Metagenome / Metatranscriptome Family F087521

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087521
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	80 residues
Representative Sequence	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRAIEIRDSLQALSKTA
Number of Associated Samples	61
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.55 %
% of genes near scaffold ends (potentially truncated)	20.00 %
% of genes from short scaffolds (< 2000 bps)	53.64 %
Associated GOLD sequencing projects	49
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.455 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.273 % of family members)
Environment Ontology (ENVO)	Unclassified (54.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (93.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.82% β-sheet: 3.64% Coil/Unstructured: 74.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF12779	WXXGXW	19.09
PF07043	DUF1328	15.45
PF02358	Trehalose_PPase	10.00
PF01594	AI-2E_transport	6.36
PF00982	Glyco_transf_20	4.55
PF00072	Response_reg	3.64
PF05974	DUF892	3.64
PF01204	Trehalase	1.82
PF05532	CsbD	1.82
PF11752	DUF3309	1.82
PF02310	B12-binding	1.82
PF13185	GAF_2	1.82
PF13545	HTH_Crp_2	0.91
PF01712	dNK	0.91
PF12732	YtxH	0.91
PF02518	HATPase_c	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	15.45
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	10.00
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	6.36
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	4.55
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	3.64
COG1626	Neutral trehalase	Carbohydrate transport and metabolism [G]	1.82
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.82
COG1428	Deoxyadenosine/deoxycytidine kinase	Nucleotide transport and metabolism [F]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.45 %
Unclassified	root	N/A	34.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.45 %
Unclassified	root	N/A	34.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.45 %
Unclassified	root	N/A	34.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.36 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.36 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	4.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.73 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4.55 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001084\|JGI12648J13191_1000012	All Organisms → cellular organisms → Bacteria	21200	Open in IMG/M
3300001131\|JGI12631J13338_1002440	All Organisms → cellular organisms → Bacteria	4162	Open in IMG/M
3300001151\|JGI12713J13577_1000016	All Organisms → cellular organisms → Bacteria	91168	Open in IMG/M
3300001593\|JGI12635J15846_10015646	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6309	Open in IMG/M
3300003224\|JGI26344J46810_1001683	All Organisms → cellular organisms → Bacteria → Acidobacteria	1503	Open in IMG/M
3300003367\|JGI26338J50219_1002430	All Organisms → cellular organisms → Bacteria → Acidobacteria	1339	Open in IMG/M
3300003370\|JGI26337J50220_1007533	All Organisms → cellular organisms → Bacteria → Acidobacteria	1289	Open in IMG/M
3300003370\|JGI26337J50220_1007562	Not Available	1288	Open in IMG/M
3300003505\|JGIcombinedJ51221_10077308	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300004080\|Ga0062385_10102720	Not Available	1387	Open in IMG/M
3300004092\|Ga0062389_100055104	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3210	Open in IMG/M
3300004092\|Ga0062389_100537914	Not Available	1322	Open in IMG/M
3300004092\|Ga0062389_101532305	Not Available	850	Open in IMG/M
3300004635\|Ga0062388_100207315	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300005541\|Ga0070733_10008180	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	6699	Open in IMG/M
3300005591\|Ga0070761_10002380	All Organisms → cellular organisms → Bacteria	11554	Open in IMG/M
3300005591\|Ga0070761_10002536	All Organisms → cellular organisms → Bacteria	11174	Open in IMG/M
3300005591\|Ga0070761_10002715	All Organisms → cellular organisms → Bacteria	10769	Open in IMG/M
3300005591\|Ga0070761_10011014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5094	Open in IMG/M
3300005591\|Ga0070761_10195021	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1199	Open in IMG/M
3300005591\|Ga0070761_10317543	Not Available	940	Open in IMG/M
3300005602\|Ga0070762_10012874	All Organisms → cellular organisms → Bacteria → Proteobacteria	4240	Open in IMG/M
3300005602\|Ga0070762_10016898	All Organisms → cellular organisms → Bacteria	3754	Open in IMG/M
3300005602\|Ga0070762_10147940	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300005602\|Ga0070762_10238830	Not Available	1126	Open in IMG/M
3300005610\|Ga0070763_10064245	Not Available	1779	Open in IMG/M
3300005712\|Ga0070764_10369472	Not Available	842	Open in IMG/M
3300005921\|Ga0070766_11276942	Not Available	509	Open in IMG/M
3300006176\|Ga0070765_100002870	All Organisms → cellular organisms → Bacteria	10958	Open in IMG/M
3300006176\|Ga0070765_100180920	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300009623\|Ga0116133_1024821	Not Available	1482	Open in IMG/M
3300009624\|Ga0116105_1000006	All Organisms → cellular organisms → Bacteria	108698	Open in IMG/M
3300009698\|Ga0116216_10641730	Not Available	639	Open in IMG/M
3300010343\|Ga0074044_10055924	Not Available	2695	Open in IMG/M
3300010343\|Ga0074044_10469576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300010343\|Ga0074044_10850004	Not Available	596	Open in IMG/M
3300010379\|Ga0136449_100081385	All Organisms → cellular organisms → Bacteria	6827	Open in IMG/M
3300014489\|Ga0182018_10082082	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1911	Open in IMG/M
3300014501\|Ga0182024_10002638	All Organisms → cellular organisms → Bacteria	44092	Open in IMG/M
3300014501\|Ga0182024_10058732	All Organisms → cellular organisms → Bacteria	5971	Open in IMG/M
3300017946\|Ga0187879_10002150	All Organisms → cellular organisms → Bacteria	13450	Open in IMG/M
3300020579\|Ga0210407_10001371	All Organisms → cellular organisms → Bacteria	23136	Open in IMG/M
3300020580\|Ga0210403_10010729	All Organisms → cellular organisms → Bacteria	7448	Open in IMG/M
3300020580\|Ga0210403_10269061	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300020582\|Ga0210395_10057194	All Organisms → cellular organisms → Bacteria	2860	Open in IMG/M
3300020583\|Ga0210401_10020439	All Organisms → cellular organisms → Bacteria	6360	Open in IMG/M
3300020583\|Ga0210401_10860057	Not Available	766	Open in IMG/M
3300020583\|Ga0210401_11354180	Not Available	569	Open in IMG/M
3300021170\|Ga0210400_10087182	All Organisms → cellular organisms → Bacteria	2459	Open in IMG/M
3300021170\|Ga0210400_11083042	Not Available	649	Open in IMG/M
3300021171\|Ga0210405_10208653	Not Available	1548	Open in IMG/M
3300021180\|Ga0210396_10038507	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4412	Open in IMG/M
3300021181\|Ga0210388_10016912	All Organisms → cellular organisms → Bacteria	5863	Open in IMG/M
3300021181\|Ga0210388_10027762	All Organisms → cellular organisms → Bacteria	4628	Open in IMG/M
3300021181\|Ga0210388_10094201	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2557	Open in IMG/M
3300021181\|Ga0210388_10321789	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300021401\|Ga0210393_10135704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1973	Open in IMG/M
3300021401\|Ga0210393_10146210	Not Available	1898	Open in IMG/M
3300021401\|Ga0210393_10223325	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300021405\|Ga0210387_10117708	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300021405\|Ga0210387_10118246	All Organisms → cellular organisms → Bacteria → Acidobacteria	2236	Open in IMG/M
3300021405\|Ga0210387_10125289	All Organisms → cellular organisms → Bacteria	2175	Open in IMG/M
3300021405\|Ga0210387_10140044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2061	Open in IMG/M
3300021406\|Ga0210386_10104071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2331	Open in IMG/M
3300021406\|Ga0210386_11323187	Not Available	606	Open in IMG/M
3300021407\|Ga0210383_10145685	All Organisms → cellular organisms → Bacteria	2011	Open in IMG/M
3300021407\|Ga0210383_10486715	Not Available	1065	Open in IMG/M
3300021420\|Ga0210394_10001881	All Organisms → cellular organisms → Bacteria	31198	Open in IMG/M
3300021477\|Ga0210398_10329293	Not Available	1246	Open in IMG/M
3300021477\|Ga0210398_11517187	Not Available	521	Open in IMG/M
3300022716\|Ga0242673_1049962	Not Available	702	Open in IMG/M
3300022734\|Ga0224571_117345	Not Available	524	Open in IMG/M
3300024227\|Ga0228598_1000060	All Organisms → cellular organisms → Bacteria	15974	Open in IMG/M
3300027334\|Ga0209529_1007864	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300027370\|Ga0209010_1000550	All Organisms → cellular organisms → Bacteria	11714	Open in IMG/M
3300027370\|Ga0209010_1009412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1832	Open in IMG/M
3300027559\|Ga0209222_1031127	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300027648\|Ga0209420_1153563	Not Available	630	Open in IMG/M
3300027701\|Ga0209447_10000345	All Organisms → cellular organisms → Bacteria	12408	Open in IMG/M
3300027701\|Ga0209447_10097181	Not Available	809	Open in IMG/M
3300027729\|Ga0209248_10034728	All Organisms → cellular organisms → Bacteria → Acidobacteria	1566	Open in IMG/M
3300027729\|Ga0209248_10063679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1125	Open in IMG/M
3300027737\|Ga0209038_10001551	All Organisms → cellular organisms → Bacteria	6838	Open in IMG/M
3300027768\|Ga0209772_10005164	All Organisms → cellular organisms → Bacteria	3427	Open in IMG/M
3300027768\|Ga0209772_10083500	Not Available	971	Open in IMG/M
3300027795\|Ga0209139_10057599	Not Available	1364	Open in IMG/M
3300027829\|Ga0209773_10051595	All Organisms → cellular organisms → Bacteria → Acidobacteria	1661	Open in IMG/M
3300027853\|Ga0209274_10001045	All Organisms → cellular organisms → Bacteria	14741	Open in IMG/M
3300027853\|Ga0209274_10002810	All Organisms → cellular organisms → Bacteria	8460	Open in IMG/M
3300027853\|Ga0209274_10158402	Not Available	1142	Open in IMG/M
3300027867\|Ga0209167_10001889	All Organisms → cellular organisms → Bacteria	11821	Open in IMG/M
3300027879\|Ga0209169_10001056	All Organisms → cellular organisms → Bacteria	16847	Open in IMG/M
3300027879\|Ga0209169_10289879	Not Available	859	Open in IMG/M
3300027884\|Ga0209275_10056218	Not Available	1909	Open in IMG/M
3300027884\|Ga0209275_10416485	Not Available	759	Open in IMG/M
3300028906\|Ga0308309_10000524	All Organisms → cellular organisms → Bacteria	24525	Open in IMG/M
3300031708\|Ga0310686_100197780	Not Available	945	Open in IMG/M
3300031708\|Ga0310686_100198957	Not Available	1099	Open in IMG/M
3300031708\|Ga0310686_101020037	All Organisms → cellular organisms → Bacteria	38789	Open in IMG/M
3300031708\|Ga0310686_105508390	Not Available	1085	Open in IMG/M
3300031708\|Ga0310686_105960375	All Organisms → cellular organisms → Bacteria	3155	Open in IMG/M
3300031708\|Ga0310686_107041157	All Organisms → cellular organisms → Bacteria	19429	Open in IMG/M
3300031708\|Ga0310686_109175470	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300031708\|Ga0310686_109275446	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1972	Open in IMG/M
3300031708\|Ga0310686_114351403	Not Available	548	Open in IMG/M
3300032160\|Ga0311301_10692061	All Organisms → cellular organisms → Bacteria → Acidobacteria	1436	Open in IMG/M
3300034163\|Ga0370515_0005452	All Organisms → cellular organisms → Bacteria → Proteobacteria	6259	Open in IMG/M
3300034163\|Ga0370515_0026239	All Organisms → cellular organisms → Bacteria → Acidobacteria	2651	Open in IMG/M
3300034163\|Ga0370515_0041497	Not Available	2052	Open in IMG/M
3300034163\|Ga0370515_0267057	Not Available	725	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.09%
Aquatic	Environmental → Aquatic	19.09%
Plants	Host-Associated → Plants	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.09%
Freshwater	Environmental → Aquatic → Freshwater	19.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.00%
Loam	Environmental → Terrestrial → Soil → Loam	30.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.82%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	30.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	17.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.27%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	20.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	16.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.18%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.73%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300003367	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022734	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3	Host-Associated	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12648J13191_100001215	3300001084	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQMCPFCDSSFAPDRYYVTESGAPLAVSGRTLDMQERLRALDKTA*
JGI12631J13338_10024402	3300001131	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEIQDSLSSFTKTA*
JGI12713J13577_100001660	3300001151	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAASGCTIEIQDSLSSFTKTA*
JGI12635J15846_100156464	3300001593	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPYCDSSFAPDRYYVTESGAPLAVSGRTLEMQDRVRALDKTA*
JGI26344J46810_10016832	3300003224	Bog Forest Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLRRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLQALSKTA*
JGI26338J50219_10024302	3300003367	Bog Forest Soil	MYTYLCCRCTKCTARIVXEEWAESMYLLRRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLQALSKTA*
JGI26337J50220_10075331	3300003370	Bog Forest Soil	VLEEWAESMYLLHRPLRPRPREQRCPFCESAFAPERYYVTESGAPLAVSGRAIEMRDSLQALSKTA*
JGI26337J50220_10075622	3300003370	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRAIEIRDSLQPLSKTA*
JGIcombinedJ51221_100773083	3300003505	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARARPRHQICPFCESAFAPERYYVTESGAPLAVSGRTVEMRDSLRSLSKTA*
Ga0062385_101027201	3300004080	Bog Forest Soil	ASAQAPVFGNHLGRHAMYTYLCCRCTKCSARIVLEEWAESMYLLHRPLRPRPREQRCPFCESAFAPERYYVTESGAPLAVSGRAIEMRDSLQALSKTA*
Ga0062389_1000551044	3300004092	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRHQMCPFCESSFAPDRYYVTESGAPLAVSGRPMEMPDPVQAFKKTA*
Ga0062389_1005379143	3300004092	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRHQVCPFCSAAFVPERYYVTESGAPLSVSGRAMEIQDSMRAFSKTA*
Ga0062389_1015323052	3300004092	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARARPRYQMCPFCDSAFAPDRYYVTESGAPLAVSGRTMEMPDPVHAFKKTA*
Ga0062388_1002073152	3300004635	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRARPRHQICPFCESAFAPERYYVTESGAPLAVSGSTVEMRDSLRSLGNTA*
Ga0070733_100081806	3300005541	Surface Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRARPRHQVCPFCESAFAPDRYYVTESGAPLAVSGRTVEMRDSSASLAKTA*
Ga0070761_100023804	3300005591	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARARPRHQICPFCESAFAPERYYVTESGAPLAVSGRTVEMRDSLHSLSKTA*
Ga0070761_100025365	3300005591	Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLHGPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLQALTKTA*
Ga0070761_1000271511	3300005591	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRTLEMQDRLRALDKTA*
Ga0070761_100110143	3300005591	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPPRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEIQDSLSSFTKTA*
Ga0070761_101950211	3300005591	Soil	HVSLLQVHKMRRADVLEEWAESMYLLHRPVRSRPRHQRCPFCDSSFAPDRYYVTESGAPLAVSGPTLDMQDRSRALDKLREAVEQLLKYFPQI*
Ga0070761_103175431	3300005591	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIEMRDSLQALSKTA*
Ga0070762_100128745	3300005602	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRTLEIQDRLGALDKTA*
Ga0070762_100168981	3300005602	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEMQDSVSSFTKTA*
Ga0070762_101479401	3300005602	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQKCPFCDSAFAPDRYYVTESGAPLAVSGRAMEMPDPLQAFKKTA
Ga0070762_102388302	3300005602	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRHQRCPFCDSSFAPDRYYVTESGAPLAVSGPTLDMQDRSRALDKTA*
Ga0070763_100642451	3300005610	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIELRDSLQALSKTA*
Ga0070764_103694721	3300005712	Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLHRPARPRPRHQMCPFCESSFAPERYYVTESGAPLAVSGRAIEMRDSLQALSKTA*
Ga0070766_112769421	3300005921	Soil	KCAARIVLEEWAESMYLLHRPVRSRPRHQRCPFCDSSFAPDRYYVTESGAPLAVSGPTLDMQDRSRALDKLREAVEQLLKYFPQI*
Ga0070765_10000287014	3300006176	Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRPLRPRPRHQMCPFCESSFAPERYYVTESAAPLAVSGRAIEVRSPLQALSKTA*
Ga0070765_1001809202	3300006176	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRSLEIQDRLGALDKTA*
Ga0116133_10248213	3300009623	Peatland	CCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQMCPFCESAFAPDRYYVTESGAPLSVSGRTVEMRDSLPPLSKTA*
Ga0116105_100000689	3300009624	Peatland	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQMCPFCESAFAPDRYYVTESGAPLSVSGRTVEMRDSLPPLSKTA*
Ga0116216_106417301	3300009698	Peatlands Soil	EEWAESMYLLHRPVRPRPRHQICPFCSSAFAPERYYVTESGAPLAVSVRAMEIQGTLRAFTKTA*
Ga0074044_100559242	3300010343	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRAIEIRDSLQALSKTA*
Ga0074044_104695762	3300010343	Bog Forest Soil	EEWAESMYLLRRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLQALSKTA*
Ga0074044_108500041	3300010343	Bog Forest Soil	WAESMYLLHRPVRPRPRHQMCPFCESSFAPERYYVTESGAPLAVSGRAIEMRDSLQALPKTA*
Ga0136449_1000813855	3300010379	Peatlands Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCSSAFAPERYYVTESGAPLAVSVRAMEIQGTLRAFTKTA*
Ga0182018_100820822	3300014489	Palsa	VLEEWAESMYLLHRPLRSRPRYQMCPFCDSSFAPDRYYVTESGARLAVSGRTLDMQDRPRALDKTA*
Ga0182024_1000263839	3300014501	Permafrost	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRHQVCPFCDAAFAPERCYVTESGAPLAVSGRAMEMQDSLRAFTKTA*
Ga0182024_100587321	3300014501	Permafrost	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRALEMQDRLRALDKTA*
Ga0187879_100021503	3300017946	Peatland	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQMCPFCESAFAPDRYYVTESGAPLSVSGRTVEMRDSLPPLSKTA
Ga0210407_1000137117	3300020579	Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRPVRSRPRHQVCPFCSAAFAPERYYVTESGAPLAVSARAMEMRDSLRSLSKTA
Ga0210403_100107298	3300020580	Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRPVRSRPRHQVCPFCSAAFAPERYYVTESGAPLAVSARAMEMRDSLHSLSKTA
Ga0210403_102690613	3300020580	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARARPRHQICPFCESAFAPERYYVTESGAPLAVSGRTVEMRDSLRSLSKTA
Ga0210395_100571944	3300020582	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPPRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTI
Ga0210401_100204395	3300020583	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGVPLCVSGRAIEMRDSLQALTKTA
Ga0210401_108600571	3300020583	Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRRVRPRPRYQRCPFCESAFAPERYYVTESGAPLAVSGCTIEMQDSSRAFTKTA
Ga0210401_113541801	3300020583	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIELRDSLQALSKTA
Ga0210400_100871822	3300021170	Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRSVRSRPRHQVCPFCSAAFAPERYYVTESGAPLAVSARAMEMRDSLRSLSKTA
Ga0210400_110830421	3300021170	Soil	FVMYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQICPFCESAFAPERYYVTESGVPLCVSGRAIEMREPLQALTKTA
Ga0210405_102086531	3300021171	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPPRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEIQDSLSSFTKTA
Ga0210396_100385072	3300021180	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQICPFCESAFAPERYYVTESGVPLCVSGRAIEMREPLQALTKTA
Ga0210388_100169123	3300021181	Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLHRPARPRPRHQMCPFCESSFAPERYYVTESGAPLAVSGRAIEMRDSLQALSKTA
Ga0210388_100277625	3300021181	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRTLEIQDRLGALDKTA
Ga0210388_100942015	3300021181	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEMQDSVSSFTKTA
Ga0210388_103217891	3300021181	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRTLEMQDRVSALDKTA
Ga0210393_101357044	3300021401	Soil	VMYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQICPFCESAFAPERYYVTESGVPLCVSGRAIEMREPLQALTKTA
Ga0210393_101462103	3300021401	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQMCPFCESAFAPDRYYVTESGAPLSVSGRTVEMRDSLPPLGRTA
Ga0210393_102233251	3300021401	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGCTIEMQDSLSSFTKTA
Ga0210387_101177083	3300021405	Soil	MYTYVCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHLVCPFCSEAFAPDRYYVTESGAPLAVSMPSTELQASSRAIGKTA
Ga0210387_101182463	3300021405	Soil	MLIFVRGGERVAPFFANYLGRHVMYTYLCCRCTKCSARIVLEEWAESMYLLHRRVRPRPRYQRCPFCESAFAPERYYVTESGAPLAVSGCTLEILDSSRAFTKSA
Ga0210387_101252892	3300021405	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQRCPFCESSFAPERYYVTESGAPLAVSGQSIELRDSLQALSKTA
Ga0210387_101400441	3300021405	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIELQDSLQALSKTA
Ga0210386_101040712	3300021406	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARARPRHQICPFCESAFAPERYYVTESGAPLAVSGRTVEMRDSLHSLSKTA
Ga0210386_113231871	3300021406	Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLHRPARPRPRHQMCPFCESSFAPERYYVTESGAPLAVSGRAIEMRDSLQALS
Ga0210383_101456853	3300021407	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRRRCQRCPFCDSSFAPDRYYVTESGAPLAVSGRSLEIQDRLGALDKTA
Ga0210383_104867152	3300021407	Soil	ARIGLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIELQDSLQALSKTA
Ga0210394_100018815	3300021420	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARSRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLRAFTKTA
Ga0210398_103292933	3300021477	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRHQRCPFCDSSFAPDRYYVTESGAPLAVSGPTLDMQDRSRALDKTA
Ga0210398_115171871	3300021477	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEMQDSLSSFTKTA
Ga0242673_10499621	3300022716	Soil	MYTYLCCRCTKCAARIVLEEWAESTYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIELRDSLQALSKTA
Ga0224571_1173451	3300022734	Rhizosphere	MYTYLCCRCTKCAARIVLEEWAESIYLLHRPVRPRPRHQRCPFCESAFAPERYYVTESGAPLAVSGCSIEMQDSSRSLSKTA
Ga0228598_10000601	3300024227	Rhizosphere	MYTYLCCRCTKCTARIVLEEWAESMYLLHRPVRARPRYQKCPFCDSAFAPDRYYVTESGAPLAVSGRTVEMRDSFALVEQDNVRTSKSS
Ga0209529_10078642	3300027334	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAASGCTIEIQDSLSSFTKTA
Ga0209010_100055013	3300027370	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQMCPFCDSSFAPDRYYVTESGAPLAVSGRTLDMQERLRALDKTA
Ga0209010_10094121	3300027370	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPLRPRPRQQRCPFCESTFAPERYYVTESGAPLAVSGCTIEIQDSLSSFTKTA
Ga0209222_10311272	3300027559	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPYCDSSFAPDRYYVTESGAPLAVSGRTLEMQDRVRALDKTA
Ga0209420_11535631	3300027648	Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRYQMCPFCDSSFAPDRYYVTESGAPLAVSGRTLEMQDRLRALDKTA
Ga0209447_100003458	3300027701	Bog Forest Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLRRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLQALSKTA
Ga0209447_100971811	3300027701	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQLCPFCESSFAPERYYVTESGAPLAVSGRPIEMPESPRVFTKTS
Ga0209248_100347282	3300027729	Bog Forest Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRPLRPRPREQRCPFCESAFAPERYYVTESGAPLAVSGRAIEMRDSLQAL
Ga0209248_100636792	3300027729	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRAIEIRDSLQPLSKTA
Ga0209038_100015513	3300027737	Bog Forest Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRPLRPRPREQRCPFCESAFAPERYYVTESGAPLAVSGRAIEMRDSLQALSKTA
Ga0209772_100051642	3300027768	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWADAMFLRHRPVCARSRHQVCPFCSAAFAPERYYVTESGAPLDVSRSSMEMHVSARAVGKTA
Ga0209772_100835002	3300027768	Bog Forest Soil	LCCRCTKCTARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRAIEIRDSLQPLSKTA
Ga0209139_100575991	3300027795	Bog Forest Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQLCPFCESSFAPERYYVTESGAPLAVSGRAIEMPDSARVSSKIA
Ga0209773_100515951	3300027829	Bog Forest Soil	MYTYLCCRCTKCAARIVLGEWAESMYLLHRPARPRPRHQLCPFCESSFAPERYYVTESGAPLAVSGRPIEMPESPRVFTKTS
Ga0209274_1000104511	3300027853	Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLHGPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRTIEIQDSLQALTKTA
Ga0209274_100028105	3300027853	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRTLEMQDRLRALDKTA
Ga0209274_101584022	3300027853	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIEMRDSLQALSKTA
Ga0209167_100018896	3300027867	Surface Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRARPRHQVCPFCESAFAPDRYYVTESGAPLAVSGRTVEMRDSSASLAKTA
Ga0209169_100010565	3300027879	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFARDRYYVTESGAPLAVSGRTLEMQDRLRALDKTA
Ga0209169_102898793	3300027879	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPMVVSGRRLEI
Ga0209275_100562183	3300027884	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRFQRCPFCDSSFAPDRYYVTESGAPLAVSGRSLEIQDRLGALDKTA
Ga0209275_104164851	3300027884	Soil	VMYTYLCCRCTKCAARIVLEEWAESMYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGQTIELRDSLQALSKTA
Ga0308309_100005244	3300028906	Soil	MYTYLCCRCTKCSARIVLEEWAESMYLLHRPLRPRPRHQMCPFCESSFAPERYYVTESAAPLAVSGRAIEVRSPLQALSKTA
Ga0310686_1001977803	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQMCPFCESSFAPERYYVTESGAPLTVSGRAIEMRDSLQALSKTA
Ga0310686_1001989571	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARPRPRHQMCPFCESSFAPERYYVTESGAPLIVSGRAPEMRDSLQALSKTA
Ga0310686_1010200378	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQRCPFCESAFAPERYYVTESGAPLAVSGCSIEMQDSSRSLSKTA
Ga0310686_1055083902	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRYQKCPFCESAFAPDRYYVTESGAPLAVSGRTIEMPDPLHAFKKTA
Ga0310686_1059603753	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPARARPRHQICPFCESAFAPERYYVTESGAPLAVSGRSVEMRDSLRSLSKTA
Ga0310686_1070411572	3300031708	Soil	MYTYLCCRCTKCTARIVLEEWAESMYLLHRPVRARPRYQKCPFCDSAFAPDRYYVTESGAPLAVSGRTVEMRDSFALVEQDSVRTSKSS
Ga0310686_1091754702	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRSRPRHQMCPFCESSFAPDRYYVTESGAPLAVSGRTLEMQDRSRALDKTA
Ga0310686_1092754462	3300031708	Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRARPRHQICPFCESTFAPERYYVTESGAPLAVSGCTVEMRDSLRSWSKTA
Ga0310686_1143514031	3300031708	Soil	RCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCESAFAPERYYVTESGAPLAVSGRAIEIRDSLQPLSKTA
Ga0311301_106920612	3300032160	Peatlands Soil	MYTYLCCRCTKCAARIVLEEWAESMYLLHRPVRPRPRHQICPFCSSAFAPERYYVTESGAPLAVSVRAMEIQGTLRAFTKTA
Ga0370515_0005452_6033_6209	3300034163	Untreated Peat Soil	MYLLHRPLRSRPRYQMCPFCDSSFAPDRYYVTESGARLAVSGRTLDMQDRPRALDKTA
Ga0370515_0026239_2472_2648	3300034163	Untreated Peat Soil	MYLLHRPMRPRPRYQMCPFCESSFAPERYYVTESGAPLAVSGRAIDVGNPLQALSKTA
Ga0370515_0041497_1701_1901	3300034163	Untreated Peat Soil	VLEEWAESMYLLHRPLRPRPREQRCPFCESAFAPERYYVTESGAPLAVSGRAIEMRDSLQALSKTA
Ga0370515_0267057_325_501	3300034163	Untreated Peat Soil	MYLLHRPMRPRPRQQRCPFCESAFAPERYYVTESGAPLAVSGRAIEIREPLQALSKTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087521

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences