Metagenome / Metatranscriptome Family F087533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087533
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	45 residues
Representative Sequence	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRG
Number of Associated Samples	83
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.91 %
% of genes near scaffold ends (potentially truncated)	95.45 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.000 % of family members)
Environment Ontology (ENVO)	Unclassified (50.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 79.55% β-sheet: 0.00% Coil/Unstructured: 20.45%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08327	AHSA1	8.18
PF13924	Lipocalin_5	6.36
PF04392	ABC_sub_bind	4.55
PF11684	DUF3280	2.73
PF01255	Prenyltransf	2.73
PF03401	TctC	1.82
PF00654	Voltage_CLC	1.82
PF07883	Cupin_2	1.82
PF01650	Peptidase_C13	1.82
PF04780	DUF629	0.91
PF03354	TerL_ATPase	0.91
PF03976	PPK2	0.91
PF02922	CBM_48	0.91
PF01135	PCMT	0.91
PF13561	adh_short_C2	0.91
PF00126	HTH_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.55
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	2.73
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	1.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.82
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.91
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.91
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	0.91
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.91
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.09 %
Unclassified	root	N/A	30.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.36 %
Unclassified	root	N/A	30.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.64 %
Unclassified	root	N/A	30.91 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	4.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.00 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	4.55 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.45 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.64 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.82 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	4.55 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.82 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.91 %
Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	4.55 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.82 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.91 %
Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	4.55 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.82 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.91 %
Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	0.91 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201C3T6S	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
2170459016\|G1P06HT02GRHMI	All Organisms → cellular organisms → Bacteria → Proteobacteria	638	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1046476	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1003230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2301	Open in IMG/M
3300000956\|JGI10216J12902_102831072	Not Available	554	Open in IMG/M
3300001867\|JGI12627J18819_10150498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	948	Open in IMG/M
3300002914\|JGI25617J43924_10084384	Not Available	1149	Open in IMG/M
3300004643\|Ga0062591_100268174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1317	Open in IMG/M
3300005363\|Ga0008090_10184818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1099	Open in IMG/M
3300005363\|Ga0008090_15899311	Not Available	540	Open in IMG/M
3300005468\|Ga0070707_100795419	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	909	Open in IMG/M
3300005554\|Ga0066661_10340678	Not Available	919	Open in IMG/M
3300005713\|Ga0066905_100540547	Not Available	976	Open in IMG/M
3300005713\|Ga0066905_101235066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	669	Open in IMG/M
3300005764\|Ga0066903_100121527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3632	Open in IMG/M
3300005764\|Ga0066903_100274521	Not Available	2634	Open in IMG/M
3300005764\|Ga0066903_100972934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1547	Open in IMG/M
3300005764\|Ga0066903_104030213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300005764\|Ga0066903_104621244	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300005764\|Ga0066903_107210248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	575	Open in IMG/M
3300005764\|Ga0066903_107702216	Not Available	554	Open in IMG/M
3300006028\|Ga0070717_10193606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1777	Open in IMG/M
3300006175\|Ga0070712_101608194	Not Available	568	Open in IMG/M
3300009012\|Ga0066710_101956623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	873	Open in IMG/M
3300009792\|Ga0126374_10677242	Not Available	772	Open in IMG/M
3300009792\|Ga0126374_11545662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300010047\|Ga0126382_12498448	Not Available	504	Open in IMG/M
3300010358\|Ga0126370_12484474	Not Available	516	Open in IMG/M
3300010376\|Ga0126381_102196241	Not Available	794	Open in IMG/M
3300010376\|Ga0126381_103641386	Not Available	604	Open in IMG/M
3300010376\|Ga0126381_105133959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	501	Open in IMG/M
3300010868\|Ga0124844_1077134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300012362\|Ga0137361_10310408	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300012582\|Ga0137358_11073147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	515	Open in IMG/M
3300012923\|Ga0137359_11136504	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300012971\|Ga0126369_13614494	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300012989\|Ga0164305_10707862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	824	Open in IMG/M
3300014497\|Ga0182008_10487635	Not Available	676	Open in IMG/M
3300016319\|Ga0182033_11164756	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300016319\|Ga0182033_11841741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300016319\|Ga0182033_12085818	Not Available	517	Open in IMG/M
3300016341\|Ga0182035_10706622	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300016357\|Ga0182032_10330183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1214	Open in IMG/M
3300016357\|Ga0182032_10782889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	805	Open in IMG/M
3300016371\|Ga0182034_10858840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	779	Open in IMG/M
3300016387\|Ga0182040_10785977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	783	Open in IMG/M
3300016422\|Ga0182039_10373824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1203	Open in IMG/M
3300016422\|Ga0182039_11495239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300016445\|Ga0182038_11337541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	641	Open in IMG/M
3300020579\|Ga0210407_10688243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	793	Open in IMG/M
3300021478\|Ga0210402_11177031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	694	Open in IMG/M
3300021560\|Ga0126371_10783983	Not Available	1100	Open in IMG/M
3300021560\|Ga0126371_11825890	Not Available	729	Open in IMG/M
3300025905\|Ga0207685_10168890	Not Available	1005	Open in IMG/M
3300025915\|Ga0207693_10693946	Not Available	789	Open in IMG/M
3300025922\|Ga0207646_10831982	Not Available	821	Open in IMG/M
3300025939\|Ga0207665_10456174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300026304\|Ga0209240_1047919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1612	Open in IMG/M
3300026319\|Ga0209647_1011778	All Organisms → cellular organisms → Bacteria → Proteobacteria	5822	Open in IMG/M
3300026557\|Ga0179587_10751310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	643	Open in IMG/M
3300027326\|Ga0209731_1057013	Not Available	596	Open in IMG/M
3300027748\|Ga0209689_1090833	All Organisms → cellular organisms → Bacteria → Proteobacteria	1596	Open in IMG/M
3300027874\|Ga0209465_10034138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2402	Open in IMG/M
3300028047\|Ga0209526_10086026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2213	Open in IMG/M
3300028876\|Ga0307286_10011880	Not Available	2703	Open in IMG/M
3300031543\|Ga0318516_10178951	All Organisms → cellular organisms → Bacteria → Proteobacteria	1221	Open in IMG/M
3300031543\|Ga0318516_10594365	Not Available	632	Open in IMG/M
3300031545\|Ga0318541_10619316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	605	Open in IMG/M
3300031572\|Ga0318515_10372294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300031573\|Ga0310915_10037097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3082	Open in IMG/M
3300031640\|Ga0318555_10275365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300031668\|Ga0318542_10446052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	670	Open in IMG/M
3300031680\|Ga0318574_10892910	Not Available	520	Open in IMG/M
3300031713\|Ga0318496_10130597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1363	Open in IMG/M
3300031724\|Ga0318500_10391105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	690	Open in IMG/M
3300031744\|Ga0306918_10556087	Not Available	899	Open in IMG/M
3300031747\|Ga0318502_10935097	Not Available	528	Open in IMG/M
3300031768\|Ga0318509_10234528	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300031781\|Ga0318547_10731325	Not Available	615	Open in IMG/M
3300031796\|Ga0318576_10186064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	975	Open in IMG/M
3300031796\|Ga0318576_10358831	Not Available	689	Open in IMG/M
3300031819\|Ga0318568_10710175	Not Available	625	Open in IMG/M
3300031832\|Ga0318499_10150592	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300031835\|Ga0318517_10021783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2478	Open in IMG/M
3300031846\|Ga0318512_10137038	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1174	Open in IMG/M
3300031860\|Ga0318495_10094085	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M
3300031879\|Ga0306919_10124121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1852	Open in IMG/M
3300031879\|Ga0306919_10658079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	807	Open in IMG/M
3300031879\|Ga0306919_11387676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	530	Open in IMG/M
3300031890\|Ga0306925_11310463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300031890\|Ga0306925_11313114	Not Available	718	Open in IMG/M
3300031890\|Ga0306925_11447095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300031890\|Ga0306925_11750633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	597	Open in IMG/M
3300031896\|Ga0318551_10269053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	955	Open in IMG/M
3300031910\|Ga0306923_10227625	All Organisms → cellular organisms → Bacteria → Proteobacteria	2132	Open in IMG/M
3300031910\|Ga0306923_11356163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751	Open in IMG/M
3300031942\|Ga0310916_10687224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	866	Open in IMG/M
3300031945\|Ga0310913_10689592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300031945\|Ga0310913_10775808	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300032001\|Ga0306922_10224218	All Organisms → cellular organisms → Bacteria	2018	Open in IMG/M
3300032001\|Ga0306922_12252328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300032025\|Ga0318507_10095705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1233	Open in IMG/M
3300032025\|Ga0318507_10482863	Not Available	539	Open in IMG/M
3300032054\|Ga0318570_10282620	Not Available	754	Open in IMG/M
3300032063\|Ga0318504_10244750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	843	Open in IMG/M
3300032076\|Ga0306924_11631683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300032090\|Ga0318518_10549558	Not Available	590	Open in IMG/M
3300032261\|Ga0306920_101813593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	860	Open in IMG/M
3300033289\|Ga0310914_10949707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	759	Open in IMG/M
3300033290\|Ga0318519_10850430	Not Available	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	0.91%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.18%
Plants	Host-Associated → Plants	0.91%
Solid Waste	Engineered → Solid Waste	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%
Grass	Engineered → Solid Waste → Grass	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.09%
Loam	Environmental → Terrestrial → Soil → Loam	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_02745580	2170459007	Grass Soil	MRLLLYLIISWPLLSLICGPANAQTVAVFDFELIDTSLEG
2ZMR_01745420	2170459016	Switchgrass, Maize And Mischanthus Litter	LWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGVRPDEQE
AF_2010_repII_A100DRAFT_10464762	3300000655	Forest Soil	MIIPSYLVTLWALVFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQERLPV*
AP72_2010_repI_A100DRAFT_10032301	3300000837	Forest Soil	MIRSHLATLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQERL
JGI10216J12902_1028310722	3300000956	Soil	MRVPSYLVMLWALLLVVCGPTDAQTVAVFDFELIDTSLQG
JGI12627J18819_101504981	3300001867	Forest Soil	MTCLIPRSYLVTLWAVLFVSCGPAVAQSVAVFDFELIDTSLEGAIRGVRPDEQE
JGI25617J43924_100843844	3300002914	Grasslands Soil	MIIPSYLVTLWTLLIVSCGPTVAQSVAVFDFELIDASLKGIIRGTRPDE
Ga0062591_1002681741	3300004643	Soil	MRIPSYLAMSWALLLIICGPTVAQRVAVFDFELIDTSLQGE
Ga0008090_101848182	3300005363	Tropical Rainforest Soil	MIIPSYIVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAVRGVRPDEQERLARL
Ga0008090_158993111	3300005363	Tropical Rainforest Soil	MIIASYLVTLWALLFISCGPTVAQSVAVFDFELIDTSLEGA
Ga0070707_1007954192	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGA
Ga0066661_103406781	3300005554	Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELID
Ga0066905_1005405472	3300005713	Tropical Forest Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGA
Ga0066905_1012350663	3300005713	Tropical Forest Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARP
Ga0066903_1001215276	3300005764	Tropical Forest Soil	MIIASYLVTLWTLLFVSCGATIAQSVAVFDFELIDTSLEGAIRGARADEQSGLPV*
Ga0066903_1002745215	3300005764	Tropical Forest Soil	MLIASYPVTLWTLLFVSCGSTAAQPIAGFDFELIDTSVGGRCQGRSD*
Ga0066903_1009729342	3300005764	Tropical Forest Soil	MIIASYPVTLWALLFISCGPTVAQSVAVFDFELIDTSLEGAIRGAR
Ga0066903_1040302133	3300005764	Tropical Forest Soil	MMRSHLVTLWALLFLSCGPTVAQSIAVFDFELIDTS
Ga0066903_1046212444	3300005764	Tropical Forest Soil	MIIRSYLVTLWALLFISCGPTVAQSVAVFDFELIDTSLEGAIR
Ga0066903_1072102482	3300005764	Tropical Forest Soil	TLWALLFVSCGPTVAQSVAVFDFELIDTSLEGGYSGCSA*
Ga0066903_1077022162	3300005764	Tropical Forest Soil	MIIRSYVVTLCALLFVSCGPTVAQSVAVFDFELIDTSLEG
Ga0070717_101936063	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARL
Ga0070712_1016081941	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIVRLYLVTLWALLCVSCGPTVAQSVAVFDFELIDTSLEGAIRGA
Ga0066710_1019566233	3300009012	Grasslands Soil	MKTCRSTKSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGVR
Ga0126374_106772422	3300009792	Tropical Forest Soil	MIIRSCLVTLWALLFVSCGPTVAESVAVFDFELIDTSLEGAIRGARPDEQ
Ga0126374_115456622	3300009792	Tropical Forest Soil	MIIPSYLVTLWALLFVGYGPTVAQPVAVFDLELIDTSLEGAIRGARP
Ga0126382_124984482	3300010047	Tropical Forest Soil	MIIPSYLVTLWALLLVSCGPTVAQSVAVFDFELIDTSLEGAIRGAR
Ga0126370_124844741	3300010358	Tropical Forest Soil	MIIPAYLVTLWALLFVSCGPAVAQSVAVFDFELIDTSLEGAIR
Ga0126381_1021962411	3300010376	Tropical Forest Soil	MIIPSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLE
Ga0126381_1036413861	3300010376	Tropical Forest Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIE
Ga0126381_1051339591	3300010376	Tropical Forest Soil	MIIRSYLVTLWALLFVSCGPTVAQSIAVFDFELIDTSLE
Ga0124844_10771344	3300010868	Tropical Forest Soil	MIIRSYLVTLWALLFVSCGPTVAQSIAVFDFELIDTSL
Ga0137361_103104081	3300012362	Vadose Zone Soil	MIIRSHLATLWALLFVSCGPTVAQSVAVFDFELIDTSLEGA
Ga0137358_110731472	3300012582	Vadose Zone Soil	MLWALLVVTCGQTDAQTVAVFDFELIDTSLQGEISGSR
Ga0137359_111365042	3300012923	Vadose Zone Soil	MKTCRSTKSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGV
Ga0126369_136144941	3300012971	Tropical Forest Soil	MIIRSYLVTLWALLFVSCEPTVAQSIAVFDFELIDTSLEGAIR
Ga0164305_107078621	3300012989	Soil	MIIRSYLVTLWAVLFVSCGPTVADSVAVFDFELIDTSLEGAIRGARLDEQER
Ga0182008_104876352	3300014497	Rhizosphere	MIIRSHLVTLWALLFVSCGTSVAQSVAVFDFELIDTSLEGAI
Ga0182033_111647562	3300016319	Soil	MIIRSYLVTLWALLFLSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQ
Ga0182033_118417412	3300016319	Soil	MIIRSHLVTLWALLFVSCGTTVAQSVAVFDFELIDTSLEG
Ga0182033_120858181	3300016319	Soil	MIIRSYVVTLCTLLFVSCGTTVAQSVAVFDFELIDTSLEGAIRGARPDEQQR
Ga0182035_107066223	3300016341	Soil	MIIPSYLVTLWALVFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQERLARL
Ga0182032_103301831	3300016357	Soil	MIIRSYLVTLSALLFVSCGPTVAQSVAVFDFELIDTSL
Ga0182032_107828891	3300016357	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDISLEGA
Ga0182034_108588402	3300016371	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDI
Ga0182040_107859771	3300016387	Soil	MIIPSYLVTLWAVLFVSGGPTAAQSVAVFVFELIDTSLESAIRGARPDEQERLARLSDRLRQL
Ga0182039_103738242	3300016422	Soil	MIIPAYLAMLWALLFASCGPAVAQSVAVLDFELIDTS
Ga0182039_114952391	3300016422	Soil	MIIASYLVTLWALLFVGGGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQER
Ga0182038_113375412	3300016445	Soil	MTCLIPRSYLVTLWAVLFVSCGPAVAQSVAVCNFELIDTSLEGAIRGVRPD
Ga0210407_106882431	3300020579	Soil	MTCLIPRSYLVALWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRG
Ga0210402_111770312	3300021478	Soil	MTCLIPRSYLVTLWAVLFVSCGPAVAQSVAVFDFELIDTSLEGAIRGVRPDE
Ga0126371_107839832	3300021560	Tropical Forest Soil	MIIPSYIVTLWALLFLSCGPTVAQSVAVFDFELIDTSLEGAVRGVRPDEQERLARL
Ga0126371_118258901	3300021560	Tropical Forest Soil	MIIPSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTS
Ga0207685_101688901	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTCLIPRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQER
Ga0207693_106939461	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MIVRSYLVTLWALLCVSCGPTVAQSVAVFDFELIDTSLEG
Ga0207646_108319822	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSL
Ga0207665_104561741	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTCLIPRSYLVTLWAALFVSCGPAVAQSVAVFDFELIDTSLEGAIRG
Ga0209240_10479191	3300026304	Grasslands Soil	MIIPSYLVTLWTLLIVSCGPTVAQSVAVFDFELIDASLKGIIRGT
Ga0209647_10117784	3300026319	Grasslands Soil	MIIPSYLVTLWTLLIVSCGPTVAQSVAVFDFELIDASLKGIIRGTRPDEHRRNPAGTHDT
Ga0179587_107513102	3300026557	Vadose Zone Soil	MIVRLFLMTLWALLCVSCGPTVAQSVAVFDFELIDTSLEGAIRGVRLDEQE
Ga0209731_10570132	3300027326	Forest Soil	VRAYAAGSYLVTLWALLFVSCTPTVAQSVAVFDFELIDTSLEGAIRGVRPDEQE
Ga0209689_10908333	3300027748	Soil	MRVPSYLVMLWALLFVTCGPTDAQTVAVFDFELIDTSLEGAI
Ga0209465_100341385	3300027874	Tropical Forest Soil	MIIRSYLVTLWALLFVSCGSTVAQSVAVFDFELIDTSLEG
Ga0209526_100860261	3300028047	Forest Soil	MKTCLITRSYLVALWAVLFVSCGPAVAQSVAVFDFELIDTSLEGAIRGARLDEQE
Ga0307286_100118803	3300028876	Soil	MRIPSYLMVSWALLLLVCGPTLAQTVAVFDFELIDTSLEGEING
Ga0318516_101789513	3300031543	Soil	MIIPSYLVTLWALVFVSCGPTVAQSVAVFDFELID
Ga0318516_105943651	3300031543	Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAI
Ga0318541_106193161	3300031545	Soil	MIIRSYLVTLWALLFVSCGPTVAQSIAVFDFELIDTSLEGAIRGARPDE
Ga0318515_103722941	3300031572	Soil	MIIASYLVTLWALLFVGGGPTVAQSVAVFDFELIDTSLE
Ga0310915_100370971	3300031573	Soil	MIIRSYLVTLWALLLVSCGPTVAQSIAVFDFELIDTSLEGAIRGARPDEQER
Ga0318555_102753651	3300031640	Soil	MIIRSYLVTLWAVLFVGCGPTVAQSIAVFDFELIDTILEGAIRG
Ga0318542_104460522	3300031668	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDISLE
Ga0318574_108929101	3300031680	Soil	MIIPSYLVTLWALLFVSCGPTAAQSVAIFDFELIDTSVEGAIRG
Ga0318496_101305973	3300031713	Soil	MIIRSYLVTLWAVLFVGCGPTVAQSIAVFDFELIDTSLEGAIRGARPDEQ
Ga0318500_103911051	3300031724	Soil	MIIRSYLVMLWAVLFVSCGPTVAQSVAVFDFELID
Ga0306918_105560871	3300031744	Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGAAR
Ga0318502_109350972	3300031747	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELID
Ga0318509_102345281	3300031768	Soil	MIIRSYLVMLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAI
Ga0318547_107313251	3300031781	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDTSLE
Ga0318576_101860641	3300031796	Soil	MIIRSYLVTLWAVLFVGCGPTVAQSIAVFDFELIDTSLEGAIRGARPG
Ga0318576_103588311	3300031796	Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQERL
Ga0318568_107101751	3300031819	Soil	MIIPSYLVTLWALLFVSCGPTAAQSVAIFDFELIDTSVEGAI
Ga0318499_101505921	3300031832	Soil	MIIRSYLVMLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGA
Ga0318517_100217834	3300031835	Soil	MIIRSYLVTLWAVLFVGCGPTVAQSIAVFDFELIDTSLEGAIRGARP
Ga0318512_101370381	3300031846	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGA
Ga0318495_100940851	3300031860	Soil	MIIPSYLVTLWALVFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPDE
Ga0306919_101241213	3300031879	Soil	MIIRSYLVTLWAVLFVGCGPTVAQSIAVFDFELIDTSLEGAIRGARPDEQER
Ga0306919_106580792	3300031879	Soil	MIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLEGAIRG
Ga0306919_113876761	3300031879	Soil	MIIPSYLVTLWALLFVSCGPTVAQSVALFDFELIDTSLEGAIRGARP
Ga0306925_113104633	3300031890	Soil	MIIRSHLVTLWALLFVGCGPTVAQSVAVFDFELIDTSLE
Ga0306925_113131141	3300031890	Soil	MIIPAYLAMLWALLFASCGPAVAQSVAVLDFELIDTSLEGAIRGARADEQERLARQID
Ga0306925_114470951	3300031890	Soil	MIIPSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSLESAIRGARPDEQERLARPSE
Ga0306925_117506333	3300031890	Soil	MIIRSYLVTLWALLFVSCGPTVAQSIAVFDFELIDTSLEGAIRGARPD
Ga0318551_102690533	3300031896	Soil	MIIPSYLVTLWPLLFVSCGPTVAQSVAVFDFELIDTSLEGAI
Ga0306923_102276253	3300031910	Soil	MIIRSYLVMLWAVLFVSCGPTVAQSVAVFDFELIDTSL
Ga0306923_113561631	3300031910	Soil	MIIPSHLVTLWALLFISCGPTVAQSVAVFDFELIDTSLEGAIRGARPD
Ga0310916_106872241	3300031942	Soil	MIIPSYLVTLWPLLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARPD
Ga0310913_106895922	3300031945	Soil	MIIRSYLVTLWALLLVSCGPTVAQSIAVFDFELIDTSLEGAIRGARP
Ga0310913_107758081	3300031945	Soil	MIIRSYLVTLWALLFVSCGPTVAQSIAVFDFELIDTSLEGAIRGARP
Ga0306922_102242181	3300032001	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDISLEGAIRGAR
Ga0306922_122523281	3300032001	Soil	MKTCLITRSYLVALWALLFVGCGPTVAQSVAVFDFELIDT
Ga0318507_100957054	3300032025	Soil	MIIPSYVVTLWALLFASCGPTVAQSVAVFDFELIDTS
Ga0318507_104828631	3300032025	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDIS
Ga0318570_102826201	3300032054	Soil	SGPTMIIRSYLVTLWALLFVSCGPTVAQSVAVFDFELIDTSL
Ga0318504_102447501	3300032063	Soil	MIIPSHLVTLWALLFISCGPTVAQSVAVFDFELIDTSLEGAIRGARPDEQ
Ga0306924_116316833	3300032076	Soil	MIIRSHLVTLWALLFVSCGTTVAQSVAVFDFELIDTSL
Ga0318518_105495582	3300032090	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDISLEGAIRG
Ga0306920_1018135932	3300032261	Soil	MTCLIPRSYLVTLCAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGVRP
Ga0310914_109497072	3300033289	Soil	MIIRSYLVMLWAVLFVSCGPTVAQSVAVFDFELIDTSLEGAIRGARLDE
Ga0318519_108504301	3300033290	Soil	MIIRSYLVTLWAVLFVSCGPTVAQSVAVFDFELIDISLEGAIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences