478_113027831	3300031823	Hardwood Forest Soil	VKLRCYLLSLLRIHPPDCEHCKARDKCGVEMRERLEELNGRTEPYSINNGNHAEVVQVFDSRSAEVALRPISLEQLEKKAG
Ga0307479_110560971	3300031962	Hardwood Forest Soil	LLRIHRLDCEHCKDREKCGIEMRERLAELNSRTQPHLVKKDVHGEVVPDFDSKPGEVVASPPSLSAQQMKKAS
Ga0307479_121874591	3300031962	Hardwood Forest Soil	LLSLLRIHHPDCEHCKAREKCGLEMRERLEELNWRTHPNVLKKWAHGEVVEVFDSKPGEVVTSPTISLAQQQNQNKVA
Ga0311301_100568725	3300032160	Peatlands Soil	MSLLRIHRPVCEHCNARERRGDEMRNRLEGLSWRTQPRSLNNGDQGEVVEVFDSKPGEVMASPLFR
Ga0348332_124460312	3300032515	Plant Litter	VKLRCYLWSLLRIHRPDCERCKAREKCGIEMRERLEELNWRPQPNLLNDEDHGEAVKAFDSEPRELVASPTISLAQEQKKIA
Ga0335078_1001462014	3300032805	Soil	VNLRCYVLRLLRIHRPDCENCQAREKCGVEMRKRLEELNWRTQPHPLNSGTHGKTMEADSKPCEVVASSPTPLAKHAKKAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087593

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences