Metagenome / Metatranscriptome Family F087525

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087525
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	47 residues
Representative Sequence	LSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV
Number of Associated Samples	94
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.64 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (59.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (38.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.22% β-sheet: 16.44% Coil/Unstructured: 75.34%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01972	SDH_sah	4.55
PF00999	Na_H_Exchanger	4.55
PF03358	FMN_red	3.64
PF13462	Thioredoxin_4	2.73
PF00578	AhpC-TSA	2.73
PF06684	AA_synth	2.73
PF13193	AMP-binding_C	2.73
PF07992	Pyr_redox_2	1.82
PF13668	Ferritin_2	1.82
PF12680	SnoaL_2	1.82
PF00482	T2SSF	0.91
PF12833	HTH_18	0.91
PF01965	DJ-1_PfpI	0.91
PF01022	HTH_5	0.91
PF14329	DUF4386	0.91
PF02518	HATPase_c	0.91
PF08241	Methyltransf_11	0.91
PF12903	DUF3830	0.91
PF10431	ClpB_D2-small	0.91
PF10604	Polyketide_cyc2	0.91
PF06803	DUF1232	0.91
PF07366	SnoaL	0.91
PF06772	LtrA	0.91
PF10011	DUF2254	0.91
PF03446	NAD_binding_2	0.91
PF02780	Transketolase_C	0.91
PF07724	AAA_2	0.91
PF01243	Putative_PNPOx	0.91
PF09423	PhoD	0.91
PF12802	MarR_2	0.91
PF06965	Na_H_antiport_1	0.91
PF14833	NAD_binding_11	0.91
PF13458	Peripla_BP_6	0.91
PF13561	adh_short_C2	0.91
PF06224	HTH_42	0.91
PF00196	GerE	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	9.09
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	5.45
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	4.55
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	4.55
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	4.55
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	4.55
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.91
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.91
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.55 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	8.18 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.73 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.18 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.82 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.91 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.91 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.18 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.82 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.91 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.91 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.18 %
Nocardioides panacis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	1.82 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.91 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.91 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	8.18 %
Nocardioides panacis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	1.82 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.91 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.91 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725002\|GPICC_F5MS3JC01DHAVL	Not Available	532	Open in IMG/M
2170459007\|GJ61VE201C0XEH	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300003319\|soilL2_10047857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6181	Open in IMG/M
3300003321\|soilH1_10125090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4015	Open in IMG/M
3300003322\|rootL2_10029050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1280	Open in IMG/M
3300004153\|Ga0063455_101353850	Not Available	546	Open in IMG/M
3300004157\|Ga0062590_101393828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	697	Open in IMG/M
3300004157\|Ga0062590_102183018	Not Available	579	Open in IMG/M
3300004157\|Ga0062590_102659039	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300004479\|Ga0062595_101878503	Not Available	573	Open in IMG/M
3300004643\|Ga0062591_102214185	Not Available	572	Open in IMG/M
3300005093\|Ga0062594_102748987	Not Available	546	Open in IMG/M
3300005294\|Ga0065705_10859292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300005329\|Ga0070683_101322079	Not Available	693	Open in IMG/M
3300005347\|Ga0070668_100270735	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300005356\|Ga0070674_101543850	Not Available	598	Open in IMG/M
3300005438\|Ga0070701_10139365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1385	Open in IMG/M
3300005439\|Ga0070711_100163695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1688	Open in IMG/M
3300005441\|Ga0070700_100020543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3827	Open in IMG/M
3300005530\|Ga0070679_101640819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	591	Open in IMG/M
3300005535\|Ga0070684_101992083	Not Available	548	Open in IMG/M
3300005543\|Ga0070672_101654083	Not Available	575	Open in IMG/M
3300005615\|Ga0070702_100912689	Not Available	689	Open in IMG/M
3300005617\|Ga0068859_100876996	Not Available	983	Open in IMG/M
3300005718\|Ga0068866_10919426	Not Available	617	Open in IMG/M
3300005719\|Ga0068861_100389403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1234	Open in IMG/M
3300005842\|Ga0068858_100382600	Not Available	1350	Open in IMG/M
3300005874\|Ga0075288_1019485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	951	Open in IMG/M
3300006175\|Ga0070712_101902563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300006581\|Ga0074048_12974352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	689	Open in IMG/M
3300006844\|Ga0075428_101182148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	807	Open in IMG/M
3300006846\|Ga0075430_101558677	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006853\|Ga0075420_101641672	Not Available	551	Open in IMG/M
3300006854\|Ga0075425_100297723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1856	Open in IMG/M
3300006854\|Ga0075425_102549232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300006880\|Ga0075429_101008935	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300006881\|Ga0068865_100661754	Not Available	889	Open in IMG/M
3300009094\|Ga0111539_10445414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1508	Open in IMG/M
3300009094\|Ga0111539_11094536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	926	Open in IMG/M
3300009094\|Ga0111539_12113825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300009148\|Ga0105243_12303639	Not Available	576	Open in IMG/M
3300009156\|Ga0111538_11268521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	930	Open in IMG/M
3300009156\|Ga0111538_13841986	Not Available	520	Open in IMG/M
3300009176\|Ga0105242_11464156	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300010371\|Ga0134125_11802411	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010373\|Ga0134128_11455467	Not Available	754	Open in IMG/M
3300010403\|Ga0134123_10105650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	2252	Open in IMG/M
3300010403\|Ga0134123_11687534	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300011439\|Ga0137432_1309841	Not Available	504	Open in IMG/M
3300012212\|Ga0150985_115224123	Not Available	590	Open in IMG/M
3300012897\|Ga0157285_10083805	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300012897\|Ga0157285_10086963	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300012898\|Ga0157293_10105365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300012905\|Ga0157296_10076267	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012907\|Ga0157283_10236162	Not Available	598	Open in IMG/M
3300012910\|Ga0157308_10134869	Not Available	770	Open in IMG/M
3300012910\|Ga0157308_10140307	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300012930\|Ga0137407_11501242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
3300012938\|Ga0162651_100047617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	669	Open in IMG/M
3300013297\|Ga0157378_11155371	Not Available	813	Open in IMG/M
3300013306\|Ga0163162_11408272	Not Available	793	Open in IMG/M
3300013307\|Ga0157372_11751801	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300013308\|Ga0157375_11538704	Not Available	786	Open in IMG/M
3300014326\|Ga0157380_12409504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	591	Open in IMG/M
3300014745\|Ga0157377_11758118	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300014969\|Ga0157376_11463194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	716	Open in IMG/M
3300015053\|Ga0137405_1321698	All Organisms → cellular organisms → Bacteria	2773	Open in IMG/M
3300015077\|Ga0173483_10579023	Not Available	613	Open in IMG/M
3300015242\|Ga0137412_10935319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300015371\|Ga0132258_10529895	All Organisms → cellular organisms → Bacteria	2950	Open in IMG/M
3300015371\|Ga0132258_11596131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1647	Open in IMG/M
3300015372\|Ga0132256_100941373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M
3300015373\|Ga0132257_102909877	Not Available	624	Open in IMG/M
3300015374\|Ga0132255_103782003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	643	Open in IMG/M
3300018066\|Ga0184617_1148394	Not Available	685	Open in IMG/M
3300018466\|Ga0190268_10124450	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300018466\|Ga0190268_10258457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1008	Open in IMG/M
3300018469\|Ga0190270_10052870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2837	Open in IMG/M
3300018469\|Ga0190270_12972978	Not Available	536	Open in IMG/M
3300018476\|Ga0190274_11724360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300018481\|Ga0190271_10215933	Not Available	1924	Open in IMG/M
3300018481\|Ga0190271_11754944	Not Available	733	Open in IMG/M
3300019356\|Ga0173481_10217651	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300019361\|Ga0173482_10572343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300021078\|Ga0210381_10033343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1462	Open in IMG/M
3300023261\|Ga0247796_1088445	Not Available	582	Open in IMG/M
3300025898\|Ga0207692_10183278	Not Available	1221	Open in IMG/M
3300025907\|Ga0207645_10058458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2461	Open in IMG/M
3300025920\|Ga0207649_11599282	Not Available	516	Open in IMG/M
3300025928\|Ga0207700_11706298	Not Available	555	Open in IMG/M
3300025932\|Ga0207690_10914190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300025933\|Ga0207706_10024006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5471	Open in IMG/M
3300025935\|Ga0207709_10854267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	737	Open in IMG/M
3300025937\|Ga0207669_10162940	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300025941\|Ga0207711_10151112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2095	Open in IMG/M
3300025944\|Ga0207661_11390367	Not Available	644	Open in IMG/M
3300026067\|Ga0207678_11549870	Not Available	584	Open in IMG/M
3300028381\|Ga0268264_12282884	Not Available	548	Open in IMG/M
3300028589\|Ga0247818_10874394	Not Available	631	Open in IMG/M
3300028754\|Ga0307297_10090984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	993	Open in IMG/M
3300028810\|Ga0307294_10410688	Not Available	510	Open in IMG/M
3300028885\|Ga0307304_10541269	Not Available	536	Open in IMG/M
3300030336\|Ga0247826_10489626	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300030336\|Ga0247826_10911954	Not Available	694	Open in IMG/M
3300030336\|Ga0247826_11377401	Not Available	569	Open in IMG/M
3300030336\|Ga0247826_11392605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300031731\|Ga0307405_11034645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	702	Open in IMG/M
3300031740\|Ga0307468_101031120	Not Available	727	Open in IMG/M
3300031908\|Ga0310900_10476516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	965	Open in IMG/M
3300032002\|Ga0307416_101019011	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.18%
Host-Associated	Host-Associated	41.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.45%
Plants	Host-Associated → Plants	41.82%
Aquatic	Environmental → Aquatic	2.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.91%
Sediment	Environmental → Aquatic → Sediment	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.91%
Rhizome	Host-Associated → Plants → Rhizome	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.91%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.09%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.18%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003322	Sugarcane root Sample L2	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_03160070	2067725002	Soil	GALQSDDRIRVDYDDVQLTFDVDKGAAEAMEEVEEPESQPAHV
L02_03202260	2170459007	Grass Soil	ALQTHDRVRVDYDDVQLTFDVDKGAEEVEEPHSQPAHV
soilL2_1004785711	3300003319	Sugarcane Root And Bulk Soil	ENEVSRLLLRGALQPDDRVRVDYDDVQLTLDVDKGAAEAMEEVEEPESQPAHV*
soilH1_101250901	3300003321	Sugarcane Root And Bulk Soil	QRELENEVSRLLLRGALQPDDRVRVDYDDVQLTLDVDKGAAEAMEEVEEPESQPAHV*
rootL2_100290501	3300003322	Sugarcane Root And Bulk Soil	SRLLLSGALQPDDRVRVDFQLTFDIDKGAAEAMEEVEEPEPQPANV*
Ga0063455_1013538502	3300004153	Soil	ALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPAHV*
Ga0062590_1013938282	3300004157	Soil	IEPGDRVRVDYDDVQLTFDVEKGAEADEKVEQPERQPAHA*
Ga0062590_1021830181	3300004157	Soil	LRGALQPDDRVHVDYDDVQLTFDIDKGAAEAIETQELQPAQV*
Ga0062590_1026590392	3300004157	Soil	RELENEVSRLLLSGALQPDDRLRVDYDDVQLTFEIEKEAAETIEEVDEPESQPAHV*
Ga0062595_1018785031	3300004479	Soil	PDDRVRVDYDDVQLTFDVDKGAAEEMEEVEEPESQPAHV*
Ga0062591_1022141851	3300004643	Soil	ENELSRLLLSGALQPDDRVRIDYDDVQLTFEIDKGAAEAIEEVEDPESQPAQV*
Ga0062594_1027489872	3300005093	Soil	RLLLGGSIEPGDRVRVDYDGVQLTFDVEKGAAEADEQVEQPERQPAHA*
Ga0065705_108592921	3300005294	Switchgrass Rhizosphere	RGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPAHV*
Ga0070683_1013220792	3300005329	Corn Rhizosphere	LSGALQPDDRVRVDHDGVQLTFEVDKGAAEAMEEVEEPEPQPAHV*
Ga0070668_1002707351	3300005347	Switchgrass Rhizosphere	LRGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPAHV*
Ga0070674_1015438503	3300005356	Miscanthus Rhizosphere	SGALQPDDRVRVDYDDVQLTFDIDRGAVEAMEEVEEPEPQPAHV*
Ga0070701_101393653	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	IEPGDRVRVDYDGVQLTFDVEKGAAEADEQVEQPERQPAHA*
Ga0070711_1001636953	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RLLLSGALQPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPELQPAHV*
Ga0070700_1000205434	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTSDSTSSSSSDRRELENEVSRLLLSRALQPDDRVRVDFDDVQLTFDIDKGGAESMEEVEEPESQLAHV*
Ga0070679_1016408192	3300005530	Corn Rhizosphere	LQPDDRVRVDYDDVQLTFDVDKGAAEAMEEVDEPEPQPAPV*
Ga0070684_1019920832	3300005535	Corn Rhizosphere	SRLLLSGALQPDDRVRVDHDGVQLTFDIDKGPEEATEEEVIEPESPAYV*
Ga0070672_1016540831	3300005543	Miscanthus Rhizosphere	RVRVDYDDVQLTFDIDKGAVEAMEEVEESEPQPAHV*
Ga0070702_1009126893	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ALQPDDRVRVDYDDVQLTFDIDKGGAEAMEEVEEPEPQPAHV*
Ga0068859_1008769961	3300005617	Switchgrass Rhizosphere	LSGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPEPQPAHV*
Ga0068866_109194261	3300005718	Miscanthus Rhizosphere	PDDRVRVDYDDVQLTFDVDKGAAEAMEEVEEPEAQPAHV*
Ga0068861_1003894031	3300005719	Switchgrass Rhizosphere	IQRELENEVSRLLLSGALQPDDRLRVDYDDVQLTFEIEKEAAETIEEVDEPESQPAHV*
Ga0068858_1003826001	3300005842	Switchgrass Rhizosphere	PDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPEPQPAHV*
Ga0075288_10194854	3300005874	Rice Paddy Soil	RVDYDDVQLTFDIDKGGAEAMEEVEEPEPQPAHV*
Ga0070712_1019025632	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IQRELENEVSRLLLSGALQPDDRVRVDYDDVQLTLDVDKGAAEAMEAVEEPESQPAHV*
Ga0074048_129743521	3300006581	Soil	ENEVSRLLLSGALQPDDRVRADFDDVQLTFDVEKGAAEQIEEVEEPESEPAHV*
Ga0075428_1011821481	3300006844	Populus Rhizosphere	RAIQRELENEVSRLLLSGALQSDDRVRVDYDDIQLTFDVDKGAAEALEEVDEPESQPAHV
Ga0075430_1015586772	3300006846	Populus Rhizosphere	LLSGALQPDDRVRVDYDDVQLTFDIDKGGAEAIDEVEEPEPQPAHV*
Ga0075420_1016416722	3300006853	Populus Rhizosphere	LQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPESEPAHV*
Ga0075425_1002977234	3300006854	Populus Rhizosphere	SGALQPDDRIRVDYDDVQLTFDVEKEAAEAMEEVEEPELQPAHA*
Ga0075425_1025492321	3300006854	Populus Rhizosphere	QPDDRVRVDYDDVQLTFDIDKGAAEAIEEVEEPEPQPAHV*
Ga0075429_1010089351	3300006880	Populus Rhizosphere	LQPDDRVRVDYDDVQLTFDIDKGAAEALEEVEEPEPAHV*
Ga0068865_1006617541	3300006881	Miscanthus Rhizosphere	DRVRVDYDDVQLTFDVEKGAAEADEQVEQPERQPAHA*
Ga0111539_104454141	3300009094	Populus Rhizosphere	IQRELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV*
Ga0111539_110945363	3300009094	Populus Rhizosphere	LSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV*
Ga0111539_121138251	3300009094	Populus Rhizosphere	VIEEGLEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAIEEVEEPEPQPAHV*
Ga0105243_123036391	3300009148	Miscanthus Rhizosphere	LRGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPARV*
Ga0111538_112685211	3300009156	Populus Rhizosphere	LLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV*
Ga0111538_138419862	3300009156	Populus Rhizosphere	RAIQRELENEVSRLLLSGALQPDDRVRVDFDDVQLTFDVDKGAAEAMEEVEEPESQPAHA
Ga0105242_114641563	3300009176	Miscanthus Rhizosphere	EPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPELQPSHV*
Ga0134125_118024112	3300010371	Terrestrial Soil	VRVDYDDVQLTFDIDKGAAEAIEEVEEPESQPAHV*
Ga0134128_114554672	3300010373	Terrestrial Soil	QRELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAIEEVEEPEPQPQPAHV*
Ga0134123_101056501	3300010403	Terrestrial Soil	LENEVSRLLLSRALQPDDRVRVDFDDVQLTFDIDKGGAESMEEVEEPESQLAHV*
Ga0134123_116875341	3300010403	Terrestrial Soil	RRAIQRELENEVSRLHLSGALQTDDRVRVDYDDVQLTFDVEKGAAEEVEEPESQLAHA*
Ga0137432_13098412	3300011439	Soil	RAIQRELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV
Ga0150985_1152241232	3300012212	Avena Fatua Rhizosphere	ENELSRLLLSGALQPDDRVRVDYDDVQLFFDVEKGAAEAMEEVEEPELEAAHV*
Ga0157285_100838051	3300012897	Soil	PGDRVRVDYDGVQLTFDVEKGAAEADEQVEQPERQPAHA*
Ga0157285_100869632	3300012897	Soil	GALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEESEPAHV*
Ga0157293_101053652	3300012898	Soil	LSGALQPDDRVRVDYDDIQLTFDVDKGAAEAMEEVDEPESQPAHV*
Ga0157296_100762673	3300012905	Soil	RVRIDYDDVQLTFEVDKGAAEAMEEVDEPESEPAHA*
Ga0157283_102361621	3300012907	Soil	LQPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPELESAHV*
Ga0157308_101348691	3300012910	Soil	ELENEVSRLLLSGGLQPDDRVRVDYDDVQLSFDIDKGAAEAMEEVEEPEPQPAHV*
Ga0157308_101403072	3300012910	Soil	RLVLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAIEEVEESEPAHV*
Ga0137407_115012422	3300012930	Vadose Zone Soil	ENELSRLLLRGSIEPGDRVRVDYDEVELKFDVEKGAAEADQKVDQPERERAHAS*
Ga0162651_1000476172	3300012938	Soil	IQRELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDVDKGAAEQMEKVEEPESQPAHA*
Ga0157378_111553712	3300013297	Miscanthus Rhizosphere	QRELENEVSRLLLSGALQPDDRLRVDYDDVQLTFEIEKEAAETIEEVDEPESQPAHV*
Ga0163162_114082721	3300013306	Switchgrass Rhizosphere	QPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV*
Ga0157372_117518013	3300013307	Corn Rhizosphere	LRVDYDDVQLTFEIEKEAAETIEEVDEPESQPAHV*
Ga0157375_115387042	3300013308	Miscanthus Rhizosphere	DYDDVQLTFDIDKGAAEAMEEVEEPEPQPQPQPAHV*
Ga0157380_124095042	3300014326	Switchgrass Rhizosphere	AIQRELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDVDKGAAEAMEEVDEPEPQPAPV*
Ga0157377_117581182	3300014745	Miscanthus Rhizosphere	GALQPDDRVRVDYDDVQLTFDVDKGAAEAMEEVEEPEAQPAHV*
Ga0157376_114631942	3300014969	Miscanthus Rhizosphere	VSRLLLRGALQPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPESQLAHV*
Ga0137405_13216985	3300015053	Vadose Zone Soil	LASDYDEVELTFDVEKGAAESDQKVEQTERQPAHAS*
Ga0173483_105790231	3300015077	Soil	RRAIQRELENEVSRLVLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEESEPAHV*
Ga0137412_109353193	3300015242	Vadose Zone Soil	RVRVDYDDVQLTFDVEKGAAEADEKVEQPEREPAYAS*
Ga0132258_105298951	3300015371	Arabidopsis Rhizosphere	SGALQPDDRVRVDYDDVQLTFDIDKGAAEETEEVEEPEPQPAHV*
Ga0132258_115961313	3300015371	Arabidopsis Rhizosphere	RAIQRELENEVSRLLLSGALQPDDRVRVDYGDVQLTFDIDKGAAEEMEEVEEPEPQPAHV
Ga0132256_1009413732	3300015372	Arabidopsis Rhizosphere	VTIVHGTARGALLLSGALQPDDRVRVDYDDVQLTFDIGKGAAEAIEEVEEPDSQPAHV*
Ga0132257_1029098771	3300015373	Arabidopsis Rhizosphere	VRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV*
Ga0132255_1037820032	3300015374	Arabidopsis Rhizosphere	LSGALQPDDRVRVDYDDVQLTFDIDRGAVEAMEEVEESEPQPAHV*
Ga0184617_11483942	3300018066	Groundwater Sediment	ELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPESQPAHA
Ga0190268_101244503	3300018466	Soil	ENEVSRLLLSGAVQPDDRVRVDYDHVQLTFDVDKGAAEAMEEVEEPESQPAHA
Ga0190268_102584572	3300018466	Soil	LQPDDRVRVDYDDVQLTFDIDKGAAEAIEEVEEPEPQPAHV
Ga0190270_100528706	3300018469	Soil	ENEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEEMEEVEEPESQPAHV
Ga0190270_129729782	3300018469	Soil	ENELSRLLLSGALQPDDRVRVDYDDVQLIFDVEKGAAEAMEEVEEPEPQPAHA
Ga0190274_117243602	3300018476	Soil	LESEVSRLLLSGALQPDDRVRVDYDDVQFTFDVDKGAAEAMEEVEEPQSQPAHV
Ga0190271_102159331	3300018481	Soil	QRELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEEMEEVEEPESQPAHV
Ga0190271_117549442	3300018481	Soil	VRVDYDDVQLTFDVEKGAAEAMEEVEEPESQPAHV
Ga0173481_102176512	3300019356	Soil	LLLGGSIEPSDRVRVDYDDVQLTFDVEKGAAEADEEVEQPEREPAHAS
Ga0173482_105723431	3300019361	Soil	RAIQRELENEVSRLLLRGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPAHV
Ga0210381_100333431	3300021078	Groundwater Sediment	EVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAIEEVEEPEPQPAHV
Ga0247796_10884451	3300023261	Soil	DDRVRVDYDDVQLTFDIDKGAAEAMEEVEESEPAHV
Ga0207692_101832781	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	QPDDRVRVDYDEVQLTFDIDKGGAEAMEEVEEPEPQPAHV
Ga0207645_100584583	3300025907	Miscanthus Rhizosphere	DRVRVDYDDVQLTFDVDKGAAEAMEEVDEPEPQPAPV
Ga0207649_115992821	3300025920	Corn Rhizosphere	DDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPEPQPAHV
Ga0207700_117062981	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LLLSGALQPDDRVRVDYDEVQLTFDIDKGGAEAMEEVEEPEPQPAHV
Ga0207690_109141901	3300025932	Corn Rhizosphere	LLSGALQPDDRVRVDYDDVQLTFDVDKGAAEEMEEVEEPESQPAHV
Ga0207706_100240061	3300025933	Corn Rhizosphere	VSRLLLRGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPEPQPAHV
Ga0207709_108542672	3300025935	Miscanthus Rhizosphere	LVTSDSTSSSSSDRRELENEVSRLLLSRALQPDDRVRVDFDDVQLTFDIDKGGAESMEEVEEPESQLAHV
Ga0207669_101629403	3300025937	Miscanthus Rhizosphere	SRLLLSGALQPDDRLRVDYDDVQLTFEIEKEAAETIEEVDEPESQPAHV
Ga0207711_101511121	3300025941	Switchgrass Rhizosphere	LLLSGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPEPQPAHV
Ga0207661_113903671	3300025944	Corn Rhizosphere	IQRELENEVSRLLLSGALQPDDRVRVDHDGVQLTFEVDKGAAEAMEEVEEPEPQPAHV
Ga0207678_115498702	3300026067	Corn Rhizosphere	QPDDRVRVDYDDVQLTFDVEKGAAEAMDEVEEPESQLAHV
Ga0268264_122828841	3300028381	Switchgrass Rhizosphere	PDDRVRVDYDDVQLTFDIDKGAVEAMEEVEEPEPQPAHV
Ga0247818_108743942	3300028589	Soil	RLLLSGALQPDDRVRVDYDGVQLTFEVGKGGAEEREEVEEPESQPAHV
Ga0307297_100909841	3300028754	Soil	ENEVSRLLLSGALQPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPESQPAHI
Ga0307294_104106882	3300028810	Soil	RLLLRGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPAHI
Ga0307304_105412691	3300028885	Soil	ELENEVSRLLLSGALQPDDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV
Ga0247826_104896261	3300030336	Soil	RVRVDYDDVQLTFDVEKGAEAMEEVEEPESQPAHV
Ga0247826_109119542	3300030336	Soil	RLLLRGALQPDDRVRVDYDDVQLTFDVDKGAAEVMEEVEEPESQPAHV
Ga0247826_113774011	3300030336	Soil	GDRVRVDYDGVQLTFDVEKGAAEADEQVEQPERQPAHA
Ga0247826_113926052	3300030336	Soil	LLGGALQPDDRVRVDYDDVQLTFDVDKDAAEAMEEVDEPESQPAHV
Ga0307405_110346452	3300031731	Rhizosphere	DDRVRVDYDDVQLTFDIDKGAAEEMEEVEEPESQPAHV
Ga0307468_1010311202	3300031740	Hardwood Forest Soil	DDRVRVDYDDVQLTFDIDKGAAEAMEEVEEPEPQPAHV
Ga0310900_104765161	3300031908	Soil	ENEVSRLLLSGALQPDDRVRVDYDDVQLTFDVEKGAAEAMEEVEEPESQPAHV
Ga0307416_1010190111	3300032002	Rhizosphere	SDDRVRVDYDDVQLTFDIDKGAAEEMEEVEEPESQPAHV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087525

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences