Metagenome / Metatranscriptome Family F087519

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087519
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	64 residues
Representative Sequence	MTERLLKFPVKCPICATEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEDERQALAAKIRA
Number of Associated Samples	72
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.36 %
% of genes near scaffold ends (potentially truncated)	17.27 %
% of genes from short scaffolds (< 2000 bps)	65.45 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (43.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.66% β-sheet: 23.66% Coil/Unstructured: 52.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00583	Acetyltransf_1	6.36
PF03795	YCII	5.45
PF00578	AhpC-TSA	5.45
PF00593	TonB_dep_Rec	4.55
PF02311	AraC_binding	2.73
PF07715	Plug	2.73
PF04951	Peptidase_M55	2.73
PF02517	Rce1-like	1.82
PF04237	YjbR	1.82
PF03641	Lysine_decarbox	1.82
PF12146	Hydrolase_4	1.82
PF13826	DUF4188	1.82
PF13532	2OG-FeII_Oxy_2	1.82
PF01019	G_glu_transpept	1.82
PF00293	NUDIX	1.82
PF14329	DUF4386	0.91
PF06689	zf-C4_ClpX	0.91
PF12840	HTH_20	0.91
PF12704	MacB_PCD	0.91
PF05569	Peptidase_M56	0.91
PF14248	DUF4345	0.91
PF07282	OrfB_Zn_ribbon	0.91
PF14026	DUF4242	0.91
PF07690	MFS_1	0.91
PF01244	Peptidase_M19	0.91
PF00083	Sugar_tr	0.91
PF08774	VRR_NUC	0.91
PF00326	Peptidase_S9	0.91
PF00300	His_Phos_1	0.91
PF01230	HIT	0.91
PF08592	Anthrone_oxy	0.91
PF01066	CDP-OH_P_transf	0.91
PF04828	GFA	0.91
PF13560	HTH_31	0.91
PF13463	HTH_27	0.91
PF00067	p450	0.91
PF05656	DUF805	0.91
PF01323	DSBA	0.91
PF01694	Rhomboid	0.91
PF11839	Alanine_zipper	0.91
PF14559	TPR_19	0.91
PF12695	Abhydrolase_5	0.91
PF06411	HdeA	0.91
PF01145	Band_7	0.91
PF02611	CDH	0.91
PF02604	PhdYeFM_antitox	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.45
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.82
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	1.82
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.82
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	1.82
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.91
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.91
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.91
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.91
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	0.91
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG2134	CDP-diacylglycerol pyrophosphatase	Lipid transport and metabolism [I]	0.91
COG2124	Cytochrome P450	Defense mechanisms [V]	0.91
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.91
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.91 %
Unclassified	root	N/A	28.18 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.73 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.91 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.91 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	0.91 %
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
unclassified Acidocella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → unclassified Acidocella	0.91 %
Kineococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus	0.91 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Kineococcus siccus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus siccus	0.91 %
Acidocella sp. 20-57-95	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → unclassified Acidocella → Acidocella sp. 20-57-95	0.91 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001166\|JGI12694J13545_1018808	Not Available	657	Open in IMG/M
3300002245\|JGIcombinedJ26739_100252155	Not Available	1652	Open in IMG/M
3300004092\|Ga0062389_100759828	All Organisms → cellular organisms → Bacteria → Proteobacteria	1146	Open in IMG/M
3300004092\|Ga0062389_103438349	Not Available	593	Open in IMG/M
3300004104\|Ga0058891_1399655	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300004635\|Ga0062388_102629944	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300005534\|Ga0070735_10946168	Not Available	505	Open in IMG/M
3300005591\|Ga0070761_10741497	Not Available	616	Open in IMG/M
3300005602\|Ga0070762_10000785	All Organisms → cellular organisms → Bacteria → Proteobacteria	13961	Open in IMG/M
3300005602\|Ga0070762_10016260	All Organisms → cellular organisms → Bacteria	3815	Open in IMG/M
3300005712\|Ga0070764_10025465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2960	Open in IMG/M
3300005712\|Ga0070764_10893509	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005921\|Ga0070766_10282698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300005950\|Ga0066787_10006209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1819	Open in IMG/M
3300005952\|Ga0080026_10010416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2179	Open in IMG/M
3300005994\|Ga0066789_10003330	All Organisms → cellular organisms → Bacteria	7044	Open in IMG/M
3300006176\|Ga0070765_100015153	All Organisms → cellular organisms → Bacteria → Proteobacteria	5571	Open in IMG/M
3300006176\|Ga0070765_100318327	All Organisms → cellular organisms → Bacteria	1441	Open in IMG/M
3300009649\|Ga0105855_1250804	Not Available	547	Open in IMG/M
3300009662\|Ga0105856_1210029	Not Available	617	Open in IMG/M
3300012202\|Ga0137363_10987049	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300012924\|Ga0137413_10007432	All Organisms → cellular organisms → Bacteria → Proteobacteria	5145	Open in IMG/M
3300012929\|Ga0137404_11394799	Not Available	647	Open in IMG/M
3300014501\|Ga0182024_10007780	All Organisms → cellular organisms → Bacteria → Proteobacteria	22996	Open in IMG/M
3300014501\|Ga0182024_10018911	All Organisms → cellular organisms → Bacteria	12766	Open in IMG/M
3300014501\|Ga0182024_10065260	Not Available	5572	Open in IMG/M
3300014501\|Ga0182024_10683719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1269	Open in IMG/M
3300015160\|Ga0167642_1027401	All Organisms → cellular organisms → Bacteria	938	Open in IMG/M
3300015241\|Ga0137418_11146084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	550	Open in IMG/M
3300019886\|Ga0193727_1017379	All Organisms → cellular organisms → Bacteria → Proteobacteria	2631	Open in IMG/M
3300019887\|Ga0193729_1023617	All Organisms → cellular organisms → Bacteria	2645	Open in IMG/M
3300020021\|Ga0193726_1003546	All Organisms → cellular organisms → Bacteria → Proteobacteria	9902	Open in IMG/M
3300020021\|Ga0193726_1077792	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300020021\|Ga0193726_1109378	All Organisms → cellular organisms → Bacteria → Proteobacteria	1244	Open in IMG/M
3300020034\|Ga0193753_10138345	All Organisms → cellular organisms → Bacteria → Proteobacteria	1172	Open in IMG/M
3300020061\|Ga0193716_1107681	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300020199\|Ga0179592_10000019	All Organisms → cellular organisms → Bacteria → Proteobacteria	75731	Open in IMG/M
3300020199\|Ga0179592_10240095	Not Available	815	Open in IMG/M
3300020579\|Ga0210407_10018798	All Organisms → cellular organisms → Bacteria → Proteobacteria	5131	Open in IMG/M
3300020579\|Ga0210407_10058244	All Organisms → cellular organisms → Bacteria	2890	Open in IMG/M
3300020579\|Ga0210407_11108425	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300020580\|Ga0210403_10053362	All Organisms → cellular organisms → Bacteria → Proteobacteria	3234	Open in IMG/M
3300020580\|Ga0210403_10083629	All Organisms → cellular organisms → Bacteria → Proteobacteria	2576	Open in IMG/M
3300020580\|Ga0210403_10216115	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300020581\|Ga0210399_11236649	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300020582\|Ga0210395_10547363	All Organisms → cellular organisms → Bacteria → Proteobacteria	870	Open in IMG/M
3300021168\|Ga0210406_10019023	All Organisms → cellular organisms → Bacteria	6445	Open in IMG/M
3300021168\|Ga0210406_11329770	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300021170\|Ga0210400_10002796	All Organisms → cellular organisms → Bacteria → Proteobacteria	15783	Open in IMG/M
3300021170\|Ga0210400_10413175	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300021170\|Ga0210400_10661271	Not Available	860	Open in IMG/M
3300021180\|Ga0210396_10168307	Not Available	1965	Open in IMG/M
3300021181\|Ga0210388_10013636	All Organisms → cellular organisms → Bacteria → Proteobacteria	6499	Open in IMG/M
3300021181\|Ga0210388_10052748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3394	Open in IMG/M
3300021181\|Ga0210388_10641497	Not Available	927	Open in IMG/M
3300021401\|Ga0210393_10088792	All Organisms → cellular organisms → Bacteria → Proteobacteria	2454	Open in IMG/M
3300021404\|Ga0210389_10000156	All Organisms → cellular organisms → Bacteria → Proteobacteria	69023	Open in IMG/M
3300021404\|Ga0210389_10454703	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300021404\|Ga0210389_10643467	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300021404\|Ga0210389_11494003	Not Available	514	Open in IMG/M
3300021405\|Ga0210387_10008189	All Organisms → cellular organisms → Bacteria → Proteobacteria	7992	Open in IMG/M
3300021405\|Ga0210387_10345941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1313	Open in IMG/M
3300021405\|Ga0210387_10877224	Not Available	790	Open in IMG/M
3300021407\|Ga0210383_10005701	All Organisms → cellular organisms → Bacteria	10904	Open in IMG/M
3300021407\|Ga0210383_10126407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus siccus	2164	Open in IMG/M
3300021407\|Ga0210383_10291070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1404	Open in IMG/M
3300021407\|Ga0210383_11519368	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300021411\|Ga0193709_1038638	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300021479\|Ga0210410_11482679	Not Available	571	Open in IMG/M
3300023056\|Ga0233357_1054534	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300025463\|Ga0208193_1079022	Not Available	662	Open in IMG/M
3300026291\|Ga0209890_10010928	All Organisms → cellular organisms → Bacteria → Proteobacteria	3684	Open in IMG/M
3300026467\|Ga0257154_1010550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1264	Open in IMG/M
3300026557\|Ga0179587_10310986	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300026557\|Ga0179587_10318693	Not Available	1004	Open in IMG/M
3300027117\|Ga0209732_1005477	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300027609\|Ga0209221_1061017	Not Available	992	Open in IMG/M
3300027684\|Ga0209626_1086547	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300027692\|Ga0209530_1045897	Not Available	1285	Open in IMG/M
3300027879\|Ga0209169_10078836	All Organisms → cellular organisms → Bacteria	1701	Open in IMG/M
3300027895\|Ga0209624_10003550	All Organisms → cellular organisms → Bacteria	10972	Open in IMG/M
3300027895\|Ga0209624_10076944	Not Available	2157	Open in IMG/M
3300028014\|Ga0265345_108319	Not Available	517	Open in IMG/M
3300028016\|Ga0265354_1015243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300028906\|Ga0308309_10019564	All Organisms → cellular organisms → Bacteria → Proteobacteria	4442	Open in IMG/M
3300030730\|Ga0307482_1315868	Not Available	506	Open in IMG/M
3300030815\|Ga0265746_1008226	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300030872\|Ga0265723_1002715	Not Available	887	Open in IMG/M
3300030878\|Ga0265770_1001001	All Organisms → cellular organisms → Bacteria → Proteobacteria	3909	Open in IMG/M
3300030879\|Ga0265765_1058302	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300031057\|Ga0170834_104557661	Not Available	590	Open in IMG/M
3300031057\|Ga0170834_107802128	Not Available	547	Open in IMG/M
3300031057\|Ga0170834_111644825	Not Available	1098	Open in IMG/M
3300031090\|Ga0265760_10082005	All Organisms → cellular organisms → Bacteria → Proteobacteria	1000	Open in IMG/M
3300031128\|Ga0170823_16298660	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_111430485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → unclassified Acidocella → Acidocella sp. 20-57-95	732	Open in IMG/M
3300031231\|Ga0170824_123394045	Not Available	914	Open in IMG/M
3300031474\|Ga0170818_104027585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3232	Open in IMG/M
3300031708\|Ga0310686_104990427	All Organisms → cellular organisms → Bacteria	19375	Open in IMG/M
3300031708\|Ga0310686_105380712	All Organisms → cellular organisms → Bacteria	18077	Open in IMG/M
3300031708\|Ga0310686_106013757	All Organisms → cellular organisms → Bacteria → Proteobacteria	3613	Open in IMG/M
3300031708\|Ga0310686_110238078	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300031715\|Ga0307476_10001847	All Organisms → cellular organisms → Bacteria → Proteobacteria	12784	Open in IMG/M
3300031715\|Ga0307476_10112908	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300031715\|Ga0307476_10471788	Not Available	929	Open in IMG/M
3300031715\|Ga0307476_10786095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	704	Open in IMG/M
3300031718\|Ga0307474_10144103	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1795	Open in IMG/M
3300031823\|Ga0307478_11021652	Not Available	691	Open in IMG/M
3300032174\|Ga0307470_10394288	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300032180\|Ga0307471_102905900	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.45%
Aquatic	Environmental → Aquatic	3.64%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.55%
Freshwater	Environmental → Aquatic → Freshwater	3.64%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.18%
Loam	Environmental → Terrestrial → Soil → Loam	17.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.09%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.27%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015160	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023056	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS2	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028014	Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE2	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030872	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12694J13545_10188082	3300001166	Forest Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKEHEREALANKIRT*
JGIcombinedJ26739_1002521552	3300002245	Forest Soil	MTERLLKFQVKCPICDTEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEHERQALAAKIRA*
Ga0062389_1007598282	3300004092	Bog Forest Soil	MTERLLKFPVKCPICGTEWTTALSVSAIKESLDKGTPIRAYAECHDWGWDLKEEERQALAARIRT*
Ga0062389_1034383491	3300004092	Bog Forest Soil	VTERLFKFPVKCPICNTEWTCALSVTEIRGSLDKGTPIRAYAECHDWHWELKEEERLALAAKIRG*
Ga0058891_13996552	3300004104	Forest Soil	MTERLFKFAVKCPICATEWTCALSVSDIKESLDKGTPIRAYAECHDWGWDLKEDERQALAAKLRA*
Ga0062388_1026299442	3300004635	Bog Forest Soil	MTERLLKFPVKCPICGTEWTTALSVSAIKESLDKGTPIRAYAECHDWGWDLKEEERQALA
Ga0070735_109461681	3300005534	Surface Soil	MTERLLKFAVKCPICSTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKPEERQALATKLAS*
Ga0070761_107414972	3300005591	Soil	MTERLLKFPVKCPICATEWTCALSVTEIKESLDKGTPIRAYAECHDWAWDLKEEERQALAAKLRA*
Ga0070762_1000078513	3300005602	Soil	MTERLLKFPVKCPICDTEWTCALSVTEIKESLDRGTPIRAYAECHDWHWDLKEHERQALAAKVRA*
Ga0070762_100162601	3300005602	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIRAYAECHDWHWDLKEHERDALASKIRT*
Ga0070764_100254651	3300005712	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKEHEREALASKIRT*
Ga0070764_108935092	3300005712	Soil	MTERLFKFPVKCPICNTEWTCALSVTEIRESLDKGTPIRAYAECHDWHWELKEEERQALAAKIRA*
Ga0070766_102826981	3300005921	Soil	MTERLLKFPVHCPICASEWTCALSVTEIKESLDKGTPIRAYAECHDWHWDLKEAERQALAAKIRA*
Ga0066787_100062092	3300005950	Soil	MTERLLKFPVNCPVCGTEWTCALSVSTIKESLDKGTPIPAYAECHDWNWDLKEAERKALAAKIR*
Ga0080026_100104164	3300005952	Permafrost Soil	MTERLLKFPVKCPICDTEWTCALSVAQIKESLYKGTPIRAYAECHDWHWDLKEDERQALGAKIRS*
Ga0066789_100033305	3300005994	Soil	MTERLLKFPVKCPICGTEWTSALSVSEIKDSLDKGTPIRAYAECHDWAWDLKEEERQALSAKINA*
Ga0070765_10001515312	3300006176	Soil	CPICNTEWTCALSVTEIRESLDKGTPIRAYAECHDWHWELKEEERQALAAKIRA*
Ga0070765_1003183272	3300006176	Soil	MTERLLKFPVKCPICATEWTSALSVSQIKESLDQGTPIRAYAECHDWHWDLKEDERQALAAKIRA*
Ga0105855_12508042	3300009649	Permafrost Soil	VNCPICGKEWSCASSVTDIKESLKKGTPIRAYAECHDWTWDLKDEERQALSTKVGA*
Ga0105856_12100292	3300009662	Permafrost Soil	ANTTTAMTERLFRFPVNCPICGKEWSCASSVTDIKESLKKGTPIRAYAECHDWTWDLKDEERQALSTKVGA*
Ga0137363_109870492	3300012202	Vadose Zone Soil	MTERLLKFPVHCPICNTEWTCALSVTQIKESLDKGSPIRAYAECHDWHWDLKEHERQALAAKIRA*
Ga0137413_100074323	3300012924	Vadose Zone Soil	MTERLLKFPVKCPICSTEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEDERQALAAKLRA*
Ga0137404_113947992	3300012929	Vadose Zone Soil	MTERLLKFPVHCPICNTEWTCALSVTQIKESLDKGTPIRAYAECHDWHWDLKEHERQALAAKIRA*
Ga0182024_1000778017	3300014501	Permafrost	MTERLLKFPVKCPICATEWTCALSVSEIKESLDKGNPIRAYAECHDWGWDLKEEERQALAAKVRA*
Ga0182024_1001891111	3300014501	Permafrost	MTERLLKFPVKCPICETEWTCALSVTQIKESLDSGTPIRAYAECHDWHWDLKEHERQALAAKI*
Ga0182024_100652606	3300014501	Permafrost	MTERLLKFPVKCPICATEWTCALSVTEIRESLDKGTPIRAYAECHDWHWDLKEEERQALAAKIRT*
Ga0182024_106837192	3300014501	Permafrost	MTERLLKFPVKCPICATEWTCALSVTQIKESLDRATPIRAYAECHDWHWDLKEDERQALAAKIRA*
Ga0167642_10274012	3300015160	Glacier Forefield Soil	MTERLLKFPVKCPICATEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEEERQALSAKLRA*
Ga0137418_111460841	3300015241	Vadose Zone Soil	KFPVKCPICSTEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEDERQALSAKLRA*
Ga0193727_10173796	3300019886	Soil	MTERLLKFPVKCPICSTEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEDERQALAAKLRA
Ga0193729_10236174	3300019887	Soil	MTERLLKFPVKCPICSTEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEEERQALSAKLRA
Ga0193726_10035466	3300020021	Soil	MTERLLKFPVKCPICSTEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEDERQALSAKLRA
Ga0193726_10777922	3300020021	Soil	MTERLIKFPVKCPICDTEWTCALSVTEIKESLAKGTPIRAYAECHDWHWELKEGERQALAAKIQA
Ga0193726_11093782	3300020021	Soil	MTERLLKFPVKCPICATERSCALSVTQIKESLDKGTPIHAYAECHDWHWDLKEDERAVLAAKIA
Ga0193753_101383453	3300020034	Soil	QIAHPTYALKDSASMTERLFQFPVKCPICDTEWTCALSVTEIRESLGKGTPIRAYAECHDWHWELKEEERQALAAKIQA
Ga0193716_11076812	3300020061	Soil	MTERLLKFPVKCPICATEWTCALSVSEIKESLANGTRIRAYAECHDWAWDLKEEERQALSAKLRA
Ga0179592_1000001967	3300020199	Vadose Zone Soil	MTERLLKFPVHCPICNTEWTCALSVTQIKESLDKGTPIRAYAECHDWHWDLKEHERQALAAKIRA
Ga0179592_102400951	3300020199	Vadose Zone Soil	MTERLLKFPVKCPICGTEWTCALSVTEIKESLDTGTPIRAYAECHDWAWDLKEEERQALSAKL
Ga0210407_100187982	3300020579	Soil	VTERLLKFPVKCPICATEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEEERQALSAKLRA
Ga0210407_100582441	3300020579	Soil	MTERLFKFAVKCPICATEWTCALSVSDIKESLDKGTPIRAYAECHDWGWDLKEDERQALAAKLRA
Ga0210407_111084252	3300020579	Soil	RLLKFPVLCPICNTEWTCALSVTEIKKSLETGVPIRAYAECHDWHWDLKEDERQALAAKIRG
Ga0210403_100533622	3300020580	Soil	MTERLVKFPVKCPICATESTIALSVTQIKESLDKGTPIPAYAECHDWHWNLKENERQALAAKL
Ga0210403_100836292	3300020580	Soil	MTERLLKFPVLCPICNTEWTCALSVTEIKKSLETGVPIRAYAECHDWHWDLKEDERQALAAKIRG
Ga0210403_102161153	3300020580	Soil	MTERLLKFPVKCPICATEWTSALSVSQIKESLDQGTPIRAYAECHDWHWDLKEDERQALAAKIRA
Ga0210399_112366492	3300020581	Soil	TAAMTERLLKFPVKCPICATEWTSALSVSQIKESLDQGTPIRAYAECHDWHWDLKEDERQALAAKIRA
Ga0210395_105473631	3300020582	Soil	GERLTFVTERLLKFPVKCPICETEWTCALSVSEIKESLEKGTPIRAYAECHDWHWDLKEHERQALAAKL
Ga0210406_1001902313	3300021168	Soil	MTERLLKFPVKCPICAMEWTIALSVTQIKESLDKGTPIPAYAECHDWHWDLKEDERQALAAKL
Ga0210406_113297702	3300021168	Soil	MTERLLKFPVLCPICNTEWTCALSVTEIKKSLETGIPIRAYAECHDWHWDLKEDERQALAAKLRA
Ga0210400_1000279612	3300021170	Soil	MTERLLKFPVKCPICATEWTIALSVTQIKESLDKGTPIPAYAECHDWHWNLKESERQALAAKL
Ga0210400_104131752	3300021170	Soil	MTERLLKFPVKCPICETEWTCALSVTEIKESLDRGTPIRAYAECHDWHWDLKEHERQALAAKVRA
Ga0210400_106612711	3300021170	Soil	MTERLLKFPVNCPICATEWTCALSVTQIKESLDKGTPIRAYAECHDWHWDLKEDERQALADKIRA
Ga0210396_101683072	3300021180	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKEHEREALASKIRT
Ga0210388_100136362	3300021181	Soil	MTERLLKFPVKCPICDTEWTCALSVTEIKESLDRGTPIRAYAECHDWHWDLKEHERQALAAKVRA
Ga0210388_100527482	3300021181	Soil	MTERLFKFPVKCPICNTEWTCALSVTEIRESLDKGTPIRAYAECHDWHWELKEEERQALAAKIRA
Ga0210388_106414971	3300021181	Soil	MTERLLKFPVKCPICSTEWTCAMSVTEIKESLDKGAPIPAYAECHDWHWDLKEDERQTLAAKLRA
Ga0210393_100887922	3300021401	Soil	MTERLLKFPVKCPICATEWTCALSVTEIKESLDKGAPIRAYAECHDWAWDLKEEERQALAAKLRA
Ga0210389_1000015647	3300021404	Soil	MTERLLKFPVKCPICATEWTSALSVTQIKESLDKGTPIRAYAECHDWHWDLKEDERQALAAKIRS
Ga0210389_104547032	3300021404	Soil	MTERLFKFPVKCPICNTEWTCALSVTEIRESLDKGTPIRAYAECHDWHWELKEEERQALAAKTRP
Ga0210389_106434671	3300021404	Soil	KETAAMTERLLKFPVLCPICNTEWTCALSVTEIKKSLETGVPIRAYAECHDWHWDLKEDERQALAAKIRG
Ga0210389_114940031	3300021404	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKEHERDALASKIRT
Ga0210387_100081894	3300021405	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIRAYAECHDWHWDLKEHERDALASKIRT
Ga0210387_103459412	3300021405	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLADGSPIRAYAECHDWHWELKQEERQALAAKIQA
Ga0210387_108772241	3300021405	Soil	MTERLLKFPVNCPICGTEWTCALSVTQLKESIENGTPISAYAECHDWTWDLKEHEREALAAKLRA
Ga0210383_100057017	3300021407	Soil	MTERLLKFPVKCPICGTEWTCALSVTQIKESLDKGTPIGAYAECHDWHWDLKEHERQALAAKLRA
Ga0210383_101264074	3300021407	Soil	MTERLLKFPVKCPICATEWTSALSVSQIKESLDQGTPIRVYAECHDWHWDLKEDERQALAAKIRA
Ga0210383_102910701	3300021407	Soil	VTERLLKFPVKCPICETEWTCALSVSEIKESLEKGTPIRAYAECHDWHWDLKEHERQALAAKL
Ga0210383_115193681	3300021407	Soil	MTERLLKFPVKCPICDTEWTCAMSVTQIKESLDKGTPIPAYAECHDWHWDLKEDERKALAAKIRA
Ga0193709_10386382	3300021411	Soil	MTERLLKFPVKCPICSTEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEDERQALSSKLRA
Ga0210410_114826791	3300021479	Soil	MTERLLKFPVKCPICSTEWTCALSVSVIKESLDKGTPIRAYAECHDWHWDLKEGERQALAAKLRA
Ga0233357_10545341	3300023056	Soil	MTERLLKFAVKCPICATEWTCALSVSELKESLDKGNPIRAYAECHDWGWDLKEEERQALSAKLRA
Ga0208193_10790222	3300025463	Peatland	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKEHEREALANKIRT
Ga0209890_100109284	3300026291	Soil	MTERLLKFPVKCPICGTEWTSALSVSEIKDSLDKGTPIRAYAECHDWAWDLKEEERQALSAKINA
Ga0257154_10105502	3300026467	Soil	MTERLLKFPVKCPICDTEWTCALSVTEIKESLDRGTPIRAYAECHDWHWDLKEHERQALAAKIRA
Ga0179587_103109862	3300026557	Vadose Zone Soil	MTERLLKFPVKCPICATEWTCALSVSEIKESLDKGTPIRAYAECHDWGWDLKEDERRALSAKLRA
Ga0179587_103186932	3300026557	Vadose Zone Soil	MTERLLKFPVKCPICGTEWTCALSVTEIKESLDTGTPIRAYAECHDWAWDLKEEERQALSAKLRA
Ga0209732_10054773	3300027117	Forest Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEHERQALAAKIRA
Ga0209221_10610172	3300027609	Forest Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLK
Ga0209626_10865471	3300027684	Forest Soil	MTERLLKFPVKCPICATEWTCALSVSELKESLDKGTPIRAYAECHDWAWDLKEEERQVLSAKLRA
Ga0209530_10458973	3300027692	Forest Soil	MTERLLKFPVKCPICDTEWTCALSVTQIKESLEKGTPIPAYAECHDWHWDLKEHEREALANKIRT
Ga0209169_100788363	3300027879	Soil	MTERLLKFPVKCPICNTEWTCALSVTQIKESLEKGTPIRAYAECHDWHWDLKEHEREALASKIRT
Ga0209624_100035505	3300027895	Forest Soil	MTERLLKFPVKCPICATEWTCALSVSELKESLDKGTPIRAYAECHDWAWDLKEDERQALSAKLRA
Ga0209624_100769442	3300027895	Forest Soil	MTERLLKFQVKCPICDTEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEHERQALAAKIRA
Ga0265345_1083191	3300028014	Plant Litter	MTERLLKFPVRCPICSTEWTCALSVTQIKESLDQGTPIRAYAECHDWHWDLKEDERAILAAKIRA
Ga0265354_10152432	3300028016	Rhizosphere	MTERLLKFPVHCPICASEWTCALSVTEIKESLDKGTPIRAYAECHDWHWDLKEAERQALAAKIRS
Ga0308309_100195642	3300028906	Soil	MTERLFKFPVKCPICNTEWTCALSFTEIRESLDKGTPIRAYAECHDWHWELKEEERQALAAKIRA
Ga0307482_13158681	3300030730	Hardwood Forest Soil	MTERLLKFPVKCPICATEWTSALSVTQIKESLDKGTPIRAYAECHDWHWDLKEDE
Ga0265746_10082261	3300030815	Soil	MTERLLKFPVRCPICATEWTCALSVSQIKESLDNGTPIRAYAECHDWHWDLKEEERQALAAKIRA
Ga0265723_10027152	3300030872	Soil	MTERLLKFPVRCPICSTEWTCALSVTQIKESLDQGTPIRAYAGCHDWHWDLKEDERAILAAKIRA
Ga0265770_10010011	3300030878	Soil	ERLLKFPVHCPICASEWTCALSVTEIKESLDKGTPIRAYAECHDWHWDLKEAERQALAAKIRS
Ga0265765_10583022	3300030879	Soil	DAMTERLLKFPVHCPICASEWTCALSVTEIKESLDKGTPIRAYAECHDWHWDLKEAERQALAAKIRS
Ga0170834_1045576612	3300031057	Forest Soil	MTERLLKFPVKCPICETEWTCALSVTQITESLDKGTPIPAYAECHDWHWDLKENERQALAAKIRA
Ga0170834_1078021282	3300031057	Forest Soil	MTERLLKFPVKCPICATEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEDERQALAAKIRA
Ga0170834_1116448251	3300031057	Forest Soil	MTERLLKFPVLCPICNTEWTCALSVTEIKESLEKGVPIRAYAECHDWHWDLKEDERQALAAKLRA
Ga0265760_100820052	3300031090	Soil	MTERLLKFPVHCPICATECTCALSVTEIKESLDQGTPIRAYAECHDWHWELKEEERQALAAKIRA
Ga0170823_162986602	3300031128	Forest Soil	MTERLLKFPVKCPICETEWTCALSVTQIAESLDKGTPIPAYAECHDWHWDLKENERQALAAKIRA
Ga0170824_1114304851	3300031231	Forest Soil	MTERLLKFPVKCPICATEWPCALSVTQIKESLEKGTPIHAYAECHDWHWDLKEDERAVLAAKIA
Ga0170824_1233940451	3300031231	Forest Soil	TERLLKFPVKCPICSTEWTCALSVTQIKESLDRGSPIRAYAECHDWHWDLKEDERQALAAKLRS
Ga0170818_1040275853	3300031474	Forest Soil	MTERLLKFPVKCPICATEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEDERALLAAKIA
Ga0310686_1049904275	3300031708	Soil	MTERLLKFPVQCPICSTEWTCALSVTQIKESLAKGTPIPAYAECHDWHWDLKEHERQALATKLQA
Ga0310686_10538071212	3300031708	Soil	MTERLLKFPVMCPICATEWTCALSVSEIKESLEKGTPIRAYAECHDWHWDLKEHERQALAAKL
Ga0310686_1060137574	3300031708	Soil	MTERLLKFPVHCPICASEWTCALSVTEIKESLDKGTPIRAYAECHDWHWDLKEEERQALAAKIRA
Ga0310686_1102380782	3300031708	Soil	MTERLLKFPVHCPICATEWTCALSVTQIKESLDNGTPIRAYAECHDWHWDLKQEERQALAAKLRT
Ga0307476_1000184711	3300031715	Hardwood Forest Soil	MTERLLKFPVHCPICASEWTCALSVTEIKESLDKGTPIRAYAECHDWHWDLKEAERQALAAKIRA
Ga0307476_101129082	3300031715	Hardwood Forest Soil	MTERLLKFPVKCPICATEWTCALSVTEIRESLDRGTPIRAYAECHDWHWDLKEHERQALAAKIRA
Ga0307476_104717882	3300031715	Hardwood Forest Soil	MTERLFKFPVKCPICNTEWTCAMSVTEIRESLDKGTPIRAYAECHDWHWELKEEERQALAAKTRP
Ga0307476_107860952	3300031715	Hardwood Forest Soil	MTERLLKFSVKCPICDTEWTCALSVTQIKESLDKGTPIPAYAECHDWHWDLKEHERQALATKIRA
Ga0307474_101441034	3300031718	Hardwood Forest Soil	MTERLLKFPVKCPICGTEWTCALSVTQIKESLDKGTPIRAYAECHDWHWDLK
Ga0307478_110216522	3300031823	Hardwood Forest Soil	DKTKDRYADPREESTSMTERLLKFPVKCPICSTEWTCAMSVTEIKESLDKGAPIPAYAECHDWHWDLKEDERQTLAAKLRA
Ga0307470_103942882	3300032174	Hardwood Forest Soil	MTERLLKFPVHCPICNTEWTCALSVTQIKESLDQGTPIRAYAECHDWHWDLKENERQALAAKLRA
Ga0307471_1029059002	3300032180	Hardwood Forest Soil	PICNTEWTCALSVTQIKESLDQGTPIRAYAECHDWHWDLKENERQALAAKLRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087519

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences