Metagenome Family F087550

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087550
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MERPGAKGTLVHFRCTNPAHVRPAAQRSDTLTLFEGLWAYCPFDVRAGEHEWAPTGGVTMDTLRKEAG
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.45 %
% of genes near scaffold ends (potentially truncated)	14.55 %
% of genes from short scaffolds (< 2000 bps)	74.55 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost (23.636 % of family members)
Environment Ontology (ENVO)	Unclassified (28.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 27.08% Coil/Unstructured: 60.42%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.82
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.82
Powered by PDBe Molstar

Structural matches with PDB biological assemblies

PDB ID	Structure Name	Biol. Assembly	TM-score
1f5n	HUMAN GUANYLATE BINDING PROTEIN-1 IN COMPLEX WITH THE GTP ANALOGUE, GMPPNP.	1	0.50547
7e58	INTERFERON-INDUCIBLE ANTI-VIRAL PROTEIN 2	2	0.50227
6vkj	CRYSTAL STRUCTURE OF THE G DOMAIN OF HUMAN GUANYLATE-BINDING PROTEIN 2 (HGBP2) IN COMPLEX WITH GDP	1	0.50141

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01794	Ferric_reduct	34.55
PF04542	Sigma70_r2	20.00
PF08281	Sigma70_r4_2	11.82
PF07394	DUF1501	6.36
PF07883	Cupin_2	2.73
PF00005	ABC_tran	1.82
PF08811	DUF1800	0.91
PF02627	CMD	0.91
PF00563	EAL	0.91
PF02417	Chromate_transp	0.91
PF03795	YCII	0.91
PF01663	Phosphodiest	0.91
PF12679	ABC2_membrane_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	20.00
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	20.00
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	20.00
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	20.00
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.91
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.91
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.91
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.91
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.91
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.91
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.91
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	75.45 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	60.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14.55 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	56.36 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.18 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	56.36 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	56.36 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	56.36 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig83806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1365	Open in IMG/M
2124908041\|P3_CLC_ConsensusfromContig19841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	918	Open in IMG/M
2189573001\|GZR05M102HRDVU	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300000880\|AL20A1W_1001590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2563	Open in IMG/M
3300000880\|AL20A1W_1009830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1114	Open in IMG/M
3300000887\|AL16A1W_10046235	All Organisms → cellular organisms → Bacteria	2304	Open in IMG/M
3300001333\|A21PFW6_1209868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	985	Open in IMG/M
3300001537\|A2065W1_10009766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	607	Open in IMG/M
3300001537\|A2065W1_10071423	All Organisms → cellular organisms → Bacteria	2266	Open in IMG/M
3300001538\|A10PFW1_11004303	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300001566\|A2135W6_1017916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	892	Open in IMG/M
3300001661\|JGI12053J15887_10430185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	633	Open in IMG/M
3300001664\|P5cmW16_1015081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1480	Open in IMG/M
3300002025\|smpD1_1005311	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300002025\|smpD1_1010769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	784	Open in IMG/M
3300004114\|Ga0062593_100381109	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300004479\|Ga0062595_100198567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1238	Open in IMG/M
3300005171\|Ga0066677_10099784	All Organisms → cellular organisms → Bacteria	1536	Open in IMG/M
3300005178\|Ga0066688_10429421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	856	Open in IMG/M
3300005187\|Ga0066675_10419256	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300005345\|Ga0070692_10810424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	640	Open in IMG/M
3300005355\|Ga0070671_101031953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	721	Open in IMG/M
3300005445\|Ga0070708_100002487	All Organisms → cellular organisms → Bacteria	14229	Open in IMG/M
3300005445\|Ga0070708_100051023	All Organisms → cellular organisms → Bacteria	3664	Open in IMG/M
3300005454\|Ga0066687_10076409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1635	Open in IMG/M
3300005467\|Ga0070706_101797915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	557	Open in IMG/M
3300005468\|Ga0070707_101015883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	795	Open in IMG/M
3300005471\|Ga0070698_100000227	All Organisms → cellular organisms → Bacteria	55318	Open in IMG/M
3300005518\|Ga0070699_100009799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8290	Open in IMG/M
3300005537\|Ga0070730_10006387	All Organisms → cellular organisms → Bacteria	10083	Open in IMG/M
3300005545\|Ga0070695_100212014	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300005556\|Ga0066707_10013744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4097	Open in IMG/M
3300005557\|Ga0066704_10077623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2149	Open in IMG/M
3300005557\|Ga0066704_10188938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1391	Open in IMG/M
3300005557\|Ga0066704_10452206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	849	Open in IMG/M
3300005559\|Ga0066700_10730530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	675	Open in IMG/M
3300005561\|Ga0066699_10138951	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300005561\|Ga0066699_10648076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	757	Open in IMG/M
3300005561\|Ga0066699_11049724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	563	Open in IMG/M
3300005569\|Ga0066705_10232839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1164	Open in IMG/M
3300005576\|Ga0066708_10929309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300006032\|Ga0066696_10023064	All Organisms → cellular organisms → Bacteria	3229	Open in IMG/M
3300006175\|Ga0070712_100849724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	785	Open in IMG/M
3300006796\|Ga0066665_10531008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	960	Open in IMG/M
3300006800\|Ga0066660_10380414	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300006806\|Ga0079220_10624807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	772	Open in IMG/M
3300006903\|Ga0075426_10998155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	633	Open in IMG/M
3300006914\|Ga0075436_100061615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2592	Open in IMG/M
3300006914\|Ga0075436_100303412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1145	Open in IMG/M
3300007821\|Ga0104323_123950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1826	Open in IMG/M
3300009012\|Ga0066710_101564639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1013	Open in IMG/M
3300009137\|Ga0066709_101863395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	839	Open in IMG/M
3300009137\|Ga0066709_102100958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	781	Open in IMG/M
3300010321\|Ga0134067_10493444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	506	Open in IMG/M
3300011270\|Ga0137391_10419320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1142	Open in IMG/M
3300011270\|Ga0137391_10502051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1027	Open in IMG/M
3300011994\|Ga0120157_1005079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3923	Open in IMG/M
3300011994\|Ga0120157_1039904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1045	Open in IMG/M
3300011994\|Ga0120157_1082438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	648	Open in IMG/M
3300011996\|Ga0120156_1004789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3186	Open in IMG/M
3300011996\|Ga0120156_1013135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1668	Open in IMG/M
3300011999\|Ga0120148_1003930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4398	Open in IMG/M
3300012003\|Ga0120163_1130109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	534	Open in IMG/M
3300012010\|Ga0120118_1002683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5941	Open in IMG/M
3300012019\|Ga0120139_1037819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1130	Open in IMG/M
3300012204\|Ga0137374_10673281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	780	Open in IMG/M
3300012206\|Ga0137380_10343044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300012210\|Ga0137378_10100340	All Organisms → cellular organisms → Bacteria	2656	Open in IMG/M
3300012285\|Ga0137370_10743914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300012363\|Ga0137390_11868154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300012363\|Ga0137390_11954773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	513	Open in IMG/M
3300012532\|Ga0137373_11109240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	565	Open in IMG/M
3300012923\|Ga0137359_11084276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	685	Open in IMG/M
3300013501\|Ga0120154_1001216	All Organisms → cellular organisms → Bacteria	9573	Open in IMG/M
3300013503\|Ga0120127_10127249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	592	Open in IMG/M
3300013763\|Ga0120179_1016824	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300013768\|Ga0120155_1000398	All Organisms → cellular organisms → Bacteria	16468	Open in IMG/M
3300013772\|Ga0120158_10031138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	4073	Open in IMG/M
3300014052\|Ga0120109_1018358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1554	Open in IMG/M
3300014052\|Ga0120109_1022052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1422	Open in IMG/M
3300014823\|Ga0120170_1087158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	642	Open in IMG/M
3300015086\|Ga0167655_1021816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1084	Open in IMG/M
3300015162\|Ga0167653_1000185	All Organisms → cellular organisms → Bacteria	17909	Open in IMG/M
3300015164\|Ga0167652_1012599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1809	Open in IMG/M
3300015171\|Ga0167648_1014434	All Organisms → cellular organisms → Bacteria	1952	Open in IMG/M
3300015171\|Ga0167648_1014781	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300015192\|Ga0167646_1010628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2549	Open in IMG/M
3300015195\|Ga0167658_1001621	All Organisms → cellular organisms → Bacteria	9357	Open in IMG/M
3300015262\|Ga0182007_10123737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	867	Open in IMG/M
3300015264\|Ga0137403_11249266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	589	Open in IMG/M
3300018482\|Ga0066669_10858927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	808	Open in IMG/M
3300019877\|Ga0193722_1004499	All Organisms → cellular organisms → Bacteria	3458	Open in IMG/M
3300019999\|Ga0193718_1061645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	808	Open in IMG/M
3300020010\|Ga0193749_1090563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300021046\|Ga0215015_10020328	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300021080\|Ga0210382_10083777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1309	Open in IMG/M
3300025910\|Ga0207684_11453523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	559	Open in IMG/M
3300025911\|Ga0207654_10336069	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300025915\|Ga0207693_10051603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3227	Open in IMG/M
3300026301\|Ga0209238_1081785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1121	Open in IMG/M
3300026319\|Ga0209647_1066748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1841	Open in IMG/M
3300026323\|Ga0209472_1047113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1874	Open in IMG/M
3300026528\|Ga0209378_1263821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300026530\|Ga0209807_1040252	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2204	Open in IMG/M
3300026542\|Ga0209805_1306158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603	Open in IMG/M
3300026548\|Ga0209161_10215673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1043	Open in IMG/M
3300027857\|Ga0209166_10009389	All Organisms → cellular organisms → Bacteria	6412	Open in IMG/M
3300028819\|Ga0307296_10696981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	555	Open in IMG/M
3300028828\|Ga0307312_10336803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300031716\|Ga0310813_10013332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5392	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.55%
Host-Associated	Host-Associated	5.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.64%
Plants	Host-Associated → Plants	5.45%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.45%
Freshwater	Environmental → Aquatic → Freshwater	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.82%
Loam	Environmental → Terrestrial → Soil → Loam	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.27%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	27.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	23.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	19.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	6.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.73%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Permafrost And Active Layer Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2124908041	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3	Environmental	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300001566	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-35cm)- 6 week illumina	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001664	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembled	Environmental	Open in IMG/M
3300002025	Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007821	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-10-2 Soapdenovo	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011994	Permafrost microbial communities from Nunavut, Canada - A7_65cm_12M	Environmental	Open in IMG/M
3300011996	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M	Environmental	Open in IMG/M
3300011999	Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014052	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M	Environmental	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015086	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015192	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020010	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_03467920	2124908032	Soil	MERTGAKRTLVHFRCTNPAHARPATLRSDTLTLVEGLWAYCPFDIRVGDHDWQPTGGVTMGELRGETA
P3_CLC_02379760	2124908041	Soil	RTGGERTARMERTGAKRTLVHFRCTNPAHARPATLRSDTLTLVEGLWAYCPFDIRVGDHDWQPTGGVTMGELRGETA
FD2_07493940	2189573001	Grass Soil	HRLRGSRRMERPAGKGTLVHFRCENPAHGPDGHPSDTVTLVEGLWAYCPYDVRAGDHAWQPTGGVKMEELREAAP
AL20A1W_10015903	3300000880	Permafrost	LERPGAKGTLVHFRCTNPAHARPATQRSDTLTLFEGLWAYCPFDVRAGEHDWVPTGGVTMDRLRNETG*
AL20A1W_10098301	3300000880	Permafrost	RVQRSGSNGTLVHFRCTNPAHDRPAEQRSDTLTLVEGLWAYCPFDIRVGDHDWVSTGGVPMAELRRPTR*
AL16A1W_100462354	3300000887	Permafrost	MERTGAKRTLVHFRCTNPAHARPATLRSDTLTVVEGLWAYCPFDIRVGDHDWQPTGGVTMGELRGETV*
A21PFW6_12098681	3300001333	Permafrost	MERSGSKGTLVYFRCTNGAHARPAAQRSDTLTLFEGLWAYCPFNVRAGDHEWVPTGGVTMDSLRTETDGAGLFGQPAEEDPRGRKEPDPESG*
A2065W1_100097661	3300001537	Permafrost	MERPGSKGTLVHFRCTSPAHARPAKQRSDTLTLVEGLWAYCPFDIRAGEHDWVPTGGVTMQELLTNSA*
A2065W1_100714234	3300001537	Permafrost	VHFRCTNPAHARPATQRSDTLTLFEGLWAYCPFDVRAGEHDWVPTGGVTMDRLRNETG*
A10PFW1_110043032	3300001538	Permafrost	MERSGSKGTLVHFRCTSPAHARPAKQRSDTLTLVEGLWAYCPFDIRAGEHDWVPTGGVTMQELLTNSA*
A2135W6_10179162	3300001566	Permafrost	MERSGSKGTLVHFRCTKAAHARPPATRSDTLTLVEGLWAYCPFDIRAGDHDWVPTGGVTMESLRNEAGDAGLFGKPAEEDA*
JGI12053J15887_104301851	3300001661	Forest Soil	VERPAAKGTLVHFRCTNPAHAREAAQRSDTLTLFEGLWAYCPFNVRASDHEWAPTGGVAVEALRGEGG*
P5cmW16_10150812	3300001664	Permafrost	MERSGSKGTLVHFRCTNPDHGRPPAKRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGEPGLFGQPAEEDA*
smpD1_10053112	3300002025	Permafrost And Active Layer Soil	MERSGSKGTLVHFRCTNPAHARPAEQRSDTLTLVEGLWAYCPFDIRAGEHVWVPTGGVAMQELRTGTP*
smpD1_10107692	3300002025	Permafrost And Active Layer Soil	MERTGSPGTLVHFRCTAAAHQRSAGTPSDTLTLVEGLWAYCPLDVRVAGHLWEPTGGVTLASLRAAGI*
Ga0062593_1003811093	3300004114	Soil	MVMERSGSKGTLVHFRCTNPAHGRPLAKRSDTLTLVEGLWAYCPFDIRAGDHQWVPTGGVTMDSLRTEAGEAGPGEAGLFGQPTEEDA*
Ga0062595_1001985671	3300004479	Soil	MERSGSKGTLVHFRCTNPAHGRPPATRSDTLTLVEGLWAYCPFDIRAGDHEWAPTGGVTMESLRTEAGGAALFGQPAEENA*
Ga0066677_100997842	3300005171	Soil	MERPGSKATLVHFRCTNPAHLRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAATGGVTMAQLRDETS*
Ga0066688_104294212	3300005178	Soil	VGVERSASKGTLVHFRCTNPAHVRPASERSDQLTLHEGLWAYCPFNVRAGDHEWAPTGGVTMEQLRAETS*
Ga0066675_104192562	3300005187	Soil	MERPGSKATLVHFRCTNPAHRRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMAQLRDETS*
Ga0070692_108104241	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MERSGSKGTLVHFRCTKVAHARPPTNRSDTLTLVEGLWAYCPFDIRAGQHEWVPTGGVTMDSLRTET
Ga0070671_1010319532	3300005355	Switchgrass Rhizosphere	MERSGSKGTLVHFRCTKVAHARPPTSRSDTLTLVEGLWAYCPFDIRAGQHEWVPTGGVTMDSLRTETAEAGLFGQPAEEDA*
Ga0070708_1000024872	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MERPGAKGTLVHFRCTNPAHERPPSQRSDTLTLFEGLWAYCPFNVRAGEHDWAPTGGVTIETIRGEAG*
Ga0070708_1000510232	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MERPGTKGTLVHFRCENPAHLPSGGRPSDTITLVEGLWAYCPHDVRVGDHDWRPTGGVKLEELLKAAP*
Ga0066687_100764092	3300005454	Soil	MQRPGSKGTQVHFRCTNPAHARPAAQRSDTLTLFEGLWAYCPFDVRAGDHQWEPTGGVTLETLRSESV*
Ga0070706_1017979151	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAAKGTLVHFRCKNPAHDGSDGHPSDTVTLVEGLWAYCPRDVRVGDHDWSPTGGVKMEELLDAAP*
Ga0070707_1010158832	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAAKGTLVHFRCENPAHGRLDGRPSDTVTLVEGLWAYCPHDVRVGEHDWHPTGGVKIEELLEAAP*
Ga0070698_10000022760	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAAKGTLVHFRCENPDHGRSDGRPSDTVTLVEGLWAYCPRDVRIGDHDWHPTGGVKMEELLQAAP*
Ga0070699_10000979911	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAAKGTLVHFRCENPAHGRSDGRPSDTVTLVEGLWAYCPHDVRVGDHDWRPTGGVKMEELLQAAP*
Ga0070730_100063875	3300005537	Surface Soil	MERPGAKGTLVHFRCTNPAHARPRGERSDTLTLVEGLWAYCPLDIRAGGHDWQPTGGVPLDELRTEAG*
Ga0070695_1002120142	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MERSGSKGTLVHFRCTKVAHARPPTNRSDTLTLVEGLWAYCPFDIRAGQHEWVPTGGVTMDSLRTETAEAGLFGQPAEEDA*
Ga0066707_100137445	3300005556	Soil	MERPGAKGTLVHFRCENPAHRRSDTRPSDTLTLVEGLWAYCPMDVRADGHDWRPTGGVTMEALLGPPGSLG*
Ga0066704_100776232	3300005557	Soil	VERSASKGTLVHFRCTNPAHVRPASERSDQLTLHEGLWAYCPFNVRAGDHEWAPTGGVTMEQLRAETS*
Ga0066704_101889382	3300005557	Soil	MERPGAKGTLVHCRCENPAHRRPDTRPSDTLTLVEGLWAYCPMDVRAEGHDWRPTGGVTMEALLGPPGSLG*
Ga0066704_104522062	3300005557	Soil	MERSAGKGTLVHFRCAAPAHAPDGQPSDTVTLVEGLWAYCPHDVRADGHDWRPTGGLKM
Ga0066700_107305302	3300005559	Soil	VERSASKGTLVHFRCTNPAHVRPASERSDQLTLHEGLWAYCPFNVRAGDHEWAPTGGVTMEQLRAET
Ga0066699_101389514	3300005561	Soil	MERPASKGTLVHFRCTNPAHLRPGPERSDQLTLNEGLWAYCPFNVRAGDHVWAPTGGVTMEQLRAETS*
Ga0066699_106480762	3300005561	Soil	MERPGAKGTLVHFRCTNPAHARPAAERSDTLTLVEGLWAYCPFDIRAGGHDWQPTGGVPLGQLRSEGG*
Ga0066699_110497242	3300005561	Soil	MQRSGSKGTLVHFKCTNPAHARPAEQRSDTLTLFDGLWAYCPFDIRAGDHDWQPTGGVTLDALRSEGA*
Ga0066705_102328392	3300005569	Soil	MERPAAKGTLVHFRCANPAHDGMDGHPSDTVTLVEGLWAYCPRDIRIGDHDWRPTGGVKMEELREAAP*
Ga0066708_109293091	3300005576	Soil	SVQPAAERPEKGRWGMERPGSKATLVHFRCTNPAHRRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMAQLRDEPS*
Ga0066696_100230645	3300006032	Soil	MERPGSKATLVHFRCTNPAHLRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMAQLRDETS*
Ga0070712_1008497242	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MERSGSKGTLVHFRCTNPAHGRPPATRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGEAGLFG*
Ga0066665_105310081	3300006796	Soil	MERPGAKGTLVHFRCENPAHRRPDTRPSDTLTLVEGLWAYCPMDVRAEGHDWRPTGGVTMEALLGPPGSLG*
Ga0066660_103804141	3300006800	Soil	MERPGAKGTLVHFRCTNPAHARPTGERSDTLTLVEGLWAYCPFDIRAGDHDWRPTGGVPLDQLRNDADSLG*
Ga0079220_106248072	3300006806	Agricultural Soil	MERPGAKGTLVHFRCTNPAHARPAGERSDTLTLVEGLWAYCPFDIRAGGHDWQPTGGVPLDELRTEAG*
Ga0075426_109981551	3300006903	Populus Rhizosphere	MERPAPKGTLVHFRCENPAHDGSDGHPSDTVTLVEGLWAYCPRDVRVGDHDWRPTGGVKIEDLQNAAAR*
Ga0075436_1000616154	3300006914	Populus Rhizosphere	MERPGAKGTLVHFRCTNPAHARPTGERSDTLTLVEGLWAYCPFDIRAGDHDWQPTGGVPLDELRTEAG*
Ga0075436_1003034124	3300006914	Populus Rhizosphere	LVHFRCTNPGHDRPPAQRSDTLTLFEGLWAYCPFDVRAGDHDWAPTGGVPIDVLRSGPPELFG*
Ga0104323_1239504	3300007821	Soil	MERTGAKRTLVHFRCTNPAHARPATLRSDTLTLVEGLWAYCPFDIRVGDHDWQPTGGVTMGELRGETA*
Ga0066710_1015646391	3300009012	Grasslands Soil	VGVERSASKGTLVHFRCTNPAHVRPASERSDQLTLHEGLWAYCPFNVRAGDHEWAPTGGVTMEQLRAETS
Ga0066709_1018633951	3300009137	Grasslands Soil	MGTTAGGTTGERTVGVERSASKGTLVHFRCTNPAHVRPASERSDQLTLHEGLWAYCPFNVRAGDHEWAPTGGVTMEQLRA
Ga0066709_1021009581	3300009137	Grasslands Soil	MERPASKGTLVHFRCTNPAHLRPGPERSDQLTLNEGLWAYCPFNVRAGDHVWAPTGGVTMEQLRAEPS*
Ga0134067_104934442	3300010321	Grasslands Soil	MERPASKGTLVHFRCANPAHDGADGHPSDTVTLVEGLWAYCPRDIRIGDHDWRPTGGVKMEELREAAP*
Ga0137391_104193203	3300011270	Vadose Zone Soil	MERPGAKGTLVHFRCENPAHSPSDGRPSDTITLVEGLWAYCPMDVRADGHDWRPTGGVTMEQLLDEAN*
Ga0137391_105020512	3300011270	Vadose Zone Soil	MERSAPKGTLVHFRCTNPAHLRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMEQLLAQPS*
Ga0120157_10050794	3300011994	Permafrost	MDEERTPRVQRSGSNGTLVHFRCTNPAHDRPAEQRSDTLTLVEGLWAYCPFDIRVGDHGWVSTGGVPMAELRRPTR*
Ga0120157_10399043	3300011994	Permafrost	MERSGSRGTLVHFRCTNPAHARPAEQQSDTLTLVEGLWAYCPFDIRVGDHIWDPTGGGTMQE
Ga0120157_10824381	3300011994	Permafrost	MERSGSKGTLVYFRCTNPAHARPAQLRSDTLTIVEGLWAYCPFDIRAGEHDWVPTGGVPMQELRRGSG*
Ga0120156_10047894	3300011996	Permafrost	MERPGAKGTLVHFRCTNPAHVSPTAQRSDTLTLFEGLWAYCPLDVRAGEHEWVPTGGVTMDSLRNETG*
Ga0120156_10131354	3300011996	Permafrost	MDEERTPRVQRSGSNGTLVHFRCTNPAHDRPAERRSDTLTLVEGLWAYCPFDIRVGDHDWVSTGGVPMAELRRPTP*
Ga0120148_10039302	3300011999	Permafrost	VVTVVMERSGSKGTLVHFRCTNPVHGRPPAKRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGEPGLFGQPAEEDA*
Ga0120163_11301091	3300012003	Permafrost	MERSGSKGTLVYFRCTNGAHARPAAQRSDTLTLFEGLWAYCPFNVRAGDHEWVPTGGVTMDSLRTETDGAGLFGQPAEEDPRGRKEPDPESS*
Ga0120118_10026832	3300012010	Permafrost	VVTVVMERSGSKGTLVHFRCTNPVHGRPPAKRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGGPGLFG*
Ga0120139_10378192	3300012019	Permafrost	MERPGAKGTLVHFRCTNPAHVRPAAQRSDTLTLFEGLWAYCPFNVRAGEHEWAPTGGVTMDTLRKEAG*
Ga0137374_106732812	3300012204	Vadose Zone Soil	LPHKAPERPADSDRERVVDMERPGSKRTLVHFRCTNPAHARQAPKRSDTLTLVEGLWAYCPLNVREGDHEWAPTGGVTMEELRNEPG*
Ga0137380_103430442	3300012206	Vadose Zone Soil	MERSASKGTLVHFRCTNPAHLRQATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMEQLLAQPS*
Ga0137378_101003402	3300012210	Vadose Zone Soil	MERPAAKGTLVHFRCKNPAHDRADGHPSDTVTLVEGLWAYCPRDVRIGDHDWQPTGGVKMEELRDAAP*
Ga0137370_107439141	3300012285	Vadose Zone Soil	MERPAAKGTLVPFRCANPGHDGMDGHPSDTVTLVEGLWAYCPRDVRIGEHDWRPTGGVKMDELREAAP*
Ga0137390_118681542	3300012363	Vadose Zone Soil	MERPASKGTLVHFRCTNPAHAWSAAERSDTLTLFEGLWAYCPFDIRAGDHVWSPTGGVTIERLRQD*
Ga0137390_119547732	3300012363	Vadose Zone Soil	MERSASKGTLVHFRCTNPAHLRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMEQLLAQPS*
Ga0137373_111092402	3300012532	Vadose Zone Soil	MVDMERPGSKDTLVHFRCTNPAHARQAPKRSDTLTLVEGLWAYCPLNVRESDHEWEPTGGVTMAELRNEAG*
Ga0137359_110842762	3300012923	Vadose Zone Soil	MQRSGSKGTLVHFRCTNPAHARPATQRSDTLTLVEGLWAYCPFDIRAGDHEWAPTGGVTLAELRNESD*
Ga0120154_10012164	3300013501	Permafrost	MDEERTPRVQRSGSNGTLVHFRCTNPAHDRPAEQRSDTLTLVEGLWAYCPFDIRVGDHDWVSTGGVPMAELRRPTR*
Ga0120127_101272491	3300013503	Permafrost	MERSGSKGTLVHFRCTNPVHGRPPAKRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGGAELFG*
Ga0120179_10168244	3300013763	Permafrost	MERSGSKGTLVYFRCTNGAHARPAAQRSDTLTLFEGLWAYCPFNVRAGDHEWVPTGGVTMDSLRTETDGAGLFG*
Ga0120155_100039815	3300013768	Permafrost	MDEERTPRVQRSGSNGTLVHFRCTNPAHVRPAEQRSDTLTLVEGLWAYCPFDIRVGDHDWVSTGGVPMAELRRPTR*
Ga0120158_100311382	3300013772	Permafrost	MERSGSKGTLVYFRCTNPAHARPAQLRSDTLTIVEGLWAYCPFDIRAGEHDWVPTGGVPMQELQT*
Ga0120109_10183584	3300014052	Permafrost	MQRSGSKGTLVHFWCTNPAHARPAKERSDTLTLFERLWAYGPFDVRAGDHEWAPTGGVTMDALRTGAV*
Ga0120109_10220521	3300014052	Permafrost	TLVHFRCTNPVHGRPPAKRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGGAELFG*
Ga0120170_10871582	3300014823	Permafrost	MERPGSKGTLVHFRCTSPAHARPAKQRSDTLTLVEGLWAYCPFDIRAGEHDWVPTGGVPIQELQT*
Ga0167655_10218163	3300015086	Glacier Forefield Soil	VQRSGSKGTLVHFRCTNPAHDRPAELRSDTLTLVEGLWAYCPFDIRAGEHEWVSTGGVPMAELRKSSS*
Ga0167653_100018511	3300015162	Glacier Forefield Soil	MERSASKRTLVHFRCTNPAHDRPAAQRSDTLTLVEGLWAYCPFNVRAADHEWVPTGGLTMAELLSEGG*
Ga0167652_10125992	3300015164	Glacier Forefield Soil	MERSASKRTIVHFRCTNPAHDRPAAQRSDTLTLVEGLWAYCPFNVRAADHEWVPTGGLTMAELLSEGG*
Ga0167648_10144342	3300015171	Glacier Forefield Soil	VQRSGSKGTLVHFRCTNPAHDRPAEQRSDTLTLVEGLWAYCPFDIRAGEHEWVSTGGVPMAELRRSAS*
Ga0167648_10147812	3300015171	Glacier Forefield Soil	VQRSGSKGTLVHFRCTNPEHERPAEQRSDTLTLVEGLWAYCPFDIRIGDHDWSPTGGVTMAELREPSP*
Ga0167646_10106281	3300015192	Glacier Forefield Soil	VQRSGSKGTLVHFRCTNPAHDRPAEQRSDTLTLVEGLWAYCPFDIRAGQHEWVSTGGVPMSELRRPTP*
Ga0167658_10016219	3300015195	Glacier Forefield Soil	VHFRCTNPAHDRPAKQRSDTLTLVEGLWAYCPFDIRVGEHDWVSTGGVPMAELRKSTP*
Ga0182007_101237371	3300015262	Rhizosphere	MERPGAKGTLVHFRCTNPAHARPTGERSDTLTLVEGLWAYCPFDIRAGGHDWQPTGGVPLDELRTEAG*
Ga0137403_112492662	3300015264	Vadose Zone Soil	RHVSCLQNVHPRQQPTGERTVFMQRSGSKGTLVHFRCTNPAHARPATQRSDTLTLVEGLWAYCPFDIRASDHEWAPTGGVTLAELRNESD*
Ga0066669_108589272	3300018482	Grasslands Soil	MERPASKGTLVHFRCANPAHDGADGHPSDTVTLVEGLWAYCPRDVRIGDHDWRPTGGVTMEELREAAP
Ga0193722_10044994	3300019877	Soil	VVVERSGSKGTLVHFRCTNPVHERPPAKRSDTLTLVEGLWAYCPFDIRAGDHQWVPTGGVTMDSLRTEAGEAGPSGETGLFG
Ga0193718_10616451	3300019999	Soil	MERSGSKGTLVHFRCTNPVHERPPAKRSDTLTIVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGDPGLFG
Ga0193749_10905631	3300020010	Soil	MERSGSKGTLVHFRCTNPVHDRPPAKRSDTLTLVEGLWAYCPFNIRAGDHQWVPTGGVTMDSLRTEAGEAGPSGETGLFG
Ga0215015_100203281	3300021046	Soil	MERPGAKRTLVHFRCTNRAHARPRGELSDTLTLVEGLWAYCPFDFRAPDHDWQPTGGVTLERLQRELTEG
Ga0210382_100837772	3300021080	Groundwater Sediment	MERPGAKGTLVHFRCTNPAHVRPAAQRSDTLTLFEGLWAYCPFDVRAGEHEWAPTGGVTMDTLRKEAG
Ga0207684_114535231	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MERPAAKGTLVHFRCKNPAHDGSDGHPSDTVTLVEGLWAYCPRDVRVGDHDWSPTGGVKMEELLDAAP
Ga0207654_103360693	3300025911	Corn Rhizosphere	MERSGSKGTLVHFRCTKVAHARPPTNRSDTLTLVEGLWAYCPFDIRAGQHEWVPTGGVTMDSLRTETAEAGLFGQ
Ga0207693_100516032	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MVMERSGSKGTLVHFRCTNPAHGRPLAKRSDTLTLVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTEAGEAGLFG
Ga0209238_10817852	3300026301	Grasslands Soil	MQRPGSKGTQVHFRCTNPAHARPAAQRSDTLTLFEGLWAYCPFDVRAGDHQWEPTGGVTLETLRSESV
Ga0209647_10667483	3300026319	Grasslands Soil	MERSAGKGTLVHFRCGNPAHAPDGQPSDTVTLVEGLWAYCPYNVRADGHDWRPTGGRKIEELQAAAP
Ga0209472_10471133	3300026323	Soil	MERPGSKATLVHFRCTNPAHRRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAPTGGVTMAQLRDEPS
Ga0209378_12638211	3300026528	Soil	MERPGAKGTLVHFRCENPAHRRSDTRPSDTLTLVEGLWAYCPMDVRADGHDWRPTGGVT
Ga0209807_10402523	3300026530	Soil	MERPGSKATLVHFRCTNPAHLRPATERSDQLTLHEGLWAYCPFNVRAGEHVWAATGGVTMAQLRDETDWGQQIKRPKAR
Ga0209805_13061581	3300026542	Soil	MERPASKGTLVHFRCTNPAHLRPGPERSDQLTLNEGLWAYCPFNVRAGDHVWAPTGGVTMEQLRAETS
Ga0209161_102156732	3300026548	Soil	MGTTAGGTTGERTVGVERSASKGTLVHFRCTNPAHVRPASERSDQLTLHEGLWAYCPFNVRAGDHEWAPTGGVTMEQLRAETS
Ga0209166_100093897	3300027857	Surface Soil	MERPGAKGTLVHFRCTNPAHARPRGERSDTLTLVEGLWAYCPLDIRAGGHDWQPTGGVPLDELRTEAG
Ga0307296_106969812	3300028819	Soil	MERPGAKGTLVHFRCTNPAHVRPAAQRSDTLTLFEGLWAYCTFDVRAGEHEWAPTGGVTMDTLRKEAG
Ga0307312_103368032	3300028828	Soil	MERSGSKGTLVHFRCTNPVHERPPAKRSDTLTIVEGLWAYCPFDIRAGDHEWVPTGGVTMDSLRTGSGGAELFGQPAEEDA
Ga0310813_100133327	3300031716	Soil	MERSGSKGTLVHFRCTKVAHARPPTNRSDTLTLVEGLWAYCPFDIRAGQHEWVPTGGVTMDSLRTETAEAGLFGQPAEEDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087550

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with PDB biological assemblies

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences