Metagenome / Metatranscriptome Family F087490

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087490
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	43 residues
Representative Sequence	VTDTDLLSQKAAGSEPWVLAGQELSSRLILGTGGVQSLEVLR
Number of Associated Samples	99
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.18 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.64 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.455 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.000 % of family members)
Environment Ontology (ENVO)	Unclassified (25.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.86% β-sheet: 24.29% Coil/Unstructured: 62.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02597	ThiS	59.09
PF01266	DAO	36.36
PF02581	TMP-TENI	3.64
PF00795	CN_hydrolase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	59.09
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	59.09
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	3.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.45 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.45 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.45 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	88.18 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	88.18 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	43.64 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	17.27 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.36 %
Unclassified	root	N/A	4.55 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	17.27 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.36 %
Unclassified	root	N/A	4.55 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	10.00 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.36 %
Unclassified	root	N/A	4.55 %
Saccharomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	10.00 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.36 %
Unclassified	root	N/A	4.55 %
unclassified Saccharomonospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → unclassified Saccharomonospora	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	10.00 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.36 %
Unclassified	root	N/A	4.55 %
Saccharomonospora sp. CUA-673	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → unclassified Saccharomonospora → Saccharomonospora sp. CUA-673	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10198470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	792	Open in IMG/M
3300002245\|JGIcombinedJ26739_100287074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1530	Open in IMG/M
3300003505\|JGIcombinedJ51221_10271515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	690	Open in IMG/M
3300004080\|Ga0062385_10563417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	714	Open in IMG/M
3300004082\|Ga0062384_100848813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	642	Open in IMG/M
3300004091\|Ga0062387_100974616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	648	Open in IMG/M
3300004092\|Ga0062389_101223074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	937	Open in IMG/M
3300004092\|Ga0062389_102766144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	655	Open in IMG/M
3300004635\|Ga0062388_100277952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1382	Open in IMG/M
3300005435\|Ga0070714_101945753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300005471\|Ga0070698_102203306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300005534\|Ga0070735_10350820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300005537\|Ga0070730_10754098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	615	Open in IMG/M
3300005538\|Ga0070731_10563342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	759	Open in IMG/M
3300005542\|Ga0070732_10348610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	891	Open in IMG/M
3300005921\|Ga0070766_10658428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	707	Open in IMG/M
3300006176\|Ga0070765_101018728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	783	Open in IMG/M
3300006176\|Ga0070765_101051317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	769	Open in IMG/M
3300009700\|Ga0116217_10858448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300010343\|Ga0074044_11060913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300010360\|Ga0126372_10065179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2558	Open in IMG/M
3300010379\|Ga0136449_101147299	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300010880\|Ga0126350_10838979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	760	Open in IMG/M
3300011090\|Ga0138579_1087958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1548	Open in IMG/M
3300012210\|Ga0137378_11303470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	642	Open in IMG/M
3300012944\|Ga0137410_11203954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300014169\|Ga0181531_10630009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	665	Open in IMG/M
3300016270\|Ga0182036_10580715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300016294\|Ga0182041_11938305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300016341\|Ga0182035_11641383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	580	Open in IMG/M
3300017822\|Ga0187802_10370561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300017928\|Ga0187806_1036109	Not Available	1475	Open in IMG/M
3300017928\|Ga0187806_1235918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	629	Open in IMG/M
3300017932\|Ga0187814_10192629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	765	Open in IMG/M
3300017932\|Ga0187814_10456141	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300017937\|Ga0187809_10311603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300017942\|Ga0187808_10323245	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300017942\|Ga0187808_10623494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	500	Open in IMG/M
3300017943\|Ga0187819_10620743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300017955\|Ga0187817_10587811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	710	Open in IMG/M
3300017975\|Ga0187782_11560752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300018007\|Ga0187805_10103697	Not Available	1287	Open in IMG/M
3300018034\|Ga0187863_10624721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	607	Open in IMG/M
3300018058\|Ga0187766_10321407	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300018058\|Ga0187766_10692368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300018060\|Ga0187765_10965630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300018085\|Ga0187772_10873876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300018086\|Ga0187769_10448416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	972	Open in IMG/M
3300018088\|Ga0187771_10379708	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300020582\|Ga0210395_10658821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300020583\|Ga0210401_11116941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300021180\|Ga0210396_11086756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300021401\|Ga0210393_10359005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1186	Open in IMG/M
3300021403\|Ga0210397_10826915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300021405\|Ga0210387_11478491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300021433\|Ga0210391_11293745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300021559\|Ga0210409_10812768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	808	Open in IMG/M
3300021559\|Ga0210409_11033834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	696	Open in IMG/M
3300022734\|Ga0224571_110337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	646	Open in IMG/M
3300025634\|Ga0208589_1064146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	905	Open in IMG/M
3300025928\|Ga0207700_10105881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2253	Open in IMG/M
3300027064\|Ga0208724_1008346	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300027080\|Ga0208237_1035547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	750	Open in IMG/M
3300027570\|Ga0208043_1036007	Not Available	1502	Open in IMG/M
3300027854\|Ga0209517_10336200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300027857\|Ga0209166_10063564	Not Available	2114	Open in IMG/M
3300027879\|Ga0209169_10033087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → unclassified Saccharomonospora → Saccharomonospora sp. CUA-673	2738	Open in IMG/M
3300028775\|Ga0302231_10404067	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300028806\|Ga0302221_10113255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1201	Open in IMG/M
3300028877\|Ga0302235_10242737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	786	Open in IMG/M
3300029882\|Ga0311368_10733446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	679	Open in IMG/M
3300029951\|Ga0311371_10692253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1283	Open in IMG/M
3300029999\|Ga0311339_10099867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3587	Open in IMG/M
3300030707\|Ga0310038_10076227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1809	Open in IMG/M
3300031027\|Ga0302308_10101317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1965	Open in IMG/M
3300031446\|Ga0170820_13630017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300031544\|Ga0318534_10140508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1392	Open in IMG/M
3300031544\|Ga0318534_10835874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300031546\|Ga0318538_10420027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300031549\|Ga0318571_10076261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1055	Open in IMG/M
3300031564\|Ga0318573_10727872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300031640\|Ga0318555_10008126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4483	Open in IMG/M
3300031668\|Ga0318542_10035088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2190	Open in IMG/M
3300031715\|Ga0307476_11223501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300031723\|Ga0318493_10266394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	918	Open in IMG/M
3300031753\|Ga0307477_10907195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300031765\|Ga0318554_10656094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300031770\|Ga0318521_10452845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300031777\|Ga0318543_10501665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300031792\|Ga0318529_10596706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300031821\|Ga0318567_10620953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	614	Open in IMG/M
3300031846\|Ga0318512_10549023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	587	Open in IMG/M
3300031846\|Ga0318512_10606693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300031947\|Ga0310909_11254581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300032009\|Ga0318563_10210379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1049	Open in IMG/M
3300032055\|Ga0318575_10544127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	589	Open in IMG/M
3300032064\|Ga0318510_10432025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300032065\|Ga0318513_10619271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300032067\|Ga0318524_10645866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300032068\|Ga0318553_10186592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1080	Open in IMG/M
3300032180\|Ga0307471_101378386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	866	Open in IMG/M
3300032261\|Ga0306920_102337287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300032770\|Ga0335085_11575064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	681	Open in IMG/M
3300032782\|Ga0335082_10305669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1462	Open in IMG/M
3300032783\|Ga0335079_11940443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	569	Open in IMG/M
3300032955\|Ga0335076_10763722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	848	Open in IMG/M
3300033290\|Ga0318519_10530270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	711	Open in IMG/M
3300033290\|Ga0318519_11007678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300034199\|Ga0370514_060321	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300034199\|Ga0370514_215069	Not Available	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.82%
Aquatic	Environmental → Aquatic	17.27%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.45%
Freshwater	Environmental → Aquatic → Freshwater	17.27%
Peat	Environmental → Terrestrial → Peat	6.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	10.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.00%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	10.00%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.36%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.36%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011090	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022734	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3	Host-Associated	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101984701	3300001356	Peatlands Soil	VTDADLLSQKMAGAEPWVLAGHELSSRLILGTGGVQSLE
JGIcombinedJ26739_1002870743	3300002245	Forest Soil	MTGTDVLSQAAPWTPADPWTLAGRELASRLILGTGGVQSLD
JGIcombinedJ51221_102715151	3300003505	Forest Soil	VTDTDLLSQKAAGSEPWVLAGQELSSRLILGTGGVQSLEVLRRV
Ga0062385_105634173	3300004080	Bog Forest Soil	MTDTDVLSQAAPAGSWTLAGRELASRLILGTGGVQSLDVLRRVLD
Ga0062384_1008488131	3300004082	Bog Forest Soil	LGDADLLSHKIAGAEPWVLAGCELSSRLILGTGGVQSLEVLRR
Ga0062387_1009746161	3300004091	Bog Forest Soil	MTDTEVLSQAASPVPEEPWTLAGRELSSRLILGTGGVQSLE
Ga0062389_1012230743	3300004092	Bog Forest Soil	LGDADLLSHKIAGAEPWVLAGCELSSRLILGTGGVQSLEVL
Ga0062389_1027661441	3300004092	Bog Forest Soil	MTDTEVLSQAASPVPEEPWTLAGRELSSRLILGTGGVQSLEVL
Ga0062388_1002779521	3300004635	Bog Forest Soil	VTDADLLSQTAAGLEPWVLAGHELSSRLILGTGGVQSLEVLRRVL
Ga0070714_1019457531	3300005435	Agricultural Soil	MIMSDTDVLSRAQAGTERWELAGQELSSRLILGTGGVQSL
Ga0070698_1022033061	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSDAEVLSRPQALAEAEPWTLAGQELSSRLILGTGGVQSLEVL
Ga0070735_103508203	3300005534	Surface Soil	MTDTDVLSQAALWTPADPWTLAGRELASRLILGTGGVQSLDVL
Ga0070730_107540981	3300005537	Surface Soil	VSDTDVLRPALGAERWVLAGQELSSRLILGTGGVQSL
Ga0070731_105633421	3300005538	Surface Soil	MTDTDVLTQAAISQPWRLADRELSSRLIVGTGGVQSLEVLR
Ga0070732_103486103	3300005542	Surface Soil	VSDTDVLRPALGAERWVLAGQELSSRLILGTGGVQSLEVLRRVI
Ga0070766_106584283	3300005921	Soil	MTDIDVLSQAAPPAPADSWTLAGRELASRLILGTGGVQSLDVL
Ga0070765_1010187283	3300006176	Soil	VTDADLLSQQTAGAEPWVLAGQELSSRLILGTGGVQSLEVLRRV
Ga0070765_1010513173	3300006176	Soil	MTDTDVLSQAAPWTPADPWTLAGRELASRLILGTGGVQSLDVLRR
Ga0116217_108584481	3300009700	Peatlands Soil	MTDTDLLSQETAGAEPWVLAGHELSSRLILGTGGVQSLEVLRRV
Ga0074044_110609133	3300010343	Bog Forest Soil	MTDTHVLSQAASWTPAESWTLAGRELASRLILGTGGVQSL
Ga0126372_100651795	3300010360	Tropical Forest Soil	MTMTDADVLSRPTVSEPWAPWVLAGQELGSRLILGTGGVQ
Ga0136449_1011472991	3300010379	Peatlands Soil	MTMTDTDVLTQAAISETWMLADRELSSRLIVGTGGVQSLEVL
Ga0126350_108389791	3300010880	Boreal Forest Soil	LTDAELLSRPVTGPDGMEPWVLAGQELSSRLILGTGGVPSL
Ga0138579_10879581	3300011090	Peatlands Soil	LTDTDLLSSQTAGAEPWVLAGHELSSRLILGTGGVQSLEVLR
Ga0137378_113034703	3300012210	Vadose Zone Soil	VTDTDVVTQATAGAEPWVLAGHELSSRLILGTGGVQS
Ga0137410_112039543	3300012944	Vadose Zone Soil	MIMSDTDVLSQVQAGTERWELAGQELGSRLILGTGGVQSLE
Ga0181531_106300091	3300014169	Bog	VSDADLLNDKAAGSEPWVLAGQELSSRLILGTGGVQSLEVL
Ga0182036_105807151	3300016270	Soil	MTDTEVLRQAAPPSPAEPWVLAGRELASRLILGTGGVQS
Ga0182041_119383051	3300016294	Soil	MSDADVLSPPQAPASTEAWVLAGQELSSRLILGTGGVQSLE
Ga0182035_116413833	3300016341	Soil	VTDADLLNPAAADPWAPREPWVLAGRELSSRLILGT
Ga0187802_103705611	3300017822	Freshwater Sediment	LTDTDLLNPQTAGAEPWVLAGQELNSRLILGTGGVQSLE
Ga0187806_10361091	3300017928	Freshwater Sediment	MTDTDVLSQAARWTPAEPWMLAGRELASRLILGTGGVQSLDVL
Ga0187806_12359181	3300017928	Freshwater Sediment	LTDTDLLSQTAADPWAPQDPWVLAGRELSSRLILGTGGVQSLEVLRR
Ga0187814_101926291	3300017932	Freshwater Sediment	LTDTDLLSQTAADPWAPQDPWVLAGRELSSRLILGT
Ga0187814_104561411	3300017932	Freshwater Sediment	LTDTDVLGQAAPRIEAEPWVLAGRELASRLILGTGGVQS
Ga0187809_103116031	3300017937	Freshwater Sediment	MSDADVLSRPQAEPWVLAGQELSSRLILGTGGVQSLEVLRRVLDA
Ga0187808_103232453	3300017942	Freshwater Sediment	VTDAELLRPAAAGPRAAQDPWVLAGRELSSRLILGTGG
Ga0187808_106234941	3300017942	Freshwater Sediment	LTDTDVLGQAAPRIEAEPWVLAGRELASRLILGTGGVQSLD
Ga0187819_106207433	3300017943	Freshwater Sediment	MTDTEVLSRTAPWTPADPWMLGGRELASRLILGTGG
Ga0187817_105878113	3300017955	Freshwater Sediment	LTDTDLLSQTAADPWAPQDPWVLAGRELSSRLILGTGGVQSLEVLRRVL
Ga0187782_115607523	3300017975	Tropical Peatland	MSDTKLLSQTTAGLTETEPWVLAGRELSSRLILGT
Ga0187805_101036971	3300018007	Freshwater Sediment	MTDTDVLSQAARWTPAEPWMLAGRELASRLILGTGGVQS
Ga0187863_106247211	3300018034	Peatland	VSDTDLLSRKEAGSEPWTLAGQELSSRLIFGTGGVQSLEVL
Ga0187766_103214071	3300018058	Tropical Peatland	MAEADLLSQKTAGTQPEALAGAEPWVLAGQELSSRLILGTGGVQSLEVLRRV
Ga0187766_106923681	3300018058	Tropical Peatland	VTDADLLRQAVAAPQDPWVLAGRELSSRLILGTGGVQSLEVLQRVLVAS
Ga0187765_109656303	3300018060	Tropical Peatland	VSDTDLLSQPAAGPAPSAPPEAEPWVLAGHELSSRLILGTGGVQSLEVLRRV
Ga0187772_108738763	3300018085	Tropical Peatland	LTDTDVLSRAAPWTPADPWMLAGRELASRLILGTGGVQSLDVLRRVL
Ga0187769_104484165	3300018086	Tropical Peatland	VAEADLLSQKTAGTWPQALAGTEPWAVAGQELSSRLILGTGGVQSLEVLRRVIGA
Ga0187771_103797083	3300018088	Tropical Peatland	VTDTDLLSPTAADPWAPQDPWVLAGRELSSRLILGTGG
Ga0210395_106588211	3300020582	Soil	LGDADLLSHKTAGAESWVLAGCELSSRLILGTGGVQSLEVL
Ga0210401_111169413	3300020583	Soil	MSDTDVLSRAQAGTERWELAGQELSSRLILGTGGVQSLDVLRRVLDAS
Ga0210396_110867563	3300021180	Soil	VTDTDLLSQKAAGSEPWVLAGQELSSRLILGTGGVQSLEVLR
Ga0210393_103590053	3300021401	Soil	VTDTDLLSQKAAGSEPWVLAGHELSSRLILGTGGVQSLEVLRRVVDASAT
Ga0210397_108269153	3300021403	Soil	LGDADLLSHKTAGAESWVLAGCELSSRLILGTGGVKSLE
Ga0210387_114784913	3300021405	Soil	MSDTDVLSRAQAGTERWELAGQELSSRLILGTGGV
Ga0210391_112937451	3300021433	Soil	VSDTELLSRQEAGSEPWTLAGQELSSRLILGTGGV
Ga0210409_108127683	3300021559	Soil	MTDTDVLNQAAPWTPADPWTLAGRELASRLILGTGGVQSLDVLRRG
Ga0210409_110338343	3300021559	Soil	LTDTDLLSQQTAGAEPWVLAGQELSSRLILGTGGVQSL
Ga0224571_1103371	3300022734	Rhizosphere	VTDTDLLSKKAAGSEPWVLAGHELSSRLILGTGGVQSLEVLRRVVD
Ga0208589_10641461	3300025634	Arctic Peat Soil	MTDTDVLSQAAPWTPADSWTLAGRELASRLILGTGGVQSLDVLRRVLEASGT
Ga0207700_101058811	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTDAELLSRPVTGPDGMEPWVLAGQELSSRLILGTGGAPSLD
Ga0208724_10083461	3300027064	Forest Soil	MTDTDVLSQAAPPAPADSWTLAGRELASRLILGTGGVQSL
Ga0208237_10355471	3300027080	Forest Soil	MTDTDVLSQAALWTPADPWTLAGRELASRLILGTGGVQSLDVLRRV
Ga0208043_10360073	3300027570	Peatlands Soil	LTDTDVLSQAAAAAPAEPWMLAGRELASRLILGTGGVPSLQVLRR
Ga0209517_103362003	3300027854	Peatlands Soil	VTDADLLSQKMAGAEPWVLAGHELSSRLILGTGGVQSLEVLRRV
Ga0209166_100635643	3300027857	Surface Soil	MTDVDLASPTLAGLNTVAEPWILADRELSSRLILGTGGVQSLEVLRCALDASGAALV
Ga0209169_100330871	3300027879	Soil	MTDTDVLSQAAPWTPADPWTLAGRELASRLILGTGGVQSLDVLRRVLDAS
Ga0302231_104040671	3300028775	Palsa	LSDTDLLSRKEAGSEPWTLAGQELSSRLILGTGGVPSLEVLR
Ga0302221_101132553	3300028806	Palsa	MTDTDVLSQAAKWTPADPWVLAGRELASRLILGTGGVQSLDVLRR
Ga0302235_102427373	3300028877	Palsa	VSDTELLSRQEAGFEPWTLAGQELSSRLILGTGGVPSLEVL
Ga0311368_107334463	3300029882	Palsa	VSDTELLSREKAGSEPWTLAGQELSSRLILGTGGVQSLEVL
Ga0311371_106922533	3300029951	Palsa	LSETDLLSRKEAGAEPWSLAGQELSSRLIFGTGGVQSLEVL
Ga0311339_100998675	3300029999	Palsa	VSEEDLLNRKEAGSEPWTLAGQELSSRLILGTGGVQSLEVL
Ga0310038_100762274	3300030707	Peatlands Soil	VTDADLLSQKMAGAEPWVLAGHELSSRLILGTGGVQSLEVLRRVLDASAT
Ga0302308_101013174	3300031027	Palsa	VSEEDLLNRKEAGSEPWTLAGQELSSRLILGTGGVQSLE
Ga0170820_136300171	3300031446	Forest Soil	MSDTDVLSRVQAGTERWELAGQELSSRLILGTGGVQSLDV
Ga0318534_101405081	3300031544	Soil	MSAAEVLNQAGADLEPWVLAGRELSSRLILGTGGVQSLDVL
Ga0318534_108358743	3300031544	Soil	MTHTGVLSQAAPWTPAEPWNLAGRELASRLILGTGGVQSLEVLRRVLE
Ga0318538_104200273	3300031546	Soil	MSAAEVLNQAGADLEPWVLAGRELSSRLILGTGGVQSLDVLRRVLE
Ga0318571_100762611	3300031549	Soil	LNDTDVLTQAAPWTPAEPWTLAGRELASRLILGTGGVQSLDVL
Ga0318573_107278723	3300031564	Soil	MSDTDLLSQQLAGPASAAPAAAEPWVLAGHELSSRLILGTGGVQS
Ga0318555_100081265	3300031640	Soil	VTDADLLNPAAADPWAPREPWVLAGRELSSRLILGTGGVQSLEVLR
Ga0318542_100350884	3300031668	Soil	MTDTEVLRQAAPPSPAEPWVLAGRELASRLILGTGGVQSLEVLRRVLDASG
Ga0307476_112235013	3300031715	Hardwood Forest Soil	MSAAEVLNPATAGLEPWVLAGRELSSRLILGTGGVQSLEVLRRALDAS
Ga0318493_102663941	3300031723	Soil	MTDTEVLSRTAPRTPAEPWMLAGRELASRLILGTGGVQS
Ga0307477_109071953	3300031753	Hardwood Forest Soil	MTDADVLSQAAPPTRADSWILAGRELASRLILGTG
Ga0318554_106560941	3300031765	Soil	MTHTGVLSQAAPWTPAEPWNLAGRELASRLILGTGGVQSLEVLRRVLEA
Ga0318521_104528451	3300031770	Soil	MTDTEVLRQVAPPAPAQPWMLAGRELASRLILGTGGVQSLD
Ga0318543_105016651	3300031777	Soil	MSAAEVLNQAGADLEPWVMAGRELSSRLILGTGGVQSLD
Ga0318529_105967063	3300031792	Soil	MTDTEVLRQVAPPAPAQPWMLAGRELASRLILGTGGVQ
Ga0318567_106209533	3300031821	Soil	LSDTDLLSQQTAGPAPAAPSNAEPWVLAGHELSSRLILGTGGVQSLEVLRRVLDAS
Ga0318512_105490231	3300031846	Soil	MTDTEVLRQAAPPSPAEPWVLAGRELASRLILGTGGVQSLEVLRR
Ga0318512_106066931	3300031846	Soil	MSDTDLLSQQLAGPASAAPAAAEPWVLAGHELSSRLILGTGGVQSLEVLRRVLDASA
Ga0310909_112545813	3300031947	Soil	LNDTDVLTQAAPWTPAEPWTLAGRELASRLILGTGGVQSLDVLR
Ga0318563_102103793	3300032009	Soil	MSDTDLLSQQLAGPASAAPAAAEPWVLAGHELSSRLILGTGGVQSLEVLR
Ga0318575_105441273	3300032055	Soil	MSDTDLLSQQLAGPASAAPAAAEPWVLAGHELSSRLILGTGGVQSLEVLRRVLD
Ga0318510_104320251	3300032064	Soil	MSDTDLLSQQLAGPASAAPAAAEPWVLAGHELSSRLILGTGGVQSLEVL
Ga0318513_106192711	3300032065	Soil	MTDTEVLRQVAPLAPAEPWMLAGRELASRLILGTGG
Ga0318524_106458663	3300032067	Soil	MSDTDLLSQQLAGPASAAPAAAEPWVLAGHELSSRLILGTGGVQSLE
Ga0318553_101865923	3300032068	Soil	MSDADVLSPPQAPASTEAWVLAGQELSSRLILGTGGVQSLEVL
Ga0307471_1013783861	3300032180	Hardwood Forest Soil	MTDADVLSQAAPPTRADSWILAGRELASRLILGTGGVQSLVVLRRVLDASGTA
Ga0306920_1023372871	3300032261	Soil	MTHTGVLSQAAPWTPAEPWNLAGRELASRLILGTGGVQS
Ga0335085_115750643	3300032770	Soil	LSDAEVLSRPQAGTERWELAGQELSSRLILGTGGVQSLDVLRRVLDA
Ga0335082_103056693	3300032782	Soil	LSDADVLSRPQAGTERWELAGQELSSRLILGTGGVQSLEVLRRVLD
Ga0335079_119404433	3300032783	Soil	VSDADLLNDKAAGSEPWVLAGQELSSRLILGTGGVQSLEV
Ga0335076_107637223	3300032955	Soil	MTDTEILSQAAPSAAADPWVLAGRELASRLILGTGGVPSLEVLR
Ga0318519_105302701	3300033290	Soil	VSDADLLSRTTAGSEPWVLAGRELSSRLILGTGGVQSLEVLRRVLDA
Ga0318519_110076783	3300033290	Soil	MTDIDVLTQAAPRTPAEPWTLAGRELASRLILGTGGVQSLDVLRRVLD
Ga0370514_060321_814_957	3300034199	Untreated Peat Soil	MTDTDVLSQAAKWTPADPWVLAGRELASRLILGTGGVQSLDVLRRVLD
Ga0370514_215069_1_138	3300034199	Untreated Peat Soil	MSDTELLSRQEAGSEPWMLAGQELSSRLILGTGGVQSLEVLRRALT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087490

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences