Metagenome / Metatranscriptome Family F087569

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087569
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	78 residues
Representative Sequence	MTAPSVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQKQVIAILD
Number of Associated Samples	82
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.74 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	93.64 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (33.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 57.69% β-sheet: 0.00% Coil/Unstructured: 42.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08281	Sigma70_r4_2	23.64
PF00958	GMP_synt_C	2.73
PF13801	Metal_resist	0.91
PF02195	ParBc	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	2.73

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.91 %
Unclassified	root	N/A	29.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.91 %
Unclassified	root	N/A	29.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.91 %
Unclassified	root	N/A	29.09 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.36 %
Unclassified	root	N/A	29.09 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	60.91 %
Unclassified	root	N/A	29.09 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	60.91 %
Unclassified	root	N/A	29.09 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12477662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	941	Open in IMG/M
3300004480\|Ga0062592_100508309	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300004633\|Ga0066395_10686656	Not Available	607	Open in IMG/M
3300004633\|Ga0066395_10992729	Not Available	512	Open in IMG/M
3300005186\|Ga0066676_11117000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300005332\|Ga0066388_100553782	All Organisms → cellular organisms → Bacteria → Acidobacteria	1779	Open in IMG/M
3300005332\|Ga0066388_101057877	All Organisms → cellular organisms → Bacteria → Acidobacteria	1368	Open in IMG/M
3300005332\|Ga0066388_103031395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300005332\|Ga0066388_105708711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300005332\|Ga0066388_107819541	Not Available	535	Open in IMG/M
3300005367\|Ga0070667_101576427	Not Available	617	Open in IMG/M
3300005434\|Ga0070709_11205276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300005541\|Ga0070733_10170907	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300005557\|Ga0066704_10444039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300005566\|Ga0066693_10380418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300005764\|Ga0066903_107906336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300006175\|Ga0070712_100367684	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300006175\|Ga0070712_101630562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300006358\|Ga0068871_100493483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1103	Open in IMG/M
3300006796\|Ga0066665_11323225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300006854\|Ga0075425_101653592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300006903\|Ga0075426_11371960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300006903\|Ga0075426_11438699	Not Available	524	Open in IMG/M
3300006914\|Ga0075436_101062560	Not Available	609	Open in IMG/M
3300006935\|Ga0081246_1163383	Not Available	528	Open in IMG/M
3300007076\|Ga0075435_101342508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300009012\|Ga0066710_104291986	Not Available	533	Open in IMG/M
3300009038\|Ga0099829_11321252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300009162\|Ga0075423_11846864	Not Available	652	Open in IMG/M
3300009162\|Ga0075423_11953944	Not Available	634	Open in IMG/M
3300009545\|Ga0105237_12166785	Not Available	565	Open in IMG/M
3300010047\|Ga0126382_10243078	Not Available	1313	Open in IMG/M
3300010048\|Ga0126373_10149915	All Organisms → cellular organisms → Bacteria	2215	Open in IMG/M
3300010358\|Ga0126370_10879123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300010360\|Ga0126372_13237569	Not Available	506	Open in IMG/M
3300010362\|Ga0126377_11179334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300010376\|Ga0126381_103816228	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300012202\|Ga0137363_11113235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300012205\|Ga0137362_10899130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300012205\|Ga0137362_11516751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300012205\|Ga0137362_11663819	Not Available	525	Open in IMG/M
3300012209\|Ga0137379_10731032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300012923\|Ga0137359_11750247	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300012925\|Ga0137419_10701946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300012930\|Ga0137407_12434681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300012984\|Ga0164309_10573026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300013306\|Ga0163162_11514259	Not Available	764	Open in IMG/M
3300013308\|Ga0157375_12473616	Not Available	620	Open in IMG/M
3300015371\|Ga0132258_10730307	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300015374\|Ga0132255_101089389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1200	Open in IMG/M
3300015374\|Ga0132255_101104620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1192	Open in IMG/M
3300015374\|Ga0132255_102028498	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	876	Open in IMG/M
3300016294\|Ga0182041_11455602	Not Available	630	Open in IMG/M
3300016294\|Ga0182041_12056700	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300016341\|Ga0182035_10487724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300016341\|Ga0182035_11727672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300016445\|Ga0182038_11996720	Not Available	525	Open in IMG/M
3300020062\|Ga0193724_1040758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	987	Open in IMG/M
3300020140\|Ga0179590_1103154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300020580\|Ga0210403_10073209	All Organisms → cellular organisms → Bacteria → Acidobacteria	2754	Open in IMG/M
3300021478\|Ga0210402_11513330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300021560\|Ga0126371_11456287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300021560\|Ga0126371_12884960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300022726\|Ga0242654_10108350	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300024283\|Ga0247670_1032307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	939	Open in IMG/M
3300024325\|Ga0247678_1047213	Not Available	693	Open in IMG/M
3300025916\|Ga0207663_10835569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300025922\|Ga0207646_10527657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1063	Open in IMG/M
3300027654\|Ga0209799_1103350	Not Available	647	Open in IMG/M
3300027842\|Ga0209580_10264163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	856	Open in IMG/M
3300028379\|Ga0268266_12342309	Not Available	505	Open in IMG/M
3300030847\|Ga0075405_10855413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300030923\|Ga0138296_1087772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300030923\|Ga0138296_1799853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300031022\|Ga0138301_1738171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300031023\|Ga0073998_11597418	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300031057\|Ga0170834_113841290	Not Available	576	Open in IMG/M
3300031128\|Ga0170823_11486201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300031231\|Ga0170824_112843372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300031231\|Ga0170824_115246093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	911	Open in IMG/M
3300031231\|Ga0170824_119304546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	941	Open in IMG/M
3300031446\|Ga0170820_14729839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300031446\|Ga0170820_16653139	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300031469\|Ga0170819_13933530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300031469\|Ga0170819_17463762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300031474\|Ga0170818_108322640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300031545\|Ga0318541_10869288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300031682\|Ga0318560_10157345	All Organisms → cellular organisms → Bacteria → Acidobacteria	1203	Open in IMG/M
3300031753\|Ga0307477_10879663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300031768\|Ga0318509_10456501	Not Available	714	Open in IMG/M
3300031777\|Ga0318543_10229613	Not Available	826	Open in IMG/M
3300031820\|Ga0307473_10134789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1379	Open in IMG/M
3300031820\|Ga0307473_11557420	Not Available	503	Open in IMG/M
3300031831\|Ga0318564_10459937	Not Available	554	Open in IMG/M
3300031833\|Ga0310917_11028757	Not Available	551	Open in IMG/M
3300031946\|Ga0310910_10875536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300031946\|Ga0310910_11337251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300032001\|Ga0306922_11139980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300032051\|Ga0318532_10161584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300032174\|Ga0307470_10201476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1272	Open in IMG/M
3300032174\|Ga0307470_10522552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300032180\|Ga0307471_100300078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1693	Open in IMG/M
3300032180\|Ga0307471_104333433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300032205\|Ga0307472_101249202	Not Available	712	Open in IMG/M
3300033180\|Ga0307510_10444113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300033290\|Ga0318519_10145174	All Organisms → cellular organisms → Bacteria → Acidobacteria	1322	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.64%
Host-Associated	Host-Associated	16.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.64%
Plants	Host-Associated → Plants	16.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Roots	Host-Associated → Plants → Roots	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.91%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	11.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.18%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006935	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031023	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_124776621	3300000789	Soil	MSESTIRQKATLWLAIIFVLGAALGGIFGYALAHHTYAAAPIVLTAEAKRAQRREQMTREVNLNAEQQXQVG
Ga0062592_1005083091	3300004480	Soil	MTEPTVQQKATFWLALVFVLGTALGGFLGYAFAHRSYAAAPAQLTAEQRRAQKREQLAREVGLTPAQQAQVTGILDEAQGEYKAIHAVSDPQ
Ga0066395_106866562	3300004633	Tropical Forest Soil	MTAPTVQQKATIWLALVFVLGIALGAVLGYAFAHRSYAAAVPVQPTADQRRAQKREQLTREVGL
Ga0066395_109927292	3300004633	Tropical Forest Soil	MTAPTVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQKQVIAILDEAQAEYKAIHAVSDPQVDAVRQRSR
Ga0066676_111170001	3300005186	Soil	MTEPNIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYAAEPSVMTAEARRAQKREQLKRDVDLTPDQQ*
Ga0066388_1005537824	3300005332	Tropical Forest Soil	MSEPTVQQKATFWLGLVFVLGTALGGVLGYAFAHRSYADRAPRQLTAEQRRAQKREQLAREVGLTP
Ga0066388_1010578771	3300005332	Tropical Forest Soil	MTAPTVQQKATIWLALVFVLGIALGAVLGYAFAHRSYAAAVPVQPTADQRRAQKREQ
Ga0066388_1030313951	3300005332	Tropical Forest Soil	MTAPTVQQKATLWLSLVFVLGTALGGVLGYAFAHRSYAAAPAQLTAEQRRAQKREQL
Ga0066388_1057087112	3300005332	Tropical Forest Soil	MTEPTVQQKATFWLVLVFVLGTALGGVLGYAFAHRSYADNVPVQLTAEQRRAQKREQLVREVGLTPQQQGQVIAILDEAQGEYKAI
Ga0066388_1078195412	3300005332	Tropical Forest Soil	MPEPTVQQKATLWLALVFVLGTALGAVLGYAFAHRGYAASAPAQLTAEQRRAQKRDQLIREVELTAEQQAQVMAILDQAQSEYKAIHAVSDPQIDAIRLKSRDKIRQILTPEQ
Ga0070667_1015764272	3300005367	Switchgrass Rhizosphere	MTGPTVQQKATFWLALVFALGTALGLVLGYAFAHRSYASAVPAQLTAEQRRAQKREQLAREVGLTADQQAQVAAILDEAQTEYKAIHAVSDPQVDTVRQKS
Ga0070709_112052762	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MADATIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYAAEKPAMSAEARRAQKRAQLAREVGLSGDQQKQVTAILDQAQVEYKAVHEAMDPQIEAIRQKNR
Ga0070733_101709071	3300005541	Surface Soil	MNEPTVQQKASLWLAVVFILGVALGGVLGYAFAHRSYAAAPTQLTAEQRRAQKRTQLAEEVGLTPDQQTQVIAILNQAQTEYKAIHAVSDPQIEV
Ga0066704_104440391	3300005557	Soil	MTEPNIRQKATLWLATVFVLGAALGGVLGYAFAHRSYAAEPSVMTAEARRAQKREQLKRDVGLTPDQQKQVVAILDQAQVEYKA
Ga0066693_103804182	3300005566	Soil	MSEATIRQKATLWLAVVFVLGAALGGILGYAFAHRTYASAPTVLTPEARRAQRRQQMNREVNLTPEQQK
Ga0066903_1079063362	3300005764	Tropical Forest Soil	MSEPTVQQKATFWLGLVFVLGTALGGVLGYAFAHRSYADSAPRQLTAEQRRAQKREQLAREVGLTPAQQAQVAAILDEAQGEY
Ga0070712_1003676843	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTRPTVQQKATFWLALVFVLGTALGAVLGYAFAHRSYAAAPTQLTAEQRRAQKREQLAREVGLTAEQQTQVAAILDQAQTEYKAIHAVSDPQVDTVRQKSRDKIRQILNP
Ga0070712_1016305622	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPTVQQKATFWLALVFVLGTALGGFLGYAFAHRSYAASGPAQLTAEQRRAQKREQLAREVGLTPAQ
Ga0068871_1004934831	3300006358	Miscanthus Rhizosphere	MTEPTIRQKATLWLAIVFVLGAALGGVIGYAFAHHSYASERTLLSADAKRAQRREQ
Ga0066665_113232252	3300006796	Soil	MTEPNIRQKATLWLATVFVLGAALGGVLGYAFAHRRYAAEPSVMTAEARRAQKREQLKRDVGLTPDQQKQVAAILDQAQVEYKVV
Ga0075425_1016535922	3300006854	Populus Rhizosphere	MTEPTVQQKATLWLILVFALGTALGAFLGYAFAHRSYASAAPTQLTAEQRRAQKREQLARDVGLTAEQ
Ga0075426_113719602	3300006903	Populus Rhizosphere	MTQPTVQQKATFWLALVFVMGTALGVVLGYAFAHRSYAAAAPTQLTAEQRRAQKREQLA
Ga0075426_114386991	3300006903	Populus Rhizosphere	MTGPTVQQKATFWLALVFALGTALGLVLGYAFAHRSYASAVPAQLTAEQRRAQK
Ga0075436_1010625602	3300006914	Populus Rhizosphere	MAGPTVQQKATFWLALVFALGTALGLVLGYAFAHRSYASAVPAQLTAEQRRAQKREQLAREVGLTADQQAQVAAILDEAQTEYKAIHAVSDPQVDAVRHK
Ga0081246_11633831	3300006935	Tropical Rainforest Soil	MTAPTVQQKASLWLALVFLLGTGLGVVLGYAFAHRSYAASAPAQLTAEQRRAQKRE
Ga0075435_1013425082	3300007076	Populus Rhizosphere	MADATIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYAAEKPAMSAEARRAQKRAQLAREVGLSGDQQKQVTAILDQAQVEYKAVHEAMDPQIEA
Ga0066710_1042919861	3300009012	Grasslands Soil	MTRTTVQQKATLWLALVFVLGGALGAVLGYAFSHRSYAAAPTQLTAEQRRAQKREQLVRDVG
Ga0099829_113212522	3300009038	Vadose Zone Soil	MTTMTEPTVQQKATLWLAIVFVLGAALGGVFGYYFARRSYASERTVLSAEAKRAQRREKLTREAQLTADQQKQVIAILDQSQVEYKAVHNV
Ga0075423_118468642	3300009162	Populus Rhizosphere	MTQPTVQQKATFWLALVFVLGTALGVVMGYAFAHRSYAAAPSQLTAEQRRAQKREQLVREVGLTAEQQAQVVAILDEAQTEYKAIHAVSDPQVDSVRQKSRD
Ga0075423_119539441	3300009162	Populus Rhizosphere	MTAPTVQQKATLWLGLVFVLGTALGAVLGYAFAHRSYAATAPAQLTAEQRRAQKREQL
Ga0105237_121667852	3300009545	Corn Rhizosphere	MTGPTVQQKATFWLALVFVLGTALGAVLGYAFAHRSYAATSPTQLTAEQRRTQKREQLAREVALTTDL*
Ga0126382_102430783	3300010047	Tropical Forest Soil	MTAPTVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAPPAQLTAEQRRAQKREQLAREVGLTAEQQKQVIAILDEAQGEY
Ga0126382_116485281	3300010047	Tropical Forest Soil	MTSPTVQQRASFWLGLVFVLGIALGAVAGYAFAHRGYAAERTLTAEQKRAQKREQLAREVGFTPEQQKQVVAILDAAQGEYKAIHEVSDPQIDAVRQKTRDKIRLLLTPEQKPK
Ga0126373_101499151	3300010048	Tropical Forest Soil	MSEATVQQKASLWLAVVFILGIALGGVLGYAFAHRSYAAAPQMTAEQRRAQKRAQLVEQVGLNSEQKTQVFAILDQAQQETKA
Ga0126370_108791233	3300010358	Tropical Forest Soil	MTAPTVQQKATLWLSLVFVLGTALGGVLGYAFAHRSYAAAPAQLTAEQRRAQ
Ga0126372_132375691	3300010360	Tropical Forest Soil	MTEPTVQQKATFWLALVFVLGTALGGVLDYAFAHRSYADNVPVQLTVEQRRAQKREQLVREVGLTAQQQAQVIAILDEAQGEYKAIHAVSDPQ
Ga0126377_111793341	3300010362	Tropical Forest Soil	MSEPTVQQKATFWLALVFVLGTALGAVLGYAFAHRSYAANAPTQLTAEQRRAQKREQLTREVGLTPEQQTQVIAILDEAQGEYKAIHAVADPQVDA
Ga0126381_1038162281	3300010376	Tropical Forest Soil	MSEPTVQQKATFWLALVFVLGTALGAVLGYAFAHRSYAAAPTQLTAEQRRAQKREQLA
Ga0137363_111132352	3300012202	Vadose Zone Soil	MTESTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPTVLSAEARRAQRKERLIKDVGLNPNQQQQVSAILDHAQGEYKAVHTVMDPQIEAVR
Ga0137362_108991301	3300012205	Vadose Zone Soil	MTEPSIRQKATLWLAIVFVLGAALGGVLGYAFAHRGYAAEPAVLSAQARRALKRERLTQA
Ga0137362_115167512	3300012205	Vadose Zone Soil	MTESTIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYASEPTVLSPEARRAQRREKLAHDVGLNPDQQKQIGEIL
Ga0137362_116638192	3300012205	Vadose Zone Soil	MTEPTIRQRATLWLAIVFILGAALGGVLGYAFAHHSYAAEPSVLSAEARRAQRKEKLTKDVGLDPDQQKQVSAILDQAQGEYKAVHAVMDPQIEAVRQKTREKI
Ga0137379_107310322	3300012209	Vadose Zone Soil	MTESTIRQKASLWLAIVFILDAALGGVLGYAFAHRSYAAEPSVLSAEARRAQRKERLIKDVGLNPDQQQQVSAILDQAQGDYKAVHTVMDPQIEAVRQK
Ga0137359_117502472	3300012923	Vadose Zone Soil	MTEPNIRQKATLWLATVFVLGAALGGVLGYAFAHRSYAAEPSVMTAEARRAQKREQLKRDVGLTPDQQKQVAAILDQAQVEYKAVHDVMEPQIDAIREK
Ga0137419_107019461	3300012925	Vadose Zone Soil	MTESTIRQKASLWLAIVFILGAALGGVVGYAFAHRSYAAEPSVLSAEARRAQRKERLTKDVGLNPD
Ga0137407_124346812	3300012930	Vadose Zone Soil	MTEANIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYAAERTVMTAEARRAQKREQLKR
Ga0164309_105730262	3300012984	Soil	MTEPTVRQKATLWLAIVFVLGAALGGVIGYAFAHHSYASERTLLSADAKRAQRREQLTREVQLTPDQQKQVVAILDQ
Ga0163162_115142592	3300013306	Switchgrass Rhizosphere	MTGPTVQQKATFWLALVFALGTALGLVLGYAFAHRSYASAVPAQLTAEQRRAQKREQLAREV
Ga0157375_124736162	3300013308	Miscanthus Rhizosphere	MTEPTVQQKATFWLALVFVLGTALGGFLGYAFAHRSYAASGPAQLTAEQRRAQKREQLAREVGLTPAQQAQVTAILDEAQGEYKAIHAVSDPQVD
Ga0132258_107303071	3300015371	Arabidopsis Rhizosphere	MTGPSVQQKATFWLALVFVMGTALGLVLGYAFAHRSYAAAVPAQLTAEQRRAQKREQLAREVGLTADQQAQVAAILDE
Ga0132255_1010893893	3300015374	Arabidopsis Rhizosphere	MTGPSVQQKATFWLALVFVMGTALGLVLGYAFAHRSYAAAVPAQLTAEQRRAQKREQ
Ga0132255_1011046201	3300015374	Arabidopsis Rhizosphere	MTEHTVQQKATFWLALVFVVGTALGAVLGYAFAHRSYAAAAPTQLTAEQRRAQKREQLSREVALTAEQQNQVNA
Ga0132255_1020284983	3300015374	Arabidopsis Rhizosphere	MTEPTVQQKATFWLALVFGLGTALGGFLGYAFAHRSYAAAAPAQLTAEQRRAQKREQLAREVGLTSAQQAQVTG
Ga0182041_114556021	3300016294	Soil	MTAPTVQQKATLWLAIVFVLGAALGGVLGYAFAHRTYASAPPVMTAEAKRQERRERMTRDVGLNAEQQKQVKAILDQSQVEYKALHAVMDPQIEAVRQKTR
Ga0182041_120567002	3300016294	Soil	MSEPTVRQKASLWLAVIFLLGIALGGVLGYAFAHRSYAAPPAQLTAEQRRAQKREQLAREVGLTAEQQSQIGAILDQTQLEYKAIHAVSDPQ
Ga0182035_104877243	3300016341	Soil	MSEPTVQQKASLWLAVIFLLGIGLGGVLGYAFAHRSYAAAPGQLTAEQRRAQKREQLAREVGLNP
Ga0182035_117276722	3300016341	Soil	MSEPTVRQKASLWLAVIFLLGIALGGVLGYAFAHRSYAAPPAQLTAEQRRAQKREQLAREVGLNAEQQSQIAAILDQAQTEYRAI
Ga0182038_119967201	3300016445	Soil	MTAPTVQQKATLWLAIVFVLGAALGGVLGYAFAHRTYASAPPVMTAEAKRQERRERMTRDVGLNAEQQKQVKAILEQSQVEYKALHAVMDPQI
Ga0193724_10407581	3300020062	Soil	MTESAIRQKASLWLAIVFILGAGLGGVLGYAFAHRSYAAEPSVLSAEARRAQRKEKLTKDVRLNPDQQRQVSAILDQAQGEYKAVHTVMD
Ga0179590_11031541	3300020140	Vadose Zone Soil	MTEPSIRQKATLWLAIVFVLGAALGGVLGYAFAHRGYAAEPAVLSAQARRAQKREKLIQAVGLSSDQQK
Ga0210403_100732091	3300020580	Soil	MTEPTVQQKATLWLAIVFVLGSALGGVFGYYFAHRSYASEHTVLSAEARRAQRREKLTREVELTPDQQKQVIAILDQSQVEYKAIH
Ga0210402_115133301	3300021478	Soil	MSAPTVQQKATLWLAIVFVLGAALGGVLGFAFAHHSSAAPKAISTEARRAQRREQLIREVGLDAEQQKQVI
Ga0126371_114562871	3300021560	Tropical Forest Soil	MNEPTVQQKASLWLALIFLLGIALGGVLGYAFAHRSYAAPPAQLTAEQRRAQKREQLAREVGLNAEQQSQIAAILDQAQTEYRAIHAVSDPQI
Ga0126371_128849602	3300021560	Tropical Forest Soil	MKMSEATVQQKASLWLAVVFVLGIALGGILGYAFAHRSYAAAPQMTADERRAQKRARLVEEVGLTAEQKTQIFAILDQAQEENRAIHVTTDPQFDAVRQKAREKIR
Ga0242654_101083501	3300022726	Soil	MTEPTIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYASEPTVLSAEARRAQRKEKLTHDVGLNPDQQKQV
Ga0247670_10323073	3300024283	Soil	MTETTVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAPPTQLTVEQRRAQKREQLVRD
Ga0247678_10472131	3300024325	Soil	MTETTVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAPPTQLTVEQRRAQKREQLVRDVGLT
Ga0207663_108355692	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MTGSTIRQKATLWLAIVFVLGAALGGVLGYGFAHRTYASAPTLTAEARRAQRRAQMTREVNLNAEQQKQVGAILDQAQNEYKAVHDVMDPQI
Ga0207646_105276571	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTEPSIRQKATLWLAIVFVLGAALGGLLGYAFAHRGYAAEPAVLSAQARHAQKREKLTRAVGLSSDQ
Ga0209799_11033502	3300027654	Tropical Forest Soil	MTAPNVQQKATIWLALVFVLGIALGAVLGYAFAHRSYAAAVPAQPTADQRRAQKREQLTREVGLTPDQQTQVIAILDQAQNEYKA
Ga0209580_102641631	3300027842	Surface Soil	MSEPTVQQKASLWLAVVFILGAALGGVLGYAFAHRSYAAAPSQLTAEQRRAQKRSQLVEQVGLTTDQQTQVIAILDQ
Ga0268266_123423091	3300028379	Switchgrass Rhizosphere	MTGPTVQQKATFWLALVFVLGTALGAVLGYAFAHRSYAATSPTQLTAEQRRTQKREQLAREVALTTEQLSQVNAILDE
Ga0075405_108554131	3300030847	Soil	MTEPTIRQKATLWLALVFVLGAALGGVLGYAFAHRSYASEPTVLSAEARRAQRKEKLTHDVGLNPDQQKQ
Ga0138296_10877721	3300030923	Soil	MTESTIRQKASLWLAIVFILGAALGGVLGYAAFAHRSYAAEPSVLSAEARRAQRKEKLTKDVGLNS
Ga0138296_17998531	3300030923	Soil	MTESTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLSAEARRAQRKEKLTKDVGLDADQQKQ
Ga0138301_17381712	3300031022	Soil	MTEPSIRQKATLWLAIVFVLGAALGGVLGYAFAHRGYAAEPAVLSAQARRAQKREKLTQAVGLSSEQQKKKRNKK
Ga0073998_115974181	3300031023	Soil	MTESTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLSAEARRAQRKEKLTKD
Ga0170834_1063780772	3300031057	Forest Soil	MTESTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLSAEARRAQRKEKLTKDVGLNSDQQEQVSAILDQAQGDYKAVHTVMDPQIEAVRQKTREK
Ga0170834_1138412901	3300031057	Forest Soil	MTKMTEPTVQQKATLWLAIVFVLGAALGGVFGYYFAHRSYASERIVLSPEARRAQRREKLTRDVQLTPHQQKQVIAILDHSQIE
Ga0170823_114862011	3300031128	Forest Soil	MTEPSIRQKATLWLAIVFVLGAALGGVLGYAFAHRGYAAEPAVLSAQAKRAQKREKLTQAVGLSSDQQKRVADILDQ
Ga0170824_1128433721	3300031231	Forest Soil	MTETTVQQKATLWLALVFVLGAALGGVFGYYFAHRSYASERTVLSAEARRAQRREKLTREVQLTPDQQKQVIA
Ga0170824_1152460931	3300031231	Forest Soil	MTESTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLSAEARRAQRKEKLTKDVGLNSDQQEQVSAILDQAQGDYKAVHTVMD
Ga0170824_1193045461	3300031231	Forest Soil	MTEPTIRQKATLWLALVFVLGAALGGVLGYAFAHRSYASEPTVLSAEARRAQRKEKLTHDVGLNPDQQQQAGAILDQAQGE
Ga0170820_147298392	3300031446	Forest Soil	MTEPTIRQKATLWLALVFVLGAALGGVLGYAFAHRSYASEPTVLSAEARRAQRKEKLTHDVGLN
Ga0170820_150379412	3300031446	Forest Soil	MTESSIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLSAEARRAQRKERLTKDVGLNPDQQQQVSAILDQAQGDYKAVHAVMDPQIEAVRQRTREKRKKS
Ga0170820_166531393	3300031446	Forest Soil	MTESTIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYASEPTVLSPEARRAQRREKLAHDVG
Ga0170819_139335301	3300031469	Forest Soil	MTGSTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLNAEAKRAQRKERLSKDVGLNPDQQQQ
Ga0170819_174637622	3300031469	Forest Soil	MTEPNIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYASEPTVLSPEARRAQRREKLTHDVGLNPDQQKQAGA
Ga0170818_1083226401	3300031474	Forest Soil	MTEPTIRQKATLWLALVFVLGAALGGVLGYAFAHRSYASEPTVLSPEARRAQRREKLTHDVGLNPDQQQQAG
Ga0170818_1105825112	3300031474	Forest Soil	MTGSTIRQKASLWLAIVFILGAALGGVLGYAFAHRSYAAEPSVLNAEAKRAQRKERLSKDVGLNPDQQQQVSAILDQAQGDYKAVHAVMDPQIEAVRQRTREKRKKS
Ga0318541_108692882	3300031545	Soil	MTAPTVQQKATLWLAIVFVLGAALGGVLGYAFAHRTYASAPPVMTAEAKRQERRERMTRDVGLNAEQQKQ
Ga0318560_101573453	3300031682	Soil	MTAPSVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQKQVIAILD
Ga0307477_108796632	3300031753	Hardwood Forest Soil	MTTEPTIRQKATLWLAIVFVLGAALGGVLGYAFAHRSYAAEPAVLSAEARRAQRKEKLTHDVGLSPVQQEQVAKILDQAQGEYQAVHKVTDPQIEAVRQKTR
Ga0318509_104565011	3300031768	Soil	MTAPSVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQK
Ga0318543_102296131	3300031777	Soil	MTAPSVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQKQVIAILDEA
Ga0307473_101347893	3300031820	Hardwood Forest Soil	MSAPTVQQKATLWLAIVFVLGAALGGVLGFAFAHHSSAAPKAISSEARRAQRREQLIREV
Ga0307473_115574202	3300031820	Hardwood Forest Soil	MTGPSVQQKATFWLALVFALGTALGLVLGYAFAHRSYASAVPAQLTAEQRRAQKREQLAREVGLTADQQAQV
Ga0318564_104599371	3300031831	Soil	MTAPSVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQK
Ga0310917_110287572	3300031833	Soil	MTAPSVQQKATLWLALVFVLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQKQVIAI
Ga0310910_108755361	3300031946	Soil	MSEPTVQQKASLWLAVIFLLGIALGGVFGYAFAHRSYAAAPGQLTAEQRRAQKREQLARE
Ga0310910_113372512	3300031946	Soil	MTAPTVQQKATLWLAIVFVLGAALGGVLGYAFAHRTYASAPPVMTAEAKRQERRERMTRDVGLNAEQQKQV
Ga0306922_111399801	3300032001	Soil	MNEPTVQQKASLWLALIFLLGIALGGVLGYAFAHRSYAAPPAQLTAEQRRAQKREQLAREVGLNAEQQSQIAAILDQAQTEYRAIHAVSDPQID
Ga0318532_101615841	3300032051	Soil	MTAPTVQQKATLWLAIVFVLGAALGGVLGYAFAHRTYASAPPVMTAEAKRQERRERMTRDVGLNAEQQKQVKAILDQSQVEY
Ga0307470_102014761	3300032174	Hardwood Forest Soil	MTEPTVQQKATLWLAIVFVLGAALGGVFGYYFAYRSYASERTVLSPEARRAQRREKL
Ga0307470_105225521	3300032174	Hardwood Forest Soil	MTEPSIRQKATLWLAIVFVLGAALGGVLGYAFAHRGYAAEPAVLSAQARRAQKREKLTQAVGLSSDQQKRVAD
Ga0307471_1003000781	3300032180	Hardwood Forest Soil	MTEPTVQQKATFWLALVFVLGTALGGFLGYAFAHRSYAASGPAQLTAEQRRAQKREQLAREVGLTPAQQAQVTAILDQAQGEYKAIHAVSDPQADAVRLMSRDKIRQILSADQKPKF
Ga0307471_1043334331	3300032180	Hardwood Forest Soil	MSESTIRQKATLWLAIIFVLGAALGGIFGYALAHHTYAAAPIVLTAEAKRAQRREQMTREVNLNAEQQKQVGAILDQAQTEYKAVHDVMDPQI
Ga0307472_1012492022	3300032205	Hardwood Forest Soil	MTGPTVQQKATFWLALVFALGTALGLVLGYAFAHRSYASAVPAQLTAEQRRAQKREQLAR
Ga0307510_104441132	3300033180	Ectomycorrhiza	MTEPTVRQKAGLWLGIVFVLGAALGGVLGYAFAHRSYASEHTTLTAEARRAQRREQLTRDVQLTPDQQKQVAAILDGAQVEYKAVHDVMDPQIEAVRQK
Ga0318519_101451743	3300033290	Soil	MTAPSVQQKATLWLALVFGLGTALGAVLGYAFAHRSYAAAPAQLTAEQRRAQKREQLTREVGLTAEQQKQVIAILDEAQGEY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087569

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences