Metagenome / Metatranscriptome Family F087424

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087424
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	48 residues
Representative Sequence	VDVFDPVAYAASLLVIVTSCALAVSVPALRAARIDPIATLRKD
Number of Associated Samples	90
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.67 %
% of genes near scaffold ends (potentially truncated)	84.55 %
% of genes from short scaffolds (< 2000 bps)	88.18 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (16.364 % of family members)
Environment Ontology (ENVO)	Unclassified (25.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 52.11% β-sheet: 0.00% Coil/Unstructured: 47.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13460	NAD_binding_10	10.00
PF12704	MacB_PCD	4.55
PF12833	HTH_18	4.55
PF03551	PadR	2.73
PF07676	PD40	2.73
PF02687	FtsX	2.73
PF03786	UxuA	1.82
PF00679	EFG_C	1.82
PF01161	PBP	1.82
PF13419	HAD_2	1.82
PF12706	Lactamase_B_2	1.82
PF09084	NMT1	1.82
PF04020	Phage_holin_4_2	0.91
PF02894	GFO_IDH_MocA_C	0.91
PF04545	Sigma70_r4	0.91
PF08241	Methyltransf_11	0.91
PF01252	Peptidase_A8	0.91
PF13632	Glyco_trans_2_3	0.91
PF12681	Glyoxalase_2	0.91
PF03764	EFG_IV	0.91
PF01381	HTH_3	0.91
PF00109	ketoacyl-synt	0.91
PF13551	HTH_29	0.91
PF00144	Beta-lactamase	0.91
PF07969	Amidohydro_3	0.91
PF00528	BPD_transp_1	0.91
PF08327	AHSA1	0.91
PF02371	Transposase_20	0.91
PF05685	Uma2	0.91
PF11138	DUF2911	0.91
PF00174	Oxidored_molyb	0.91
PF00293	NUDIX	0.91
PF13432	TPR_16	0.91
PF07617	DUF1579	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.73
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.73
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.73
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.82
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	1.82
COG1312	D-mannonate dehydratase	Carbohydrate transport and metabolism [G]	1.82
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.82
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.91
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.91
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.91
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.91
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.91
COG0480	Translation elongation factor EF-G, a GTPase	Translation, ribosomal structure and biogenesis [J]	0.91
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.55 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3.64 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.91 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.91 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	3.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.91 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002070\|JGI24750J21931_1045189	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	677	Open in IMG/M
3300002073\|JGI24745J21846_1008520	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300002124\|C687J26631_10000662	All Organisms → cellular organisms → Bacteria	14140	Open in IMG/M
3300004156\|Ga0062589_101091528	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300004156\|Ga0062589_101321069	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300004463\|Ga0063356_101431617	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300004463\|Ga0063356_104779318	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300004463\|Ga0063356_105240460	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300004463\|Ga0063356_105726322	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	533	Open in IMG/M
3300004480\|Ga0062592_100581350	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300005290\|Ga0065712_10749044	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005294\|Ga0065705_10816628	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005328\|Ga0070676_11610710	Not Available	502	Open in IMG/M
3300005347\|Ga0070668_101443379	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300005354\|Ga0070675_100304139	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300005364\|Ga0070673_102321139	Not Available	510	Open in IMG/M
3300005456\|Ga0070678_101449998	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300005549\|Ga0070704_100586693	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300005577\|Ga0068857_100449924	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300005578\|Ga0068854_101896871	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005615\|Ga0070702_100151100	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300005713\|Ga0066905_101631045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	591	Open in IMG/M
3300005719\|Ga0068861_101599584	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006194\|Ga0075427_10036781	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300006358\|Ga0068871_102171649	Not Available	529	Open in IMG/M
3300006579\|Ga0074054_11881840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	831	Open in IMG/M
3300006755\|Ga0079222_12486966	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300006844\|Ga0075428_100429811	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300006846\|Ga0075430_100971564	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300006852\|Ga0075433_11050662	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300006852\|Ga0075433_11299760	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300006894\|Ga0079215_10631907	Not Available	706	Open in IMG/M
3300006914\|Ga0075436_101051303	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300007004\|Ga0079218_13808335	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300009038\|Ga0099829_11756462	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300009078\|Ga0105106_10691021	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	729	Open in IMG/M
3300009078\|Ga0105106_11375525	Not Available	501	Open in IMG/M
3300009094\|Ga0111539_10075669	All Organisms → cellular organisms → Bacteria	3965	Open in IMG/M
3300009094\|Ga0111539_10269787	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300009094\|Ga0111539_11514920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300009094\|Ga0111539_11729375	Not Available	725	Open in IMG/M
3300009146\|Ga0105091_10460825	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	640	Open in IMG/M
3300009147\|Ga0114129_10983883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1063	Open in IMG/M
3300009147\|Ga0114129_11634662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300009148\|Ga0105243_12597156	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300009156\|Ga0111538_14134447	Not Available	501	Open in IMG/M
3300009162\|Ga0075423_12563802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300009553\|Ga0105249_10649285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1113	Open in IMG/M
3300010329\|Ga0134111_10222724	Not Available	768	Open in IMG/M
3300010362\|Ga0126377_13167761	Not Available	531	Open in IMG/M
3300010398\|Ga0126383_10820279	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300011119\|Ga0105246_10102344	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300012204\|Ga0137374_10159124	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300012499\|Ga0157350_1010839	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300012915\|Ga0157302_10311618	Not Available	615	Open in IMG/M
3300013308\|Ga0157375_10240469	All Organisms → cellular organisms → Bacteria	1970	Open in IMG/M
3300014154\|Ga0134075_10415217	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300014326\|Ga0157380_13244690	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300015201\|Ga0173478_10686901	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300015256\|Ga0180073_1111033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300018053\|Ga0184626_10354549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300018063\|Ga0184637_10531912	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300018429\|Ga0190272_11520555	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300018429\|Ga0190272_11789157	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300018429\|Ga0190272_12096675	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300018432\|Ga0190275_10961330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300018469\|Ga0190270_11023099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300018469\|Ga0190270_11157128	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300019377\|Ga0190264_10669011	Not Available	759	Open in IMG/M
3300021080\|Ga0210382_10017398	All Organisms → cellular organisms → Bacteria	2551	Open in IMG/M
3300025919\|Ga0207657_10214497	Not Available	1543	Open in IMG/M
3300025926\|Ga0207659_11493541	Not Available	578	Open in IMG/M
3300025930\|Ga0207701_11538388	Not Available	537	Open in IMG/M
3300025937\|Ga0207669_10382596	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300025938\|Ga0207704_10928013	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300026067\|Ga0207678_11459367	Not Available	604	Open in IMG/M
3300026075\|Ga0207708_10091108	All Organisms → cellular organisms → Bacteria	2351	Open in IMG/M
3300026118\|Ga0207675_100008079	All Organisms → cellular organisms → Bacteria	9913	Open in IMG/M
3300026320\|Ga0209131_1369724	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300027717\|Ga0209998_10044497	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300027979\|Ga0209705_10078894	All Organisms → cellular organisms → Bacteria → Acidobacteria	1803	Open in IMG/M
3300028809\|Ga0247824_11013915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	526	Open in IMG/M
3300028812\|Ga0247825_10264198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1198	Open in IMG/M
3300031229\|Ga0299913_11316719	Not Available	679	Open in IMG/M
3300031547\|Ga0310887_11023983	Not Available	527	Open in IMG/M
3300031562\|Ga0310886_10114503	All Organisms → cellular organisms → Bacteria	1366	Open in IMG/M
3300031740\|Ga0307468_102235490	Not Available	530	Open in IMG/M
3300031908\|Ga0310900_10905789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300031940\|Ga0310901_10208895	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300031943\|Ga0310885_10699322	Not Available	569	Open in IMG/M
3300031944\|Ga0310884_10021452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2612	Open in IMG/M
3300032002\|Ga0307416_103883681	Not Available	500	Open in IMG/M
3300032003\|Ga0310897_10249412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	794	Open in IMG/M
3300032017\|Ga0310899_10061107	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300032017\|Ga0310899_10118335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1094	Open in IMG/M
3300032075\|Ga0310890_10645930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	823	Open in IMG/M
3300032075\|Ga0310890_11548339	Not Available	547	Open in IMG/M
3300032122\|Ga0310895_10132914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300032122\|Ga0310895_10782895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300032144\|Ga0315910_10135372	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300032179\|Ga0310889_10167918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	994	Open in IMG/M
3300032179\|Ga0310889_10206207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	911	Open in IMG/M
3300032179\|Ga0310889_10215919	Not Available	893	Open in IMG/M
3300033416\|Ga0316622_100428328	Not Available	1493	Open in IMG/M
3300034147\|Ga0364925_0365168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	545	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.27%
Host-Associated	Host-Associated	42.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.09%
Plants	Host-Associated → Plants	42.73%
Aquatic	Environmental → Aquatic	8.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.64%
Freshwater	Environmental → Aquatic → Freshwater	5.45%
Sediment	Environmental → Aquatic → Sediment	2.73%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.55%
Loam	Environmental → Terrestrial → Soil → Loam	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Ice	Environmental → Aquatic → Freshwater → Ice	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	16.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	16.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015256	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT333_16_10D	Environmental	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24750J21931_10451892	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	IVLRATPLAAEIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
JGI24745J21846_10085201	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	VLRATPLAAEIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
C687J26631_100006622	3300002124	Soil	VAYAASALVIATACLIAMSVPILRAASVDPIATLRKD*
Ga0062589_1010915282	3300004156	Soil	SVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0062589_1013210692	3300004156	Soil	LMASPFASEIGDVVHVFDPLAYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0063356_1002577511	3300004463	Arabidopsis Thaliana Rhizosphere	AGTGLAAAVATLLLSTPAASEIGSLVHVLDPVAYITGVLVIASACLLASSLPMLRAARIDPIAALRNE*
Ga0063356_1014316172	3300004463	Arabidopsis Thaliana Rhizosphere	AIVLMATPVAAEIGSLVNVFDPVAYTASLLCIGTACVLAASIPALRAARIDPIATLRQD*
Ga0063356_1047793182	3300004463	Arabidopsis Thaliana Rhizosphere	DPVAYAASALVIVASCMLAVSVPALRAARIDPIVTLRMD*
Ga0063356_1052404601	3300004463	Arabidopsis Thaliana Rhizosphere	DPLAYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0063356_1057263222	3300004463	Arabidopsis Thaliana Rhizosphere	SPFASEIGDAVHVFDPLAYFASVLVIAAACLLGVSVPALRAARIDPIAALRKD*
Ga0062592_1005813502	3300004480	Soil	DVFDPAAYAASALVIATACLIAVSVPTLRAARIDPIATLRKD*
Ga0065712_107490441	3300005290	Miscanthus Rhizosphere	VLDPAAYGVSVITIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0065705_108166283	3300005294	Switchgrass Rhizosphere	AASEIGGVVKVFDPVAYAASLLVIITSCALAVSVPALRAARIDPIAMLRKD*
Ga0070676_116107101	3300005328	Miscanthus Rhizosphere	DVFDPVAYAGSLLVIVTSCALAVSVPALRATRIDPIATLKKE*
Ga0070668_1014433791	3300005347	Switchgrass Rhizosphere	VDVFDPVAYAASLLVIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0070675_1003041391	3300005354	Miscanthus Rhizosphere	VQVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD*
Ga0070673_1023211391	3300005364	Switchgrass Rhizosphere	VAIVLMATPAASETGGVIDVFDPVAYAASALVIATACLIAVSVPTLRATRIDPIATLRKD
Ga0070678_1014499982	3300005456	Miscanthus Rhizosphere	GASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0070704_1005866932	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	IGDWVHVLDPVAYGTSALTIVMSSALAVSVPALRAARIDPIATLRKD*
Ga0068857_1004499243	3300005577	Corn Rhizosphere	PVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0068854_1018968712	3300005578	Corn Rhizosphere	PGASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0070702_1001511004	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	DPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0066905_1016310452	3300005713	Tropical Forest Soil	ALDDSGEVGRMIHVLDPIPYVASALIIAMACLLATSIPTLRAARIDPIATLRKD*
Ga0068861_1015995842	3300005719	Switchgrass Rhizosphere	AGAGLAAALAILLLTLPGASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0075427_100367811	3300006194	Populus Rhizosphere	YATSALVIVTACLLAALVPTWRAVRIDPIATLRQQ*
Ga0068871_1021716491	3300006358	Miscanthus Rhizosphere	AILLAAVDSGIGGIVDVFDPVAYLASVLVIVTSCAVAVLVPALRASRIDPIATLRKD*
Ga0074054_118818402	3300006579	Soil	IASVLLIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0079222_124869662	3300006755	Agricultural Soil	VLTATATELQGWMHVLDPVAYIASVLLIATSCVVAVSVPALRAVRIDPIATLGKD*
Ga0075428_1004298111	3300006844	Populus Rhizosphere	TVNVLDPLAYVSSTLVIVTACLIAVSVPTLRAVRVDPITTLRKE*
Ga0075430_1009715643	3300006846	Populus Rhizosphere	VKVFDPVAYAASLLVIITSCALAVSVPALRAARIDPIAMLRKD*
Ga0075431_1005698101	3300006847	Populus Rhizosphere	AVATLLLSTPAASEIGSLVHVLDPVAYITGVLVIASACLLASSLPMLRAARIDPIAALRNE*
Ga0075433_110506622	3300006852	Populus Rhizosphere	AYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0075433_112997601	3300006852	Populus Rhizosphere	AYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0079215_106319071	3300006894	Agricultural Soil	AAGVLVIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0075436_1010513032	3300006914	Populus Rhizosphere	AAGAGLAAALSILLLALPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0079218_138083351	3300007004	Agricultural Soil	GLAAGGGLAAAVAIVLTATPLAAEIGDLDVLDPVAYGASVLLIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0099829_117564622	3300009038	Vadose Zone Soil	DIVHVFDPVAYAASILVIVTSCVLAVSVPALRAARIDPIATLRQD*
Ga0105106_106910212	3300009078	Freshwater Sediment	VAYAASLLVIVTSCVLAVSVPALRAARIDPIATLRRD*
Ga0105106_113755251	3300009078	Freshwater Sediment	VAYAAGLLVIVTSCALAVSVPALRAARIDPIATLRRD*
Ga0111539_100756691	3300009094	Populus Rhizosphere	VLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0111539_102697873	3300009094	Populus Rhizosphere	AVATMLMAVSDGEVGTMIKVFDPTAYTTSVLVIVVSCALAATVPALRAARIDPIATLRRE
Ga0111539_115149202	3300009094	Populus Rhizosphere	AAALAILLLTLPGAAEIADWVHVLDPAAYGAGIVTILLSCALAVSIPALRAARIDPIATLRKD*
Ga0111539_117293751	3300009094	Populus Rhizosphere	AGLAAALSILLLALPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPARRAARIDPIATLRKD*
Ga0105091_104608252	3300009146	Freshwater Sediment	VAYAASLLVIVTSCALAVSVPALRAARIDPMVTLRKD*
Ga0114129_109838833	3300009147	Populus Rhizosphere	DPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0114129_116346621	3300009147	Populus Rhizosphere	VAYAASLLIIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0105243_125971561	3300009148	Miscanthus Rhizosphere	GSELGAWVDVFDPVAYATSLLLIVAASMIATVFPALRAASLDPIATLRID*
Ga0111538_141344472	3300009156	Populus Rhizosphere	EIGDIVHVFDPLAYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0075423_111661072	3300009162	Populus Rhizosphere	GIVLIAIPGASSPLSQIVHVFDPVAYAASLICIVAACALAALIPAMRAAGIAPVDALRQD
Ga0075423_125638022	3300009162	Populus Rhizosphere	PAAYVTCVLVIASACLLAASLPTLRAARIDPIAALRNE*
Ga0105249_106492851	3300009553	Switchgrass Rhizosphere	VAYAGSVLVIVTSCALAASVPAWRAARIDPITTLRRD*
Ga0134111_102227241	3300010329	Grasslands Soil	SASLLVIVTSCALAVSVPALRAACIDPIATLKKD*
Ga0126377_131677612	3300010362	Tropical Forest Soil	LAAGGGLAIAVAIVLTATATELRGWMHLLDPVAYIACVLVIVTSCVLAVSVPALRVARIDPIATLRKD*
Ga0126383_108202791	3300010398	Tropical Forest Soil	MYSIFDPVAYAASLLVIVTSCGLAVWIPSLRAARIDPFETLRKD*
Ga0105246_101023445	3300011119	Miscanthus Rhizosphere	VFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0137374_101591243	3300012204	Vadose Zone Soil	VAYSASLLVIVTSCALAVSVPALRAACIDPIATLKKD*
Ga0157350_10108391	3300012499	Unplanted Soil	EIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0157302_103116182	3300012915	Soil	LPGASEIGDWVHVLDPAAYGVSVITIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0157375_102404693	3300013308	Miscanthus Rhizosphere	PVAYGTSALTIVMSSALAVSVPALRAARIDPIATLRKD*
Ga0134075_104152172	3300014154	Grasslands Soil	VAYSASLLVIVTSCALAVSVPALRAACIDPIATLRKD*
Ga0157380_132446901	3300014326	Switchgrass Rhizosphere	DPSAYATSLLVIVVSCTLAAAVPALRAARIDPIATLRRE*
Ga0173478_106869012	3300015201	Soil	VWVDVFDPVAYAASLLVIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0180073_11110331	3300015256	Soil	IPDMVQVFDPVAYAASLLVIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0180121_101224581	3300017695	Polar Desert Sand	ATVLMAIPAASQIRDIVHIFDPVAYAATLLCIVMACALAALIPALRAARIDPIATLRQD
Ga0184626_103545491	3300018053	Groundwater Sediment	GDIVRVFDPLAYTVSLLCIVTACALAASIPALRAARIDPIATLRQD
Ga0184637_105319121	3300018063	Groundwater Sediment	VLMATPAASEIGNLVHVFDPVAYAASLLVIVTACVLAASVPALRAARIDPIATLRKD
Ga0190272_115205552	3300018429	Soil	SEIGDLKVLDPLAYGASVLVIVTSCVLAVSVPALRAARIDPIATLRQD
Ga0190272_117891572	3300018429	Soil	PAASQIGAVVRVFDPVAYAASLLLVVTTCTLAASIPAWRAALIDPIATLRND
Ga0190272_120966752	3300018429	Soil	GGIVHVFDPVAYAASLACIVTACVFAGFIPALRAARIDPMKTLRQE
Ga0190275_109613301	3300018432	Soil	AGGVIAAALAIVLMTTPVAAEIGDSVRVFDPVAYLASLLVIVTSCALAVSVPALRASRIDPIATLRKD
Ga0190270_110230991	3300018469	Soil	PIAAEIGGSVNVFDPVAYAAGLLVIVSSCVVAVSVPTWRAARIDPIATLRKD
Ga0190270_111571281	3300018469	Soil	LDPVAYASGLLVIVTSCALAVSVPALRAARIDPIATLRQD
Ga0190264_106690111	3300019377	Soil	AASQIGSVVHVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0210382_100173983	3300021080	Groundwater Sediment	VAYSASLLVIVTSCALAVSVPALRAACIDPIATLKKD
Ga0207657_102144974	3300025919	Corn Rhizosphere	LLLTLPGASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0207659_114935412	3300025926	Miscanthus Rhizosphere	VFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0207701_115383882	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ASEIGNLVQVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0207669_103825963	3300025937	Miscanthus Rhizosphere	DGSEIHGWVDVFDPVAYATSLLVIVTASICATLVPALRAACIDPIATLRQD
Ga0207704_109280132	3300025938	Miscanthus Rhizosphere	AEMGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD
Ga0207678_114593671	3300026067	Corn Rhizosphere	PVAYSASALVIATACLIAVSVPTLRATRIDPIATLRKD
Ga0207708_100911085	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VAIVLRATPLAAEMGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD
Ga0207675_10000807915	3300026118	Switchgrass Rhizosphere	IVLRATPLAAEIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD
Ga0209131_13697242	3300026320	Grasslands Soil	YAASLLVIVTSCALAVSVPALRAACIDPIATLRKD
Ga0209998_100444972	3300027717	Arabidopsis Thaliana Rhizosphere	MATPAASEIGNVVHVFDPVAYLASALIIAAASLLGVAVPALRAARIDLIATLRRD
Ga0209382_113772493	3300027909	Populus Rhizosphere	PAASAIGDIVRVFDPVAYALSGLVVVTACALAAWVPALRACRLDPVATLRQD
Ga0209705_100788942	3300027979	Freshwater Sediment	VAYAASLLVIVTSCVLAVSVPALRAARIDPIATLRRD
Ga0247824_110139152	3300028809	Soil	YWCAHGGVIDVFDPVAYAASALIIATACLIAVSVPTLRAARIDPIATLRKD
Ga0247825_102641982	3300028812	Soil	MATPAAAEIGAVVDIFDPVAYAASALVIATASLIAVSVPTVRATRIDPIEILRKD
Ga0299913_113167191	3300031229	Soil	AASLFGGALIHVYDPVAYTGSLLVIVTACALAAAIPTWRAARIDPIATLRQD
Ga0310887_110239832	3300031547	Soil	AGIGSIVHVFDPMAYTASLLVIVTSCLLAVSVPALRAVRIDPIATLRKE
Ga0310886_101145033	3300031562	Soil	ALAVVLTSAAAEIGSIVHVFDPMAYTASLLVIVTSCLLAVSVPALRAVRIDPIATLRKE
Ga0307468_1022354902	3300031740	Hardwood Forest Soil	VAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0310900_109057892	3300031908	Soil	LAAAVAIVLMTTPIAAEMGDSIDVLDPGAYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0310901_102088951	3300031940	Soil	GDVINVFDPVAYAASALVIATACLIAVSVPTLRAARIDPIATLRKD
Ga0310885_106993221	3300031943	Soil	LMATPMASEIGNLVQVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0310884_100214522	3300031944	Soil	DSIDVLDPGAYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0307416_1038836812	3300032002	Rhizosphere	YLASALIIAAASLLGVAVPALRAARIDPIATLRRD
Ga0310897_102494121	3300032003	Soil	TPVAAEIGSLVNVFDPVAYTASLLCIGTACVLAASIPALRAARIDPIATLRQD
Ga0310899_100611071	3300032017	Soil	VHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0310899_101183352	3300032017	Soil	AYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0310890_106459301	3300032075	Soil	PLAYAASALVIATASLIAVSVPTLRAARIEPIAILRKD
Ga0310890_115483391	3300032075	Soil	VAAIVLMSTSLASEIGGVVDVFDPVAYAASLAVIVMSCAIAVSVPALRAARIDPIATLRR
Ga0310895_101329141	3300032122	Soil	IVLMTTPIAVEIGDSIDVLDPGAYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0310895_107828952	3300032122	Soil	SLVNVFDPVAYTASLLCIGTACVLAASIPALRAARIDPIATLRQD
Ga0315910_101353723	3300032144	Soil	EVGMLITVFDPTAYATSLLVIVVSCTLAAAVPALRAARIDPIATLRRE
Ga0310889_101679181	3300032179	Soil	LSILLLALPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0310889_102062071	3300032179	Soil	TPASAEIAAVVDVFDPVAYAASALVIATASLIAVSVPTLRAARIDPIAILRKD
Ga0310889_102159191	3300032179	Soil	LPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0316622_1004283281	3300033416	Soil	PVAYAASLLVIIMACVLAALVPGLRAARIDSMVALRQE
Ga0364925_0365168_429_542	3300034147	Sediment	VAYAASALVIATASLIAVSVPTVRAARIDPIAILRKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087424

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences