Metagenome / Metatranscriptome Family F087539

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087539
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	46 residues
Representative Sequence	MGRTFAAFVVAASLLTLASSEASAWVCFATGLGSSGRARAYDIID
Number of Associated Samples	77
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.18 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.546 % of family members)
Environment Ontology (ENVO)	Unclassified (46.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.42% β-sheet: 0.00% Coil/Unstructured: 46.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00440	TetR_N	22.73
PF16859	TetR_C_11	13.64
PF00571	CBS	12.73
PF04392	ABC_sub_bind	3.64
PF00005	ABC_tran	2.73
PF13533	Biotin_lipoyl_2	1.82
PF05988	DUF899	0.91
PF10025	DUF2267	0.91
PF12697	Abhydrolase_6	0.91
PF07813	LTXXQ	0.91
PF13361	UvrD_C	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.64
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.64
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.18 %
Unclassified	root	N/A	11.82 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.45 %
Unclassified	root	N/A	11.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	73.64 %
Unclassified	root	N/A	11.82 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	26.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.00 %
Unclassified	root	N/A	11.82 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.36 %
Unclassified	root	N/A	11.82 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.64 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.82 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.36 %
Unclassified	root	N/A	11.82 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.73 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.82 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.36 %
Unclassified	root	N/A	11.82 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	5.45 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	1.82 %
Bradyrhizobium brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	0.91 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.36 %
Unclassified	root	N/A	11.82 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5.45 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	1.82 %
Pseudolabrys sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	0.91 %
Bradyrhizobium brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11812063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10008976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2389	Open in IMG/M
3300002914\|JGI25617J43924_10008427	All Organisms → cellular organisms → Bacteria	3288	Open in IMG/M
3300005187\|Ga0066675_10344979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1088	Open in IMG/M
3300005332\|Ga0066388_103429738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300005332\|Ga0066388_103831424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300005332\|Ga0066388_104829892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300005332\|Ga0066388_105872587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300005332\|Ga0066388_107143257	Not Available	561	Open in IMG/M
3300005332\|Ga0066388_108374663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300005332\|Ga0066388_108492604	Not Available	511	Open in IMG/M
3300005363\|Ga0008090_10184466	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300005454\|Ga0066687_10778195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300005471\|Ga0070698_100499333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1154	Open in IMG/M
3300005575\|Ga0066702_10453476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300005713\|Ga0066905_100637205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	907	Open in IMG/M
3300005713\|Ga0066905_101331255	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300005764\|Ga0066903_105417018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300005764\|Ga0066903_105553727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300005764\|Ga0066903_106818261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	593	Open in IMG/M
3300005764\|Ga0066903_107972011	Not Available	543	Open in IMG/M
3300006175\|Ga0070712_101309443	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300006806\|Ga0079220_10725851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300009792\|Ga0126374_10399645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	960	Open in IMG/M
3300010046\|Ga0126384_10158021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp.	1753	Open in IMG/M
3300010046\|Ga0126384_11974698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300010358\|Ga0126370_11466842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	647	Open in IMG/M
3300010358\|Ga0126370_11718967	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300010358\|Ga0126370_12552493	Not Available	510	Open in IMG/M
3300010360\|Ga0126372_11798090	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300010366\|Ga0126379_13265238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300010376\|Ga0126381_100106766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3589	Open in IMG/M
3300010376\|Ga0126381_101724164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	905	Open in IMG/M
3300010376\|Ga0126381_101729862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300010376\|Ga0126381_102195279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300010398\|Ga0126383_10811186	Not Available	1019	Open in IMG/M
3300010398\|Ga0126383_12418527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300010398\|Ga0126383_13404037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300012200\|Ga0137382_11265536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300012210\|Ga0137378_10460246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1177	Open in IMG/M
3300012350\|Ga0137372_10867354	All Organisms → cellular organisms → Bacteria → Proteobacteria	643	Open in IMG/M
3300012358\|Ga0137368_10001934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22133	Open in IMG/M
3300012930\|Ga0137407_10827194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	875	Open in IMG/M
3300012948\|Ga0126375_10781361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	754	Open in IMG/M
3300012971\|Ga0126369_10339593	All Organisms → cellular organisms → Bacteria → Proteobacteria	1519	Open in IMG/M
3300012971\|Ga0126369_11555059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300012971\|Ga0126369_11788528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300016270\|Ga0182036_11548701	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300016294\|Ga0182041_11912590	Not Available	551	Open in IMG/M
3300016294\|Ga0182041_12260455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300016341\|Ga0182035_10750618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300016387\|Ga0182040_11048277	Not Available	681	Open in IMG/M
3300016387\|Ga0182040_11133550	Not Available	656	Open in IMG/M
3300016387\|Ga0182040_11242725	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300016404\|Ga0182037_11163680	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300016404\|Ga0182037_11583213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300016404\|Ga0182037_11791065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300016422\|Ga0182039_11043654	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300018027\|Ga0184605_10543151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300025939\|Ga0207665_10266786	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1270	Open in IMG/M
3300026315\|Ga0209686_1231644	Not Available	502	Open in IMG/M
3300026326\|Ga0209801_1335491	Not Available	533	Open in IMG/M
3300026498\|Ga0257156_1059775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300026527\|Ga0209059_1102767	All Organisms → cellular organisms → Bacteria → Acidobacteria	1152	Open in IMG/M
3300026552\|Ga0209577_10651517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300027502\|Ga0209622_1048815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300027654\|Ga0209799_1057972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	869	Open in IMG/M
3300031545\|Ga0318541_10218364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300031545\|Ga0318541_10388757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300031546\|Ga0318538_10137331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1285	Open in IMG/M
3300031549\|Ga0318571_10383196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031561\|Ga0318528_10005237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5575	Open in IMG/M
3300031564\|Ga0318573_10179399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1118	Open in IMG/M
3300031564\|Ga0318573_10335063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	811	Open in IMG/M
3300031668\|Ga0318542_10429248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	684	Open in IMG/M
3300031682\|Ga0318560_10094770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1538	Open in IMG/M
3300031713\|Ga0318496_10063233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1938	Open in IMG/M
3300031736\|Ga0318501_10063855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1761	Open in IMG/M
3300031740\|Ga0307468_101324901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300031744\|Ga0306918_10331076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1178	Open in IMG/M
3300031744\|Ga0306918_10363176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1124	Open in IMG/M
3300031747\|Ga0318502_10060410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2018	Open in IMG/M
3300031768\|Ga0318509_10621328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300031771\|Ga0318546_10308441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300031777\|Ga0318543_10161069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300031778\|Ga0318498_10341201	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300031779\|Ga0318566_10097327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1441	Open in IMG/M
3300031782\|Ga0318552_10144936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1191	Open in IMG/M
3300031796\|Ga0318576_10027276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2331	Open in IMG/M
3300031796\|Ga0318576_10376011	Not Available	671	Open in IMG/M
3300031797\|Ga0318550_10499952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300031798\|Ga0318523_10208575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300031832\|Ga0318499_10098148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
3300031894\|Ga0318522_10052989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1436	Open in IMG/M
3300031942\|Ga0310916_11373035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300032001\|Ga0306922_11596495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium brasilense	649	Open in IMG/M
3300032054\|Ga0318570_10515748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300032055\|Ga0318575_10098446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1415	Open in IMG/M
3300032055\|Ga0318575_10109311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1348	Open in IMG/M
3300032060\|Ga0318505_10207742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	917	Open in IMG/M
3300032063\|Ga0318504_10405931	All Organisms → cellular organisms → Bacteria → Proteobacteria	649	Open in IMG/M
3300032064\|Ga0318510_10501718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
3300032065\|Ga0318513_10347815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300032065\|Ga0318513_10605670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300032066\|Ga0318514_10045871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2100	Open in IMG/M
3300032089\|Ga0318525_10355643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300032094\|Ga0318540_10075746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1553	Open in IMG/M
3300032094\|Ga0318540_10091223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1424	Open in IMG/M
3300032180\|Ga0307471_101467357	Not Available	841	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.09%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.09%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.91%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_118120631	3300000787	Soil	MGRTLAAFVVAASLLTLASSEAAAWVCRAAGLGSSGYARAYDIIDAKLFALRQ
AF_2010_repII_A001DRAFT_100089761	3300000793	Forest Soil	MGRTLAAFVVAASLLTVASSEASAWVCFATGLGSSGTARAYDIID
JGI25617J43924_100084271	3300002914	Grasslands Soil	MGRILTAFVVAGSLLTLAPSEASAWACFATGLGSSGFARAYDIIDAKLFALR
Ga0066675_103449791	3300005187	Soil	MGRTLAAFVVAASLLTLASSEAAAWECRAVGLGSSGYARAYDI
Ga0066388_1034297382	3300005332	Tropical Forest Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCER
Ga0066388_1038314242	3300005332	Tropical Forest Soil	MGRTFAAFIVAASLLAVASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCER
Ga0066388_1048298923	3300005332	Tropical Forest Soil	MVCAASLLTLASSEASAWVCFATGLGSSGYARAYDIIDAKLF
Ga0066388_1051086222	3300005332	Tropical Forest Soil	MGRLIGALILAAPLLAAASSEASAWVCHATGLGSGASARSYSIIDAKLWALRRCERG
Ga0066388_1058725872	3300005332	Tropical Forest Soil	MGRIVAAFVVAASLLAVASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCER
Ga0066388_1071432571	3300005332	Tropical Forest Soil	MGPTRATFVVAASLLTLASSEAAAWECRAAGLGSSGYARAYDIV
Ga0066388_1083746631	3300005332	Tropical Forest Soil	MGRTLAVFAVAASLLTLASSEASAWVCFATGLGSSGYARAYDIIDAKLF
Ga0066388_1084926042	3300005332	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCRAIGLGSSGYARAYDIIDAKL
Ga0008090_101844661	3300005363	Tropical Rainforest Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDA
Ga0066687_107781952	3300005454	Soil	MGRTLAAFVVAASLSTFASSEAAAWVCRAVGLGSSGFARA
Ga0070698_1004993334	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALR
Ga0066702_104534761	3300005575	Soil	MGRTLAALVVAGSLLTLASSEASAWVCFATGLGSGGYGRSYDIIDAKLF
Ga0066905_1006372051	3300005713	Tropical Forest Soil	MGRILAGFVVAASLLTLASSEASAWVCYATGFGSIGSARAYSIIDAKLFALRRCERNSL
Ga0066905_1013312552	3300005713	Tropical Forest Soil	MGRTVGAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIID
Ga0066903_1054170182	3300005764	Tropical Forest Soil	MGRTLVAFVVAASLLVLASSEAAAWECRAVGLGSSGYARAYDIIDAKLFALRQCE
Ga0066903_1055537271	3300005764	Tropical Forest Soil	MGRTLAVFAVATSLLTLASSEASAWVCFATGLGSSGYARAYDIIDAKLFAL
Ga0066903_1068182612	3300005764	Tropical Forest Soil	MGRTFAAFVVAASLLTLASSEASAWVCFATGLGSSGRARAYDIID
Ga0066903_1079720112	3300005764	Tropical Forest Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAK
Ga0070712_1013094431	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGRTVAAFVVAASLLAVASSEASAWVCFATGLGSGGYGRS
Ga0079220_107258511	3300006806	Agricultural Soil	MGRTLAALVVAGSLLTLASSEASAWVCFATGLGSGGYGRSYDIIDAKLFALRRC
Ga0126374_103996452	3300009792	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCRAIGLGSSGYAR
Ga0126384_101580213	3300010046	Tropical Forest Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSSGFARAFD
Ga0126384_119746982	3300010046	Tropical Forest Soil	MGRILAGFVVAASLLTLASSEASAWVCYATGFGSIGSARAYSIIDAKLFALRRCE
Ga0126370_114668422	3300010358	Tropical Forest Soil	MRRSFAAFVVAATLASSEASAWVCFATGLGSSGRARAYDIIDAKLFALR
Ga0126370_117189672	3300010358	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGG
Ga0126370_125524932	3300010358	Tropical Forest Soil	MGRLIGALILAAPLLAAASSEASAWVCHATGLGSG
Ga0126372_117980901	3300010360	Tropical Forest Soil	MRRSFAAFVVAASLLTLASSEASAWVCFATGLGSSGRARSYDIIDAKLF
Ga0126379_132652381	3300010366	Tropical Forest Soil	MGRTLAAFVVAASLLTVASSEASAWVCFATGLGSSGTARAYDIIDAKLFALRR
Ga0126381_1001067661	3300010376	Tropical Forest Soil	MGRTLAAFAVAASLLTLTTSEASAWVCYATGLGTRGYARAYDIIDAKL
Ga0126381_1017241641	3300010376	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYA
Ga0126381_1017298621	3300010376	Tropical Forest Soil	MGRTLAALVVAASLLTLASSEASAWVCFATGLGSSGYGRSYDIIDAKLFALRR
Ga0126381_1021952792	3300010376	Tropical Forest Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYAR
Ga0126383_108111863	3300010398	Tropical Forest Soil	MGRTLAAFAVAALLLTLASSEVSAWVCSASGLGSSGYARAYDII
Ga0126383_124185272	3300010398	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGFARAYDIIDAKLFALRRC
Ga0126383_134040372	3300010398	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGFARAY
Ga0137382_112655361	3300012200	Vadose Zone Soil	MGRTLAAFAVAASLLTLASSEASAWVCFATGLGSGGWGRS*
Ga0137378_104602463	3300012210	Vadose Zone Soil	MGRTLAAFVVAASLLTLASSEAAAWVCRAAGLGSSGYARAYDIIDAKLFALRQCER
Ga0137372_108673542	3300012350	Vadose Zone Soil	MGRTLAAFVVAASLLTMASSEASAWVCYATGLGSG
Ga0137368_100019341	3300012358	Vadose Zone Soil	MGRTLAAFAVAASLLTLASSEASAWVCYATGLGSSGAA
Ga0137407_108271941	3300012930	Vadose Zone Soil	MGRTFAAFVVAASLLAVASSEASAWVCFATGLGSSGRARSYDII
Ga0126375_107813612	3300012948	Tropical Forest Soil	MGRTLAAFAVAASLLTLTTSEASAWVCYATGLGTRGYARAYDIIDA*
Ga0126369_103395934	3300012971	Tropical Forest Soil	MGRTLAAFVVAASLLTVASSEASAWVCFATGLGSSGTARAYDIIDAKLFALRRCE
Ga0126369_115550592	3300012971	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAK
Ga0126369_117885282	3300012971	Tropical Forest Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDI
Ga0182036_115487011	3300016270	Soil	MGRTLAAFVVAASLLTVASSEASAWVCFATGLGSSGTARAYDIIDAKLFA
Ga0182041_119125901	3300016294	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLF
Ga0182041_122604551	3300016294	Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIID
Ga0182035_107506181	3300016341	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSS
Ga0182040_110482772	3300016387	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDII
Ga0182040_111335501	3300016387	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSS
Ga0182040_112427251	3300016387	Soil	MGRTFAAFVLSASLLAAASSEASAWVCFATGLGSSGRA
Ga0182037_111636802	3300016404	Soil	MGRTFAAFVLSASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFAL
Ga0182037_115832132	3300016404	Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAY
Ga0182037_117910652	3300016404	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAY
Ga0182039_110436542	3300016422	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYD
Ga0184605_105431511	3300018027	Groundwater Sediment	MGRTLAAAVIAASLLAIGCSEASAWVCFATGLGSGG
Ga0207665_102667862	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MGRTLSAFVVAASLLTLASSEASAWVCFATGLGSGG
Ga0209686_12316441	3300026315	Soil	MGRTLAAFVVAASLLTFASSEAAAWVCRAVGLGSSGFAR
Ga0209801_13354911	3300026326	Soil	MGRTFAAFVVAASLLAVASSEASAWVCFATGLGSSGRARSYD
Ga0257156_10597751	3300026498	Soil	MGRTLAAFVVAASLSTLASSEAAAWVCRAVGLGSSGYA
Ga0209059_11027673	3300026527	Soil	MGRTLAALVVAGSLLTLASSEASAWVCFATGLGSGGYGRSYDIIDAKLFALRR
Ga0209577_106515171	3300026552	Soil	MGRTLAAFVVAASLLTFASSEAAAWVCRAVGLGSSGFARAYDIADA
Ga0209622_10488151	3300027502	Forest Soil	MGRTRATFVVAASLLTLASSEAAAWECRAAGLGSSGYARAYDIIDAKLFALRQC
Ga0209799_10579721	3300027654	Tropical Forest Soil	MGRTLAAFVVAASLLTLASSEASAWVCRAIGLGSSGYARAYDIIDAKLFALRQC
Ga0318541_102183641	3300031545	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRR
Ga0318541_103887572	3300031545	Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYARA
Ga0318538_101373313	3300031546	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSSGRARSYDI
Ga0318571_103831962	3300031549	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSSGFARAYDIIDAKLFA
Ga0318528_100052371	3300031561	Soil	MGRTLAAFVVAASLLTVASSEASAWVCFATGLGSSGTARAYD
Ga0318573_101793991	3300031564	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLF
Ga0318573_103350632	3300031564	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSSG
Ga0318542_104292482	3300031668	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSSGFARAYDIIDAKLFALRRCER
Ga0318560_100947701	3300031682	Soil	MGRTLAAFVVAASLLPLASSDAAAWVCRAVGLGSSGYAGAYD
Ga0318496_100632331	3300031713	Soil	MGRTVAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFALRRCE
Ga0318501_100638551	3300031736	Soil	MGRTFAAFVLSASLLAAASSEASAWVCFATGLGSSGRARSYD
Ga0307468_1013249012	3300031740	Hardwood Forest Soil	MGRTVAAFVVAASLLAVASSEASAWVCFATGLGSGGYGRSYDVIDAK
Ga0306918_103310762	3300031744	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERN
Ga0306918_103631762	3300031744	Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFAL
Ga0318502_100604101	3300031747	Soil	MGRTVAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFALRR
Ga0318509_106213282	3300031768	Soil	MGRTLAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDA
Ga0318546_103084412	3300031771	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYD
Ga0318543_101610691	3300031777	Soil	MGRTVAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYD
Ga0318498_103412012	3300031778	Soil	MGRTFAAFVLSASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAK
Ga0318566_100973273	3300031779	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCER
Ga0318552_101449363	3300031782	Soil	MGRTVAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFALRRC
Ga0318576_100272765	3300031796	Soil	MGRTFAAFVLSASLLAAASSEASAWVCFATGLGSSGRARSYDI
Ga0318576_103760112	3300031796	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKL
Ga0318550_104999522	3300031797	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFA
Ga0318523_102085751	3300031798	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSY
Ga0318499_100981482	3300031832	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFAL
Ga0318522_100529893	3300031894	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFALRRCER
Ga0310916_113730352	3300031942	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAK
Ga0306922_115964952	3300032001	Soil	MGRTFAAFVVAASLLTLASSEASAWVCFATGLGSGGVARAYDIIDAKL
Ga0318570_105157481	3300032054	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIIDAKLFALRRCERNS
Ga0318575_100984463	3300032055	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSSGRARSYDII
Ga0318575_101093113	3300032055	Soil	MGRTFAAFVVAASLLAAASSEASAWVCFATGLGSSGRARSYDIID
Ga0318505_102077422	3300032060	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSSGFARAYDIIDAKLFAL
Ga0318504_104059312	3300032063	Soil	MGRTFAAFVLSASLLAAASSEASAWVCFATGLGSSGRARSY
Ga0318510_105017182	3300032064	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGGYARA
Ga0318513_103478151	3300032065	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSS
Ga0318513_106056702	3300032065	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSSGFARAYDIIDAKLF
Ga0318514_100458711	3300032066	Soil	MGRTVAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLF
Ga0318525_103556431	3300032089	Soil	MGRIVAAFVVAASMLAAASSEASAWVCFATGLGSSGRARSYD
Ga0318540_100757463	3300032094	Soil	MGRTVAAFVVAASLLTLASSEASAWVCYATGLGSGGYARAYDIIDAKLFALRRCER
Ga0318540_100912231	3300032094	Soil	MGRTFAAFVVAASLLTLASSEASAWVCYATGLGSGG
Ga0307471_1014673571	3300032180	Hardwood Forest Soil	MGRTLAAFVVAASLLTLASSEASAWACRAIGLGSSGYARAYDIIDAKLFAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087539

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences