Metagenome / Metatranscriptome Family F087538

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087538
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	84 residues
Representative Sequence	RWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLATK
Number of Associated Samples	97
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	6.36 %
% of genes near scaffold ends (potentially truncated)	90.91 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.455 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (17.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 79.49% β-sheet: 0.00% Coil/Unstructured: 20.51%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07077	DUF1345	2.73
PF00581	Rhodanese	1.82
PF00805	Pentapeptide	1.82
PF01613	Flavin_Reduct	1.82
PF03610	EIIA-man	0.91
PF05425	CopD	0.91
PF16864	Dimerisation2	0.91
PF01380	SIS	0.91
PF00483	NTP_transferase	0.91
PF00291	PALP	0.91
PF12697	Abhydrolase_6	0.91
PF09939	DUF2171	0.91
PF01169	UPF0016	0.91
PF00005	ABC_tran	0.91
PF02371	Transposase_20	0.91
PF07992	Pyr_redox_2	0.91
PF08239	SH3_3	0.91
PF06736	TMEM175	0.91
PF03795	YCII	0.91
PF13519	VWA_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG4291	Uncharacterized membrane protein	Function unknown [S]	2.73
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.82
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	1.82
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	0.91
COG2119	Putative Ca2+/H+ antiporter, TMEM165/GDT1 family	General function prediction only [R]	0.91
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
All Organisms	root	All Organisms	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
cellular organisms	root	All Organisms → cellular organisms	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.73 %
Atribacterota	phylum	All Organisms → cellular organisms → Bacteria → Atribacterota	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
unclassified Atribacterota	no rank	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota	0.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.91 %
Atribacteria bacterium SCGC AAA255-N14	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AAA255-N14	0.91 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	7.27 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.73 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	2.73 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.82 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.91 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Atribacteria bacterium SCGC AAA255-N14	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AAA255-N14	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	5.45 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	2.73 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.73 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.82 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.82 %
Halioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Atribacteria bacterium SCGC AAA255-N14	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AAA255-N14	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	2.73 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.73 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.82 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.82 %
unclassified Halioglobus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus	0.91 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.91 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Atribacteria bacterium SCGC AAA255-N14	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AAA255-N14	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.45 %
Methylocapsa palsarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	2.73 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2.73 %
Rhizobium tropici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tropici	1.82 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.82 %
Halioglobus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus → Halioglobus sp.	0.91 %
Pseudomonas sp. GM48	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GM48	0.91 %
Methyloceanibacter caenitepidi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Atribacteria bacterium SCGC AAA255-N14	species	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AAA255-N14	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10030103	All Organisms → cellular organisms → Bacteria → Proteobacteria	3191	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10035778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1328	Open in IMG/M
3300000787\|JGI11643J11755_11760824	Not Available	1113	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10018767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1662	Open in IMG/M
3300000955\|JGI1027J12803_105290495	Not Available	542	Open in IMG/M
3300001990\|JGI24737J22298_10267211	Not Available	506	Open in IMG/M
3300002459\|JGI24751J29686_10081470	Not Available	670	Open in IMG/M
3300004114\|Ga0062593_100582541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1062	Open in IMG/M
3300004157\|Ga0062590_100256800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1321	Open in IMG/M
3300004463\|Ga0063356_101606203	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300004463\|Ga0063356_102086118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	860	Open in IMG/M
3300004481\|Ga0069718_15293421	Not Available	720	Open in IMG/M
3300004643\|Ga0062591_102704760	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300004803\|Ga0058862_11128938	Not Available	542	Open in IMG/M
3300005332\|Ga0066388_103016439	Not Available	860	Open in IMG/M
3300005332\|Ga0066388_104305327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	725	Open in IMG/M
3300005332\|Ga0066388_105756254	Not Available	627	Open in IMG/M
3300005332\|Ga0066388_108346375	Not Available	516	Open in IMG/M
3300005336\|Ga0070680_101956670	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300005341\|Ga0070691_10457685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	730	Open in IMG/M
3300005458\|Ga0070681_11477077	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005545\|Ga0070695_101801013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tropici	514	Open in IMG/M
3300005564\|Ga0070664_101298464	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005578\|Ga0068854_101627922	Not Available	589	Open in IMG/M
3300005617\|Ga0068859_102508156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium tropici	568	Open in IMG/M
3300005764\|Ga0066903_101323967	All Organisms → cellular organisms → Bacteria → Proteobacteria	1347	Open in IMG/M
3300005764\|Ga0066903_104843612	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300005842\|Ga0068858_102496437	Not Available	510	Open in IMG/M
3300006175\|Ga0070712_101386079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	613	Open in IMG/M
3300006196\|Ga0075422_10498839	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AAA255-N14	552	Open in IMG/M
3300006237\|Ga0097621_101443707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GM48	652	Open in IMG/M
3300006354\|Ga0075021_11140299	Not Available	511	Open in IMG/M
3300006854\|Ga0075425_101767833	Not Available	695	Open in IMG/M
3300009093\|Ga0105240_11927085	Not Available	615	Open in IMG/M
3300009148\|Ga0105243_11334551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	736	Open in IMG/M
3300009157\|Ga0105092_10072002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1874	Open in IMG/M
3300009168\|Ga0105104_10077623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1790	Open in IMG/M
3300009174\|Ga0105241_11752699	Not Available	605	Open in IMG/M
3300009551\|Ga0105238_11718824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	659	Open in IMG/M
3300009804\|Ga0105063_1014565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	877	Open in IMG/M
3300009822\|Ga0105066_1100741	Not Available	638	Open in IMG/M
3300010362\|Ga0126377_12681032	Not Available	573	Open in IMG/M
3300010362\|Ga0126377_12807272	Not Available	561	Open in IMG/M
3300010375\|Ga0105239_13473459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	512	Open in IMG/M
3300010397\|Ga0134124_12992894	Not Available	516	Open in IMG/M
3300010399\|Ga0134127_13146532	Not Available	539	Open in IMG/M
3300010401\|Ga0134121_11327600	Not Available	726	Open in IMG/M
3300010868\|Ga0124844_1079536	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300012903\|Ga0157289_10129454	Not Available	756	Open in IMG/M
3300012916\|Ga0157310_10185732	Not Available	745	Open in IMG/M
3300012955\|Ga0164298_10037895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2224	Open in IMG/M
3300012955\|Ga0164298_10598660	Not Available	756	Open in IMG/M
3300012957\|Ga0164303_10069673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1636	Open in IMG/M
3300012958\|Ga0164299_10490941	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300012961\|Ga0164302_11713243	Not Available	527	Open in IMG/M
3300012986\|Ga0164304_11031419	Not Available	653	Open in IMG/M
3300012987\|Ga0164307_10165572	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300012989\|Ga0164305_10956922	Not Available	724	Open in IMG/M
3300013296\|Ga0157374_12040835	Not Available	600	Open in IMG/M
3300013297\|Ga0157378_11118206	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300015264\|Ga0137403_11622531	Not Available	501	Open in IMG/M
3300015373\|Ga0132257_104341818	Not Available	516	Open in IMG/M
3300016357\|Ga0182032_11136745	Not Available	671	Open in IMG/M
3300016357\|Ga0182032_11581313	Not Available	570	Open in IMG/M
3300016371\|Ga0182034_10028245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3467	Open in IMG/M
3300017932\|Ga0187814_10027062	Not Available	2143	Open in IMG/M
3300017938\|Ga0187854_10451528	Not Available	536	Open in IMG/M
3300017974\|Ga0187777_10059111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2473	Open in IMG/M
3300017974\|Ga0187777_11084779	Not Available	582	Open in IMG/M
3300018001\|Ga0187815_10031766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	2240	Open in IMG/M
3300018007\|Ga0187805_10496326	Not Available	572	Open in IMG/M
3300018007\|Ga0187805_10522074	Not Available	557	Open in IMG/M
3300018007\|Ga0187805_10637833	Not Available	505	Open in IMG/M
3300018429\|Ga0190272_12231002	Not Available	588	Open in IMG/M
3300018481\|Ga0190271_13810213	Not Available	505	Open in IMG/M
3300019487\|Ga0187893_10579327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus → Halioglobus sp.	715	Open in IMG/M
3300021560\|Ga0126371_10358316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1595	Open in IMG/M
3300022883\|Ga0247786_1161002	Not Available	509	Open in IMG/M
3300022892\|Ga0247753_1008799	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300025905\|Ga0207685_10768575	Not Available	529	Open in IMG/M
3300025922\|Ga0207646_11485720	Not Available	587	Open in IMG/M
3300025933\|Ga0207706_11358330	Not Available	585	Open in IMG/M
3300025961\|Ga0207712_10129844	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300026041\|Ga0207639_11020001	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300026535\|Ga0256867_10291705	Not Available	579	Open in IMG/M
3300027743\|Ga0209593_10131430	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300028587\|Ga0247828_10120771	Not Available	1272	Open in IMG/M
3300031280\|Ga0307428_1076150	Not Available	924	Open in IMG/M
3300031368\|Ga0307429_1145791	Not Available	635	Open in IMG/M
3300031455\|Ga0307505_10544177	Not Available	562	Open in IMG/M
3300031564\|Ga0318573_10347401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	796	Open in IMG/M
3300031573\|Ga0310915_11269237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	508	Open in IMG/M
3300031724\|Ga0318500_10704468	Not Available	515	Open in IMG/M
3300031740\|Ga0307468_100007265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4030	Open in IMG/M
3300031744\|Ga0306918_10159909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1671	Open in IMG/M
3300031744\|Ga0306918_11474040	Not Available	520	Open in IMG/M
3300031747\|Ga0318502_10666583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	628	Open in IMG/M
3300031768\|Ga0318509_10396709	Not Available	772	Open in IMG/M
3300031781\|Ga0318547_10886501	Not Available	557	Open in IMG/M
3300031793\|Ga0318548_10551598	Not Available	562	Open in IMG/M
3300031805\|Ga0318497_10842610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa palsarum	514	Open in IMG/M
3300031854\|Ga0310904_11084509	Not Available	573	Open in IMG/M
3300031858\|Ga0310892_11038504	Not Available	579	Open in IMG/M
3300031858\|Ga0310892_11361520	Not Available	509	Open in IMG/M
3300031908\|Ga0310900_11639122	Not Available	545	Open in IMG/M
3300031910\|Ga0306923_10356283	Not Available	1668	Open in IMG/M
3300031949\|Ga0214473_10160292	All Organisms → cellular organisms → Bacteria	2615	Open in IMG/M
3300032122\|Ga0310895_10618341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	557	Open in IMG/M
3300032205\|Ga0307472_100482090	Not Available	1064	Open in IMG/M
3300033289\|Ga0310914_10315439	Not Available	1411	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.09%
Host-Associated	Host-Associated	20.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.27%
Plants	Host-Associated → Plants	20.00%
Aquatic	Environmental → Aquatic	11.82%
Human	Host-Associated → Human	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.91%
Freshwater	Environmental → Aquatic → Freshwater	9.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.18%
Marine	Environmental → Aquatic → Marine	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%
Cave	Environmental → Terrestrial → Cave	0.91%
Digestive System	Host-Associated → Human → Digestive System	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.64%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Sand	Environmental → Terrestrial → Soil → Sand	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.91%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.64%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.91%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.73%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.91%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental	Open in IMG/M
3300031368	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-230	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100301031	3300000567	Peatlands Soil	GPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLATK*
AF_2010_repII_A1DRAFT_100357783	3300000597	Forest Soil	MGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPIMWWLATK*
JGI11643J11755_117608242	3300000787	Soil	VEIQVPTNPGWVRWAGGFVLGIAIGPWLASEGWIKEQPFIAGLAAAFTLSGLALLYGVVSGEYAGAAWFIWMPIVILAVLAPTMWWLATK*
AF_2010_repII_A001DRAFT_100187673	3300000793	Forest Soil	GGFVLGIAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIXLLAVLAPIMWWLATK*
JGI1027J12803_1052904951	3300000955	Soil	FLLMPYSMFQLSGDPGVPTNPGWVRWAGGFVLGIAIGPWLASEGWIKEQPFIAGLAAAFTLSGLALLYGVVSGEYAGAAWFIWMPIVILAVLAPTMWWLATK*
JGI24737J22298_102672112	3300001990	Corn Rhizosphere	FQLSGDPGVPTNPGWVRWAGGFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK*
JGI24751J29686_100814702	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	AGGFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK*
Ga0062593_1005825412	3300004114	Soil	VCPPIRDGCVGLGGFVLGIATGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPIMWWLATK*
Ga0062590_1002568003	3300004157	Soil	MPHSMFQLSGDPGAPANSGWVRWAGGFVLGISIGPWLASEGLVKEQPFIAGLASAFTLSGLALLYSVVSGEYAGAAWFIWMPILILSVLAPTMWWLANK*
Ga0063356_1016062031	3300004463	Arabidopsis Thaliana Rhizosphere	IGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPITWWLAIKD*
Ga0063356_1020861182	3300004463	Arabidopsis Thaliana Rhizosphere	LSEDPGAPTNSGWVRWAGEFVLGIAIGPWLASEGWVKEQPFIAGLAAAFTLSGFALIYSVVSGEYADVAWFIWMPIVMLAVLAPTMWWLATKD*
Ga0069718_152934212	3300004481	Sediment	MFQLSGDPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFLAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0062591_1027047601	3300004643	Soil	DPGAPTNSGWVRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0058862_111289382	3300004803	Host-Associated	VCQPTRDGCAGLEVFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK*
Ga0066388_1030164391	3300005332	Tropical Forest Soil	VRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSFLSGEYAGAAWFIWMPIVLLAVLALAMWWLVAK*
Ga0066388_1043053272	3300005332	Tropical Forest Soil	IGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYSGAAWFIWMPIVLLAVLAPAMWWLAAK*
Ga0066388_1057562542	3300005332	Tropical Forest Soil	NPGWVRWAGGFVLGIAIGPWLASEGWGKEQPFLAGLAAAFTLSGLALLYSFVSGEYAGAAWFIWMPIVILVVLAPTLWCLAIK*
Ga0066388_1083463752	3300005332	Tropical Forest Soil	GWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYTVVSGEYAGVAWFIWMPIVILAVLAPAMWWLATK*
Ga0070680_1019566702	3300005336	Corn Rhizosphere	VRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0070691_104576852	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	WLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0070681_114770772	3300005458	Corn Rhizosphere	IGFLMIPHSIFQLSEDPGAPTNSGWVRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFTWMPIVMLIVLAPTMWWLATKD*
Ga0070695_1018010131	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0070664_1012984641	3300005564	Corn Rhizosphere	MIPHSIFQLSEDPGAPTNSGWVRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0068854_1016279222	3300005578	Corn Rhizosphere	PGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0068859_1025081561	3300005617	Switchgrass Rhizosphere	WVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0066903_1013239671	3300005764	Tropical Forest Soil	IGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLGVLAPAMWWLAAK*
Ga0066903_1048436122	3300005764	Tropical Forest Soil	FVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSIVSGEYAGAAWFIWMPIVLLAVLAPAMWSLVAK*
Ga0068858_1024964371	3300005842	Switchgrass Rhizosphere	ANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0070712_1013860792	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	NQLGMGALGWRVCFWYAIGPWLASEGWVKEQPFISSRGSLCSVPASRSSIPVVSREYADAAWFIWTPIVILAVLAPTMWWLATKD*
Ga0075422_104988391	3300006196	Populus Rhizosphere	VPTNSGWVRWAGGFVVGIAIGPWLASLGWLKEQPFIAGLAAAFTLSGLALFYSVVSGEYAGAAWFIWMPILLLAVLASTIWWLANR*
Ga0097621_1014437071	3300006237	Miscanthus Rhizosphere	RWAGGFVLGTSIGPWLASEGLMKEQPFIAGLAAALTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK*
Ga0075021_111402991	3300006354	Watersheds	GGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWTPIVILAALAPTMWWLAAK*
Ga0075425_1017678332	3300006854	Populus Rhizosphere	WAGGFVLGTSIGPWLASEGFVKEQPFIAGLASAFTLSGLALLYSVVSGEYAGAAWFIWMPILILSVLAPTMWWLANK*
Ga0105240_119270851	3300009093	Corn Rhizosphere	RWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0105243_113345511	3300009148	Miscanthus Rhizosphere	TNSGWVRWAGGFVLGISIGPRLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0105092_100720022	3300009157	Freshwater Sediment	MPDSLFHLSGDPGVPSNPGWVRWAGAFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVLSGEYAGAAWFIWMPIVILAVLAPITWWLAIKD*
Ga0105104_100776234	3300009168	Freshwater Sediment	GIAIGPWLASEGWVKEQPFLAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0105241_117526991	3300009174	Corn Rhizosphere	LGIAIGPWLASEGWVREQPFIAGLAVAYTLSGLALLYSIVSGEYAGAAWFIWMPIVMLAVLAPTMWWLATKD*
Ga0105238_117188241	3300009551	Corn Rhizosphere	LSEDPGAPTNSGWVRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAVALTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0105063_10145651	3300009804	Groundwater Sand	DPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFILMPIVLLAVLAPTMWWLATK*
Ga0105066_11007411	3300009822	Groundwater Sand	NPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAVAYTLSSLALLYSVVSGEYAGAAWLIWMPIVILAVLAPAMWWLATKD*
Ga0126377_126810321	3300010362	Tropical Forest Soil	DALLQLSGDPGVPTNPGWVRWAGGFILGISLGPWLASEGWVKEQQPFIAGLAAAFTLSGLALLYGVISGEYGGAAWFIWMPIILLAALAAVLWWLATK*
Ga0126377_128072721	3300010362	Tropical Forest Soil	LQLSGDPGAPTNAGWVRWAGGFVLGIAIGPWLASEGWVKEQPFLAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILVALAPTLWWLATK*
Ga0105239_134734591	3300010375	Corn Rhizosphere	LSEDPGAPTNSGWVRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD*
Ga0134124_129928941	3300010397	Terrestrial Soil	SGDPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0134127_131465321	3300010399	Terrestrial Soil	RYCDRPRLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0134121_113276002	3300010401	Terrestrial Soil	VGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVVLAVLAPAMWWLVAK*
Ga0124844_10795363	3300010868	Tropical Forest Soil	PGVPTNPGWVRWAGGFVLGIAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSAVSGEYAGAAWFIWMPIVLLAVLAPIMWWLATK*
Ga0157289_101294541	3300012903	Soil	LLMPHSMFQLSGDPGVPTNPGWVRWAGGFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK*
Ga0157310_101857322	3300012916	Soil	GWVRWAGGFVLGTSIGPWLASEGFVKEQPFIAGLASAFTLSGLALLYSVVSGEYAGAAWFIWMPILLLAVLASTMWWLANK*
Ga0164298_100378951	3300012955	Soil	GIAVGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0164298_105986601	3300012955	Soil	YAMFQLSGDPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0164303_100696734	3300012957	Soil	RWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0164299_104909411	3300012958	Soil	YAMFQLSGDPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVGSGEYAGAAWFIWMPIAVLAVLAPAMWWLVAK*
Ga0164302_117132431	3300012961	Soil	LSGDPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGIAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0164304_110314191	3300012986	Soil	VRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0164307_101655722	3300012987	Soil	GWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0164305_109569221	3300012989	Soil	GDPGVPANSGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAVAYTLSGLALLYSVVSGEYAGAAWFIWLPIVILAVLAPTMWWSQSNNNSLVLNG*
Ga0157374_120408351	3300013296	Miscanthus Rhizosphere	AGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSAVSGEYVGAAWFIWMPIVLLAVLAPAMWWLAAK*
Ga0157378_111182062	3300013297	Miscanthus Rhizosphere	PGWVRWAGGFVLGIAIGPWLASLGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPALWWVATK*
Ga0137403_116225311	3300015264	Vadose Zone Soil	GGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0132257_1043418181	3300015373	Arabidopsis Rhizosphere	GVPASPGWVRWDGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK*
Ga0182032_111367451	3300016357	Soil	VPTNPGWVRWAGGFVLGIAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLFSVVSGEYAGAAWFIWTPIVLLAVLAPIMWWLATK
Ga0182032_115813131	3300016357	Soil	QLSGDPGVPANPSWVRWAGGFLLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLAAK
Ga0182034_100282456	3300016371	Soil	SSLFQLSGDPGAPSNPGWVRWAGGFVLGIAIGPWLASEGWVREHPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAMLAPIMWWLATRNR
Ga0187814_100270625	3300017932	Freshwater Sediment	IGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIAILAVLASTMWWLATRH
Ga0187854_104515281	3300017938	Peatland	QLSGDPGVPTNSGWVRWAGGFVLGIAIGPWLASEGWIKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLAAK
Ga0187777_100591113	3300017974	Tropical Peatland	WAGGYVLGISIGPWLAAEGWLKEQPFIAGLAAAFTLSGLALIYSAMSGEYGGDAWFIWMPIVILAALAPFMWWLASR
Ga0187777_110847792	3300017974	Tropical Peatland	NSGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGEAWFIWMPIAILAVLASTMWWLATRH
Ga0187815_100317665	3300018001	Freshwater Sediment	VPTNSGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSVLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLA
Ga0187805_104963262	3300018007	Freshwater Sediment	YSMFQLSGDPGVPTNSGWIRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSVLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLAIK
Ga0187805_105220741	3300018007	Freshwater Sediment	VLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIAILAVLASTMWWLATRH
Ga0187805_106378331	3300018007	Freshwater Sediment	RWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLATK
Ga0190272_122310021	3300018429	Soil	PANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLAAK
Ga0190271_138102131	3300018481	Soil	MPYAMFQLSGDPGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFLAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK
Ga0187893_105793271	3300019487	Microbial Mat On Rocks	VRWAGAFVLGIAIGPWLASEGWLKQQPFIASLAIAYTLAGLALLYSVFSGEYAGAAWFIWMPIAILTVLAPAMFWLATR
Ga0126371_103583162	3300021560	Tropical Forest Soil	SAMFQLSGDPGVPGNPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYSGAAWFIWMPIVLLAVLAPAMWWLAAK
Ga0247786_11610021	3300022883	Soil	SIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLAVLAPTMWWLATKD
Ga0247753_10087991	3300022892	Soil	VPTNPGWVRWAGGFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK
Ga0207685_107685751	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	GVPTNPGWVRWAGGFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK
Ga0207646_114857201	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	QLSGDPGVPTNSGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLAAK
Ga0207706_113583301	3300025933	Corn Rhizosphere	WAGGFVLGISISPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLAVLAPTMWWLATKD
Ga0207712_101298442	3300025961	Switchgrass Rhizosphere	MGFLLMPHSMFQLSGDPGAPANSGWVRWAGGFVLGTSIGPWLASEGFVKEQPFIAGLASAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTLWWLAIK
Ga0207639_110200012	3300026041	Corn Rhizosphere	PTNPGWVRWAGGFVLGTSIGPWLASEGLMKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTMWWLANK
Ga0256867_102917051	3300026535	Soil	LLMPHAMFQLSGDPGVPTNPAWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSAVSGEYAGAEWFIWMPIVVLAVLAPAMWWLATK
Ga0209593_101314301	3300027743	Freshwater Sediment	VGALGWIVLGIAIGPWLASEGWVKEQPFLAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK
Ga0247828_101207712	3300028587	Soil	VRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSAVSGEYAGAAWFIWMPIVILAVLAPTLWWLAIK
Ga0307428_10761501	3300031280	Salt Marsh	GIAIGPWLAAEGWGKEHPFLAGLAAGYTLAGLALLYGVVSGEYAGAAWFIWTPIVILAVLAPTMWWLAAKD
Ga0307429_11457911	3300031368	Salt Marsh	FLVGIAIGPWLAAEGWGKEHPFLAGLAAGYTLAAFALLYGVVSGEYAGAAWFIWTPIVILAVLAPTMWWLAAKD
Ga0307505_105441771	3300031455	Soil	FGFLLMPYAMFQLSGDPGVPTNPGWVRWAGGFVLGIAIGPWLASLGWVREQPFIAGVAAAFALSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTLWWLAIK
Ga0318573_103474011	3300031564	Soil	NPGWVRWAGGFVLGIAIGPWLASEGWVREHPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAMLAPIMWWLATRNR
Ga0310915_112692371	3300031573	Soil	LGIAMGPGLASEGWVKEQPFIAGLAAAYTLSGLALLFSVVSGEYAGAAWFIWTPIVLLAVLAPIMWWLATK
Ga0318500_107044681	3300031724	Soil	IAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLFSVVSGEYAGAAWFIWTPIVLLAVLAPIMWWLATK
Ga0307468_1000072651	3300031740	Hardwood Forest Soil	GAPTNLGWVRWAGGFVLGIAIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSAVSGEYAGAAWFIWMPIVILAVLAPTLWWLAIK
Ga0306918_101599093	3300031744	Soil	LMPSAMFQLSGDPGVPTNPGWVRWAGGFVLGIAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLFSVVSGEYAGAAWFIWTPIVLLAVLAPIMWWLATK
Ga0306918_114740401	3300031744	Soil	PWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLAAK
Ga0318502_106665831	3300031747	Soil	AGGFVLGIAIGPWLASEGWVREHPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAMLAPIMWWLATRNR
Ga0318509_103967091	3300031768	Soil	SSLFQLSGDPGAPSNPGWVRWAGGFVLGIAIGPWLASEGWVSEHPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAMLAPIMWWLATRNR
Ga0318547_108865011	3300031781	Soil	FQLSGDPGVPTNPGWVRWAGGFVLGIAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLFSVVSGEYAGAAWFIWTPIVFLAVLAPIMWWLATK
Ga0318548_105515981	3300031793	Soil	MYGIGFLLMPSAMFQLSGDPGVPTNPGWVRWAGGFVLGIAMGPWLASEGWVKEQPFIAGLAAAYTLSGLALLFSVVSGEYAGAAWFIWTPI
Ga0318497_108426101	3300031805	Soil	VLGIAIGPWLASEGWVREHPFIAGLAAAYTLSGLALLYSVVSGEYAGAAWFIWMPIVILAMLAPIMWWLATRNR
Ga0310904_110845091	3300031854	Soil	LMPDAMFQLSGDLGVPANPGWVRWAGGFVLGIAIGPWLASEGWVKEQPFLAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK
Ga0310892_110385041	3300031858	Soil	GGFVLGIAIGPWLASEGWVKEQPFIAGVTAAFTLSGLALLYSVGSGEYAGAAWFIWMPIAVLAVLAPAMWWLVAK
Ga0310892_113615201	3300031858	Soil	GPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK
Ga0310900_116391221	3300031908	Soil	GFVLGIAVGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLVAK
Ga0306923_103562831	3300031910	Soil	GFLLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLAAK
Ga0214473_101602921	3300031949	Soil	QLSEDPGAPANSGWLRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLAVLAPTMWWLATKD
Ga0310895_106183411	3300032122	Soil	HSIFQLSEDPGAPTNSGWVRWAGGFVLGISIGPWLASEGWVKEQPFIAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVMLIVLAPTMWWLATKD
Ga0307472_1004820902	3300032205	Hardwood Forest Soil	AGGLVLGIAIGPWLASEGWVKEQPFLAGLAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVILAVLAPTLWWLAIK
Ga0310914_103154392	3300033289	Soil	GVPANPSWVRWAGGFLLGIAIGPWLASEGWVKEQPFIAGVAAAFTLSGLALLYSVVSGEYAGAAWFIWMPIVLLAVLAPAMWWLAAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087538

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences