Metagenome Family F087453

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087453
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	84 residues
Representative Sequence	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	65.45 %
% of genes near scaffold ends (potentially truncated)	46.36 %
% of genes from short scaffolds (< 2000 bps)	87.27 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (57.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (78.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.14% β-sheet: 0.00% Coil/Unstructured: 93.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.14
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.14
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01124	MAPEG	24.55
PF00762	Ferrochelatase	3.64
PF00873	ACR_tran	2.73
PF12700	HlyD_2	1.82
PF13437	HlyD_3	1.82
PF16576	HlyD_D23	1.82
PF13505	OMP_b-brl	0.91
PF13546	DDE_5	0.91
PF03061	4HBT	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0276	Protoheme ferro-lyase (ferrochelatase)	Coenzyme transport and metabolism [H]	3.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.91 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.91 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.91 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.18 %
Unclassified	root	N/A	9.09 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13.64 %
Unclassified	root	N/A	9.09 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	49.09 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	13.64 %
Unclassified	root	N/A	9.09 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	37.27 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	12.73 %
Unclassified	root	N/A	9.09 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	7.27 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.91 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.91 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	37.27 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	12.73 %
Unclassified	root	N/A	9.09 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	7.27 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.91 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.91 %

Name	Rank	Taxonomy	Distribution
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	12.73 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	11.82 %
Unclassified	root	N/A	9.09 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	7.27 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	3.64 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	2.73 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.91 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.91 %

Name	Rank	Taxonomy	Distribution
Oxalobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	12.73 %
Unclassified	root	N/A	9.09 %
Bradyrhizobium sp. URHD0069	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	7.27 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	7.27 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	4.55 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	3.64 %
Bradyrhizobium valentinum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	2.73 %
Mycobacterium kansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	0.91 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0856895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2463	Open in IMG/M
3300001431\|F14TB_101039973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	909	Open in IMG/M
3300003659\|JGI25404J52841_10127586	Not Available	537	Open in IMG/M
3300004114\|Ga0062593_103374669	Not Available	512	Open in IMG/M
3300004156\|Ga0062589_101932358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	596	Open in IMG/M
3300004463\|Ga0063356_102594073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300004463\|Ga0063356_103167482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	709	Open in IMG/M
3300004479\|Ga0062595_100965866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	727	Open in IMG/M
3300005328\|Ga0070676_10603085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	792	Open in IMG/M
3300005334\|Ga0068869_100396961	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300005338\|Ga0068868_100074323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2714	Open in IMG/M
3300005338\|Ga0068868_100113942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2199	Open in IMG/M
3300005339\|Ga0070660_101841002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	516	Open in IMG/M
3300005343\|Ga0070687_100911317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	631	Open in IMG/M
3300005347\|Ga0070668_100871757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	803	Open in IMG/M
3300005353\|Ga0070669_100922145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300005355\|Ga0070671_100353260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1255	Open in IMG/M
3300005366\|Ga0070659_100675519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	892	Open in IMG/M
3300005367\|Ga0070667_100524210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1087	Open in IMG/M
3300005367\|Ga0070667_101573361	Not Available	618	Open in IMG/M
3300005406\|Ga0070703_10044854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1392	Open in IMG/M
3300005434\|Ga0070709_11443340	Not Available	558	Open in IMG/M
3300005444\|Ga0070694_101049557	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300005445\|Ga0070708_101071036	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005455\|Ga0070663_100049822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2976	Open in IMG/M
3300005455\|Ga0070663_100168188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1692	Open in IMG/M
3300005455\|Ga0070663_101387893	Not Available	622	Open in IMG/M
3300005459\|Ga0068867_101204135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	696	Open in IMG/M
3300005471\|Ga0070698_101173793	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005539\|Ga0068853_100632437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1018	Open in IMG/M
3300005545\|Ga0070695_100270057	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300005547\|Ga0070693_100271204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1133	Open in IMG/M
3300005547\|Ga0070693_100876722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	671	Open in IMG/M
3300005564\|Ga0070664_100353288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1337	Open in IMG/M
3300005615\|Ga0070702_100081722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1937	Open in IMG/M
3300005718\|Ga0068866_10239220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1105	Open in IMG/M
3300005719\|Ga0068861_100459655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1142	Open in IMG/M
3300005844\|Ga0068862_100708766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	975	Open in IMG/M
3300005844\|Ga0068862_100877766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	880	Open in IMG/M
3300005844\|Ga0068862_101771690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	626	Open in IMG/M
3300005844\|Ga0068862_102614486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	516	Open in IMG/M
3300005983\|Ga0081540_1003535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	12317	Open in IMG/M
3300006038\|Ga0075365_10121829	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300006048\|Ga0075363_100004117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	6310	Open in IMG/M
3300006051\|Ga0075364_10066129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	2374	Open in IMG/M
3300006177\|Ga0075362_10448908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300006186\|Ga0075369_10356508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	687	Open in IMG/M
3300006195\|Ga0075366_10278205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1023	Open in IMG/M
3300006195\|Ga0075366_10458660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	786	Open in IMG/M
3300006844\|Ga0075428_100431539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1412	Open in IMG/M
3300006881\|Ga0068865_102106560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	513	Open in IMG/M
3300006894\|Ga0079215_11352194	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300006904\|Ga0075424_100850000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	973	Open in IMG/M
3300006914\|Ga0075436_100333132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1092	Open in IMG/M
3300006954\|Ga0079219_10146980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1251	Open in IMG/M
3300009156\|Ga0111538_10497015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1546	Open in IMG/M
3300009177\|Ga0105248_11441787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300010397\|Ga0134124_10742624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	975	Open in IMG/M
3300010399\|Ga0134127_12920990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	557	Open in IMG/M
3300012203\|Ga0137399_10524408	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300012943\|Ga0164241_10287423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1175	Open in IMG/M
3300012960\|Ga0164301_10402176	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300014969\|Ga0157376_11206203	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300015374\|Ga0132255_102060693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	869	Open in IMG/M
3300017792\|Ga0163161_11198385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	656	Open in IMG/M
3300018027\|Ga0184605_10267320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300018061\|Ga0184619_10016493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	2990	Open in IMG/M
3300018466\|Ga0190268_10216299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1064	Open in IMG/M
3300018466\|Ga0190268_11862200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	546	Open in IMG/M
3300018476\|Ga0190274_10070349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2640	Open in IMG/M
3300019377\|Ga0190264_10362376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	917	Open in IMG/M
3300025900\|Ga0207710_10058789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1739	Open in IMG/M
3300025901\|Ga0207688_10029878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3004	Open in IMG/M
3300025907\|Ga0207645_10191797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343	Open in IMG/M
3300025917\|Ga0207660_10453336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	1037	Open in IMG/M
3300025919\|Ga0207657_10053552	All Organisms → cellular organisms → Bacteria	3495	Open in IMG/M
3300025923\|Ga0207681_10234296	All Organisms → cellular organisms → Bacteria → Proteobacteria	1426	Open in IMG/M
3300025923\|Ga0207681_11397071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	588	Open in IMG/M
3300025932\|Ga0207690_10263556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1336	Open in IMG/M
3300025942\|Ga0207689_10190015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1694	Open in IMG/M
3300025972\|Ga0207668_10216034	Not Available	1536	Open in IMG/M
3300025972\|Ga0207668_10701513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300025972\|Ga0207668_10718677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	879	Open in IMG/M
3300025972\|Ga0207668_11039127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	733	Open in IMG/M
3300025972\|Ga0207668_11043944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	731	Open in IMG/M
3300025981\|Ga0207640_11973651	Not Available	528	Open in IMG/M
3300025986\|Ga0207658_10062194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	2793	Open in IMG/M
3300025986\|Ga0207658_11647214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300026023\|Ga0207677_10701319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	898	Open in IMG/M
3300026035\|Ga0207703_10248428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1602	Open in IMG/M
3300026041\|Ga0207639_11222777	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300026078\|Ga0207702_11111691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	784	Open in IMG/M
3300026088\|Ga0207641_10080715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	2823	Open in IMG/M
3300026089\|Ga0207648_10189751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1821	Open in IMG/M
3300026095\|Ga0207676_10409925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1268	Open in IMG/M
3300026118\|Ga0207675_100385269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1379	Open in IMG/M
3300026142\|Ga0207698_12208635	Not Available	563	Open in IMG/M
3300027907\|Ga0207428_11215968	Not Available	524	Open in IMG/M
3300028786\|Ga0307517_10391530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	739	Open in IMG/M
3300028802\|Ga0307503_10025314	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300031455\|Ga0307505_10148224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	1071	Open in IMG/M
3300031731\|Ga0307405_10531600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	948	Open in IMG/M
3300031854\|Ga0310904_10177154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1265	Open in IMG/M
3300031901\|Ga0307406_10181748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1532	Open in IMG/M
3300031995\|Ga0307409_100326658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium	1438	Open in IMG/M
3300032002\|Ga0307416_102541436	Not Available	610	Open in IMG/M
3300032004\|Ga0307414_11062694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	747	Open in IMG/M
3300032005\|Ga0307411_10509608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1019	Open in IMG/M
3300032126\|Ga0307415_100177586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium valentinum	1667	Open in IMG/M
3300032174\|Ga0307470_10094332	All Organisms → cellular organisms → Bacteria → Proteobacteria	1694	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	70.00%
Environmental	Environmental	30.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	70.00%
Terrestrial	Environmental → Terrestrial	28.18%
Aquatic	Environmental → Aquatic	1.82%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.45%
Soil	Environmental → Terrestrial → Soil	28.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.27%
Roots	Host-Associated → Plants → Roots	7.27%
Sediment	Environmental → Aquatic → Sediment	1.82%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	26.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	21.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.64%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	6.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.18%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.18%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.27%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	6.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08568952	3300000033	Soil	MKDLGGRLSDSGSRSGHICDGPNATRVIVRGNATNATGLGNPAAQQAAHADMQQSPAQFRSEAGGILACFH*
F14TB_1010399732	3300001431	Soil	MKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVAQQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA*
JGI25404J52841_101275861	3300003659	Tabebuia Heterophylla Rhizosphere	MXYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGSPVAQQAAHADRQQSPVQFRSEAGGIPACFHCACCNDAGFNDEGLADRSDS*
Ga0062593_1033746692	3300004114	Soil	VIGWIQMKDLGGRLSDSGPRSGHICDGPNATRVIVRGNATNATGLGNPAAQQAAHADMQQSPAQFRSEAGGILACFH*
Ga0062589_1019323581	3300004156	Soil	MKDLGGRLSDSGPRSGHICDGPNATRVIVRGNATNATGLGNPAAQQAAHADMQQSPAQFRSEAGGILACFH*
Ga0063356_1025940731	3300004463	Arabidopsis Thaliana Rhizosphere	MKCFGGRRSDSGSRSGHICDGANATRVIDRGNVMNVTGLGNPAAQQPAHADRQQPPVQLRSEAGSVPV*
Ga0063356_1031674821	3300004463	Arabidopsis Thaliana Rhizosphere	GWIQMKCFGGRRSDSGSRSGHICDGANATRVIDRRTGMNVTGLGNPAAQQAAQADRQQPPAQLRSEAGSVPACFHCDCRNDAGAATRSDS*
Ga0062595_1009658662	3300004479	Soil	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0070676_106030852	3300005328	Miscanthus Rhizosphere	LSGWIQMKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0068869_1003969612	3300005334	Miscanthus Rhizosphere	MKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0068868_1000743233	3300005338	Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNATGLGSPVAQQAAHADKQQSPVQFRSEAG
Ga0068868_1001139423	3300005338	Miscanthus Rhizosphere	LGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0070660_1018410021	3300005339	Corn Rhizosphere	GWIQMKCFGGRRSDSGSRSGQICDGANATRAIERGNGTNATELGNPAAQQAAHAKKQQPPVQLRSEAGSAPARPD*
Ga0070687_1009113171	3300005343	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGSPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0070668_1008717572	3300005347	Switchgrass Rhizosphere	MAVGCGQHAACLANAQFGRIQMKCFGGRLSDSGSRAGHICDGANATRVIVRWSGMNVTGLGNPAAQQAAHADRQQPPVQFRSEAGSVPACFHCD
Ga0070669_1009221451	3300005353	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0070671_1003532603	3300005355	Switchgrass Rhizosphere	LANSLSGWIQMKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0070659_1006755192	3300005366	Corn Rhizosphere	MKYLGGRLSDSGWRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPA
Ga0070667_1005242101	3300005367	Switchgrass Rhizosphere	MKCLGGRLSDSGSRSGQICDGANPTRVIDRGNGTNATGLGNPVAQQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0070667_1015733612	3300005367	Switchgrass Rhizosphere	MKDLGGRLRDSGLRSGHIFDGPNAIRVIVRDNGTNATGLGNPAAQQAAHAEKQQSPAQFRSEAGGVLVCFHCACFNDAGVADRSYSCVAA*
Ga0070703_100448541	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	GHICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0070709_114433402	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LANSLSGWIQMKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0070694_1010495572	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFGGRLSDSGSRSGHICDGTNATRVIDRENGTNATGLGNPAAQQAAHAKKQHPPVQLRSEAGNVPACPHGARCNDAG
Ga0070708_1010710362	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVAQQPAHAKKQQPPLQLRSDAGSVPACPHWARCSD
Ga0070663_1000498223	3300005455	Corn Rhizosphere	MKCFGGRRSDSGSRSGHICDGANATRVIDRGNVMSVTVLGNPAAQQAAHADRQQPPVQLRSEAGSVPV*
Ga0070663_1001681881	3300005455	Corn Rhizosphere	GWIQMKCFGGRRSDSGSRSGQICDGANATRAIERGNGTNATELGNPAAQQAAHAKKQQPPVQLRSEAGSVPAWPD*
Ga0070663_1013878932	3300005455	Corn Rhizosphere	MAVGCGQHAACLANAQFGRIQMKCFGGRLSDSGSRAGHICDGANATRVIVRWSGMNVTGLGNPAAQQAAHADRQQPPVQFRSEAGSVPACFHCDCRNDAGVAGRSDS*
Ga0068867_1012041351	3300005459	Miscanthus Rhizosphere	AVGCGQHGACLANSWFGWIQMRCFGGRRSDSGSRSGHAGDGANATRVIDGGNGTNATGLGNPAAQQAAHADRQQPPVQLRSEAGSVPV*
Ga0070698_1011737931	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFGGRLSDSGSRSGHICDGTNATRVIDRENGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPACPH*
Ga0068853_1006324372	3300005539	Corn Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGSPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0070695_1002700572	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MKCLGGRLSDSGSRSGQICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWACCSDAGVAGRSDA*
Ga0070693_1002712042	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRCFGGRRSDSGSRSGHICDGANATRVIDRGNVMSVTGLGNPAAQQAAHADRQQPPVQLRSEAGSVPV*
Ga0070693_1008767222	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLGGRLRDSGLRSGHIFDGPNAIRVIVRDNGTNATGLGNPAAQQAAHAEKQQSPAQFRSEAGGVLVCFHCAGFNDAGVADRSYSCVAA*
Ga0070664_1003532882	3300005564	Corn Rhizosphere	MKCFGGRRSDSGSRSGHICDGANATRVIDRGNVMNATGLGNPAAQQPAHADRQQPPVQLRSEAGSVPV*
Ga0070702_1000817222	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGTATNAMGLGSPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0068866_102392201	3300005718	Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAG
Ga0068861_1004596552	3300005719	Switchgrass Rhizosphere	MKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPACPH*
Ga0068862_1007087661	3300005844	Switchgrass Rhizosphere	MKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPAWPH*
Ga0068862_1008777662	3300005844	Switchgrass Rhizosphere	LFGWIQMKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0068862_1017716901	3300005844	Switchgrass Rhizosphere	AVACGQHAACLANSLFGWIQMKCLGGRLSDSGSRSGQICDGANPTRVIDRGNGTNATGLGNPVAQQPAHAKKQQPPLQLRSDAGSVPACPHWACCSDAGVAGRSDA*
Ga0068862_1026144862	3300005844	Switchgrass Rhizosphere	IAVACGQHAACLANSLFGWIQMKCLGGRLSDSGSRSGQICDGANPTRVIDRENGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0081540_10035359	3300005983	Tabebuia Heterophylla Rhizosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGSPVAQQAAHADRQQSPVQFRSEAGGIPACFHCACCNDAGFNDEGLADRSDS*
Ga0075365_101218291	3300006038	Populus Endosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFQCACCNDADLAGRSDS*
Ga0075363_1000041171	3300006048	Populus Endosphere	MKDLGGRLRDSGLRSGHIFDGPNAIRVIVRDNGTNATGLGNPAAQQAAHAEKQQSPAQFRSEAGGVLVCFHCACFNDAGVADRSYS
Ga0075364_100661293	3300006051	Populus Endosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAIGLGSPVAQQAAHADKQQSPVQFRSEAGGIPACFHCTCCNDADLAGRSDS*
Ga0075362_104489082	3300006177	Populus Endosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDADLAGR
Ga0075369_103565081	3300006186	Populus Endosphere	MKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPA
Ga0075366_102782053	3300006195	Populus Endosphere	MKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0075366_104586601	3300006195	Populus Endosphere	NSLSGWIQMKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS*
Ga0075428_1004315392	3300006844	Populus Rhizosphere	LGGRLSDSGSRSGAICDGANATRVIDRGNRTNATGLGRPAAQQAAHANMQQPPVQLRSEAGGVPACLH*
Ga0068865_1021065602	3300006881	Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFH
Ga0079215_113521941	3300006894	Agricultural Soil	TKCLGGRLSDSGSRSGHSCDGTNATRVIDRGSGTNPTALGNPAAQQATHADKQQSPVQFRSEAGGILSCFH*
Ga0075424_1008500003	3300006904	Populus Rhizosphere	NSLSGWIQMKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAIGLGSPVAQQAAHADKQQSPVQFRSEAGGIPACFHCTCCNDADLAGRSDS*
Ga0075436_1003331322	3300006914	Populus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDADLAGRSDS*
Ga0079219_101469802	3300006954	Agricultural Soil	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGSPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDADLVGRSDS*
Ga0111538_104970153	3300009156	Populus Rhizosphere	GQQAARLANSLSGWIQMKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFQCACCNDADLAGRSDS*
Ga0105248_114417871	3300009177	Switchgrass Rhizosphere	VSGGIQMKDLEGRLSASGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDAGVADRSYSCVAA*
Ga0134124_107426242	3300010397	Terrestrial Soil	RFGWIQMKDLGGRLRDSGLRSGHIFDGPNAIRVIVRDNGTNATGLGNPAAQQAAHAEKQQSPAQFRSEAGGVLVCFHCAGFNDAGVADRSYSCVAA*
Ga0134127_129209901	3300010399	Terrestrial Soil	IAVACGQHAACLANSPFGWIQMKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPACPHWARCSDAGVAGRSDA*
Ga0137399_105244081	3300012203	Vadose Zone Soil	MKYLGGRLSDSGSRCGHIYDGPNATRVIVRGNATNSTGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCND
Ga0164241_102874232	3300012943	Soil	MKDLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAAGLGNPAAQQAAHADMQQSPAQFRSEAGGILACFH*
Ga0164301_104021762	3300012960	Soil	MPRNSLFGWIQMKCFGGRLSDSGSRSGHICDGANATRVIERGNGTNATGLGRPAAQQAAHANKQQPPVQLRSEAGGVPACFHWARCSDAGVAGRSDSGAAT*
Ga0157376_112062032	3300014969	Miscanthus Rhizosphere	MKCFGGRLSDSGSRSGHICDGANATRVIERGNGTNATGLGRPAAQQAAHADKQQPPVQLRSEAEGIPAC
Ga0132255_1020606932	3300015374	Arabidopsis Rhizosphere	LGGRLSDSGSRSGHICDGANATRIIARGNETNATGLGNPAGQQAAHADKQQSPVQFRSEAGGIPACFHCALCTDADMAGRSD*
Ga0163161_111983851	3300017792	Switchgrass Rhizosphere	MKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA
Ga0184605_102673202	3300018027	Groundwater Sediment	WIQMKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNSMGLGNPVAQQAAHADKQQPPVQFRSEAGGISACFHCACCNDADLADRSDS
Ga0184619_100164933	3300018061	Groundwater Sediment	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNSMGLGNPVAQQAAHADKQQPPVQFRSEAGGISACFHCACCNDADLADRSDS
Ga0190268_102162992	3300018466	Soil	MKVLGGRLSDSGSRSGHICDGPKATRVIARGNATNSTGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCAICNDSDLCNDADLADRPDS
Ga0190268_118622001	3300018466	Soil	IAVACGQHMACLANSVIGWIQMKCFGGRLSDSGSRSGHICDGTNATRVIAWGKATNATGLGNPAAQQAAHADKQQSPVQFRSEAGGVPVCFH
Ga0190274_100703493	3300018476	Soil	MKCFGGRLSDSGSRSGHICDGANATRVIDLRTGMNVTGLGNPAAQQAAQADRQQPPAQLRSEAGSVSVGFHCDCRNDAGVAGRSDS
Ga0190264_103623762	3300019377	Soil	MKVLGGRLSDSGSRSGHICDGPKATRVIARGNATNSTGLGNPVAQQAAHADRQQSPVQFRSEAGGIPVCFHCVFCNDSDLGNDDADLADRPDS
Ga0207710_100587892	3300025900	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDADLAGRSDS
Ga0207688_100298782	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207645_101917972	3300025907	Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNAKNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207660_104533362	3300025917	Corn Rhizosphere	MKDLGGRLSDSGPRSGHICDGPNATRVIVRGNATNATGLGNPAAQQAAHADMQQSPAQFRSEAGGILACFH
Ga0207657_100535522	3300025919	Corn Rhizosphere	MKGLGGRLSDSGSRSGHICDGANATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207681_102342963	3300025923	Switchgrass Rhizosphere	LSDSGSRSGDICDGANATRVIDRGNRTNATGLGRPAAQQAAHANKQQPPVQLRSEAGGVPACFH
Ga0207681_113970712	3300025923	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGQICDGANATRVIDRGNGANATALGSPAAQQAAHAKKQQPPVQLRSDAGSVPACPHWAR
Ga0207690_102635562	3300025932	Corn Rhizosphere	MKDLGGRLRDSGLRSGHIFDGPNAIRVIVRDNGTNATGLGNPAAQQAAHAEKQQSPAQFRSEAGGVLVCFHCACFNDAGVADRSYSCVAA
Ga0207689_101900152	3300025942	Miscanthus Rhizosphere	MKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA
Ga0207668_102160342	3300025972	Switchgrass Rhizosphere	MKCLGGRLSDSGSRSGQICDGANPTRVIDRGNGTNATGLGNPVAQQPAHAKKQQPPLQLRSDAGSVPACPHWACCSDAGVAGRSDA
Ga0207668_107015131	3300025972	Switchgrass Rhizosphere	CLANSLFGWIQMKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA
Ga0207668_107186772	3300025972	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGQICDGANATRVIDRGNGANATALGSPAAQQAAHAKKQQPPVQLRSEAGSAPARPD
Ga0207668_110391272	3300025972	Switchgrass Rhizosphere	MKCFGGRLSDSGSRAGHICDGANATRVIVRWSGMNVTGLGNPAAQQAAHADRQQPPVQFRSEAGSVPACFHCDCRNDA
Ga0207668_110439441	3300025972	Switchgrass Rhizosphere	AGACGQHAACLANSPFGWIQMKGLGGRLSDSGSRSGHICDGANATRVIDRGNGTNATGLGNPAAQQAAHAKKQQPPVQLRSDAGSVPACPH
Ga0207640_119736511	3300025981	Corn Rhizosphere	MAVGCGQHAACLANAQFGRIQMKCFGGRLSDSGSRAGHICDGANATRVIVRWSGMNVTGLGNPAAQQAAHADRQQPPVQFRSEAGSVPACFHCDCRNDAGVAGRSDS
Ga0207658_100621943	3300025986	Switchgrass Rhizosphere	MKCLGGRLSDSGSRSGQICDGANPTRVIDRGNGTNATGLGNPVAQQPAHAKKQQPPLQLRSDAGSVPACPHWARCSDAGVAGRSDA
Ga0207658_116472142	3300025986	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDAD
Ga0207677_107013192	3300026023	Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNATGLGSPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207703_102484281	3300026035	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCNDADLVGRSDS
Ga0207639_112227772	3300026041	Corn Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGSPVAQQAAHADKQQSPVQFRSEAGGIPACFHCACCND
Ga0207702_111116911	3300026078	Corn Rhizosphere	CGQQAARLANSLSGWIQMKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207641_100807151	3300026088	Switchgrass Rhizosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSD
Ga0207648_101897512	3300026089	Miscanthus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPNATRVIVRGNATNAIGLGSPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207676_104099251	3300026095	Switchgrass Rhizosphere	GHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSDS
Ga0207675_1003852692	3300026118	Switchgrass Rhizosphere	MKCLGGRLSDSGSRSGHICDGANPTRVIDRGNGTNATGLGNPVALQPAHAKKQQPPLQLRSDAGSVPACPHWACCSD
Ga0207698_122086352	3300026142	Corn Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADLAGRSD
Ga0207428_112159681	3300027907	Populus Rhizosphere	MKYLGGRLSDSGSRSGHICDGPKATRVIVRGNATNAMGLGNPVAQQAAHADKQQSPVQFRSEAGSIPACFHCACCNDADL
Ga0307517_103915302	3300028786	Ectomycorrhiza	MPRKLFGWIQTKCFGGRLSDSGPRSGDICEGANATRVIDRGKGTNATGLGRPAAQQAAHADKQQPPVQLRSEAGGIPACFH
Ga0307503_100253142	3300028802	Soil	MKCFGGRLSDSGSRSAHICDGANATRVIERGNGTNATGLGRPAAQQAAHADKQQPPVQLRSEAGGIPACFH
Ga0307505_101482242	3300031455	Soil	MKCFGGRLSDSGSRSGHICDGANATRVIDRGKGTNATGLGRPAAQQAAHADKQQPPVQLRSEAGGIPACFH
Ga0307405_105316001	3300031731	Rhizosphere	MKVLGGRLSDSGSRSGHICDGPKATRVIARGNATNSTGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCAFCND
Ga0310904_101771542	3300031854	Soil	MKCFGGRLSDSGSRAGHICDGANATRVIVRWSGMNVTGLGNPAAQQAAHADRQQPPVQFRSEAGSVPACFHCDCRNDAGVAGRSDS
Ga0307406_101817482	3300031901	Rhizosphere	MKVLGGRLSDSGSRSGHICDGPKAIRVIARGNATNSTGLGNPVAQQAAHADKQQSPVQFRSEAGGIPVCFHCVFCNDSDLGNDDADLADRPDS
Ga0307409_1003266582	3300031995	Rhizosphere	MKDLGGRLSDSGSRSGHVCDGPNATRVIVRGNVTNGTGGGNPVAQQAAHADTQQSPEQFRSEAGGIFSCFHWACCSDAGEANRPDSCAAA
Ga0307416_1025414361	3300032002	Rhizosphere	CGQRTACLANSLFGWIQMKVLGGRLSDSGSRSGHICDGPKATRVIARGNATNSTGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCAFCNDSDLCNDDADLADRPDS
Ga0307414_110626941	3300032004	Rhizosphere	LGGRLSDSGLLSGHISDQTKATRVASRGSGTNCTKFGNPAAQQAAHANVQQAPTQFRASGVGNSVRS
Ga0307411_105096082	3300032005	Rhizosphere	IAVACGQHGACLANSFFGRIQMKVLGGRLSDSGLRSGHICDGPKATRMIDRGNAMNCMGLASPVAQHAAHADRQQSPTQFRSEAGGIPAAFHRACCNDADPADRSDSSAAAWNAT
Ga0307415_1001775862	3300032126	Rhizosphere	MKVLGGRLSDSGSRSGHICDGPKATRVIARGNATNSTGLGNPVAQQAAHADKQQSPVQFRSEAGGIPACFHCAFCNDSDLCNDDADLADRPDS
Ga0307470_100943321	3300032174	Hardwood Forest Soil	LGWFQTKYFGGRLSDSGSRSGDICDGANATRVIDRGNRTNATGLGRPAAQQAAHANKQQPPVQLRSEAGGVPACFH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087453

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences