Metagenome / Metatranscriptome Family F087450

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087450
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	48 residues
Representative Sequence	TGFIQMAIGAAAAQLGGHVIAHAPDAMPMLLLMLLFGVATAVAVWTLVRR
Number of Associated Samples	95
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	88.18 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.636 % of family members)
Environment Ontology (ENVO)	Unclassified (25.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.13% β-sheet: 0.00% Coil/Unstructured: 44.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02738	MoCoBD_1	40.91
PF11752	DUF3309	24.55
PF12826	HHH_2	10.00
PF00533	BRCT	6.36
PF09084	NMT1	4.55
PF13493	DUF4118	2.73
PF13379	NMT1_2	0.91
PF08327	AHSA1	0.91
PF03466	LysR_substrate	0.91
PF02789	Peptidase_M17_N	0.91
PF01613	Flavin_Reduct	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	4.55
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	4.55
COG0260	Leucyl aminopeptidase	Amino acid transport and metabolism [E]	0.91
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.36 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.64 %
Unclassified	root	N/A	26.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	25.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.64 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.64 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Aurantimonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.64 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
Martelella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Martelella	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	23.64 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.82 %
Martelella mediterranea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Martelella → Martelella mediterranea	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101454186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	606	Open in IMG/M
3300002245\|JGIcombinedJ26739_100058662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3521	Open in IMG/M
3300004152\|Ga0062386_100781000	Not Available	786	Open in IMG/M
3300004479\|Ga0062595_102421951	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005181\|Ga0066678_10458236	Not Available	847	Open in IMG/M
3300005332\|Ga0066388_102672820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300005332\|Ga0066388_103576680	Not Available	793	Open in IMG/M
3300005332\|Ga0066388_104519910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	708	Open in IMG/M
3300005332\|Ga0066388_104817448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300005332\|Ga0066388_104874217	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005332\|Ga0066388_106081382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300005340\|Ga0070689_100034535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3858	Open in IMG/M
3300005434\|Ga0070709_10048548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2649	Open in IMG/M
3300005439\|Ga0070711_100352116	All Organisms → cellular organisms → Bacteria → Proteobacteria	1184	Open in IMG/M
3300005455\|Ga0070663_100050747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2952	Open in IMG/M
3300005466\|Ga0070685_11528888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	515	Open in IMG/M
3300005536\|Ga0070697_101116312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300005539\|Ga0068853_100864454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	868	Open in IMG/M
3300005713\|Ga0066905_100747841	Not Available	843	Open in IMG/M
3300005764\|Ga0066903_102325076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1036	Open in IMG/M
3300005764\|Ga0066903_103108931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300005764\|Ga0066903_103205527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	885	Open in IMG/M
3300005764\|Ga0066903_106728730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300006028\|Ga0070717_11313523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300006048\|Ga0075363_100643632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300006178\|Ga0075367_10068093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2135	Open in IMG/M
3300006604\|Ga0074060_11910473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300006854\|Ga0075425_100168226	Not Available	2516	Open in IMG/M
3300006854\|Ga0075425_102471366	Not Available	575	Open in IMG/M
3300006880\|Ga0075429_101544068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	577	Open in IMG/M
3300007076\|Ga0075435_100269955	Not Available	1451	Open in IMG/M
3300009038\|Ga0099829_10611332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	906	Open in IMG/M
3300009038\|Ga0099829_10873754	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300009090\|Ga0099827_10373310	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300009147\|Ga0114129_10820473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1185	Open in IMG/M
3300009162\|Ga0075423_11986327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300010361\|Ga0126378_10936978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	972	Open in IMG/M
3300010373\|Ga0134128_10197895	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300012096\|Ga0137389_11817831	Not Available	505	Open in IMG/M
3300012204\|Ga0137374_10861395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300012209\|Ga0137379_11026726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	730	Open in IMG/M
3300012211\|Ga0137377_10504243	Not Available	1148	Open in IMG/M
3300012212\|Ga0150985_100715524	All Organisms → cellular organisms → Bacteria → Proteobacteria	1994	Open in IMG/M
3300012355\|Ga0137369_10438931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300012358\|Ga0137368_10999815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300012905\|Ga0157296_10417219	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012922\|Ga0137394_10712387	Not Available	844	Open in IMG/M
3300012923\|Ga0137359_10893215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	766	Open in IMG/M
3300012924\|Ga0137413_11428473	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300012951\|Ga0164300_10238348	All Organisms → cellular organisms → Bacteria → Proteobacteria	916	Open in IMG/M
3300012957\|Ga0164303_11153558	Not Available	563	Open in IMG/M
3300012984\|Ga0164309_11077982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300012987\|Ga0164307_10117484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1698	Open in IMG/M
3300012989\|Ga0164305_10110231	Not Available	1788	Open in IMG/M
3300013297\|Ga0157378_10850122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300015356\|Ga0134073_10246290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	615	Open in IMG/M
3300015372\|Ga0132256_103187434	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300016341\|Ga0182035_10609990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	944	Open in IMG/M
3300016387\|Ga0182040_11929156	Not Available	507	Open in IMG/M
3300016422\|Ga0182039_11813256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300018469\|Ga0190270_10413290	All Organisms → cellular organisms → Bacteria → Proteobacteria	1254	Open in IMG/M
3300019887\|Ga0193729_1267083	All Organisms → cellular organisms → Bacteria → Proteobacteria	529	Open in IMG/M
3300020581\|Ga0210399_11277372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300020583\|Ga0210401_11231365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Martelella → Martelella mediterranea	607	Open in IMG/M
3300021168\|Ga0210406_10186059	Not Available	1728	Open in IMG/M
3300021401\|Ga0210393_11612143	Not Available	514	Open in IMG/M
3300021560\|Ga0126371_13290043	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300021560\|Ga0126371_13502170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300025903\|Ga0207680_10039077	All Organisms → cellular organisms → Bacteria	2751	Open in IMG/M
3300025909\|Ga0207705_11083013	Not Available	618	Open in IMG/M
3300025922\|Ga0207646_11623240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300025981\|Ga0207640_11507673	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300027381\|Ga0208983_1021553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1258	Open in IMG/M
3300027576\|Ga0209003_1005615	Not Available	1722	Open in IMG/M
3300027643\|Ga0209076_1193886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300027684\|Ga0209626_1205517	Not Available	522	Open in IMG/M
3300027738\|Ga0208989_10004659	All Organisms → cellular organisms → Bacteria → Proteobacteria	4598	Open in IMG/M
3300028536\|Ga0137415_10078494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3161	Open in IMG/M
3300028708\|Ga0307295_10116766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	727	Open in IMG/M
3300028712\|Ga0307285_10092464	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300028717\|Ga0307298_10180199	Not Available	619	Open in IMG/M
3300028721\|Ga0307315_10201851	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300031549\|Ga0318571_10016867	Not Available	1849	Open in IMG/M
3300031668\|Ga0318542_10126176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1256	Open in IMG/M
3300031681\|Ga0318572_10730258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	589	Open in IMG/M
3300031682\|Ga0318560_10666905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300031682\|Ga0318560_10709860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300031723\|Ga0318493_10052033	Not Available	1940	Open in IMG/M
3300031736\|Ga0318501_10055740	Not Available	1864	Open in IMG/M
3300031736\|Ga0318501_10323625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	826	Open in IMG/M
3300031744\|Ga0306918_10307601	Not Available	1222	Open in IMG/M
3300031748\|Ga0318492_10145602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1192	Open in IMG/M
3300031748\|Ga0318492_10239474	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300031765\|Ga0318554_10018722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3585	Open in IMG/M
3300031769\|Ga0318526_10477303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031778\|Ga0318498_10151198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1056	Open in IMG/M
3300031835\|Ga0318517_10225364	Not Available	845	Open in IMG/M
3300031897\|Ga0318520_10898467	Not Available	558	Open in IMG/M
3300031910\|Ga0306923_10543933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1309	Open in IMG/M
3300031940\|Ga0310901_10223229	All Organisms → cellular organisms → Bacteria → Proteobacteria	761	Open in IMG/M
3300031959\|Ga0318530_10036247	Not Available	1796	Open in IMG/M
3300031959\|Ga0318530_10082865	Not Available	1256	Open in IMG/M
3300032008\|Ga0318562_10049873	Not Available	2294	Open in IMG/M
3300032010\|Ga0318569_10037473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2051	Open in IMG/M
3300032041\|Ga0318549_10255677	Not Available	789	Open in IMG/M
3300032051\|Ga0318532_10121789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300032055\|Ga0318575_10213085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	971	Open in IMG/M
3300032076\|Ga0306924_10939983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	953	Open in IMG/M
3300032205\|Ga0307472_100463868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1081	Open in IMG/M
3300033551\|Ga0247830_10346442	All Organisms → cellular organisms → Bacteria → Proteobacteria	1147	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.45%
Host-Associated	Host-Associated	14.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.55%
Plants	Host-Associated → Plants	14.55%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.73%
Roots	Host-Associated → Plants → Roots	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.64%
Loam	Environmental → Terrestrial → Soil → Loam	20.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1014541861	3300000364	Soil	QMAIGAVAAQFGGHVVAQATDAIPLLLLMLGFGVATGVAVFALVRK*
JGIcombinedJ26739_1000586621	3300002245	Forest Soil	ASGMTGFIQMLIGAAGAQLSGHVLAGASTAMPMLLLMLVFGMATGGAAFTLITRHPTPR*
Ga0062386_1007810002	3300004152	Bog Forest Soil	QMLIGAAGAQLSGHVLAGASTAMPMLLLMLLFGIATGGAAFTLITRFPAPRLN*
Ga0062595_1024219511	3300004479	Soil	AAQLSGHAIAGAADAMPMLLLMLLFGFATAAAFLALVRRRA*
Ga0066678_104582362	3300005181	Soil	IQMAIAAAAAQLGGHVTAHASDAMPMLLLMLTFGVATAVAVWTLVRR*
Ga0066388_1026728201	3300005332	Tropical Forest Soil	VTGFIQMAIGAAAAQLGGQVVAHAAGGMPMLLLMLAFGIATAIAVFTLVRR*
Ga0066388_1035766802	3300005332	Tropical Forest Soil	TGFIQMAIGAIAAQLGGDVIAHAADATPMLLLMLFFGIATATAVFSLVRR*
Ga0066388_1045199102	3300005332	Tropical Forest Soil	GTASGATGFIQMAIGAAAAQLGGHVIAHAPDAMPMLLLMLMFGVATAVAVFSLVRR*
Ga0066388_1048174481	3300005332	Tropical Forest Soil	AAQLGGHVVVQATDAVPMLVLMLAFGVATGVAVFALVRH*
Ga0066388_1048742172	3300005332	Tropical Forest Soil	VGAAAAQLGGHVTAHASDGMPMLLLMLSFGIATGVAVFTLVSRTRSS*
Ga0066388_1060813821	3300005332	Tropical Forest Soil	MAIGAAAAQLGGHVVAHAAGGMPMLLLMLAFGIATAVAVFTLVRR*
Ga0070689_1000345354	3300005340	Switchgrass Rhizosphere	IGAAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR*
Ga0070709_100485481	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	TASGLTGFIQMSVGALAAQLGGHVVAQAASATPMLLLILFFGIALAVAFFALVRR*
Ga0070711_1003521161	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GFIQMLIGAAGAQLSGHVLAGASTAMPLLLLMLVFGMATGGAAFTLITRHPAPR*
Ga0070663_1000507471	3300005455	Corn Rhizosphere	FVQMAIGAAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR*
Ga0070685_115288881	3300005466	Switchgrass Rhizosphere	AAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR*
Ga0070697_1011163122	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IQMSVGALAAQLGGHVVAQAASATPMLLLMLFFGIALAAAFFALVRR*
Ga0068853_1008644543	3300005539	Corn Rhizosphere	GFVQMAIGAAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR*
Ga0066905_1007478411	3300005713	Tropical Forest Soil	AAAQLGGHVVAHAAGGMPMLLLMLAFGIATAIAVFTLVRR*
Ga0066903_1023250761	3300005764	Tropical Forest Soil	SGLTGFIQMAIGGAAAQLGGYVVAQATDAVPMLVLMLGFGVATGVAVFALVRR*
Ga0066903_1031089311	3300005764	Tropical Forest Soil	QMSIGAVAAQLGGYVVAQAAGATPMLLLMLFFGIATAAAVFTLVRR*
Ga0066903_1032055271	3300005764	Tropical Forest Soil	ATAAQLGGYVVAGASDATPMLLLILGFGVATAGAVFTLVTRRPPARSQA*
Ga0066903_1067287301	3300005764	Tropical Forest Soil	RPQVAGTASGMTGFIQMAICAGAAQLSGYLVARASNAIPMLLLILIFGLATATAAAVLVRGRWRNS*
Ga0070717_113135232	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GHVTAHASDAMPMLLLMLTFGVATAVAVWTLVRR*
Ga0075363_1006436323	3300006048	Populus Endosphere	GLVIAHATGAMPLLLLMLAFGVATGLAVFSLVRR*
Ga0075367_100680933	3300006178	Populus Endosphere	AAQLGGLVIAHATGAMPLLLLMLAFGVATGLAVFSLVRR*
Ga0074060_119104731	3300006604	Soil	AAAQLGGHVTAHAPDAMPMLLLMLMFGVATAVAVWTLVRR*
Ga0075425_1001682261	3300006854	Populus Rhizosphere	ASGLTGFIQMSVGALAAQLGGHVVAQAASATPMLLLILFFGIALAVAFFALVRR*
Ga0075425_1024713661	3300006854	Populus Rhizosphere	ASGLTGFIQMSVGALAAQLGGHVVAQAASATPMLLLMLFFGIALAAAFFALVRRPA*
Ga0075429_1015440682	3300006880	Populus Rhizosphere	VTGFVQMGIAAVAAQLGGHVIAHAADALPMLLLMLIFGAATAIAVFTLVRR*
Ga0075435_1002699551	3300007076	Populus Rhizosphere	GAVAAQLGGYVVAQAAGATPMLLLMLFFGIATAAAVFTLVRR*
Ga0099829_106113323	3300009038	Vadose Zone Soil	QMAIGAGAAQLSGHVIAGASDAMPMLLLMLGFGIATAAAVFVLVRRR*
Ga0099829_108737542	3300009038	Vadose Zone Soil	MTGFIQMAIGAGAAQLSGHVIGHASDAMPMLLLMLVFGVATAIAVFTLVRWR*
Ga0099827_103733102	3300009090	Vadose Zone Soil	QLSGHAIAGASDAMPMLLLMLLFGFATAAAFLALVRRRS*
Ga0114129_108204731	3300009147	Populus Rhizosphere	TGFIQMGIAAVAAQLGGHVISHAADALPMLLLMLIFGIATAAAVFALVRR*
Ga0075423_119863271	3300009162	Populus Rhizosphere	GATGFIQMAIGAVAAQLGGHVVAHAADAMPMLLLMLFFGIATATAVFTLVRR*
Ga0126378_109369782	3300010361	Tropical Forest Soil	TGFIQMAIGAAAAQLGGHVIAHAPDAMPMLLLMLLFGVATAVAVWTLVRR*
Ga0134128_101978953	3300010373	Terrestrial Soil	ASGLTGFIQMSVGALAAQLGGHVVAQAASATPMLLLMLFFGIALAAAFFALVRR*
Ga0137389_118178313	3300012096	Vadose Zone Soil	GMTGFIQMVIGAGAAQLSGYLIAGASNAMPMLLLMLLFGVATAAAVFALVVRR*
Ga0137374_108613951	3300012204	Vadose Zone Soil	VAGTASGVTGFVQMGIAAVAAQLGGHVISHAADALPMLLLMLMFGVATAAAVFTLVRR*
Ga0137379_110267261	3300012209	Vadose Zone Soil	KVAAIAAQLGGHVISQATDALPMLLLMLIFGVATAAAVFTLVRR*
Ga0137377_105042431	3300012211	Vadose Zone Soil	AAAAQLGGHVTSHAPDAMPMLLLMLTFGVATAVAVWTLVRR*
Ga0150985_1007155243	3300012212	Avena Fatua Rhizosphere	GMAGFIQMAIGACAAQLSAHVIAGASSAMPMLLLMLAFAVATAGAVYILVR*
Ga0137369_104389312	3300012355	Vadose Zone Soil	AAAAQLGGHVIAHASDAMPMLLLMLMFGIATAIAVWTLVRR*
Ga0137368_109998152	3300012358	Vadose Zone Soil	VTGFVQMGIAAVAAQLGGHVIAHAADALPMLLLMLMFGVATAAAVFTLVRR*
Ga0157296_104172191	3300012905	Soil	SGLTGFIQMAIGAAAAQLGGLAVAHATDAVPLLLLMLAFGVATAVAVFTLVRR*
Ga0137394_107123871	3300012922	Vadose Zone Soil	GTASGTTGFIQMAIAAAAAQLGGHVIAHASDAMPMLLLMLGFGIATAIAVFTLVRR*
Ga0137359_108932152	3300012923	Vadose Zone Soil	GVTGFIHMAIGAAAAQLGGQVVAHAAGGTPMLLLMLAFGIATAIAVFSLVRR*
Ga0137413_114284731	3300012924	Vadose Zone Soil	AAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAAFSLVRR*
Ga0164300_102383481	3300012951	Soil	GFFQMLIGAAGAQLSGHVLAGASTAMPLLLLMLVFGIATGGAAFTLITRHPAPR*
Ga0164303_111535582	3300012957	Soil	AAAAQLGGLAVDHATDAVPLLLLMLAFGVATAVAVFTLVRR*
Ga0164309_110779821	3300012984	Soil	SGTTGFIQMAIGAAAAQLGGLATAHAPDAMPMLLLMLMFGVATAVAVWTLVRR*
Ga0164307_101174841	3300012987	Soil	GAAAAQLGGLAVAHATDAVPLLLLMLAFGVATAVAVFTLVRR*
Ga0164305_101102312	3300012989	Soil	SVGALAAQLGGHVVAQAASATPMLLLMLFFGIALAAAFFALVRR*
Ga0157378_108501221	3300013297	Miscanthus Rhizosphere	QLGGLAVAHATDAVPLLLLMLAFGVATAVAVFTLVRR*
Ga0134073_102462901	3300015356	Grasslands Soil	LGGQVVAHAAGATPMLLLMLAFGIATAIAVFSLVRR*
Ga0132256_1031874342	3300015372	Arabidopsis Rhizosphere	MTGFIQMAIGAAAAQLGGLVVAHASGALPMLVLMLAFGVATAIAVFVLVRR*
Ga0182035_106099901	3300016341	Soil	AQLGGHVIAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0182040_119291561	3300016387	Soil	PQVAGTASGMTGFIQMAICAGAAQLSGYLVARSSNAIPMLLLILMFGLATATAAAVLVRRRWRTL
Ga0182039_118132562	3300016422	Soil	GAIAAQLGGDVIAHAADATPMLLLMLFFGIATATAVFSLVRR
Ga0190270_104132901	3300018469	Soil	AQLGGLVIAHATSAMPLLLLMLAFGIATAVAVFSLVRR
Ga0193729_12670831	3300019887	Soil	SIRPQVAGTASGMTGFIQMLIGAAGAQLSGHVLAGASTAMPMLLLMLVFGIATGGAVFTLITRHPAPR
Ga0210399_112773722	3300020581	Soil	TTGFIQMAIGAAAAQLGGLATAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0210401_112313651	3300020583	Soil	SGMTGFIQMLIGAAGAQLSGHVLAGASTAMPLLLLMLVFGMATGGAAFTLITRHPAPR
Ga0210406_101860592	3300021168	Soil	ASGTTGFIQMAIGAAAAQLGGLATAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0210393_116121432	3300021401	Soil	ASGMTGFFQMLIGAAGAQLSGHVLAGASTAMPMLLLMLLFGIATGGAAFTLITRFPAPR
Ga0126371_132900433	3300021560	Tropical Forest Soil	AAAAQLGGLIVAHATGAMPLILLMLLFGLATAAAFLVLVRR
Ga0126371_135021701	3300021560	Tropical Forest Soil	GATGFIQMAIGAAAAQLGGHVIAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0207680_100390774	3300025903	Switchgrass Rhizosphere	MAIGATAAQLGGLVIAHATGAMPLLLLMLAFGVATGLAVFSLVRR
Ga0207705_110830131	3300025909	Corn Rhizosphere	MAIGAAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR
Ga0207646_116232402	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	AAQLGGHVTAHASDAMPMLLLMLTFGVATAVAVWTLVRR
Ga0207640_115076733	3300025981	Corn Rhizosphere	QLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR
Ga0208983_10215533	3300027381	Forest Soil	LGGHIVAHASNALPMMLLMLAFGVATAVAVFTLVRR
Ga0209003_10056151	3300027576	Forest Soil	AAQLGGHATAHASDAVPMLLLMLMFGVATAIAVWTLVRR
Ga0209076_11938862	3300027643	Vadose Zone Soil	QLGGHVTAHASDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0209626_12055171	3300027684	Forest Soil	TASGMTGFIQMLIGAAGAQLSGHVLAGASTAMPMLLLMLVFGIATGGAVFTLITRHPAPR
Ga0208989_100046591	3300027738	Forest Soil	IGAAAAQLGGHIVAHASNALPMMLLMLAFGVATAVAVFTLVRR
Ga0137415_100784944	3300028536	Vadose Zone Soil	TGFIQMAIDAAAAQLGGHVTAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0307295_101167663	3300028708	Soil	AAAAQLGGHIVAHASNALPMMLLMLAFGVATAVAVFALVRR
Ga0307285_100924641	3300028712	Soil	IGAAAAQLGGLVIAHATSAMPLLLLMLAFGIATAVAVFSLVRR
Ga0307298_101801991	3300028717	Soil	AAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR
Ga0307315_102018511	3300028721	Soil	AAAQLGGLVIAHATGAMPLLLLMLAFGVATGLAVFSLVRR
Ga0318571_100168672	3300031549	Soil	AAAAQLGGNVIAHAQDAMPMLLLMLTFGVATAVAVWTLVRR
Ga0318542_101261762	3300031668	Soil	SGVTGFIQMAIGAIAAQLGGDVIAHAADATPMLLLMLFFGIATATAVFSLVRR
Ga0318572_107302582	3300031681	Soil	AIGAAAAQLGGYVTAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318560_106669051	3300031682	Soil	DGAAAAQLGGYVTAHAPDAMPMLLLILMFGVATAVAVWTLVRR
Ga0318560_107098602	3300031682	Soil	GGYVTAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318493_100520332	3300031723	Soil	LGGYVTAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318501_100557401	3300031736	Soil	FVQMAIGAAAAQLGGYATAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318501_103236252	3300031736	Soil	GTASGMTGFIQMTIGAIAAQLSGQIIAGASNAMPMLMLMLFFGCATAAAVFALVRRQQTSMA
Ga0306918_103076012	3300031744	Soil	ASGATGFVQMAIGAAAAQLGGYATAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318492_101456021	3300031748	Soil	SGMTGFIQMTICAGAAQLAGHLVARASDAIPMLLLILLFGIATATAAAVLVTRR
Ga0318492_102394741	3300031748	Soil	GAIAAQLSGQIIAGASNAMPMLLLMLFFGCATAAAVFALVRRQQTSMA
Ga0318554_100187225	3300031765	Soil	AGTASGMTGFIQMTIGAIAAQLSGQIIAGASNAMPMLLLMLFFGCATAAAVFALVRRQQTSMA
Ga0318526_104773031	3300031769	Soil	LGGLVTAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318498_101511982	3300031778	Soil	ASGATGFIQMAIAAAAAQLGGNVIAHAPDAMPMLLLMLMFGIATAIAVWTLVRR
Ga0318517_102253641	3300031835	Soil	QLGGYATAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318520_108984671	3300031897	Soil	TASGMTGFIQMTIGAVAAQLGGHVVGHAPDAMPMLWLMLFFGIATGVAVFSLVRR
Ga0306923_105439333	3300031910	Soil	GMTGFIQMGVGATAAQLGGHVVAGASSAAPMLLVMLGFGVATAVAVFALVTRHSPASGRI
Ga0310901_102232291	3300031940	Soil	FVQMAIGAAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR
Ga0318530_100362471	3300031959	Soil	AVAAQLGGHVIAHAPDAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318530_100828651	3300031959	Soil	AAQLGGDVIAHAADATPMLLLMLFFGIATATAVFSLVRR
Ga0318562_100498732	3300032008	Soil	IQMVIGAAAAQLGGYVTAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318569_100374731	3300032010	Soil	QVAGTASGVTGFIQMAIGAIAAQLGGDVIAHAADATPMLLLMLFFGIATATAVFSLVRR
Ga0318549_102556771	3300032041	Soil	TGFIQMAIGAIAAQLGGDVIAHAADATPMLLLMLFFGIATATAVFSLVRR
Ga0318532_101217891	3300032051	Soil	LGGYATAHASGAMPMLLLMLMFGVATAVAVWTLVRR
Ga0318575_102130851	3300032055	Soil	AGTASGMTGFIQMAICAGAAQLSGYLVARASNAIPMLLLILIFGLATATAAAVLVRGRWRNS
Ga0306924_109399831	3300032076	Soil	GTASGMTGFIQMGVGATAAQLGGHVVAGASSAAPMLLVMLGFGVATAVAVFALVTRHSPASGRI
Ga0307472_1004638681	3300032205	Hardwood Forest Soil	AGTASGATGFIQMATGAAAAQVSGHIVGSASSATPMLLLMLLFGIATGVAVFALVWRNRGGVEL
Ga0247830_103464423	3300033551	Soil	TGFVQMAIGAAAAQLGGLVIAHATGAMPLLLLMLAFGVATGVAVFSLVRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087450

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences