Metagenome / Metatranscriptome Family F087504

Basic Information
Family ID	F087504
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	45 residues
Representative Sequence	AKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAH
Number of Associated Samples	95
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (65.455 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (25.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.00% β-sheet: 0.00% Coil/Unstructured: 60.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF11453	DUF2950	14.55
PF00330	Aconitase	10.00
PF04338	DUF481	5.45
PF00440	TetR_N	5.45
PF02416	TatA_B_E	3.64
PF11528	DUF3224	2.73
PF13826	DUF4188	1.82
PF02742	Fe_dep_repr_C	1.82
PF04185	Phosphoesterase	1.82
PF07969	Amidohydro_3	0.91
PF02580	Tyr_Deacylase	0.91
PF14216	DUF4326	0.91
PF07676	PD40	0.91
PF13424	TPR_12	0.91
PF00694	Aconitase_C	0.91
PF13683	rve_3	0.91
PF00753	Lactamase_B	0.91
PF00069	Pkinase	0.91
PF13442	Cytochrome_CBB3	0.91
PF00216	Bac_DNA_binding	0.91
PF01288	HPPK	0.91
PF01850	PIN	0.91
PF01566	Nramp	0.91
PF02371	Transposase_20	0.91
PF11737	DUF3300	0.91
PF13620	CarboxypepD_reg	0.91
PF00145	DNA_methylase	0.91
PF00850	Hist_deacetyl	0.91
PF01979	Amidohydro_1	0.91
PF05593	RHS_repeat	0.91
PF00731	AIRC	0.91
PF01557	FAA_hydrolase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3137	Putative salt-induced outer membrane protein YdiY	Cell wall/membrane/envelope biogenesis [M]	5.45
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.64
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	3.64
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.82
COG1321	Mn-dependent transcriptional regulator MntR, DtxR family	Transcription [K]	1.82
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	1.82
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.91
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.91
COG0801	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis)	Coenzyme transport and metabolism [H]	0.91
COG1490	D-aminoacyl-tRNA deacylase	Translation, ribosomal structure and biogenesis [J]	0.91
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.91
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.45 %
Unclassified	root	N/A	34.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.45 %
Unclassified	root	N/A	34.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.45 %
Unclassified	root	N/A	34.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	0.91 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	4.55 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.91 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.91 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.91 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.91 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.91 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	4.55 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Methylobacterium radiodurans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium radiodurans	0.91 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.91 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.91 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	4.55 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Hyalangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium	0.91 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Methylobacterium radiodurans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium radiodurans	0.91 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.91 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	4.55 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
unclassified Hyalangium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium	0.91 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Methylobacterium radiodurans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium radiodurans	0.91 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.91 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.55 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	4.55 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Hyalangium sp. H56D21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21	0.91 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.91 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.91 %
Methylobacterium radiodurans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium radiodurans	0.91 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.91 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001169\|JGI12661J13543_102571	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	640	Open in IMG/M
3300001593\|JGI12635J15846_10174174	Not Available	1450	Open in IMG/M
3300002245\|JGIcombinedJ26739_101126256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	672	Open in IMG/M
3300004080\|Ga0062385_10512367	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300004091\|Ga0062387_100196409	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300004092\|Ga0062389_101906366	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300004152\|Ga0062386_100025119	All Organisms → cellular organisms → Bacteria	4383	Open in IMG/M
3300004152\|Ga0062386_100113401	All Organisms → cellular organisms → Bacteria	2092	Open in IMG/M
3300005541\|Ga0070733_10017613	All Organisms → cellular organisms → Bacteria	4460	Open in IMG/M
3300005541\|Ga0070733_10035016	All Organisms → cellular organisms → Bacteria	3132	Open in IMG/M
3300005591\|Ga0070761_10060583	All Organisms → cellular organisms → Bacteria	2137	Open in IMG/M
3300005602\|Ga0070762_10628325	Not Available	715	Open in IMG/M
3300005610\|Ga0070763_10014507	Not Available	3340	Open in IMG/M
3300005712\|Ga0070764_10406465	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005712\|Ga0070764_10595394	Not Available	674	Open in IMG/M
3300005921\|Ga0070766_11086842	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006047\|Ga0075024_100631234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	580	Open in IMG/M
3300006176\|Ga0070765_100385305	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300006893\|Ga0073928_10615074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	766	Open in IMG/M
3300009624\|Ga0116105_1051706	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300009628\|Ga0116125_1157837	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	631	Open in IMG/M
3300009644\|Ga0116121_1031772	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300009644\|Ga0116121_1147759	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300009698\|Ga0116216_10881457	Not Available	536	Open in IMG/M
3300009839\|Ga0116223_10709800	Not Available	577	Open in IMG/M
3300010379\|Ga0136449_101791028	Not Available	919	Open in IMG/M
3300010379\|Ga0136449_103473797	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300011120\|Ga0150983_12549141	Not Available	1764	Open in IMG/M
3300014501\|Ga0182024_10162852	All Organisms → cellular organisms → Bacteria	3112	Open in IMG/M
3300014658\|Ga0181519_10732812	Not Available	610	Open in IMG/M
3300017823\|Ga0187818_10154200	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300017933\|Ga0187801_10376854	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300017935\|Ga0187848_10112274	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300017943\|Ga0187819_10860756	Not Available	508	Open in IMG/M
3300017946\|Ga0187879_10337584	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300017948\|Ga0187847_10035447	All Organisms → cellular organisms → Bacteria → Acidobacteria	2934	Open in IMG/M
3300017948\|Ga0187847_10381449	Not Available	774	Open in IMG/M
3300017973\|Ga0187780_10471693	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300018037\|Ga0187883_10048305	Not Available	2258	Open in IMG/M
3300018040\|Ga0187862_10113094	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
3300018040\|Ga0187862_10561666	Not Available	680	Open in IMG/M
3300018044\|Ga0187890_10050838	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300018047\|Ga0187859_10064865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium radiodurans	1923	Open in IMG/M
3300018047\|Ga0187859_10206970	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Hyalangium → unclassified Hyalangium → Hyalangium sp. H56D21	1047	Open in IMG/M
3300018088\|Ga0187771_11400182	Not Available	593	Open in IMG/M
3300018090\|Ga0187770_11721192	Not Available	513	Open in IMG/M
3300019786\|Ga0182025_1177755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1929	Open in IMG/M
3300020580\|Ga0210403_11452940	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300020581\|Ga0210399_10613942	Not Available	899	Open in IMG/M
3300020582\|Ga0210395_10898531	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300020583\|Ga0210401_10086231	All Organisms → cellular organisms → Bacteria	2954	Open in IMG/M
3300021088\|Ga0210404_10539385	Not Available	661	Open in IMG/M
3300021170\|Ga0210400_10160826	All Organisms → cellular organisms → Bacteria → Acidobacteria	1813	Open in IMG/M
3300021170\|Ga0210400_10419262	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300021170\|Ga0210400_10451281	All Organisms → cellular organisms → Bacteria → Acidobacteria	1061	Open in IMG/M
3300021181\|Ga0210388_10949056	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300021403\|Ga0210397_10345897	Not Available	1101	Open in IMG/M
3300021405\|Ga0210387_10144645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	2029	Open in IMG/M
3300021432\|Ga0210384_11763938	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300021433\|Ga0210391_10261539	Not Available	1358	Open in IMG/M
3300021474\|Ga0210390_11464172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300021475\|Ga0210392_11265806	Not Available	552	Open in IMG/M
3300021479\|Ga0210410_11818710	Not Available	503	Open in IMG/M
3300021559\|Ga0210409_10802223	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300022531\|Ga0242660_1245717	Not Available	508	Open in IMG/M
3300025134\|Ga0207416_1201296	Not Available	624	Open in IMG/M
3300025412\|Ga0208194_1014244	Not Available	1297	Open in IMG/M
3300025414\|Ga0208935_1047482	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300025463\|Ga0208193_1016196	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2125	Open in IMG/M
3300026557\|Ga0179587_10684539	Not Available	675	Open in IMG/M
3300027029\|Ga0208731_1040038	Not Available	515	Open in IMG/M
3300027502\|Ga0209622_1011670	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300027559\|Ga0209222_1079097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	635	Open in IMG/M
3300027625\|Ga0208044_1152902	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300027696\|Ga0208696_1207737	Not Available	618	Open in IMG/M
3300027767\|Ga0209655_10148846	All Organisms → cellular organisms → Bacteria → Acidobacteria	775	Open in IMG/M
3300027855\|Ga0209693_10327282	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300027867\|Ga0209167_10319255	Not Available	841	Open in IMG/M
3300027879\|Ga0209169_10279617	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300027889\|Ga0209380_10002726	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11219	Open in IMG/M
3300028020\|Ga0265351_1008577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	836	Open in IMG/M
3300028795\|Ga0302227_10117930	Not Available	1077	Open in IMG/M
3300028866\|Ga0302278_10029574	Not Available	3769	Open in IMG/M
3300029636\|Ga0222749_10227787	Not Available	941	Open in IMG/M
3300029903\|Ga0247271_112564	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300029951\|Ga0311371_10011607	All Organisms → cellular organisms → Bacteria → Acidobacteria	17166	Open in IMG/M
3300030007\|Ga0311338_10649322	All Organisms → cellular organisms → Bacteria → Acidobacteria	1076	Open in IMG/M
3300030041\|Ga0302274_10311470	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300030053\|Ga0302177_10427198	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	691	Open in IMG/M
3300030056\|Ga0302181_10409164	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300030617\|Ga0311356_10058750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4090	Open in IMG/M
3300030687\|Ga0302309_10139436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1278	Open in IMG/M
3300030738\|Ga0265462_11403449	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300031090\|Ga0265760_10236297	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300031231\|Ga0170824_105080565	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300031233\|Ga0302307_10030234	All Organisms → cellular organisms → Bacteria	2977	Open in IMG/M
3300031236\|Ga0302324_101498128	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300031236\|Ga0302324_103544289	Not Available	505	Open in IMG/M
3300031708\|Ga0310686_101709166	Not Available	2210	Open in IMG/M
3300031708\|Ga0310686_118098140	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300031708\|Ga0310686_119973632	Not Available	726	Open in IMG/M
3300031718\|Ga0307474_10207202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1494	Open in IMG/M
3300031788\|Ga0302319_10719768	Not Available	1007	Open in IMG/M
3300031823\|Ga0307478_10448552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1072	Open in IMG/M
3300031823\|Ga0307478_11782654	Not Available	506	Open in IMG/M
3300032515\|Ga0348332_11331418	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300032515\|Ga0348332_12203331	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300034163\|Ga0370515_0356247	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.73%
Aquatic	Environmental → Aquatic	27.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.09%
Freshwater	Environmental → Aquatic → Freshwater	24.55%
Peat	Environmental → Terrestrial → Peat	11.82%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.55%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.36%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.55%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.73%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.18%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.09%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.09%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.09%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.73%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.73%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001169	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027029	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF045 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028020	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087504

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12661J13543_1025712	3300001169	Forest Soil	AKKHHIPRRILKGPELAILWTLRIYLIFMMAVVVYQVWTAAH*
JGI12635J15846_101741742	3300001593	Forest Soil	HDQLVGAKKHPIPRRHLKGPELLVLWSLRLYLLFMMAVVAYQVWTAAR*
JGIcombinedJ26739_1011262562	3300002245	Forest Soil	TLVLASLEHDQLVGAKKHLIPRRHLKGPELLVLWSLRIYLLFMMAVVAYQVWTAAH*
Ga0062385_105123672	3300004080	Bog Forest Soil	HDQLANAIKNPIPRRHLKGPELLVIWALRVYLLFMMAVVAYQVWIATR*
Ga0062387_1001964092	3300004091	Bog Forest Soil	MVLSSLEHDQLARAKKHFIPRRHLKGPELAVLWALRIYLLFMMAVVGYQVWTAVR*
Ga0062389_1019063662	3300004092	Bog Forest Soil	KKHFIPRRRLKGPELLVLWALRLYLLFMMVVVAYQVWIARAYR*
Ga0062386_1000251192	3300004152	Bog Forest Soil	LVLSSLEHDQLVRAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWLAAH*
Ga0062386_1001134011	3300004152	Bog Forest Soil	AKKHPIPRRHLKGPELVILWALRLYLLFMMAVVAYQVWIARAYR*
Ga0070733_100176131	3300005541	Surface Soil	STLEHDQLVRAKKHFIPRRHLKGPELLVLWALRSYLLFMMAVVAYQVWIAAR*
Ga0070733_100350161	3300005541	Surface Soil	KKHPIPRRHLKGPELVVLWSLRLYLLFMMTVVAYQVWLAAR*
Ga0070761_100605831	3300005591	Soil	AKKHHIPRRILKGPELAVLWALRIYLLFMMAVVVYQVWTAAH*
Ga0070762_106283251	3300005602	Soil	LEHDQLVTAKKHPIPRRHLKGPELLILWSLRLYLLFMMAVVAYQVWLAAR*
Ga0070763_100145073	3300005610	Soil	MVLSSLEHDQLVRAKKHFIPRRILKGPELVVLWGLRIYLLFMMAVVVYQVWTAAH*
Ga0070764_104064652	3300005712	Soil	KHPIPRRHLKGPELAVLWALRIYLLFMMAVVAYQVWIAAR*
Ga0070764_105953942	3300005712	Soil	QLANAKKHPIPRRHLKGPELAVLWALRLYLIFMMAVVVYQVWIAAR*
Ga0070766_110868421	3300005921	Soil	LSSLEHDQLVRAKKHHIPRRRLKGPELAVLWALRIYLLFMMAVVFYQVVTAAR*
Ga0075024_1006312343	3300006047	Watersheds	PRRHLKGRELAVLWALRIYLLFMMAVVAYQIWMAAR*
Ga0070765_1003853051	3300006176	Soil	RLKGLELLILWVLRIYLLFMMAVVAYQVWIARAYR*
Ga0073928_106150741	3300006893	Iron-Sulfur Acid Spring	IPRRHLKGPELLILWSLRLYLLFMMAVVIYQVWIAAR*
Ga0116105_10517061	3300009624	Peatland	HHIPRRRLKGFELLILWALRLYLIFMMVVVAYQVWIARVH*
Ga0116125_11578371	3300009628	Peatland	HPIPRRHLKGPELAVLWALRLYLLFMMAVVAYQVWIAAH*
Ga0116121_10317724	3300009644	Peatland	LEHDQLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAH*
Ga0116121_11477591	3300009644	Peatland	DQLVKAKKHLIARRHLKGPELAILWSLRLYLLFMMAVVAYQVWTAAR*
Ga0116216_108814572	3300009698	Peatlands Soil	VGAKKHHIPRRHLKGPELAVLWSLRLYLLFMMSVVAYQVWTAAH*
Ga0116223_107098002	3300009839	Peatlands Soil	EHDQLVRAKKHLIPRRHLKGPELLVLWALRLYLLFMMAVVGYQVWMTAR*
Ga0136449_1017910281	3300010379	Peatlands Soil	DQLVRAKKHFIPRRHLKGPELAVLWGLRIYLLFMMAVVFYQVWTAAR*
Ga0136449_1034737971	3300010379	Peatlands Soil	SSLEHDQLVRAKKHFIPRRRLKGPELLILWALRLYLLFMMAVVAYQVWIARAYR*
Ga0150983_125491411	3300011120	Forest Soil	GLSSLEHDQLVRAKKHFIPRRHLKGPELAVLWGLRIYLLFMMGVVIYQVWTAAR*
Ga0182024_101628521	3300014501	Permafrost	RHLKAPELAVLWTLRLYLLFMIAVVAYQVWIAAR*
Ga0181519_107328122	3300014658	Bog	VMASLEPDQLVSAKKRHIPRRLLKGPELIVLWSLRLYLLFMMAVVAYQVWTASR*
Ga0187818_101542002	3300017823	Freshwater Sediment	SSLEHDQLARAKKHFIPRRHLKGPELVVLWALRIYLLFMMAVVFYQVWTTAH
Ga0187801_103768541	3300017933	Freshwater Sediment	AKKHFIPRRHLKGPELLVLWSLRLYLLFMMAVVGYQVWVAVR
Ga0187848_101122741	3300017935	Peatland	KHPIPRRHLKGPELIVLWSLRIYLLFMMAVVTYQVWTAAR
Ga0187819_108607561	3300017943	Freshwater Sediment	DQLARAKKHFIPRRHLKGPELLVLWSLRLYLLFMMAVVGYQVWVAVR
Ga0187879_103375841	3300017946	Peatland	QLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAH
Ga0187847_100354471	3300017948	Peatland	LEHDQLVRAKKHHIPRRILKGPELAVLWALRIYLLFMMAVVVYQVLTAAH
Ga0187847_103814491	3300017948	Peatland	QSWVLNSLEHDQLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVTYQVWLAAR
Ga0187780_104716931	3300017973	Tropical Peatland	KHFIPRRHLRGFELLVLWALRLYLLFMMAVVGYQIVVAAR
Ga0187782_100337251	3300017975	Tropical Peatland	LEPDQLAEAKKQRVPRRRLKGPELMVIWFLRIYLLFMIAVVIYQVWTAAQ
Ga0187883_100483051	3300018037	Peatland	LEHDQLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVTYQVWLAAR
Ga0187862_101130941	3300018040	Peatland	SLEHDQLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAH
Ga0187862_105616661	3300018040	Peatland	NSLEHDQLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVTYQVWLAAR
Ga0187890_100508381	3300018044	Peatland	AKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAH
Ga0187859_100648651	3300018047	Peatland	ANAKKHPIPRRHLKGPELLILWSLRLYLLFMMTVVAYQVWTAAR
Ga0187859_102069702	3300018047	Peatland	HIPRRILKGPELAVLWGLRIYLLFMMAVVVYQVLTVAR
Ga0187771_114001823	3300018088	Tropical Peatland	LEHDQLARAKKHPIPRRHLKGPELVVLWALRLYLLFMMAVVGYQVWVVAR
Ga0187770_117211922	3300018090	Tropical Peatland	SLEHDQLARAKKHFIPRRHLKGPELLVLWALRLYLLFMMAVVGYQVWAAVR
Ga0182025_11777551	3300019786	Permafrost	AKKHLIPRRRLKGGELAILWGLRIYLLFMVAVVIYQIWTAR
Ga0193751_12740022	3300019888	Soil	RRALKRTEIVVFTALRVYLLFMMAVVLYQVWSAVH
Ga0210403_114529401	3300020580	Soil	WILSSLEHDQLVGAKKHHIPRRYFNGPELVVLWSLRIYLLFMMAVVIYQVWIAAH
Ga0210399_106139421	3300020581	Soil	LVKAKKHLIPRRHFKTPELLILWTLRLYLIFMMAVVAYQVWLAAR
Ga0210395_108985311	3300020582	Soil	HDQLVGAKKHFIPRRILKGPELVVLWGLRIYLLFMMAVVVYQVWTAAR
Ga0210401_100862315	3300020583	Soil	KHPIPRRHLKGPELLVLWALRIYLLFMMAVVVYQVWTAAH
Ga0210404_105393851	3300021088	Soil	DMVLSSLEHDQLVRAKKHFIPRRILKGPELVVLWGLRIYLLFMMAVVVYQVWTAAH
Ga0210400_101608262	3300021170	Soil	KKRHIPRRHFNGPELAVLWTLRLYLLFMMAVVAYQVWTAR
Ga0210400_104192622	3300021170	Soil	EPDQLVKAKKHLIPRRHFKTPELLILWTLRLYLIFMMAVVAYQVWLAAR
Ga0210400_104512812	3300021170	Soil	DQLVRAKKHPIPRRYLKGPELVVLWALRIYLLFMMAVVIYQVWIAAQ
Ga0210388_109490562	3300021181	Soil	RAKKHHIPRRILKGPELAVLWALRIYLLFMMAVVVYQVWTAAH
Ga0210397_103458971	3300021403	Soil	IPRRHLKGPELLVLWALRIYLLFMMAVVVYQVWIAAH
Ga0210387_101446451	3300021405	Soil	KKHPIPRRHLKGPELAILWSLRLYLIFMMTVVAYQVWMAAH
Ga0210384_117639382	3300021432	Soil	LVKAKKHPIPRRHLKGPELAILWSLRLYLIFMMTVVAYQVWMAAH
Ga0210391_102615392	3300021433	Soil	HLIPRRHLKGPELAVLWGLRIYLVFMMAVVVYQVWTAAR
Ga0210390_114641722	3300021474	Soil	VLSSLEHDQLVRAKKHHIPRRRLKGAELVVLWGLRIYLFFMMAVVFYQIWTAAR
Ga0210392_112658062	3300021475	Soil	PIPRRHLKGFELLILWSLRVYLLFMIAVVTYQVWTAAH
Ga0210410_118187102	3300021479	Soil	NAKKHPIPRRHLKGPELVVLWSLRLYLLFMMAVVGYQVWIAAR
Ga0210409_108022232	3300021559	Soil	LSTLEHDQLVKAKKHPIPRRHLKGPELAILWSLRLYLIFMMTVVAYQVWMAAH
Ga0242660_12457171	3300022531	Soil	SLEHDQLANAKKQPIARRNLKGPELFVLWALRVYVLFMMTVVGYQVWIAAH
Ga0207416_12012962	3300025134	Iron-Sulfur Acid Spring	LAEAKRQHVPRRALKGPAVVVLAALRIYLLFMMAVVVYQIWTGVH
Ga0208194_10142441	3300025412	Peatland	EHDQLARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVTYQVWLAAR
Ga0208935_10474821	3300025414	Peatland	HHIPRRRLKGFELLILWALRLYLIFMMVVVAYQVWIARVH
Ga0208193_10161964	3300025463	Peatland	HDQLVKAKQYPIPRRKLKGPELTILWTLRLYLIFMVFVVACQVWLAAR
Ga0179587_106845391	3300026557	Vadose Zone Soil	KHPIPRRHLKGPELLILWTLRLYLLFMMTVVGYQVWIAAR
Ga0208731_10400381	3300027029	Forest Soil	QDLVLSSLEHDQLVGVKKHFIPRRILKGPELVVLWGLRIYLLFMMAVVAYQVWVAAH
Ga0209622_10116702	3300027502	Forest Soil	RRSLKGRELMVLWFLRIYLIFMVVVVVYQAWTSAH
Ga0209222_10790972	3300027559	Forest Soil	RRHLKGPELAILWALRLYLLFMMAVVAYQVWLAAR
Ga0208044_11529021	3300027625	Peatlands Soil	SLEHDQLARAKRHFIPRRHLKGPELLVLWSLRIYLLFMMAVVGYQVWVAVR
Ga0208696_12077371	3300027696	Peatlands Soil	VLSSLEHDQLVGAKKHFIPRRILKGPELAVLWGLRIYLLFMMAVVVYQVWTAAR
Ga0209655_101488462	3300027767	Bog Forest Soil	KHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWVAAR
Ga0209693_103272822	3300027855	Soil	IPRRRLKGLELLILWALRIYLLFMMAVVAYQVWIARAYR
Ga0209167_103192552	3300027867	Surface Soil	KHFIPRRHLKGPELLVLWALRSYLLFMMAVVAYQVWIAAR
Ga0209169_102796172	3300027879	Soil	ANAKKHPIPRRHLKGPELAVLWALRIYLLFMMAVVAYQVWIAAR
Ga0209380_100027264	3300027889	Soil	MVLSSLEHDQLVRAKKHFIPRRILKGPELVVLWGLRIYLLFMMAVVVYQVWTAAH
Ga0265351_10085772	3300028020	Soil	IPRRHLKGPELLVLWSLRIYLLFMMAVVAYQVWTAAH
Ga0302227_101179301	3300028795	Palsa	ANAKKHPIPRRNLKGPELAVLWSLRLYLLFMMAVVAYQVWIAAR
Ga0302278_100295744	3300028866	Bog	HIPRRKLKGPELAMLWTLRLYLIFMMAVVAYQAWTAAH
Ga0222749_102277871	3300029636	Soil	LANAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVGYQVWIAAH
Ga0247271_1125642	3300029903	Soil	LIARRHLKGPELAILWSLRLYLLFMMAVVAYQVWTAAR
Ga0311371_100116071	3300029951	Palsa	KKHPIPRRRLKGFELLILWALRLYLIFMIVVVAYQVWIART
Ga0311338_106493222	3300030007	Palsa	RRLKGPELLVLWALRLYLLFMMVVVAYQVWMARAYR
Ga0302274_103114702	3300030041	Bog	KKHHIPRRRLKGFELLILWALRLYLIFMMVVVAYQVWIARVH
Ga0302177_104271983	3300030053	Palsa	LEHDQLVGAKKHLIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVCLAAR
Ga0302181_104091642	3300030056	Palsa	DQLARAKKHPIPRRRLKGFELLILWALRLYLIFMIVVVAYQVWIART
Ga0311356_100587501	3300030617	Palsa	SLVLSSLEHDQLVKAKKHLIPRRHLKGPELLILWSLRLYLLFMMAVVAYQVWLAAR
Ga0302309_101394361	3300030687	Palsa	SLALSTLEPDQLVAAKKHHIPRRHFNGPELAVIWALRLYLLFMMAVVIYQVWTAGR
Ga0265462_114034492	3300030738	Soil	LLLFQLVGAKKHHIPRRHLKGPELLVLWTLRLYLLFMMAVVGYQVWIAAR
Ga0265760_102362972	3300031090	Soil	LALRKHPIARRKLTTAEVAVLWSLRVYLIFMVAVVVYQAWTAAH
Ga0170824_1050805652	3300031231	Forest Soil	LVKAKKPLIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAR
Ga0302307_100302343	3300031233	Palsa	ESLVLSSLEHDQLVKAKKHLIPRRHLKGPELLILWSLRLYLLFMMAVVAYQVWLAAR
Ga0302324_1014981281	3300031236	Palsa	RRNLKGPELAVLWSLRLYLLFMMAVVAYQVWIAAR
Ga0302324_1035442892	3300031236	Palsa	TLVLNSLEPDQLVSAKKHHIPRRKLKGPELAMLWTLRLYLIFMMAVVAYQAWTAAH
Ga0310686_1017091661	3300031708	Soil	LVLSSLEHDQLVGVKKQHIPRRHFNGPELVVLWALRLYLLFMMAVVAYQVWTAAH
Ga0310686_1180981401	3300031708	Soil	QTWVLSSLEHDQLVKAKKHLIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWIAAR
Ga0310686_1199736322	3300031708	Soil	IPRRHLKGPELLVLWALRLYLIFMMAVVGYQVWIAAR
Ga0307474_102072021	3300031718	Hardwood Forest Soil	SSLEHDQLVRAKKHFIPRRRLKGPELAVLWGLRIYLLFMMAVVFYQVWTAAR
Ga0302319_107197682	3300031788	Bog	ARAKKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWLAAR
Ga0307478_104485523	3300031823	Hardwood Forest Soil	IPRRHLKGRELLVLWTLRLYLIFMMVVVAYQVWLAAR
Ga0307478_117826542	3300031823	Hardwood Forest Soil	KHLIPRRHLKGPELLVLWALRLYLIFMMAVVAYQVSIAAR
Ga0348332_113314181	3300032515	Plant Litter	RRHLKGPELLVLWALRLYLLFMMAVVAYQVWLAAR
Ga0348332_122033311	3300032515	Plant Litter	IPRRHLKGPELLVLWALRLYLLFMMAVVGYQVWTAAQ
Ga0370515_0356247_461_616	3300034163	Untreated Peat Soil	SLEHDQLVKARKHPIPRRHLKGPELLVLWALRLYLLFMMAVVAYQVWSAAH

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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