Metagenome / Metatranscriptome Family F087529

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087529
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	91 residues
Representative Sequence	VTELKSWVKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVATLETRGSPHLGTIDNRLTVLESQTKANKDSIERIVDVMTRKLNINP
Number of Associated Samples	74
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.82 %
% of genes near scaffold ends (potentially truncated)	19.09 %
% of genes from short scaffolds (< 2000 bps)	73.64 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.818 % of family members)
Environment Ontology (ENVO)	Unclassified (44.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.34% β-sheet: 0.00% Coil/Unstructured: 29.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01520	Amidase_3	20.00
PF00182	Glyco_hydro_19	4.55
PF09374	PG_binding_3	3.64
PF12236	Head-tail_con	3.64
PF00959	Phage_lysozyme	2.73
PF13884	Peptidase_S74	2.73
PF12844	HTH_19	2.73
PF03237	Terminase_6N	1.82
PF01464	SLT	0.91
PF14301	DUF4376	0.91
PF00782	DSPc	0.91
PF10263	SprT-like	0.91
PF13683	rve_3	0.91
PF13361	UvrD_C	0.91
PF05838	Glyco_hydro_108	0.91
PF01636	APH	0.91
PF10546	P63C	0.91
PF00496	SBP_bac_5	0.91
PF07409	GP46	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	20.00
COG3179	Chitinase, GH19 family	Carbohydrate transport and metabolism [G]	4.55
COG3979	Chitodextrinase	Carbohydrate transport and metabolism [G]	4.55
COG3926	Lysozyme family protein	General function prediction only [R]	0.91
COG4381	Mu-like prophage protein gp46	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.91 %
Unclassified	root	N/A	29.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.27 %
Unclassified	root	N/A	29.09 %
Viruses	superkingdom	All Organisms → Viruses	3.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.27 %
Unclassified	root	N/A	29.09 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.73 %
Unclassified	root	N/A	29.09 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.91 %
Unclassified	root	N/A	29.09 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.73 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	29.09 %
Unclassified	root	N/A	29.09 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.73 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	20.91 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.82 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.91 %
Desulfovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales	0.91 %
Thermomicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	20.00 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.82 %
Ochrobactrum phage vB_OspP_OH	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH	0.91 %
Desulfovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae	0.91 %
unclassified Thermomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.09 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.82 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.91 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.91 %
Desulfovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	0.91 %
Ochrobactrum phage vB_OspP_OH	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.09 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1.82 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.82 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.82 %
Thermomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	0.91 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.91 %
Desulfovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	0.91 %
Ochrobactrum phage vB_OspP_OH	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_107217	Not Available	609	Open in IMG/M
3300002126\|JGI24035J26624_1025575	Not Available	634	Open in IMG/M
3300002244\|JGI24742J22300_10001601	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Desulfovibrio	3598	Open in IMG/M
3300004156\|Ga0062589_102373486	Not Available	546	Open in IMG/M
3300004157\|Ga0062590_100891242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	831	Open in IMG/M
3300005093\|Ga0062594_102745951	Not Available	546	Open in IMG/M
3300005163\|Ga0066823_10016491	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300005165\|Ga0066869_10005749	All Organisms → cellular organisms → Bacteria	1555	Open in IMG/M
3300005169\|Ga0066810_10094938	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300005169\|Ga0066810_10190904	Not Available	510	Open in IMG/M
3300005356\|Ga0070674_100004280	All Organisms → cellular organisms → Bacteria → Proteobacteria	8121	Open in IMG/M
3300005364\|Ga0070673_101839818	Not Available	574	Open in IMG/M
3300005456\|Ga0070678_100345231	All Organisms → cellular organisms → Bacteria → Proteobacteria	1278	Open in IMG/M
3300005456\|Ga0070678_102117378	Not Available	533	Open in IMG/M
3300005526\|Ga0073909_10006759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3410	Open in IMG/M
3300005526\|Ga0073909_10133291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1019	Open in IMG/M
3300005526\|Ga0073909_10323804	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300005615\|Ga0070702_101835867	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005618\|Ga0068864_100629302	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005841\|Ga0068863_101671317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	646	Open in IMG/M
3300006050\|Ga0075028_100000945	Not Available	10422	Open in IMG/M
3300006050\|Ga0075028_100970668	Not Available	527	Open in IMG/M
3300006175\|Ga0070712_101792694	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300006358\|Ga0068871_100849541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	844	Open in IMG/M
3300006953\|Ga0074063_10083190	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300006953\|Ga0074063_13515617	All Organisms → cellular organisms → Bacteria	3438	Open in IMG/M
3300009098\|Ga0105245_10894027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300009148\|Ga0105243_12097315	Not Available	601	Open in IMG/M
3300009168\|Ga0105104_10000174	All Organisms → cellular organisms → Bacteria	47327	Open in IMG/M
3300009177\|Ga0105248_10122397	All Organisms → cellular organisms → Bacteria → Proteobacteria	2935	Open in IMG/M
3300009177\|Ga0105248_10501328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1369	Open in IMG/M
3300009610\|Ga0105340_1001833	All Organisms → cellular organisms → Bacteria	9343	Open in IMG/M
3300010371\|Ga0134125_12450146	Not Available	567	Open in IMG/M
3300010397\|Ga0134124_11392077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300010401\|Ga0134121_11529711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	684	Open in IMG/M
3300011438\|Ga0137451_1058162	All Organisms → cellular organisms → Bacteria → Proteobacteria	1140	Open in IMG/M
3300011442\|Ga0137437_1000131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	19478	Open in IMG/M
3300012212\|Ga0150985_118010559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	789	Open in IMG/M
3300012672\|Ga0137317_1032198	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300013296\|Ga0157374_10880924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	912	Open in IMG/M
3300013296\|Ga0157374_12953071	Not Available	502	Open in IMG/M
3300013306\|Ga0163162_10723668	Not Available	1116	Open in IMG/M
3300013308\|Ga0157375_12240788	Not Available	651	Open in IMG/M
3300014325\|Ga0163163_10609569	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300014326\|Ga0157380_10149715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2016	Open in IMG/M
3300014969\|Ga0157376_10895571	Not Available	905	Open in IMG/M
3300014969\|Ga0157376_11060846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	835	Open in IMG/M
3300014969\|Ga0157376_11834351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	643	Open in IMG/M
3300015371\|Ga0132258_10094653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7017	Open in IMG/M
3300015371\|Ga0132258_12659884	Not Available	1249	Open in IMG/M
3300015371\|Ga0132258_13919290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1011	Open in IMG/M
3300015373\|Ga0132257_100194787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2398	Open in IMG/M
3300015374\|Ga0132255_104196296	Not Available	611	Open in IMG/M
3300017792\|Ga0163161_10894094	Not Available	752	Open in IMG/M
3300018083\|Ga0184628_10000865	All Organisms → cellular organisms → Bacteria → Proteobacteria	15473	Open in IMG/M
3300018083\|Ga0184628_10124141	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1336	Open in IMG/M
3300018476\|Ga0190274_10003038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9948	Open in IMG/M
3300020020\|Ga0193738_1000132	All Organisms → cellular organisms → Bacteria	48195	Open in IMG/M
3300020020\|Ga0193738_1026907	All Organisms → Viruses → Predicted Viral	1797	Open in IMG/M
3300021082\|Ga0210380_10342298	Not Available	682	Open in IMG/M
3300021403\|Ga0210397_10522357	Not Available	901	Open in IMG/M
3300021403\|Ga0210397_11493823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	525	Open in IMG/M
3300021475\|Ga0210392_10001753	All Organisms → cellular organisms → Bacteria	11276	Open in IMG/M
3300021475\|Ga0210392_10001921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10721	Open in IMG/M
3300021475\|Ga0210392_10002369	All Organisms → cellular organisms → Bacteria	9662	Open in IMG/M
3300021475\|Ga0210392_10268883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1213	Open in IMG/M
3300021475\|Ga0210392_10780019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	713	Open in IMG/M
3300021475\|Ga0210392_10901805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	661	Open in IMG/M
3300021475\|Ga0210392_11006360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	624	Open in IMG/M
3300021478\|Ga0210402_10011544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7627	Open in IMG/M
3300021478\|Ga0210402_10018287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6011	Open in IMG/M
3300021478\|Ga0210402_10059888	Not Available	3346	Open in IMG/M
3300021478\|Ga0210402_10320923	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300025315\|Ga0207697_10003947	All Organisms → cellular organisms → Bacteria	7213	Open in IMG/M
3300025315\|Ga0207697_10152074	All Organisms → cellular organisms → Bacteria → Acidobacteria	1007	Open in IMG/M
3300025315\|Ga0207697_10185920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	912	Open in IMG/M
3300025915\|Ga0207693_10127460	All Organisms → cellular organisms → Bacteria	2001	Open in IMG/M
3300025930\|Ga0207701_11038109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	681	Open in IMG/M
3300025935\|Ga0207709_10198691	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH	1430	Open in IMG/M
3300025937\|Ga0207669_10391414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1086	Open in IMG/M
3300025941\|Ga0207711_10013659	All Organisms → cellular organisms → Bacteria → Proteobacteria	6742	Open in IMG/M
3300026089\|Ga0207648_11336968	Not Available	673	Open in IMG/M
3300026089\|Ga0207648_11387601	Not Available	660	Open in IMG/M
3300026121\|Ga0207683_10289128	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1499	Open in IMG/M
3300026121\|Ga0207683_10970972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobiales → unclassified Thermomicrobiales → Thermomicrobiales bacterium	789	Open in IMG/M
3300026121\|Ga0207683_10994407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	779	Open in IMG/M
3300027288\|Ga0208525_1002561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1823	Open in IMG/M
3300027310\|Ga0207983_1009371	Not Available	1106	Open in IMG/M
3300027523\|Ga0208890_1059855	Not Available	613	Open in IMG/M
3300027743\|Ga0209593_10000084	All Organisms → cellular organisms → Bacteria	47331	Open in IMG/M
3300027821\|Ga0209811_10006432	All Organisms → cellular organisms → Bacteria	3774	Open in IMG/M
3300028712\|Ga0307285_10061224	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300028802\|Ga0307503_10000076	All Organisms → cellular organisms → Bacteria → Proteobacteria	57702	Open in IMG/M
3300031057\|Ga0170834_101513586	All Organisms → cellular organisms → Bacteria → Proteobacteria	1027	Open in IMG/M
3300031057\|Ga0170834_108470217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300031057\|Ga0170834_111233950	Not Available	616	Open in IMG/M
3300031057\|Ga0170834_111287126	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300031057\|Ga0170834_111865729	Not Available	608	Open in IMG/M
3300031122\|Ga0170822_14366664	Not Available	575	Open in IMG/M
3300031170\|Ga0307498_10000008	All Organisms → cellular organisms → Bacteria	20620	Open in IMG/M
3300031170\|Ga0307498_10002524	All Organisms → cellular organisms → Bacteria	2919	Open in IMG/M
3300031170\|Ga0307498_10432090	Not Available	524	Open in IMG/M
3300031198\|Ga0307500_10096141	Not Available	789	Open in IMG/M
3300031231\|Ga0170824_102210836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	656	Open in IMG/M
3300031231\|Ga0170824_103304043	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300031474\|Ga0170818_105840891	Not Available	545	Open in IMG/M
3300031718\|Ga0307474_10678604	Not Available	813	Open in IMG/M
3300031753\|Ga0307477_10583365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	755	Open in IMG/M
3300031823\|Ga0307478_11134328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	652	Open in IMG/M
3300031962\|Ga0307479_11517405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.64%
Host-Associated	Host-Associated	36.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.64%
Plants	Host-Associated → Plants	36.36%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.55%
Sediment	Environmental → Aquatic → Sediment	7.27%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Roots	Host-Associated → Plants → Roots	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.45%
Soil	Host-Associated → Plants → Rhizoplane → Soil	4.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.73%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.18%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	4.55%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300002126	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Host-Associated	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012672	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT266_2	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_01669750	2199352025	Soil	MVETAKTWLRDNSTLVYFLFAQLIGIGAAVLSMTSYMVRLEARVSTLEIRGSPHLAEINNRLTTTEKETDANKHRIDRIVDVLTRELGKTVPPK
JGI24035J26624_10255751	3300002126	Corn, Switchgrass And Miscanthus Rhizosphere	WLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKLEARVQTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR*
JGI24742J22300_100016014	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	MVEQAKTWLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKXXARVXTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR*
Ga0062589_1023734861	3300004156	Soil	MMTIARSWLKENSTLVYFLIAQAVGIGAAVLSMTAYMVRLETRVLTLETRGSSHLAEINNRLTVTEKETDANKARIERMTDIMTRNLNINPK*
Ga0062590_1008912422	3300004157	Soil	ARSWLKENSTLVYFLIAQAVGIGAAVLSMTAYMVRLETRVLTLETRGSSHLAEINNRLTVTEKETDANKARIERMTDIMTRNLNINPK*
Ga0062594_1027459511	3300005093	Soil	VTEFKSWFQNNQSLVLFLAAQAIAIGAVAASLIAYSAGLEARVRTLEVRGSPHLERVDSRLTVLESQTQNNKASIERIVDVLTREL
Ga0066823_100164911	3300005163	Soil	YFLVAQAIAIGAAVISIVAYSVRLETRVNTLEVRGSPHLSEINNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPAK*
Ga0066869_100057492	3300005165	Soil	MMIDKVRSWVAENQTLIYFLVAQAIAIGAAVISIVAYSVRLETRVNTLEVRGSPHLSEINNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPAK*
Ga0066810_100949382	3300005169	Soil	MTSVRSWFHENQALVYFLVAQGIAIGAAVLSITAYMVKLETRVSTLEIRGSPHLVTVDSRLTVLESQTKANKGSIDRIVDVMTKRLNINP*
Ga0066810_101909041	3300005169	Soil	MMTSVKSWFHENQALVYFLVAQGVALGAAVLSITAYMVDLEARVMILEVRGSPHLSVVDNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPIK*
Ga0070674_1000042806	3300005356	Miscanthus Rhizosphere	MVEQAKTWLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKLEARVQTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR*
Ga0070673_1018398181	3300005364	Switchgrass Rhizosphere	ELKGWIKENSTLVYFLIAQAVAIGAAVLSMTAYMVRLETRVALLESRGSSHLEAINNRLTVTEKETSANSQRLDRIVDVMTRKLNINP*
Ga0070678_1003452312	3300005456	Miscanthus Rhizosphere	MMTVARSWLKENSTLVYFLVAQAVGIGAAVLSITAYMVRLETRVVTLETRGSSHLAEINNRLTVTEKETGANSARIERMTDIMTRNLNINPK*
Ga0070678_1021173781	3300005456	Miscanthus Rhizosphere	MTELRSWFKENSTLVYFLIAQAVGIGAAVLSMTAYMVRLETRVLTLETRGSSHLAEINNRLTVTEKETDANKARIERMTDIMTRNLNINPK*
Ga0073909_100067592	3300005526	Surface Soil	MTELKSWVKENATLVYFLIAQAIAIGAVGTSIIAYAVRLESRVNTLEVRGSPHLAVIDNRLTVLESQTKENKERLERIVDVMTKRLNINP*
Ga0073909_101332912	3300005526	Surface Soil	MTELKQWVRANATLVYFLIAQAIGIGTAVFSLTVYMTNLESRVSTLEIRGSPHLAEINNRLTVTEKETEANRARVERIVDIMTRKLNLPVQ*
Ga0073909_103238042	3300005526	Surface Soil	MMTRVRSWVSENQTLIYFLVAQAIAIGAAVISIVAYSVRLETRVNTLEVRGSPHLSEINNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPAK*
Ga0070702_1018358672	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LYFLVAQGIGIGAAVLSMTAYMVRLETRVLALETRGSSHLGEINNRLTVTEKETAANSARIERMTDIMTRNLSINPK*
Ga0068864_1006293022	3300005618	Switchgrass Rhizosphere	MMTVAQSWIKENSTLLYFLVAQGIGIGAAVLSMTAYMVRLETRVLALETRGSSHLGEINNRLTVTEKETAANSARIERMTDIMTRNLSINPK*
Ga0068863_1016713172	3300005841	Switchgrass Rhizosphere	AGQSWIKENSTLLYFLLAQGVGIGAAVLSMTAYMVRLETRVEALETRGSSHLGEINNRLTVTEKETAANSARIERMTDIMTRNLSINPK*
Ga0075028_1000009458	3300006050	Watersheds	MVEGARSWLKDNATLVYFLIGQAIFIGGGAFSLTTYMTQLEARVSTLETRGSPHLNVVDSRLTVLESKTTDNKEAIDRIVGIMVKELHVSPTR*
Ga0075028_1009706681	3300006050	Watersheds	STLVYFLIGQAILVAGGAFSLTTYMVQLEERVKTLEVRGSPHLNVIDSRLTVLESKTSDNKEAIDRIVAVMIKELHVSPTR*
Ga0070712_1017926941	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SWLKDNATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVNTLEVRGSPHLADINTRLTVLEGLTKNNKDSIDRVVDVMTKELHVLPRRDP*
Ga0068871_1008495412	3300006358	Miscanthus Rhizosphere	MMTVARSWLKENSTLVYFLIAQAIGIGAAVLSMTAYMVRLETRVVTLETRGSSHLAEINNRLTVTEKETDANKARIERMTDIMTRNLNINPK*
Ga0074063_100831902	3300006953	Soil	MVQEAKTWFRDNQTLVYFLVGQFIAVCAAVLSMTAYSVRLETRVNTLETRGSPHLSTIDNRLTVLESQTKDNKEAIDRVVEI
Ga0074063_135156176	3300006953	Soil	MIDKVRSWVAENQTLIYFLVAQAIAIGAAVISIVAYSVRLETRVNTLEVRGSPHLSEINNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPAK*
Ga0105245_108940271	3300009098	Miscanthus Rhizosphere	MMIDTRSAKSWFQDNQTLVYFLLAQAIAIGTVAVSIIAYSVRLETRVNILEVRGSPHLAEINNRLTVLESQTQNNKQSIDRIVEIMTRELMK*
Ga0105243_120973152	3300009148	Miscanthus Rhizosphere	VTEIKTWFGQNSTLAYFLFAQFLAIGAAVLSMTAYMVKLEGRVLTLETRGSSHLAEINNRLTVTEKETDANRARLERMVDIMTKNLNINPR*
Ga0105104_1000017416	3300009168	Freshwater Sediment	MMTVVNSWFKENQTLVYFLIVQGIAIITVCASILAYSVRLETRVNTLEVRGSPHLERVDGRLTVLEAATETNKQSIDRIVNVMTRKLNINP*
Ga0105248_101223972	3300009177	Switchgrass Rhizosphere	MTELRSWLRDNSTLVYFLVAQAIAIGAVVVSIIAYSVRLESRVTTLEVRGSPHLTVVDNRLTVLESQTKENKERLERIVDVMTKRLNINP*
Ga0105248_105013282	3300009177	Switchgrass Rhizosphere	MTELKSWLRDNSTLMYFLVAQAIAIGAVVVSIIAYSVKLESRVTTLEVRGSPHLATIDQRLTVLESKTATNKESVDRIVDVMTKRLNINP*
Ga0105340_100183312	3300009610	Soil	MVEQAKTWLKDNSTLVYFLLAQAIGIGAAVLSMTAYMVKLEARVVTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR*
Ga0134125_124501462	3300010371	Terrestrial Soil	MGGQMRSWFKDNQTLVFFLIAQAVAIGAAVLSMSAYMVRLETRVHTMEVRGSPHLAEINTRLTVLEGQTKTNKDSIERISEIMLRELPIKRDTK*
Ga0134124_113920772	3300010397	Terrestrial Soil	MTELRSWFKENSTLVYFLIAQAVGIGAAVLSMTAYMVRLETRVLTLETRGSSHLQEINNRLTVTEKETEANRLRVERIVDVMTRELGKPVK*
Ga0134121_115297112	3300010401	Terrestrial Soil	MTSVRSWFQDNHTLVYFLVAQAIAIGTVAVSIIAYSVRLETRVNILEVRGSPHLAEINNRLTVLESQTQNNKQSIDRIVEIMTRELMK*
Ga0137451_10581622	3300011438	Soil	MVEQAKTWLKDNSTLVYFLLAQAIGIGAAVLSMTAYMVKLEARVQTLETRGSPHLAVVDNRLTVLESTSNENKRRLDNVISIMTKELHISPAR*
Ga0137437_100013118	3300011442	Soil	MMVEQAKSWLRENSTLLYFLLAQAIGIGAAVLSMTAYMVKLESRVATLETRGSSHLAEINNRLTVTEKETDANKARLDKMTDIMTRNLSINPSVTPPR*
Ga0150985_1180105592	3300012212	Avena Fatua Rhizosphere	MTELRSWIKDNSTLVYFLIAQAIAICTVGVSVISYMVRLETRVNTLEVRGSPHLSEINNRLTVTEKETEANKERVDRIVEVMTRELGKPIK*
Ga0137317_10321982	3300012672	Soil	MVEQAKTWLKDNSTLVYFLLAQAIGIGAAVLSMTAYMVKLEARVVTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIM
Ga0157374_108809242	3300013296	Miscanthus Rhizosphere	VTELKTWVKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVATLETRGSPHLNIIDNRLVVLESQAKKNEERLERIVDVMTKKLNINP*
Ga0157374_129530712	3300013296	Miscanthus Rhizosphere	MTELKGWIKENSTLVYFLIAQAVAIGAAVLSMTAYMVRLETRVALLESRGSSHLEAINNRLTVTEKETSANSQRLDRIVDVMTRKLNINP*
Ga0163162_107236681	3300013306	Switchgrass Rhizosphere	NRKMVEQAKTWLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKLEARVQTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR*
Ga0157375_122407882	3300013308	Miscanthus Rhizosphere	MTELKGWIKENSTLVYFLIAQAIAIGAAVLSMTAYMVRLETRVALLESRGSSHLEAINNRLTVTEKETSANSQRLDRIVDVMTRKLNINP*
Ga0163163_106095692	3300014325	Switchgrass Rhizosphere	MMTVAQSWIKENSTLLYFLVAQGIGIGAAVLSMTAYMVRFEARVLALETRGSSHLGEINNRLTVTEKETAANSARIERMTDIMTRNLSINPK*
Ga0157380_101497152	3300014326	Switchgrass Rhizosphere	MVEQAKTWLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKLEARVVTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR*
Ga0157376_108955712	3300014969	Miscanthus Rhizosphere	MTELRSWLRDNQTLVGFLVAQTLAAAAVAISIITYSVKLEGRVTTLEVRGSPHLATIDQRLTVLESKTATNKESVDRIVDVMTKRLNINP*
Ga0157376_110608462	3300014969	Miscanthus Rhizosphere	QGQAGSAAVVTELKTWVKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVATLETRGSPHLNIIDNRLVVLESQAKKNEERLERIVDVMTKKLNINP*
Ga0157376_118343512	3300014969	Miscanthus Rhizosphere	MTQLKGWVRENSTLVYFLIAQAIAIGTVGVSVIVYMTKLEQRVALLESRRSSHLEAINNRLTVTEKETAANQQRLDRIVDVMTRKLNINP*
Ga0132258_100946539	3300015371	Arabidopsis Rhizosphere	MMTIARSWLKENSTLVYFLIAQAIAGGAAVLSITAYMVRLETRVHTLETRGSPHLAEINNRLTVLESTTRDNKLRLEKIVDVMTRELHIGPVR*
Ga0132258_126598845	3300015371	Arabidopsis Rhizosphere	MVDQLKSWFKENSTLVYFLIAQTVALIAAGASLLSYMVRLETRVATLETRGSPHLGTIDNRLTVLESRTENNKESIDRIVTTLTRDLGKFKLQSDDDRPKP*
Ga0132258_139192902	3300015371	Arabidopsis Rhizosphere	MVNSAKSWIKENSTLVYFLIAQFVGVGAAVLSMTAYMVKLEARVHTLETRGSSHLAEINNRLTVTEKETQANNDRIAKITDIMTRNLSINPGLPK*
Ga0132257_1001947873	3300015373	Arabidopsis Rhizosphere	MVTEMKTWLKENQTLVYFLIAQAIAIGAAVLSMTAYMVRLETRVATLETRGSPHLSTIDNRLTVLESHTKANKDSIERIVDVMTKRLNVNP*
Ga0132255_1041962961	3300015374	Arabidopsis Rhizosphere	MIDSARSWFKENQTLIYFLIAQAIAIGAMLLSMIEYSVKLETRVATLETRGSPHLNEINNRLTVLESKTSDNKEAIDRIVAVMIKELHVMPQRDK*
Ga0163161_108940943	3300017792	Switchgrass Rhizosphere	MTELRSWFKENSTLVYFLIAQAVGIGAAVLSMTAYMVRLETRVLTLETRGSSHLAEINNRLTVTEKETDANKARIERMTDIMTRNLNINPK
Ga0184628_1000086513	3300018083	Groundwater Sediment	MVEQAKTWLKDNSTLVYFLLAQAIGIGAAVLSMTAYMVKLEARVVTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR
Ga0184628_101241411	3300018083	Groundwater Sediment	MIDKVRSWFQDNQGLVYFLVAQATAGVVAGASVIAYSVNLENRVTTLEVRGSPHLTIVDNRLTVLEKQTEANKQSIDRIVDVMTKNLS
Ga0190274_100030389	3300018476	Soil	MDAVKSWFHQNQALVYFLIAQATAILFAVGSIIAYSAQLETRVHTMEIRGSPHLAVIDNRIAVLEAQIKENAARIDRVVEVMTRELNKPRQ
Ga0193738_100013222	3300020020	Soil	MIAPTKSWFNENQALVYFLVAQTIAIGAAVISIVAYSVRLETRVSTLEVRGSPHLERIDGRLTVLEGVAVNTKASIDRIVDIMTRELNKPPK
Ga0193738_10269073	3300020020	Soil	MTEQVKSWLKNNATLVYFLVAQAFGIGTAVLSITAYMTKLESRVNILETRGSPRLTTVDHRLSVLESQTQANKASLERVIDVMTKRLNP
Ga0210380_103422981	3300021082	Groundwater Sediment	MMVEQARGWLRENSTLVYFLIAQFIGIGAAGISVVSYMTKLEGRVATLETRGSPHLGTIDNRLTVLESQTKENKERLERIVDVMTKRLNINP
Ga0210397_105223573	3300021403	Soil	MMTTARSWLKENQTLVYFLIAQGIAIGATVLSMTAYMVRLETRVNTLEVRGSPHLGVIDNRLTVLESKTTDNKEAIDRIVGVMTKELHIQPQRDK
Ga0210397_114938231	3300021403	Soil	MRAWLTQNQTLVIFLVVQALAIVTYSVRLETRVSTLEVRGSPHLTVIDNRLTVLESQTKSNKESIERVVDVMTRGLSK
Ga0210392_1000175313	3300021475	Soil	MLGTMTELREWVKSNSALVYFLFAQAVALISGGAWALSYFNTLENRVNTLETRGSPHLNIIDNRLTVLESQTKENKERLERVVDVMTKRLNINP
Ga0210392_1000192113	3300021475	Soil	VKWLRDYSGLVYFLIAQAIAIGATAISLIAYSVRLETRVTTLEVRGSPHLGVIDNRLTVLESQTRDNKEAIDRIIGVMTRELGKKP
Ga0210392_100023696	3300021475	Soil	MKWLRDNSTLIYFLIAQAIAIGATVISLIAYSVRLETRVTTLEVRGSPHLGVIDNRLTVLESQTRDNKEAIDRIIGVMTRELGKKP
Ga0210392_102688832	3300021475	Soil	MMTTARSWLKENQTLVYFLIAQGFAFGTAAISMTAYMVRLETRVSTLEVRGSPHLNVIDNRLTVLESQTRDNKEAIDRMIAVMTRELGKKP
Ga0210392_107800192	3300021475	Soil	AVTELKSWFKENSTLVYFLIAQAIAIGAAVLSMTAYMVRLETRVVTLETRGSPHLAVIDNRLTVLESQTRDNKEALDRIIAVMTKELHVSPQRDKP
Ga0210392_109018052	3300021475	Soil	MRAWLTQNQTLVIFLVVQALAIVTYSVRLETRVTTLEVRGSPHLTVIDNRLTVLESQTKSNKESIERVVDVMTRGLSK
Ga0210392_110063601	3300021475	Soil	HAGSGPGRLYARMADMMTSARSWFRENHALVYFLVAQGVAIGAAVLSITAYMVRLETRVTTLEVRGSPHLAEINNRLTVLESITKTNKESLDRIVEVLTRELNKGPQK
Ga0210402_100115446	3300021478	Soil	MVEGAKSWFKENSTLIYFLIAQAFALGAAGLSVATYMVHLETRVATLETRGSPHLEKIDARLTVLEAQTKTNKDSIERIVDVMTRKLNINP
Ga0210402_100182876	3300021478	Soil	VTELKTWVRENSTLVYFLIAQAAALISGGAWALSYMVNLEARVAILETRGSSHLAEINNRLTVTEKETEANGQRLDKITDIMTRKLNINP
Ga0210402_100598888	3300021478	Soil	MTELREWVRANSALVYFLFAQAVALISGGAWALSYMTTLENRVATLETRGSPHLNIIDNRLTVLESQTKENKERLERIVDVMTKKLNINP
Ga0210402_103209233	3300021478	Soil	MTANGVKSWLQQNSTLVYFLVAQAVAIGATVLSMTAYMVRLETRVATLETRGSPHLAVIDNRLTVLESQTKTNAESIDRIVTVMTRELGKKP
Ga0207697_100039477	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MVEQAKTWLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKLEARVQTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR
Ga0207697_101520742	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MMTAGQSWIRENSTLLYFLVAQGIGIGAAVLSMTAYMVRLETRVEALETRGSSHLGEINNRLTVTEKETAANSARIERMTDIMTRNLSINPK
Ga0207697_101859202	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MMTVAQSWIKENSTLLYFLVAQGIGIGAAVLSMTAYMVRLETRVLALETRGSSHLGEINNRLTVTEKETAANSARIERMTDIMTRNLSINPK
Ga0207693_101274601	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	TELKSWLKDNATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVNTLEVRGSPHLADINTRLTVLEGLTKNNKDSIDRVVDVMTKELHVLPRRDP
Ga0207701_110381093	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MMMVARSWLKENSTLVYFLIAQFLAIGAAVLSMTAYMVRLETRVQTLETRGSSHLGEINNRLTVTEKETSANSARIERMTDIMTRNLNINPK
Ga0207709_101986912	3300025935	Miscanthus Rhizosphere	VTEIKTWFGQNSTLAYFLFAQFLAIGAAVLSMTAYMVKLEGRVLTLETRGSSHLAEINNRLTVTEKETDANRARLERMVDIMTKNLNINPR
Ga0207669_103914143	3300025937	Miscanthus Rhizosphere	MMTVARSWLKENSTLVYFLIAQAIGIGAAVLSITAYMVRLEGRVVTLETRGSSHLAEINNRLTVTEKETGANSARIERMTDIMTRNLNINPK
Ga0207711_100136599	3300025941	Switchgrass Rhizosphere	MTELRSWLRDNSTLVYFLVAQAIAIGAVVVSIIAYSVRLESRVTTLEVRGSPHLTVVDNRLTVLESQTKENKERLERIVDVMTKRLNINP
Ga0207648_113369682	3300026089	Miscanthus Rhizosphere	TLVYFLIAQAIGIGAGVLSITAYMVRLEGRVVTLETRGSSHLAEINNRLTVTEKETGANSARIERMTDIMTRNLNINPK
Ga0207648_113876012	3300026089	Miscanthus Rhizosphere	MVEQAKTWLKDNSTLVYFLLAQAVGIGAAVLSMTAYMVKLEARVVTLETRGSPHLAVIDNRLTVLESTSNENKRRLDNVINIMTKELHISPAR
Ga0207683_102891283	3300026121	Miscanthus Rhizosphere	MMTVARSWLKENSTLVYFLVAQAVGIGAAVLSITAYMVRLETRVVTLETRGSSHLAEINNRLTVTEKETGANSARIERMTDIMTRNLNINPK
Ga0207683_109709721	3300026121	Miscanthus Rhizosphere	SWLRENSTLVYFLIAQAIGIGAAVLSMTAYMVRLETRVLTLETRGSSHLQEINNRLTVTEKETEANRLRVERIVDVMTRELGKPVK
Ga0207683_109944072	3300026121	Miscanthus Rhizosphere	MMTIARSWLKENSTLVYFLIAQAIGIGAAVLSMTAYMVRLETRVLTLETRGSSHLAEINNRLTVTEKETDANKARIERMTDIMTRNLNINPK
Ga0208525_10025613	3300027288	Soil	MMIDKVRSWVAENQTLIYFLVAQAIAIGAAVISIVAYSVRLETRVNTLEVRGSPHLSEINNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPAK
Ga0207983_10093711	3300027310	Soil	YFLVAQAIAIGAAVISIVAYSVRLETRVNTLEVRGSPHLSEINNRLTVLEKQTEANKQSIDRIVDVMTKNLSVNPAK
Ga0208890_10598552	3300027523	Soil	MTDGAREWLRNNQALLYFLIAQAIAIGATSVSLIAYSVKLEARVNTLEVRGSPHLGVIDNRLTVLESQTKDNKEAIDRIVTVMTKRLNVNP
Ga0209593_1000008446	3300027743	Freshwater Sediment	MMTVVNSWFKENQTLVYFLIVQGIAIITVCASILAYSVRLETRVNTLEVRGSPHLERVDGRLTVLEAATETNKQSIDRIVNVMTRKLNINP
Ga0209811_100064323	3300027821	Surface Soil	MTELKSWVKENATLVYFLIAQAIAIGAVGTSIIAYAVRLESRVNTLEVRGSPHLAVIDNRLTVLESQTKENKERLERIVDVMTKRLNINP
Ga0307285_100612242	3300028712	Soil	MVNGAKTWMRDNSTLIYFLIAQAIAIASAGLAFTSYMVRLETRVSTLEVRGSPHLNVIDNRLTVLEATTKENKDRLEKVTDVMTRRLNINP
Ga0307503_1000007613	3300028802	Soil	MSDLKSWISDNSTLVYFLIAQAIAIGAVVISIIAYAVRLETRVNTLEVRGSPHLGTIDNRLTVLESQTKANKASIDRIVDVMTKRLNINP
Ga0170834_1015135862	3300031057	Forest Soil	MTDARTWLKENQTLVYFLMAQGIAIGAAVLSITSYSVKLESRVSTLEVRGSPHLAVIDNRLTVLESQTRDNKESIDRMVTIMTRELHISPTKDGK
Ga0170834_1084702172	3300031057	Forest Soil	MMTPGRSWFHENQTLVYFLVAQAIAIGAAGISIIAYSVRLETRVNTLEVRGSPHLAVIDNRLTVLESRTEANKERIDSVVEIMTRELNKTGTRP
Ga0170834_1112339502	3300031057	Forest Soil	MIEKVQSWISQNHFLVAQGIATGAAVISLVIYMTNLESRLATLEIRGSPHLQEINNRLTVLESTTKDNKDRLQKIVDVMTKELHISPSR
Ga0170834_1112871262	3300031057	Forest Soil	MIDKVQSWISQNHFLVAQALATGAAAISLVIYMTNLESRLSILEIRGSPHLLTIDTRLTVLESQTQTNKDSIERIKDVMTRKLNINP
Ga0170834_1118657292	3300031057	Forest Soil	VIDKVRTWFGENQTLVYFLIGQAVAIGAVGLSVVTYMVRLETRVATMEIRGSPHLEKIDSRLTVLESAMQDNKQRIDKVVDIMTRRLNINP
Ga0170822_143666641	3300031122	Forest Soil	VIDKVRTWFGENATLVYFLVGQAIAIGAVGLSVVTYMVRLETRVATMETRGSPHLEKIDSRLTVLESSTHDNKDRLDRIVDVMTRKLNINP
Ga0307498_100000087	3300031170	Soil	MVRELKSWLSENQTLVYFLVAQVLTLGAGALTMTAYMVKLEGRVVTLEIRGSPHLAEINNRLTVTEQETVANQKRIERIVDVMTRELGKRP
Ga0307498_100025242	3300031170	Soil	MVESAKSWLRENQTLIYFLIAQAIAIGAAVLSMTAYIVKLETRVATLETRGSPHLSIIDNRLTVLESQTENNKERINRLVDGATKGAPR
Ga0307498_104320901	3300031170	Soil	MMEKARSWFHDNQTLVYFLLAQGAALAAAGFSMTAYMVRLEARVQTLEVRGSPHLNDINNRLTVLESTTEENKKRLERIVDVMTRKLNINP
Ga0307500_100961412	3300031198	Soil	MTEIKSWVKENSTLIYFLIAQFVAIGAAVLSMTAYMVKLETRVLTLETRGSSHLAEINNRLTVTEKETGANSARIERMTDIMTRNLNINPK
Ga0170824_1022108362	3300031231	Forest Soil	VNAEGGKAPTTARSWFSENQALIYFLVAQAIALGAVGISIIAYAVRLETRVHTLEVRGSPHLAEINNRLTVLESQTQTNKQSIDRIVEIMTRELKK
Ga0170824_1033040432	3300031231	Forest Soil	MIDKVQSWISQNHFLVAQALATGAAAISLVIYMTNLESRLSILEIRGSPHLLTIDTRLTVLESQTQTNKDSIERIKDVMTRRLNINP
Ga0170818_1058408912	3300031474	Forest Soil	MTALKEWAKANAGLIYFLIAQAIGIGTAVFSLTVYMTSLESRVSTLEIRGSPHLAEINNRLTVTEKETEANRARVERIVDIMTRKLNLPVQ
Ga0307474_106786041	3300031718	Hardwood Forest Soil	VTELKSWVKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVAILETRGSPHLSTIDNRLTVLESQTKANKDSVDRIVDVMTRKLNINP
Ga0307477_105833653	3300031753	Hardwood Forest Soil	VTELKSWVKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVATLETRGSPHLGTIDNRLTVLESQTKANKDSIERIVDVMTRKLNINP
Ga0307478_111343281	3300031823	Hardwood Forest Soil	VTELKSWVKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVAILETRGSPHLSTIDNRLTVLESQTKANKDSVERIVDVMTRKLNINP
Ga0307479_115174052	3300031962	Hardwood Forest Soil	VTELKSWIKANATLVYFLIAQAIAIGAAVLSMTAYMVRLETRVAILETRGSPHLSTIDNRLTVLESQTKANKDSVERIVDVMTRKLNINP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087529

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences