Metagenome / Metatranscriptome Family F087477

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087477
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	VLVSAELAAAVGANCRLVPLGCHALRGVREMQEIYGLDLG
Number of Associated Samples	88
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	89.09 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.727 % of family members)
Environment Ontology (ENVO)	Unclassified (52.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.29% β-sheet: 22.06% Coil/Unstructured: 67.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01717	Meth_synt_2	16.36
PF08386	Abhydrolase_4	6.36
PF04014	MazE_antitoxin	2.73
PF01541	GIY-YIG	1.82
PF01724	DUF29	1.82
PF00805	Pentapeptide	1.82
PF00782	DSPc	1.82
PF01695	IstB_IS21	0.91
PF00561	Abhydrolase_1	0.91
PF00296	Bac_luciferase	0.91
PF02452	PemK_toxin	0.91
PF13358	DDE_3	0.91
PF01548	DEDD_Tnp_IS110	0.91
PF00881	Nitroreductase	0.91
PF12697	Abhydrolase_6	0.91
PF13365	Trypsin_2	0.91
PF13185	GAF_2	0.91
PF01039	Carboxyl_trans	0.91
PF00672	HAMP	0.91
PF01590	GAF	0.91
PF12848	ABC_tran_Xtn	0.91
PF04655	APH_6_hur	0.91
PF00665	rve	0.91
PF07992	Pyr_redox_2	0.91
PF00892	EamA	0.91
PF00440	TetR_N	0.91
PF04367	DUF502	0.91
PF13459	Fer4_15	0.91
PF00078	RVT_1	0.91
PF00496	SBP_bac_5	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	16.36
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.82
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.91
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.91
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.91
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.91
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.91
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.91
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.91
COG2928	Uncharacterized membrane protein	Function unknown [S]	0.91
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3570	Streptomycin 6-kinase	Defense mechanisms [V]	0.91
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.91
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.64 %
Unclassified	root	N/A	16.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	40.00 %
Unclassified	root	N/A	16.36 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	7.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.64 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	2.73 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.91 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	0.91 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.73 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	0.91 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.91 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	2.73 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.82 %
unclassified Lichenibacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium	0.91 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.91 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Azospirillum thiophilum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	2.73 %
Lichenibacterium sp. 6Y81	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	0.91 %
Bradyrhizobium sp. AS23.2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2	0.91 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	0.91 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.91 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_100821145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	651	Open in IMG/M
3300004633\|Ga0066395_10019016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2699	Open in IMG/M
3300005437\|Ga0070710_11182091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300005458\|Ga0070681_11711877	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300005559\|Ga0066700_10553395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	802	Open in IMG/M
3300005561\|Ga0066699_10911937	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005764\|Ga0066903_102446929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1010	Open in IMG/M
3300005764\|Ga0066903_102585177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300005764\|Ga0066903_107101127	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300006031\|Ga0066651_10048190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1984	Open in IMG/M
3300006176\|Ga0070765_101646446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300006804\|Ga0079221_10591450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300009094\|Ga0111539_10607760	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300009176\|Ga0105242_11429004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	720	Open in IMG/M
3300010046\|Ga0126384_11133615	Not Available	718	Open in IMG/M
3300010321\|Ga0134067_10440683	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300010358\|Ga0126370_10645195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921	Open in IMG/M
3300010361\|Ga0126378_10115290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2680	Open in IMG/M
3300010362\|Ga0126377_11823219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300010362\|Ga0126377_12714018	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300010398\|Ga0126383_10224621	All Organisms → cellular organisms → Bacteria	1822	Open in IMG/M
3300012056\|Ga0153925_1030879	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300012210\|Ga0137378_10739529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	895	Open in IMG/M
3300012211\|Ga0137377_11501239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300012357\|Ga0137384_10465603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1040	Open in IMG/M
3300012361\|Ga0137360_11184370	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300012363\|Ga0137390_10206097	All Organisms → cellular organisms → Bacteria	1954	Open in IMG/M
3300012363\|Ga0137390_10767801	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300013306\|Ga0163162_10515144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1326	Open in IMG/M
3300014271\|Ga0075326_1016116	Not Available	1808	Open in IMG/M
3300016270\|Ga0182036_11036899	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300016294\|Ga0182041_11258009	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300016341\|Ga0182035_10755165	Not Available	851	Open in IMG/M
3300016341\|Ga0182035_11533692	Not Available	600	Open in IMG/M
3300016371\|Ga0182034_10667169	Not Available	882	Open in IMG/M
3300016371\|Ga0182034_10950165	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300016445\|Ga0182038_11877337	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300017936\|Ga0187821_10031439	All Organisms → cellular organisms → Bacteria → Proteobacteria	1875	Open in IMG/M
3300017961\|Ga0187778_10904962	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300020580\|Ga0210403_10886231	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300021088\|Ga0210404_10827041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	529	Open in IMG/M
3300021388\|Ga0213875_10273549	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300021444\|Ga0213878_10035296	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300021444\|Ga0213878_10298639	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300021478\|Ga0210402_10440991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1209	Open in IMG/M
3300021560\|Ga0126371_10670006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1186	Open in IMG/M
3300021560\|Ga0126371_12075023	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300021560\|Ga0126371_12670048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AS23.2	605	Open in IMG/M
3300022529\|Ga0242668_1059337	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300022533\|Ga0242662_10244369	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300025916\|Ga0207663_10503213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	941	Open in IMG/M
3300025923\|Ga0207681_11707062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	526	Open in IMG/M
3300025941\|Ga0207711_11988001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum thiophilum	524	Open in IMG/M
3300027307\|Ga0209327_1000374	Not Available	3710	Open in IMG/M
3300027869\|Ga0209579_10593574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300031057\|Ga0170834_112047076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	681	Open in IMG/M
3300031446\|Ga0170820_16243484	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300031545\|Ga0318541_10248859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300031545\|Ga0318541_10527153	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300031561\|Ga0318528_10321448	Not Available	831	Open in IMG/M
3300031564\|Ga0318573_10046894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2095	Open in IMG/M
3300031573\|Ga0310915_11075413	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031680\|Ga0318574_10056542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2079	Open in IMG/M
3300031680\|Ga0318574_10428244	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300031681\|Ga0318572_10866815	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031682\|Ga0318560_10049136	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300031682\|Ga0318560_10276536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	904	Open in IMG/M
3300031708\|Ga0310686_103455775	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031719\|Ga0306917_10484476	Not Available	970	Open in IMG/M
3300031723\|Ga0318493_10485659	Not Available	682	Open in IMG/M
3300031726\|Ga0302321_103079894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300031747\|Ga0318502_10483659	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300031751\|Ga0318494_10106257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1552	Open in IMG/M
3300031765\|Ga0318554_10155000	Not Available	1301	Open in IMG/M
3300031768\|Ga0318509_10335110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	847	Open in IMG/M
3300031770\|Ga0318521_10011080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3880	Open in IMG/M
3300031777\|Ga0318543_10413328	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300031779\|Ga0318566_10204888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	980	Open in IMG/M
3300031779\|Ga0318566_10660658	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031795\|Ga0318557_10213205	All Organisms → cellular organisms → Bacteria → Proteobacteria	882	Open in IMG/M
3300031795\|Ga0318557_10554209	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031797\|Ga0318550_10117349	All Organisms → cellular organisms → Bacteria → Proteobacteria	1264	Open in IMG/M
3300031797\|Ga0318550_10391077	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300031821\|Ga0318567_10646759	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300031833\|Ga0310917_11206418	Not Available	503	Open in IMG/M
3300031846\|Ga0318512_10361581	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031910\|Ga0306923_12272911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	542	Open in IMG/M
3300031912\|Ga0306921_10228108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	2182	Open in IMG/M
3300031912\|Ga0306921_11021564	Not Available	931	Open in IMG/M
3300031912\|Ga0306921_11372629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	778	Open in IMG/M
3300031912\|Ga0306921_12301427	Not Available	565	Open in IMG/M
3300031941\|Ga0310912_10219176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1458	Open in IMG/M
3300031942\|Ga0310916_11403885	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300031945\|Ga0310913_10190133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1431	Open in IMG/M
3300031945\|Ga0310913_10600506	Not Available	780	Open in IMG/M
3300031947\|Ga0310909_10046944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3298	Open in IMG/M
3300031947\|Ga0310909_10067684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	2797	Open in IMG/M
3300031954\|Ga0306926_10087608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3798	Open in IMG/M
3300031954\|Ga0306926_12787580	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300032001\|Ga0306922_11954689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300032025\|Ga0318507_10306006	Not Available	691	Open in IMG/M
3300032039\|Ga0318559_10032665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2091	Open in IMG/M
3300032044\|Ga0318558_10392456	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300032059\|Ga0318533_10195674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1446	Open in IMG/M
3300032063\|Ga0318504_10237926	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300032064\|Ga0318510_10459176	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300032090\|Ga0318518_10223580	Not Available	965	Open in IMG/M
3300032091\|Ga0318577_10437372	Not Available	625	Open in IMG/M
3300032094\|Ga0318540_10264529	Not Available	830	Open in IMG/M
3300032094\|Ga0318540_10462430	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.64%
Host-Associated	Host-Associated	6.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.82%
Plants	Host-Associated → Plants	5.45%
Aquatic	Environmental → Aquatic	1.82%
Fungi	Host-Associated → Fungi	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Peat	Environmental → Terrestrial → Peat	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Roots	Host-Associated → Plants → Roots	0.91%
Mycelium	Host-Associated → Fungi → Mycelium	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.91%
Loam	Environmental → Terrestrial → Soil → Loam	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	59.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012056	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ009 MetaG	Host-Associated	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027307	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1008211452	3300004082	Bog Forest Soil	VLVSAEFAAAVTNHRRLRPLGRHRLRGVREAREVYALDLDTYE*
Ga0066395_100190163	3300004633	Tropical Forest Soil	EAFCEPLGRQVLVSAELAAAVGANCRLVPLGCHALRGVREMQEIYGLDLGQLQSSVAL*
Ga0070710_111820911	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VLVSAEFAAAAGSGNGLHPMGHHRLRGVREPRAIYGLDL*
Ga0070681_117118772	3300005458	Corn Rhizosphere	GHNLLVSAEFAEAVGHSHRLRSLGRHTLRGVREPQEIYGLEPRA*
Ga0066700_105533951	3300005559	Soil	LGRKVLVSAEFAAAAGSCNGLQPLGHHRLRGVRELRPIYALDL*
Ga0066699_109119371	3300005561	Soil	VLVSAEFAAATGISPRLTSLGRHELRGVRELREVYGLDLGS*
Ga0066903_1024469291	3300005764	Tropical Forest Soil	VLVSAELAAAVGANCRLVPLGCHALRGVREMQEIYGLDLG*
Ga0066903_1025851773	3300005764	Tropical Forest Soil	CEPLGRNVLVSVEFAEAIGSFEGLQSLGHHRLRGVREPRAIYGLEL*
Ga0066903_1071011271	3300005764	Tropical Forest Soil	RNVLVSAELALAAGRDGRLVPLGRYSLRGIREARAIYGLE*
Ga0066651_100481901	3300006031	Soil	RRVLVSAEFAAATGISPRLTSLGRHELRGVRELREVYGLDLGS*
Ga0070765_1016464462	3300006176	Soil	RKVLVSAEFAAAAGSCTGLQPLGHHRLRGVREPRAIYGLDV*
Ga0079221_105914503	3300006804	Agricultural Soil	GRKVLVSAEFAATAGSCNGLQPLGHHRLRGVREPRAIYGLDL*
Ga0111539_106077602	3300009094	Populus Rhizosphere	LISAALAVAVSDRSRLVRLGYHILRGVREPREIYALDLGLTD*
Ga0105242_114290042	3300009176	Miscanthus Rhizosphere	CEPLGRKVLVSEEFVTAAGTCNELQPLGHHRLRGVREPRAIYGLNL*
Ga0126384_111336151	3300010046	Tropical Forest Soil	AELAAAVGEDCRLVPLGLHTLRGVREAREVYGLEFV*
Ga0134067_104406831	3300010321	Grasslands Soil	AEFAAAVGDVGRLQPLGRHTLRGVREPREIYGVVVGR*
Ga0126370_106451951	3300010358	Tropical Forest Soil	EPLGRKVLVSADLAAAVGYDCRLVPLGQHRLRGVREPREIYGLELV*
Ga0126378_101152901	3300010361	Tropical Forest Soil	SAEFALAAGTCTGLRPLGRHRLRGVREPRAVHALDL*
Ga0126377_118232192	3300010362	Tropical Forest Soil	AFCEPLGRQVLVSAELAAAVGANCRLVPLGRHALRGVRGMQEIYGLDLGQLQSSVAL*
Ga0126377_127140181	3300010362	Tropical Forest Soil	KVLVSAELAAVIGEDDRLVPLGSHALRGVREPREIFGVDLG*
Ga0126383_102246211	3300010398	Tropical Forest Soil	PLGRQVLVSAELAAAVGANCRLVPLGRHALRGVRGMQEIYA*
Ga0153925_10308792	3300012056	Attine Ant Fungus Gardens	KVLVSAEFAAAAGACIGLQPLGRHRLRGVRETRAIYGLDV*
Ga0137378_107395292	3300012210	Vadose Zone Soil	SAEFAAALGDSARLQPLGRHALRGVREPREIYAPEAGS*
Ga0137377_115012392	3300012211	Vadose Zone Soil	RNVLVSAEFAAALGDGVRLEPLGRHALRGVREPREIYAPEAGS*
Ga0137384_104656032	3300012357	Vadose Zone Soil	NVLVSAEFAAALGDGARLQPLGRHALRGVREPREIYSPEAGS*
Ga0137360_111843701	3300012361	Vadose Zone Soil	LVSAELAAAVGNGCRLEPLGRHTLRGLREPREIYGLDLGSRF*
Ga0137390_102060974	3300012363	Vadose Zone Soil	AEFAAAAGDSRRLQPLGYHRLRGVREPRAIYGLDLY*
Ga0137390_107678011	3300012363	Vadose Zone Soil	LGRNVLVSAEFAAALGDSVRLQPLGRHALRGVREPREIYAPEAAS*
Ga0163162_105151441	3300013306	Switchgrass Rhizosphere	NLLGSAEFAEAVGDSHRLRSLGRHTLRGVREPQEIYGLEPRA*
Ga0075326_10161161	3300014271	Natural And Restored Wetlands	RKVLVSAELAAVVGDRRRLEPLGTHVLRGVRAPRKIYGLDLGFKP*
Ga0182036_110368993	3300016270	Soil	VLVSAEFAAAAESSTGLQPLGHHRLRGVRELRAIYGLHV
Ga0182041_112580092	3300016294	Soil	LVSAELAAVVGNSRHLEPLGHHRLRGVRDARVIYGLDL
Ga0182035_107551653	3300016341	Soil	VLVSAELAAVVADKCRLVPVGYHTLRGIREMREIYGLELG
Ga0182035_115336921	3300016341	Soil	ILVSAELAAAVGDSHCLQPLGRHRLRGVSEPRAIYALEF
Ga0182034_106671691	3300016371	Soil	VLVSAELAAAVGESCRLVPLGRHVLRGVREVREIYGLEIG
Ga0182034_109501653	3300016371	Soil	RSVLVSAEFAEAIGSFEGLQFLGHHRLRGVREPRAIYGLEL
Ga0182038_118773372	3300016445	Soil	KVLVSAELAATVGESRRLVLLGCHKLRGVGEMREVYGLELG
Ga0187821_100314391	3300017936	Freshwater Sediment	LVSAEFAAAAEQPDRLVSLGEHLLRGVREPREIFGLVRE
Ga0187778_109049622	3300017961	Tropical Peatland	VLVSAEFAAAARDPGRLRRLGRHPLRGVRDEREIFALAAIPAR
Ga0210403_108862313	3300020580	Soil	LVSAEFAAAAGSCNGLQPLGHHRLRGVREPRAIYGLDL
Ga0210404_108270413	3300021088	Soil	VSAEFAAALGDSPRLQPLGHHALRGVRETREIYALDLDA
Ga0213875_102735493	3300021388	Plant Roots	EPLGRNVLVSAEFADATGSFEGLQFLGHHRLRGVREPRAIYGLEL
Ga0213878_100352961	3300021444	Bulk Soil	ELAAAVGDSHRLKPLGRHRLRGVSEPRAIYALAPLG
Ga0213878_102986392	3300021444	Bulk Soil	LGHRILVSAELAAAVGNSHQLKPLGRHRLRGVSEPRAIYALEF
Ga0210402_104409914	3300021478	Soil	KVLVSAEFAAAAGSCNGLQPLGHYRLRGVRAPRAIYGLDL
Ga0126371_106700062	3300021560	Tropical Forest Soil	TLCEPLGRQVLISAELASVVGDNPRLVPLGRHALRGVREPREIYGLELT
Ga0126371_120750232	3300021560	Tropical Forest Soil	QVLVSAELAAAVGANRRLVPLGCHALRGVREMQEIYGLDLG
Ga0126371_126700481	3300021560	Tropical Forest Soil	VSAELAAAVGDDPHLYSLGSHTLRGVREGRELYGLSLG
Ga0242668_10593373	3300022529	Soil	KVLVSAEFAAAAGSCHGLQPLGHHPLRGVREPRAIYGLDV
Ga0242662_102443691	3300022533	Soil	EPLGRKVLVSAEFAAAAGSCNGLQPLGHHRLRGVREPRAIYGLDL
Ga0207663_105032131	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	NMLVSAAFARALADPARLTSLGHHDLRGVREPREIFAVVAGE
Ga0207681_117070621	3300025923	Switchgrass Rhizosphere	LGRNLLVSAEFAAAVCDRARLRPLRRHTLRGVREPREIYGLEPD
Ga0207711_119880011	3300025941	Switchgrass Rhizosphere	LGRNLLVSAEFAAAVGDRARLRPLGRRTLRGVREPREIYGLEPG
Ga0209327_10003741	3300027307	Forest Soil	LGRSVLLSAELAAAVEPDHRLVPLGRHTLRGVREPHAIYALESGASSGS
Ga0209579_105935742	3300027869	Surface Soil	ASATLAGAVGDKRRLASLGRHALRGVREPREVYALTLGS
Ga0170834_1120470762	3300031057	Forest Soil	LGCQVLVSAELAAAVDANCRLVPLGRHALRGVREMQEIYGLDFG
Ga0170820_162434841	3300031446	Forest Soil	EALCEPLGCQVLVSAELAAAVDANCRLVHLGRHALRGVREMQEIYGLDLG
Ga0318541_102488592	3300031545	Soil	EPLDRKVLVSAELAAAVGASCRLVPLGHHELRGVREPREIYGLELG
Ga0318541_105271531	3300031545	Soil	TLCEPLGRRVLVSAELAAAVGDSHRLEALGCHRLRGVSEPRAIYALEL
Ga0318528_103214481	3300031561	Soil	AELASVLGDNPRLVPLGRHALRGVREPREIYGLEIV
Ga0318573_100468943	3300031564	Soil	LVSAELAAAVGESRRLVPLGRHALRGVREVREIYGLEIG
Ga0310915_110754131	3300031573	Soil	LGRQVLVSAELAAALGESRRLVPLGKHELRGVREPREIYGLDLG
Ga0318574_100565422	3300031680	Soil	PLGRKVLVSADLAAAVGYDCRLVPLGQHRLRGVREPRKIYGLKLG
Ga0318574_104282441	3300031680	Soil	VLVSAELAAVVGNSRHLEPLGHHRLRGVRDARVIYGLDL
Ga0318572_108668151	3300031681	Soil	LVSEELATAVGESRRLVPLGRHKLRGVRDVREVYGLELG
Ga0318560_100491364	3300031682	Soil	GYKVLVSADLAAAADDHCRLGALGHHRLRGVREPRAIYALIF
Ga0318560_102765361	3300031682	Soil	VLVSADLAAAVGYDCRLVPLGYHALRGVHEPREIYGLDIS
Ga0310686_1034557753	3300031708	Soil	GHNVLVSAEFSDAVTDNRRLLPLGRHRLRGVREESEVYALDLGAED
Ga0306917_104844762	3300031719	Soil	EFAAAVGDSGRLVPLGRHTLRGVREMQEIYGLDLG
Ga0318493_104856591	3300031723	Soil	ELAAAVGANCSLIPLGCHTLRGVREMQEIYGLDLG
Ga0302321_1030798941	3300031726	Fen	SADLAAAAGPGAGRLVPLGRHRLRGVREVGEIYALTV
Ga0318502_104836591	3300031747	Soil	VLVSAELAAEVADTHRLQLLGEHSLRGVREPRAIYALIF
Ga0318494_101062573	3300031751	Soil	VLVSAELTAAVGASCRLVPLGQHTLRGVREMREIYGLELG
Ga0318554_101550002	3300031765	Soil	SAELAAVVGDSCRLVPLGHHELRGVREPREIYGLELG
Ga0318509_103351101	3300031768	Soil	PLGRKVLVSADLAAAVGYDCRLVPLGYHALRGVHEPREIYGLDIS
Ga0318521_100110804	3300031770	Soil	LGRKVLVSADLAAAVGYDCRLVPLGQHRLRGVREPRKIYGLKLG
Ga0318543_104133281	3300031777	Soil	KVLVSADLAAAADDNCRLEPLGHHRLRGVREPRAIYALIF
Ga0318566_102048881	3300031779	Soil	PLDRKVLVSAELAAAVGASCRLVPLGHHELRGVREPREIYGLELG
Ga0318566_106606582	3300031779	Soil	RVLVSAELAAAVGESRRLVPLGRHALRGVREVREIYGLEIG
Ga0318557_102132053	3300031795	Soil	IEGLCEPLGYQVLVSAELAAAVDASCRLVPLGCHALRGVREMQEIYGVDHLG
Ga0318557_105542092	3300031795	Soil	LGRKVLVSAELAAAVGESCRLVPLGRHVLRGVREVREIYGLEIG
Ga0318550_101173492	3300031797	Soil	LVSAELAAAVGDRCRLEPLGRHTLRGVREAREIYGLELG
Ga0318550_103910771	3300031797	Soil	GRTVLVSAELAAVVGNSRRLEPLGHHRLRGVRDARVIYGLDL
Ga0318567_106467592	3300031821	Soil	EPLGRKVLVSAELAATVGESRRLVLLGCHKLRGVGEMREVYGLELG
Ga0310917_112064181	3300031833	Soil	PLGCQVLVSAELAAAVGANRRLVPLGCHALRGVREMQEIYGLDLG
Ga0318512_103615811	3300031846	Soil	LDRKVLVSAELAAAVGASCRLVPLGHHELRGVREPREIYGLEIV
Ga0306923_122729112	3300031910	Soil	SADLAAAVGYDCRLVPLGQHRLRGVREPREIYGLELV
Ga0306921_102281084	3300031912	Soil	ALCEPLGCQVLVSAELAAAVGANRRLVPLGCHALRGVREMQEIYRLDLG
Ga0306921_110215641	3300031912	Soil	VSAEFAAAVGDSGRLVPLGRHTLRGVREMQEIYGLDLG
Ga0306921_113726291	3300031912	Soil	KVLVSADLAAAVGYDCRLVPLGQHRLRGVREPREIYGLELV
Ga0306921_123014272	3300031912	Soil	IEVLCEPLGRRVLVSAELAAVVADKCRLVPVGHHTLKGIREMREIYGLELG
Ga0310912_102191761	3300031941	Soil	SAELAAAVSANRRLVPLGCHALRGVREMQEIYGLDLG
Ga0310916_114038851	3300031942	Soil	VSAELASVVGDSCRLVPLGHHELRGVREPREIYGLDLGSRP
Ga0310913_101901333	3300031945	Soil	ELAAAVDANCHLVPLGCHALRGVREMQEIHGLDLG
Ga0310913_106005061	3300031945	Soil	AELAAAVGANRRLVPLGCHALRGVREMQEIYGLDLG
Ga0310909_100469441	3300031947	Soil	EMAAATGDSCRLVPLGRHKLRGVSEAREIYGLEIA
Ga0310909_100676841	3300031947	Soil	EPLGCQVLVSAELAAAVGANRRLVPLGCHPLRGVREMQEIYGLDLG
Ga0306926_100876081	3300031954	Soil	PLGRQVLVSAELAAALGESRRLVPLGKHELRGVREPREIYGLDLG
Ga0306926_127875801	3300031954	Soil	LVSAELAAALGESRRLVPLGRHQLRGVREPREIYGLEPG
Ga0306922_119546892	3300032001	Soil	LGHRILVSAELVAAVGDSHRLEPLGRHRLRGVSEPRAIYALEL
Ga0318507_103060062	3300032025	Soil	VLVSAELAAAVDANCHLVPLGCHALRGVREMQEIHGLDLG
Ga0318559_100326653	3300032039	Soil	METLCEPLGRQVLVSAELAAALGESRRLVPLGKHELRGVREPREIYGLDLG
Ga0318558_103924563	3300032044	Soil	PLGRKVLVSAEFAAAAESSTGLQPLGHHRLRGVREPRAIYGLEL
Ga0318533_101956741	3300032059	Soil	PLGRQVLISAELAAAVGANCRLIPLGFHALRGVREMQEIYGLDLG
Ga0318504_102379261	3300032063	Soil	LDRKVLVSAELAAAVGASCRLVPLGHHELRGVREPREIYGLELG
Ga0318510_104591762	3300032064	Soil	LVSAEFAEAIGSFEGLQFLGHHRLRGVREPRAIYGLEL
Ga0318518_102235802	3300032090	Soil	AELAAAVGANRRLVPLGCHALRGVREMQEIYRLDLG
Ga0318577_104373721	3300032091	Soil	AELAAAVGANCSLIPLGCHTLRGVREMQEIYGLDLG
Ga0318540_102645291	3300032094	Soil	LCEPLGCQVLVSAELAAAVDANCRLVPLGCHALRGVREMQEIHGLDLG
Ga0318540_104624301	3300032094	Soil	PLGRSVLVSAELAAALGESRRLVPLGRHELRGVREPREIYGLDFG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087477

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences