Metagenome / Metatranscriptome Family F087567

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087567
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	43 residues
Representative Sequence	MATKEYSPMEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Number of Associated Samples	95
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.82 %
% of genes near scaffold ends (potentially truncated)	48.18 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (28.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF10503	Esterase_PHB	4.55
PF00884	Sulfatase	2.73
PF12244	DUF3606	2.73
PF13545	HTH_Crp_2	1.82
PF00011	HSP20	1.82
PF00239	Resolvase	1.82
PF00872	Transposase_mut	1.82
PF11306	DUF3108	0.91
PF07536	HWE_HK	0.91
PF00166	Cpn10	0.91
PF00916	Sulfate_transp	0.91
PF06078	DUF937	0.91
PF01346	FKBP_N	0.91
PF04392	ABC_sub_bind	0.91
PF13546	DDE_5	0.91
PF00912	Transgly	0.91
PF01548	DEDD_Tnp_IS110	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.82
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.82
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.82
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.91
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.91
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.91
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.91
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.91
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.91
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.91
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.91
COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.27 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.27 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.27 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.09 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.64 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.55 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.73 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.73 %
Dongia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia	0.91 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.91 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.73 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
Dongia mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → Dongia mobilis	0.91 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.91 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.09 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.73 %
Bradyrhizobium sp. 190	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 190	0.91 %
Dongia mobilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → Dongia mobilis	0.91 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.91 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig567402	Not Available	558	Open in IMG/M
2166559005\|cont_contig101682	Not Available	567	Open in IMG/M
2170459002\|F0B48LX02GJN3Z	Not Available	540	Open in IMG/M
2170459003\|FZ032L002HBB3Y	Not Available	514	Open in IMG/M
3300000156\|NODE_c0732167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8401	Open in IMG/M
3300001545\|JGI12630J15595_10086625	Not Available	615	Open in IMG/M
3300001867\|JGI12627J18819_10085944	Not Available	1304	Open in IMG/M
3300002245\|JGIcombinedJ26739_100229107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1749	Open in IMG/M
3300002245\|JGIcombinedJ26739_100339146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1385	Open in IMG/M
3300002906\|JGI25614J43888_10004851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4294	Open in IMG/M
3300004114\|Ga0062593_100830484	Not Available	924	Open in IMG/M
3300004463\|Ga0063356_106066107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	518	Open in IMG/M
3300004480\|Ga0062592_101036732	Not Available	753	Open in IMG/M
3300005146\|Ga0066817_1003864	All Organisms → cellular organisms → Bacteria → Proteobacteria	986	Open in IMG/M
3300005147\|Ga0066821_1003157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300005180\|Ga0066685_10968893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300005356\|Ga0070674_100088630	Not Available	2227	Open in IMG/M
3300005434\|Ga0070709_10260114	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005436\|Ga0070713_100928591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300005440\|Ga0070705_101083441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300005445\|Ga0070708_100113134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2496	Open in IMG/M
3300005467\|Ga0070706_100771541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	890	Open in IMG/M
3300005545\|Ga0070695_101767892	Not Available	518	Open in IMG/M
3300005564\|Ga0070664_101785355	Not Available	583	Open in IMG/M
3300005615\|Ga0070702_101184978	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300005718\|Ga0068866_10627890	Not Available	729	Open in IMG/M
3300005841\|Ga0068863_100620198	Not Available	1071	Open in IMG/M
3300006028\|Ga0070717_10677596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	936	Open in IMG/M
3300006028\|Ga0070717_12160557	Not Available	500	Open in IMG/M
3300006038\|Ga0075365_10201736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1393	Open in IMG/M
3300006038\|Ga0075365_10731839	Not Available	699	Open in IMG/M
3300006049\|Ga0075417_10447508	Not Available	644	Open in IMG/M
3300006175\|Ga0070712_100393933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1142	Open in IMG/M
3300006576\|Ga0074047_11902926	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006794\|Ga0066658_10798972	Not Available	532	Open in IMG/M
3300006844\|Ga0075428_100389211	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300006904\|Ga0075424_100755815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1037	Open in IMG/M
3300009100\|Ga0075418_10533645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1261	Open in IMG/M
3300009100\|Ga0075418_11036488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
3300009100\|Ga0075418_12207912	Not Available	600	Open in IMG/M
3300009143\|Ga0099792_10914415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300009147\|Ga0114129_12764594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300009176\|Ga0105242_12786341	Not Available	539	Open in IMG/M
3300009551\|Ga0105238_11763819	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300009840\|Ga0126313_10604627	Not Available	884	Open in IMG/M
3300010373\|Ga0134128_11053751	Not Available	898	Open in IMG/M
3300010399\|Ga0134127_10356322	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300010403\|Ga0134123_13649143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	500	Open in IMG/M
3300011120\|Ga0150983_12539512	Not Available	538	Open in IMG/M
3300012022\|Ga0120191_10160235	Not Available	521	Open in IMG/M
3300012189\|Ga0137388_10015339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5591	Open in IMG/M
3300012205\|Ga0137362_11184881	Not Available	648	Open in IMG/M
3300012285\|Ga0137370_10967536	Not Available	525	Open in IMG/M
3300012906\|Ga0157295_10039860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1067	Open in IMG/M
3300012923\|Ga0137359_10101206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2545	Open in IMG/M
3300012941\|Ga0162652_100068481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300012951\|Ga0164300_10028851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2015	Open in IMG/M
3300012955\|Ga0164298_10356152	Not Available	929	Open in IMG/M
3300012955\|Ga0164298_10640611	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300012955\|Ga0164298_10973391	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300012984\|Ga0164309_10096580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1854	Open in IMG/M
3300012985\|Ga0164308_10761505	Not Available	841	Open in IMG/M
3300012985\|Ga0164308_12181685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Dongia → Dongia mobilis	516	Open in IMG/M
3300012988\|Ga0164306_12023950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300013297\|Ga0157378_10530740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1180	Open in IMG/M
3300013306\|Ga0163162_10953858	Not Available	969	Open in IMG/M
3300015077\|Ga0173483_10755985	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300015371\|Ga0132258_10051700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9405	Open in IMG/M
3300015374\|Ga0132255_100730129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1473	Open in IMG/M
3300015374\|Ga0132255_101156982	Not Available	1164	Open in IMG/M
3300015374\|Ga0132255_101319919	Not Available	1088	Open in IMG/M
3300016387\|Ga0182040_11676018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300016422\|Ga0182039_10795153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	839	Open in IMG/M
3300018028\|Ga0184608_10054716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1581	Open in IMG/M
3300018031\|Ga0184634_10338598	Not Available	690	Open in IMG/M
3300018053\|Ga0184626_10400788	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300018054\|Ga0184621_10038991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1550	Open in IMG/M
3300018081\|Ga0184625_10196007	Not Available	1058	Open in IMG/M
3300018476\|Ga0190274_10981109	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300018476\|Ga0190274_11767442	Not Available	713	Open in IMG/M
3300019263\|Ga0184647_1065848	Not Available	561	Open in IMG/M
3300019361\|Ga0173482_10106562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1027	Open in IMG/M
3300019361\|Ga0173482_10171282	Not Available	865	Open in IMG/M
3300020016\|Ga0193696_1037597	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300020199\|Ga0179592_10299189	Not Available	715	Open in IMG/M
3300020581\|Ga0210399_10593833	Not Available	916	Open in IMG/M
3300021168\|Ga0210406_10155740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1915	Open in IMG/M
3300021478\|Ga0210402_10548138	Not Available	1073	Open in IMG/M
3300025915\|Ga0207693_10738448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	761	Open in IMG/M
3300025929\|Ga0207664_10421828	Not Available	1188	Open in IMG/M
3300025931\|Ga0207644_10195660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1592	Open in IMG/M
3300025931\|Ga0207644_10341872	Not Available	1214	Open in IMG/M
3300025938\|Ga0207704_10288345	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300026693\|Ga0208709_104965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300027603\|Ga0209331_1032972	Not Available	1331	Open in IMG/M
3300027635\|Ga0209625_1124446	Not Available	578	Open in IMG/M
3300027655\|Ga0209388_1106930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	801	Open in IMG/M
3300027873\|Ga0209814_10533240	Not Available	521	Open in IMG/M
3300027909\|Ga0209382_10073807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4029	Open in IMG/M
3300027909\|Ga0209382_11603847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 190	643	Open in IMG/M
3300028047\|Ga0209526_10575677	Not Available	724	Open in IMG/M
3300028047\|Ga0209526_10681030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300028768\|Ga0307280_10420247	Not Available	501	Open in IMG/M
3300028784\|Ga0307282_10209286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	933	Open in IMG/M
3300028787\|Ga0307323_10275269	Not Available	606	Open in IMG/M
3300028875\|Ga0307289_10271723	Not Available	697	Open in IMG/M
3300031720\|Ga0307469_10224957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1487	Open in IMG/M
3300031740\|Ga0307468_100323862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1134	Open in IMG/M
3300032174\|Ga0307470_10026505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2698	Open in IMG/M
3300032180\|Ga0307471_103917060	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.73%
Host-Associated	Host-Associated	25.45%
Engineered	Engineered	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.27%
Plants	Host-Associated → Plants	25.45%
Aquatic	Environmental → Aquatic	5.45%
Solid Waste	Engineered → Solid Waste	0.91%
Modeled	Engineered → Modeled	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.18%
Sediment	Environmental → Aquatic → Sediment	4.55%
Roots	Host-Associated → Plants → Roots	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.91%
Grass	Engineered → Solid Waste → Grass	0.91%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.36%
Loam	Environmental → Terrestrial → Soil → Loam	20.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.91%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.91%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.91%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026693	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN595 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_05466740	2124908045	Soil	MATKEHKPFGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK
cont_0681.00006110	2166559005	Simulated	MATKEYSPTEPKARKAIKFSDSLVEVAYVCESCGTEIKRT
E1_04650450	2170459002	Grass Soil	MATKEYSPTEPKARKAIKFSDSLVEVAYVCESCGTEINVR
E4A_08747840	2170459003	Grass Soil	MATKEYNPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK
NODE_073216711	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MVTKEYRPLGPKASKAIKFTDWLVEVAYVCESCGTEIKRTIREK*
JGI12630J15595_100866251	3300001545	Forest Soil	MATKEYXPMEPKARKAIKFTDSLVEVVYLCESCGTEIKRTIREN*
JGI12627J18819_100859441	3300001867	Forest Soil	MATKEYSPTEPKARKAIKFSDSLVEVAYVCESCGTETKRTIREK*
JGIcombinedJ26739_1002291072	3300002245	Forest Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREN*
JGIcombinedJ26739_1003391463	3300002245	Forest Soil	MATKEHKPMGPEQCKAIRFTDSLVEVAYVCESCGTEIKRTIRK*
JGI25614J43888_100048515	3300002906	Grasslands Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIRET*
Ga0062593_1008304841	3300004114	Soil	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKRTIREN*
Ga0063356_1060661072	3300004463	Arabidopsis Thaliana Rhizosphere	MATKEYSPTEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0062592_1010367322	3300004480	Soil	MATKEHKPMEPKARKAIKFSDSLVEVVYICESCGTEIKRTIREK*
Ga0066817_10038642	3300005146	Soil	MATKEHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0066821_10031573	3300005147	Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK*
Ga0066685_109688931	3300005180	Soil	KEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK*
Ga0070674_1000886303	3300005356	Miscanthus Rhizosphere	MATKEHKPLGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0070709_102601142	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEYSPTEPKARKAVKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0070713_1009285913	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RMATKEHKPMGPEQRKAIRFTDSLVEVAYVCESCGTEIKRTIRK*
Ga0070705_1010834411	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEYNPTEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0070708_1001131346	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEHKPMGPEQRKAIRFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0070706_1007715411	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEHKPMGPEQRKAIRFTDSLVEVAYVCESCGTEIKRTIRK*
Ga0070695_1017678921	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEYSPMEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0070664_1017853552	3300005564	Corn Rhizosphere	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGT
Ga0070702_1011849781	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRT
Ga0068866_106278901	3300005718	Miscanthus Rhizosphere	MATKEHKPVGSKQRKAIKFSDSLVEIAYVCESCGTEIKRT
Ga0068863_1006201982	3300005841	Switchgrass Rhizosphere	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKRTILEN*
Ga0070717_106775961	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KEHKPMGPEQRKAIRFTDSLVEVAYVCESCGTEIKRTIRK*
Ga0070717_121605571	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	EPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0075365_102017362	3300006038	Populus Endosphere	ICPRCRRRMVTKEYRPRGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0075365_107318392	3300006038	Populus Endosphere	MATKEHKPFGPKQRKAIKFSDGLVEVAYVCESCGTEIKRTIREK*
Ga0075417_104475081	3300006049	Populus Rhizosphere	MATKEHKPMGPKQRKAIRFTDSLVEVAYVCESCGTEIKRTIREN*
Ga0070712_1003939333	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MATKEYSPTEPKARKAIKFSDTLVEVAYVCESCGTEIKRTIREK*
Ga0074047_119029262	3300006576	Soil	MATKEHKPVGPKQRKAIKFSDSLVDVAYVCESCGTEIKRTIREK*
Ga0066658_107989722	3300006794	Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTE
Ga0075428_1003892112	3300006844	Populus Rhizosphere	MVTKEYRPRGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0075424_1007558153	3300006904	Populus Rhizosphere	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREQ*
Ga0075418_105336452	3300009100	Populus Rhizosphere	MVTKEYRPLGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0075418_110364882	3300009100	Populus Rhizosphere	MGPKQRKAIRFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0075418_122079121	3300009100	Populus Rhizosphere	MVTKEYRPRGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIR
Ga0099792_109144151	3300009143	Vadose Zone Soil	KEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIRET*
Ga0114129_127645942	3300009147	Populus Rhizosphere	MVTKEYRPMGPKARKAIKFTDSLVEVAYVCENCGAEIKRTIRES*
Ga0105242_127863411	3300009176	Miscanthus Rhizosphere	PVGPNQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0105238_117638191	3300009551	Corn Rhizosphere	MATKEHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIK
Ga0126313_106046271	3300009840	Serpentine Soil	MATKDHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0134128_110537513	3300010373	Terrestrial Soil	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKHTIREN*
Ga0134127_103563221	3300010399	Terrestrial Soil	MATKEHKPVGSKQRKAIKFSDSLVEIAYVCESCGTEIKRTIREK*
Ga0134123_136491432	3300010403	Terrestrial Soil	EPKARKAVKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0150983_125395121	3300011120	Forest Soil	MATKEYSPMEPKARKAIKFSDSLVEVAYVCESCGTE
Ga0120191_101602352	3300012022	Terrestrial	MVTKEYRPRGPIARKAIKFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0137388_1001533910	3300012189	Vadose Zone Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIRE
Ga0137362_111848811	3300012205	Vadose Zone Soil	MATKEHKPMGPEQHKAIRFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0137370_109675361	3300012285	Vadose Zone Soil	MVTKEYRPGPETSKAITFTDSLVEVAYVCESCGTEIKRTMREK*
Ga0157295_100398602	3300012906	Soil	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKRTIREK*
Ga0137359_101012061	3300012923	Vadose Zone Soil	EPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK*
Ga0162652_1000684811	3300012941	Soil	RCRRRMATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK*
Ga0164300_100288514	3300012951	Soil	MATKEYSPTEPKARKAIKFSDSLVEVAYVCESCGTEI
Ga0164298_103561521	3300012955	Soil	MATKEYKPMGPKARKAIKFTDSLVEVVYICESCGTEIK
Ga0164298_106406112	3300012955	Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREKARVLCNELA*
Ga0164298_109733911	3300012955	Soil	MATKEHRPVGPKQRKAIKFSDSLVEVAYVCDSCGTEIKRTLRERWA*
Ga0164309_100965802	3300012984	Soil	MATKEYTPTEPKARKAIKFSDSLVEVAYVCESCGTEIKR
Ga0164308_107615052	3300012985	Soil	ATKEYSPMEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0164308_121816851	3300012985	Soil	MATKEYKPMEPKARKAIKFSDSLVEVVYICESCGTEIKRTIREK*
Ga0164306_120239502	3300012988	Soil	MATKEYKPMEPKARKAIKFSDSLVEVVYTCESCGTEIKRT
Ga0157378_105307401	3300013297	Miscanthus Rhizosphere	RMATKEYNPTEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREE*
Ga0163162_109538581	3300013306	Switchgrass Rhizosphere	MATTEHKPVGPKQRKAIKFSDGLVEVAYVCESCGTEIKRTIREK
Ga0173483_107559852	3300015077	Soil	RMATKEHKPLGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK*
Ga0132258_1005170010	3300015371	Arabidopsis Rhizosphere	MVTKEYRPRGPKARKDIKFTDSLVEVAYVCENCGTEIKRTIRET*
Ga0132255_1007301291	3300015374	Arabidopsis Rhizosphere	MATKEHKPMGPKQRKAIRFTDSLVEVAYVCESCGTEIKRTIREK*
Ga0132255_1011569821	3300015374	Arabidopsis Rhizosphere	ATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKRTILEN*
Ga0132255_1013199193	3300015374	Arabidopsis Rhizosphere	MVTKEYRPRGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIRGK*
Ga0182040_116760181	3300016387	Soil	TKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK
Ga0182039_107951531	3300016422	Soil	WPRCRRRMATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK
Ga0184608_100547162	3300018028	Groundwater Sediment	MATKEYNPMGPKQRKAIKFTDRLVEVAYVCESCGTEIKRTIREK
Ga0184634_103385982	3300018031	Groundwater Sediment	PVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0184626_104007882	3300018053	Groundwater Sediment	PRCRRRMATKEHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0184621_100389912	3300018054	Groundwater Sediment	MATKEHNPMGPKQRKVIKFTDRLVEVAYVCESCGTEIKRTIREK
Ga0184625_101960073	3300018081	Groundwater Sediment	CPRCRRRMATKEYNPMGPKQRKAIKFTDRLVEVAYVCESCGTEIKRTIREK
Ga0190274_109811091	3300018476	Soil	MATKDHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0190274_117674422	3300018476	Soil	MATKEHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKR
Ga0184647_10658483	3300019263	Groundwater Sediment	MATKEHRPTGPKARKAIKFSDSLVEVAYICDSCGTEIK
Ga0173482_101065621	3300019361	Soil	MATKEHKPMEPKARKAIKFSDSLVEVVYICESCGT
Ga0173482_101712821	3300019361	Soil	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKRTIREN
Ga0193696_10375973	3300020016	Soil	MATKEHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0179592_102991891	3300020199	Vadose Zone Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIRET
Ga0210399_105938331	3300020581	Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKR
Ga0210406_101557403	3300021168	Soil	MATKEYSPMEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0210402_105481382	3300021478	Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYLCESCGTEIKRTIREN
Ga0207693_107384482	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RRRMATKEYSPTEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0207664_104218281	3300025929	Agricultural Soil	CLACPTEPKARKAVKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0207644_101956601	3300025931	Switchgrass Rhizosphere	MATKEYKPMEPKARKPIKFTDSLVEVVYICESCGTEIKRTILEN
Ga0207644_103418722	3300025931	Switchgrass Rhizosphere	RCRRRMATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREK
Ga0207704_102883452	3300025938	Miscanthus Rhizosphere	EHKPVGPKQRKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0208709_1049652	3300026693	Soil	RMATKEHKPMGPEQRKAIRFTDSLVEVAYVCESCGTEIKRTIREK
Ga0209331_10329722	3300027603	Forest Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREN
Ga0209625_11244462	3300027635	Forest Soil	MATKEYNPMEPKARKAIKFTDSLVEVVYLCESCGTEIKRTIREK
Ga0209388_11069303	3300027655	Vadose Zone Soil	KPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIRET
Ga0209814_105332401	3300027873	Populus Rhizosphere	MATKEHKPMGPKQRKAIRFTDSLVEVAYVCESCGTEIKRTIREN
Ga0209382_100738074	3300027909	Populus Rhizosphere	MVTKEYRPLGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIREK
Ga0209382_116038472	3300027909	Populus Rhizosphere	ATKEHKPMGPKQRKAIRFTDSLVEVAYVCESCGTEIKRTIRESRPP
Ga0209526_105756773	3300028047	Forest Soil	MATKEHKPMGPEQRKAIRFTDSLVEVAYVCESCGTEIK
Ga0209526_106810302	3300028047	Forest Soil	MATKEHKPMGPEQCKAIRFTDSLVEVAYVCESCGTEIKRTIRK
Ga0307280_104202471	3300028768	Soil	MATKEYSPTEPKARKAIKFSDTLVEVAYVCESCGTEIKRTIRE
Ga0307282_102092861	3300028784	Soil	KEYSPTEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0307323_102752691	3300028787	Soil	MATKEYSPTEPKARKAIKFSDTLVEVAYVCESCGTEIKRTIREK
Ga0307289_102717231	3300028875	Soil	MATKEHRPTGPKARKAIKFSDSLVEVAYVCDSCGTEIKRTLRER
Ga0307469_102249571	3300031720	Hardwood Forest Soil	MVTKEYRPRGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIREK
Ga0307468_1003238621	3300031740	Hardwood Forest Soil	VICPRCRRRMVTKEYRPRGPKARKAIKFTDSLVEVAYVCESCGTEIKRTIREK
Ga0307470_100265053	3300032174	Hardwood Forest Soil	MEPKARKAIKFSDSLVEVAYVCESCGTEIKRTIREK
Ga0307471_1039170601	3300032180	Hardwood Forest Soil	MATKEYKPMEPKARKAIKFTDSLVEVVYICESCGTEIKRTIREQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087567

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences