Metagenome / Metatranscriptome Family F087524

Basic Information
Family ID	F087524
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	86 residues
Representative Sequence	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQ
Number of Associated Samples	103
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	2.73 %
% of genes from short scaffolds (< 2000 bps)	1.82 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (97.273 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.000 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 88.46% β-sheet: 0.00% Coil/Unstructured: 11.54%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13344	Hydrolase_6	84.55
PF03575	Peptidase_S51	10.00
PF13242	Hydrolase_like	1.82
PF01594	AI-2E_transport	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.91

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
All Organisms	root	All Organisms	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
cellular organisms	root	All Organisms → cellular organisms	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.27 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_19	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_19	0.91 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005458\|Ga0070681_10367595	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300018000\|Ga0184604_10034612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_19	1308	Open in IMG/M
3300019878\|Ga0193715_1004465	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3020	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.64%
Host-Associated	Host-Associated	16.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.64%
Plants	Host-Associated → Plants	16.36%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.00%
Sediment	Environmental → Aquatic → Sediment	6.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.45%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Marine	Environmental → Aquatic → Marine	0.91%
Peat	Environmental → Terrestrial → Peat	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.45%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.36%
Sand	Environmental → Terrestrial → Soil → Sand	6.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.64%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Fossil	Environmental → Terrestrial → Soil → Fossil	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Fossil → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.36%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	6.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Fossill	Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill	0.91%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005875	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012225	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT860_2	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015170	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025973	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026015	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031237 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033502	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fraction	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01907610	2088090015	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAG
ICCgaii200_08671661	2228664021	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAA
JGI10214J12806_100903873	3300000891	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAVPGPADTAARSAE
JGI10214J12806_110613882	3300000891	Soil	MSNSRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSELLRFLEEQPAPVATPGGAAQ
JGI11615J12901_104042642	3300000953	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEHHDAGARPAA
JGI24741J21665_10312532	3300001915	Corn Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEHHDAGARPA
JGI25613J43889_100133344	3300002907	Grasslands Soil	MSSGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEQPAPATAGGPGETSSAGDH
Ga0062593_1003967351	3300004114	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQH
Ga0065705_107199902	3300005294	Switchgrass Rhizosphere	MSTGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLE
Ga0065707_109461582	3300005295	Switchgrass Rhizosphere	MSTGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEQPAP
Ga0070677_101331632	3300005333	Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLS
Ga0070666_108335011	3300005335	Switchgrass Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNL
Ga0070692_100270061	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQIGQFQAQMGLGVALGCALVGLFIFSNLMARL
Ga0070673_1003481242	3300005364	Switchgrass Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAEPGPADTAARSAEPASPHAVPAPVHPGGLVIPGL
Ga0070688_1001546701	3300005365	Switchgrass Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEV
Ga0070713_1017179161	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQHDAAGPVGSAAAVVAHASGAHDAVV
Ga0070681_103675953	3300005458	Corn Rhizosphere	MSNSRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSELLRF
Ga0070699_1000421946	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRAGTGAVASAVPAVGGDLAARP
Ga0070679_1000352361	3300005530	Corn Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAEPGPADTAARSAEPASPHAVPAPVHPGGLVIPGLGTI
Ga0070696_1019612741	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSNSRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSN
Ga0075293_10096141	3300005875	Rice Paddy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLRLTEAQMGLGVALACALVGLFIFSNLMARLSEVL
Ga0070712_1019759731	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQHDAAGPVGSA
Ga0097621_1006365791	3300006237	Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAEPGPADTAARSAEPASPHAVPAPVHPGGLVIP
Ga0099793_107223121	3300007258	Vadose Zone Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRAGTGAAAPAVPAAGGD
Ga0099829_101749093	3300009038	Vadose Zone Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRY
Ga0105095_101568441	3300009053	Freshwater Sediment	MSNSRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALACALVGLFIFSNLMARLGEVLRFLEG
Ga0105240_126679552	3300009093	Corn Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLE
Ga0111539_110751921	3300009094	Populus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVL
Ga0105241_118839621	3300009174	Corn Rhizosphere	MSNSRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSELLRFLEEQPAPVATP
Ga0137377_100648755	3300012211	Vadose Zone Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRTGTTAAASAT
Ga0137434_10031621	3300012225	Soil	MSNARTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLS
Ga0137398_107615642	3300012683	Vadose Zone Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDAGGRAGAGAAASAVPGVGGDVAARPV
Ga0164309_101988041	3300012984	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGA
Ga0164305_105582582	3300012989	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEHHDAGAR
Ga0157371_103214782	3300013102	Corn Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGA
Ga0075353_10084972	3300014321	Natural And Restored Wetlands	MSKGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSEVLRFLRRNRPPPRPPAAAAR*
Ga0157377_104808881	3300014745	Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEHHDAGARPAAAVPGPTDTAARSAEPASPHA
Ga0137411_12215561	3300015052	Vadose Zone Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEHPAPA
Ga0120098_10132071	3300015170	Fossill	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYRLGQLGQFQAQMGLGVALACALVGLFIFSNLMARLSEVLRFLEREPASAAPPTGPAEAGS
Ga0132256_1009387181	3300015372	Arabidopsis Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSVVLRYLEEQQDGTAPETA
Ga0132257_1029241812	3300015373	Arabidopsis Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYL
Ga0132255_1016182202	3300015374	Arabidopsis Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAVPGPADTAARSAEPASPHA
Ga0187776_100200295	3300017966	Tropical Peatland	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLDMLRLTQAQMGLGVALGCALVGLFIFSNLMGRLSEVLRYLEEQAAADGDEGASAAPTPE
Ga0187822_100173281	3300017994	Freshwater Sediment	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEV
Ga0184604_100346123	3300018000	Groundwater Sediment	MNNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMGRLGEVLRFLE
Ga0187788_101121852	3300018032	Tropical Peatland	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLDMLRLTQAQMGLGVALGCALVGLFIFSNLMGRLSEVLRYLEEQAAADGD
Ga0184623_102077382	3300018056	Groundwater Sediment	MSNARTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSEVLRFLEGQ
Ga0184619_100420793	3300018061	Groundwater Sediment	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEGQPAPATP
Ga0184617_10041841	3300018066	Groundwater Sediment	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEGQPAPA
Ga0184618_100892633	3300018071	Groundwater Sediment	MNNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGE
Ga0184640_104697292	3300018074	Groundwater Sediment	MSNVRTYTLRNAASIVFALTAVIPLLLFTYTLYRLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSEVLRFLEGQPA
Ga0193715_10044655	3300019878	Soil	MNNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEGQPAP
Ga0193747_10065984	3300019885	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDAGGRAGAGAAAS
Ga0193729_11292432	3300019887	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEE
Ga0193755_12128942	3300020004	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQPDAGGRAGAG
Ga0193735_11002512	3300020006	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQPDAGGRAGAGAAASAVPGVGG
Ga0187768_10206063	3300020150	Tropical Peatland	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLGHSQAQMGLAAALACALVGLFIFSNLMGRLAEVLRYLEQQGPSP
Ga0179594_100966761	3300020170	Vadose Zone Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFL
Ga0210407_110071091	3300020579	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYTLNQLGHSQAQMGLATALACALVGLFIFSNLMGRLAEVLRYLEEQAPSPATATAPGSSGDSLNGAEGAGAS
Ga0210401_106523802	3300020583	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYTLNQLGHSQAQMGLATALACALVGLFIFSNLMGRLAEVLRYLEEQAPTPATATAPRSSGDSLNGAEGASASSNA
Ga0210381_100288053	3300021078	Groundwater Sediment	MNNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEGQ
Ga0126371_127290181	3300021560	Tropical Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNDLRQTEAQMGLGAALVCALVGLFIFSNLMGRLSEVLRYIERQD
Ga0207682_101465211	3300025893	Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAEPGPADTAAR
Ga0207684_115478652	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGARPAAAVPGPADTAARSA
Ga0207707_114719522	3300025912	Corn Rhizosphere	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQIGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEQPAPATAGGPGETS
Ga0207662_111133882	3300025918	Switchgrass Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARL
Ga0207646_105396542	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMA
Ga0207667_109453961	3300025949	Corn Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLDLLKLTQAQMGLGTALACALVGLFIFSNLMGRLSEVLRYLEERDVSDQVGTEVSPPSRS
Ga0210145_10202421	3300025973	Natural And Restored Wetlands	MSKGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSEVL
Ga0208286_10052541	3300026015	Rice Paddy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALDQIRSTEAQMGLGVALGCALVGLFIFSNLMARLSEVLRYLEERGATEQPEAG
Ga0207708_108202151	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQIGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEQ
Ga0207675_1020874881	3300026118	Switchgrass Rhizosphere	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQIGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEQPAPATAGGPGETSS
Ga0257176_10157772	3300026361	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRAGTGAVASAVPAAGGDVA
Ga0257167_10685341	3300026376	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRAGTGAVASAVPAVGGDVA
Ga0257158_10085433	3300026515	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDAGG
Ga0209648_106615082	3300026551	Grasslands Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGMALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRAGTGAV
Ga0209217_11743552	3300027651	Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDAGGRAGAGAAASAVPGVGGDVAA
Ga0208991_11715842	3300027681	Forest Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLSEVLRYLEE
Ga0209998_100282662	3300027717	Arabidopsis Thaliana Rhizosphere	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDAGAR
Ga0209178_11762902	3300027725	Agricultural Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLDQLKLTEAQMGLGVGLVCALVGLFIFSNLMGRLSEVLRYLEAQH
Ga0209074_101988902	3300027787	Agricultural Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLDQLKLTEAQMGLGVGLVCALVGLFIFSNLMGRLSEVLRYLEAQHDAGTAAHAGAPAATVPHATAPVPIHG
Ga0209074_102099951	3300027787	Agricultural Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQ
Ga0209180_102715291	3300027846	Vadose Zone Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLR
Ga0247818_102212971	3300028589	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMGRLSEVLRYLEEQHDA
Ga0247822_112526692	3300028592	Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQIGQFQAQMGLGVALGCALVGLFIFSNLMARLGELV
Ga0247819_105831371	3300028608	Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLR
Ga0257175_10889001	3300028673	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRTGTTAAASATPGAGG
Ga0307293_100048875	3300028711	Soil	MNNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEGQPAPATPP
Ga0307282_102325462	3300028784	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLKLTEAQMGLGVALTCALVGLFIFSNLMA
Ga0307504_104652931	3300028792	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLRHTEAQMGLGAALACALVGLFIFSNLMARLSEVLR
Ga0222749_102675291	3300029636	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQHDAAGSAPSAATASAHA
(restricted) Ga0255311_10958901	3300031150	Sandy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLRHTEAQMGLGAALACALVGLFIFSNLMARLSEVLRFLEGQEPAAEPGAAAVQPAVTADAGSSARP
(restricted) Ga0255311_11152162	3300031150	Sandy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAARPGTASSTPSASGSVPEAGARPAATAPGS
(restricted) Ga0255310_100516471	3300031197	Sandy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGTAPPGTAASAPSTAGAG
(restricted) Ga0255310_100528731	3300031197	Sandy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLRHTEAQMGLGAALACALVGLFIFSNLMARLSEVLRFLEGQEPAEEPGAAAVQPAVTADAGSS
(restricted) Ga0255334_10106633	3300031237	Sandy Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYRLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEEQP
(restricted) Ga0255312_10017217	3300031248	Sandy Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYRLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARLGELLRFLEGQPAPTAPPGAAAETSS
(restricted) Ga0255312_10319743	3300031248	Sandy Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYSLNQLRHTEAQMGLGAALACALVGLFIFSNLMARLSEVLRF
Ga0307505_102181992	3300031455	Soil	MSNGRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQSQAQMGLGVALGCALVGLFIFSNLMGRLGEVLRFLEEQPAPVT
Ga0310888_107393971	3300031538	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQD
Ga0307469_109628002	3300031720	Hardwood Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQHDAAGSA
Ga0307469_123652462	3300031720	Hardwood Forest Soil	MSNSRTYTLRNAASIVFALTAVIPLLLFTYTLYLLGQLGQFQAQMGLGVALGCALVGLFIFSNLMARL
Ga0307479_108772432	3300031962	Hardwood Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYTLNQLGHSQAQMGLATALACALVGLFIFSNLMGRLAEVLRYLEEQAPTPATATAPGSSGDSLNGAEGASASSNAPRVA
Ga0310902_105892092	3300032012	Soil	MSRGRTYTLRTAASIVFALTAVIPLLLFTYTLYSLDLLKVTQAQMGLGTALACALVGLFIFSNLMGRLSEVLRYLDEREVSD
Ga0307470_107506421	3300032174	Hardwood Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKRTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQHDA
Ga0307471_1004000601	3300032180	Hardwood Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDGAGRAGI
Ga0307471_1037069852	3300032180	Hardwood Forest Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLGHSQAQMGLATALACALVGLFIFSNLMGRLAEVLRYLEEQAPTPATATAPGSSGDSLNGAEGASASSNAPGV
Ga0316624_107264502	3300033486	Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLRLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYIEE
Ga0326731_10080721	3300033502	Peat Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLRLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYIEEQEGTARPGAVAPT
Ga0373948_0204846_2_259	3300034817	Rhizosphere Soil	MSRGRTYTLRNAASIVFALTAVIPLLLFTYTLYALNQLKLTEAQMGLGVALACALVGLFIFSNLMARLSEVLRYLEEQQDAAARPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087524

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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