Metagenome / Metatranscriptome Family F087411

Overview

Basic Information

• Family ID: F087411
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 65 residues
• Representative Sequence: RTKTYVTQEATRLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE
• Number of Associated Samples: 100
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 95.45 %
• % of genes from short scaffolds (< 2000 bps): 88.18 %
• Associated GOLD sequencing projects: 94
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (80.909 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.727 % of family members)
• Environment Ontology (ENVO): Unclassified (27.273 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (46.364 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 39.56%
  β-sheet: 0.00%
  Coil/Unstructured: 60.44%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13420	Acetyltransf_4	34.55
PF01980	TrmO	5.45
PF06418	CTP_synth_N	2.73
PF00300	His_Phos_1	2.73
PF07676	PD40	1.82
PF00593	TonB_dep_Rec	0.91
PF02770	Acyl-CoA_dh_M	0.91
PF00916	Sulfate_transp	0.91
PF13679	Methyltransf_32	0.91
PF13709	DUF4159	0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	5.45
COG0504	CTP synthase (UTP-ammonia lyase)	Nucleotide transport and metabolism [F]	2.73
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.91
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.91
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.91
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.91
COG1545	Uncharacterized OB-fold protein, contains Zn-ribbon domain	General function prediction only [R]	0.91
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.91
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.91
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.91

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.64 %
Unclassified	root	N/A	16.36 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.64 %
Unclassified	root	N/A	16.36 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	2.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.91 %
Unclassified	root	N/A	16.36 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	18.18 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.73 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	2.73 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	20.91 %
Unclassified	root	N/A	16.36 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.91 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.73 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	0.91 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	20.00 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.82 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	2.73 %
Unclassified	root	N/A	16.36 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.45 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.73 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	2.73 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	14.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.73 %
Unclassified	root	N/A	16.36 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	0.91 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.73 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.73 %
Unclassified	root	N/A	16.36 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.91 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	2.73 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	14.55 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.91 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	0.91 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2.73 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2.73 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	14.55 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.73 %
Unclassified	root	N/A	16.36 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001431|F14TB_104830742	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	582
3300002122|C687J26623_10192225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	565
3300003324|soilH2_10104424	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2218
3300004114|Ga0062593_103196368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525
3300004463|Ga0063356_100038910	All Organisms → cellular organisms → Bacteria	4678
3300005328|Ga0070676_11052806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613
3300005338|Ga0068868_100755921	Not Available	874
3300005356|Ga0070674_100257620	All Organisms → cellular organisms → Bacteria	1373
3300005356|Ga0070674_100566835	All Organisms → cellular organisms → Bacteria	955
3300005364|Ga0070673_101815948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.91%
Environmental	Environmental	68.18%
Host-Associated	Host-Associated	30.91%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.00%
Plants	Host-Associated → Plants	30.91%
Terrestrial	Environmental → Terrestrial	58.18%
Wastewater	Engineered → Wastewater	0.91%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.91%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Freshwater	Environmental → Aquatic → Freshwater	6.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.36%
Roots	Host-Associated → Plants → Roots	1.82%
Sediment	Environmental → Aquatic → Sediment	3.64%
Soil	Environmental → Terrestrial → Soil	57.27%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.18%
Ice	Environmental → Aquatic → Freshwater → Ice	0.91%
Lake	Environmental → Aquatic → Freshwater → Lake	2.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.27%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.91%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.91%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.82%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.55%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.91%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental
3300003324	Sugarcane bulk soil Sample H2	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1048307421	3300001431	Soil	PGRGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLQQQFTAD*
C687J26623_101922251	3300002122	Soil	LRMKTYVTQEATKLCAELFALSGGRHYRRNGRLARTLAASFAGTALRPPLALALDTLVQQFSSE*
soilH2_101044241	3300003324	Sugarcane Root And Bulk Soil	RVLRTKTHVTAEATKLCAELFSLAGGRHYRRSSEVARFLADSFAGTALRPPLPLALETLAEKFTLDGDWR*
Ga0062593_1031963682	3300004114	Soil	YVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0063356_1000389101	3300004463	Arabidopsis Thaliana Rhizosphere	LALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAGAFAGTALRPPLPLALETLLQQFTAD*
Ga0070676_110528062	3300005328	Miscanthus Rhizosphere	LALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0068868_1007559213	3300005338	Miscanthus Rhizosphere	YVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070674_1002576201	3300005356	Miscanthus Rhizosphere	PDYAARSLRTKTYVTQEATRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0070674_1005668351	3300005356	Miscanthus Rhizosphere	QYAARVLRTKTYVTQEATKLCAELFALGGGRNYRRTSRAARTLADSFAGTSLRPPLALALDSLLENFTLFDS*
Ga0070673_1018159482	3300005364	Switchgrass Rhizosphere	GAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070659_1011753462	3300005366	Corn Rhizosphere	LRTKTYVTQETTRLCAELFALSGGRHYKRDGRLARALTASFAGTALRPPLPLALDALVQQFGAE*
Ga0070701_102887961	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD*
Ga0070678_1012493032	3300005456	Miscanthus Rhizosphere	TKTYVTQETTRLCAELFALSGGRHYKRDGRLARALTASFAGTALRPPLPLALDALVQQFGAE*
Ga0070685_101763411	3300005466	Switchgrass Rhizosphere	RTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070741_105642302	3300005529	Surface Soil	VLRTKTYVTQEATKLCAELFALGGGRNYRRTSPVARLLADSFAGTSLRPPLALALDLLVQNFTLGDIEHDLAAG*
Ga0070741_112449931	3300005529	Surface Soil	GAEYGARVLRAKTYVTQESTRLCAELFALSGGRHYTRGGRLARLLADSFAGTALRPPLALGLDTLVEQFSLGPLA*
Ga0070697_1001067001	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	YVTQESTRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSAE*
Ga0070686_1005651691	3300005544	Switchgrass Rhizosphere	VTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070695_1016195991	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GAGPDYAARSLRTKTYVTQEATRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0070704_1006807581	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	TQEATRLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0066707_109358942	3300005556	Soil	KLCAELFALSGGRHYTRSGALARALADSFAGTALRPPLALALDTLTEQFQL*
Ga0068854_1005839011	3300005578	Corn Rhizosphere	AGPAYAALALRTKTYVTQEATGLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD*
Ga0070702_1001372861	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RTKTYVTQEATRLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0075422_103212301	3300006196	Populus Rhizosphere	LALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAGAFAGTALRPPLPLGLETLLQQFTAD*
Ga0097621_1019648502	3300006237	Miscanthus Rhizosphere	GAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD*
Ga0075433_100809895	3300006852	Populus Rhizosphere	KTYVTQESTRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDILVQQFSAE*
Ga0075425_1013974882	3300006854	Populus Rhizosphere	PAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0075434_1017747172	3300006871	Populus Rhizosphere	STRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSAE*
Ga0079217_108419632	3300006876	Agricultural Soil	CAELFALGGGRNYRRTSLVARMLADSFAGTALRPPLALALDRLIENFSLGDAESHLTVNGSS*
Ga0075426_113232522	3300006903	Populus Rhizosphere	LCAELFALGGGRNYRRTSPVARLLADSFAGTSLRPPLALALDLLVQNFTLGGIEDDPAAGSN*
Ga0079218_100875832	3300007004	Agricultural Soil	PAAGPRYAARVLRAKTYVTQEAAKLCAELFALGGGRSYRRTSRVARTLADSFAGAALRPPLTLALDSLVENFTLGSAEE*
Ga0079218_125779401	3300007004	Agricultural Soil	LRTKTYVSQEATKLCAELFALGGGRHYRRNDRVARTLADSFAGTALRPPLALALENLVENFSLGGAE*
Ga0066710_1038771001	3300009012	Grasslands Soil	QEATRLCGELFALSGGRHYTRDGRLARTLAASFAGTALRPPLPLALDTLLQQFSAE
Ga0105107_101195831	3300009087	Freshwater Sediment	RAKTYVTQEATKLCAELFALGGGRNYRRSNRIARTLADSFAGTALRPPLALALDMLVENFSLGAAEE*
Ga0079224_1038981772	3300009095	Agricultural Soil	VTQEATRLCAELFALSGGRHYRRTSSVARLLADSFAGTALRPPLPLALDSLVEQFALD*
Ga0066709_1013939553	3300009137	Grasslands Soil	ARALRTKTYVTQEATRLCGELFALSGGRHYTRDGRLARTLAASFAGTALRPPLPLALDTLLQQFSA*
Ga0105243_102383923	3300009148	Miscanthus Rhizosphere	YAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLASSFAGTALRPPLPLALDTLVQQFSEE*
Ga0111538_109862862	3300009156	Populus Rhizosphere	LCAELFALSGGRNYRRTSAVARALADSFAGTSLRPPLALALDGLVESFSLGEAAAP*
Ga0075423_103120791	3300009162	Populus Rhizosphere	GAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0105241_118347381	3300009174	Corn Rhizosphere	YAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0126307_109093651	3300009789	Serpentine Soil	EATKLSAELFALGGGRHYTRTGALSRALAASFAGTALRPPLPLALDTLVQSFTLGELAT*
Ga0131077_105488013	3300009873	Wastewater	RVLRTKTFVSQESVRLCADLFALSGGRHYVRGGKLSGLMADVFAGTALRPPLALALDMLVDQFEIG*
Ga0126312_109723172	3300010041	Serpentine Soil	YVTQEATKLSAELFALSGGRHYTRTGAVARALAASFAGTALRPPLPLALDTLVQNFSLGELGT*
Ga0126312_112270221	3300010041	Serpentine Soil	MKTYVTQEATKLCAELFALSGGRHYSRNSAVARAFADAFAGTALRPPLALGLETLTEQFELT*
Ga0126377_128431472	3300010362	Tropical Forest Soil	YAALALRTKTYVTQEATALCAQLFALSGGRHYRRDGRLARALAASFAGTALRPPLPLALDTLVQQFSAD*
Ga0126377_136114842	3300010362	Tropical Forest Soil	TYVTQESTRLCAELFALSGGRHYKRDGRLARLLAASFAGTALRPPLPLALDALIQQFPVHSA*
Ga0134126_116067811	3300010396	Terrestrial Soil	SQEATKLCAELFALGGGRSYTRTHRVARALADSFAGTALRPPLPLALDALVQSFSLGALAE*
Ga0126383_106579401	3300010398	Tropical Forest Soil	ISAELFALSGGRHYTRASAVARAFADAFAGTALRPPLPLALDTICEQFATDDLTDV*
Ga0126356_114127351	3300010877	Boreal Forest Soil	EATRLCGELFALSGGRHYARTSGIARALADSFAGTALRPPLPLAIDTLTEAFTVDALDEV
Ga0137369_110684832	3300012355	Vadose Zone Soil	AGPVYAARALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFAAE*
Ga0157355_10379051	3300012493	Unplanted Soil	GPAYAALALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD*
Ga0137397_106430342	3300012685	Vadose Zone Soil	VLRTKTYVTQEATRLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0164302_118308582	3300012961	Soil	TKLCAELFALSGGRHYTRSGALARALADSFAGTALRPPLALALDTLTEQFQL*
Ga0153916_110411971	3300012964	Freshwater Wetlands	AELFALGGGRNYRRSSAVARALADSFAGTALRPPLAPALDTLMESFELDVIETAGR*
Ga0120111_11143691	3300013764	Permafrost	EYAARVLRTKTYVTQEATKLAAELFALGGGRHYTRTGRLARTLADSFAGTALRPPLALALDSLVQNFSLGPLAIE*
Ga0120172_10176863	3300013765	Permafrost	TKLAAELFALGGGRHYTRTGRLARTLADSFAGTALRPPLALALDSLVQNFTLGPLAIE*
Ga0075331_10582981	3300014310	Natural And Restored Wetlands	DPRSMTMRVIRTKTYVTQESTKLCAELFALSGGRHFSRTSPVARALADSFTGTALRPPLALALDMLVENFAV*
Ga0180083_11053592	3300014875	Soil	GPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE*
Ga0163144_100796738	3300015360	Freshwater Microbial Mat	RVLRTKTYVTQESTKLCAELFALGGGRHYRRSGVVARTVADAFAGTALRPPLPLALEMLAENFSLGPLNDFSD*
Ga0132258_103338561	3300015371	Arabidopsis Rhizosphere	AYAALVLRTKTYVTQEATRLCAELFALGGGRHYTRNGRLARTLAGAFAGTALRPPLPLALETLLQQFTAD*
Ga0132256_1007371401	3300015372	Arabidopsis Rhizosphere	TQEATKLCAELFALGGGRNYRRTSPVARLLADSFAGTSLRPPLALALDLLVQNFTLGDLDNEGAAS*
Ga0132255_1001812412	3300015374	Arabidopsis Rhizosphere	LFALGGGRNYRRTSPVARLLADSFAGTSLRPPLALALDLLVQNFTLGDLDNDGAAS*
Ga0132255_1029198392	3300015374	Arabidopsis Rhizosphere	VVRAKTHVTQESTRLCADLFALSGGRHYRRTSPAARLLAASFAGTALRPPLPLALDALVENFSLADQHE*
Ga0132255_1056584942	3300015374	Arabidopsis Rhizosphere	AAGPAYAARVLRTKTHVSSESTKLCAELFALGGGRQYRRNGTAARFLADSFAGTALRPPLMLALDTLVEHFEQPEL*
Ga0182739_12538061	3300017655	Soil	KTYVSQEATKLCADLFALGGGRHYRRNDIAARLLADSFAGTALRPPLALGLDGLLAQFED
Ga0180121_103400201	3300017695	Polar Desert Sand	AGQVLRTKTYVSQEATKLAAELFALSGGRHYRRDGKLARTLADSFAGTALRPPLPLALEALIEA
Ga0190266_101263152	3300017965	Soil	VLRTKTYVTQEATKLCAELFALSGGRHYSRGSAVARTFADAFAGTALRPPLALGLETLVEQFSLE
Ga0190266_102947311	3300017965	Soil	VTQEATKLCAELFALGGGRNYRRTSLVARMLADSFAGTSLRPPLALALDRLVESFSLGEA
Ga0184626_104342711	3300018053	Groundwater Sediment	TQEATKLCAELFALSGGRHYKRDGRLARTLASSFAGTALRPPLPLALDTLVQQFSEE
Ga0184611_10537164	3300018067	Groundwater Sediment	RVLRAKTYVAQEATKLCAELFALGGGRNYRRTSRAARTLADSFAGTSLRPPLALALDSLIENFTLFDS
Ga0190265_127171352	3300018422	Soil	GSGAEYAALVLRTKTYVSQEATKLCAELFALGGGRNYRRNNFVARTLADSFAGTALRPPLTLALESLVENFSLGNAAAW
Ga0190272_115678942	3300018429	Soil	AELFALSGGRHYSRSSPVARAFADAFAGTALRPPLALGLETLVEQFNLEISSDEFRSAAG
Ga0190275_108842413	3300018432	Soil	SAEATKLCAELFAVSGGRHYRRGGPAARLLADAFAGTALRPPLALALDGLVEQFEA
Ga0190275_134797841	3300018432	Soil	THVTQEATRICADLFALSGGRHYTRSGRLSRTLADAFAGTALRPPLPLALDMLVDGFSLGDLDDSARGEEQPTYIVGA
Ga0066662_119848151	3300018468	Grasslands Soil	RDLAMRVLRTKTYVTQESTKLCAELFALSGGRHYTRSGVLARALADSFAGTALRPPLALALDTLTEQFQL
Ga0190271_102182884	3300018481	Soil	RTKTYVTQEATKLCAELFSLGGGRNYRRTSLVARMLADSFAGTSLRPPLNLARDRLIESFSLGDAE
Ga0193744_10100063	3300019874	Soil	KTYVTQEATKLCAELFALSGGRHYTRDGRLARLLASSFAGTALRPPLALALETLVQQFS
Ga0194131_101001373	3300020193	Freshwater Lake	VLRTNTYVTQDATKLAAELFALSGGRHYRRTSPVARLLADSFAGTALRPPLSLALDTLVEQFGSD
Ga0210381_103951451	3300021078	Groundwater Sediment	KTYVTQEAIKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLVQQFSS
Ga0193706_10064526	3300021339	Soil	YAARVLRTKTYVTQEATKLCAELFSLGGGRNYRHTSLVARMLADSFAGTFLRPPLTLALDRLVESFSIGDAE
Ga0207688_101272121	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	PAYAARALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207645_110941581	3300025907	Miscanthus Rhizosphere	ATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSD
Ga0207707_105169291	3300025912	Corn Rhizosphere	AYAARVLRMKTYVTQESTRLCAELFALAGGRHYRRTSRVAKLLADAFAGTALRPPLSLALETLSESFALE
Ga0207646_104726741	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	PAYAARVLRTKTYVTQESTRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSAE
Ga0207669_109314992	3300025937	Miscanthus Rhizosphere	PAAGPQYAARVLRTKTYVTQEATKLCAELFALGGGRNYRRTSRAARTLADSFAGTSLRPPLALALDSLLENFTLFDS
Ga0207677_110897972	3300026023	Miscanthus Rhizosphere	YVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207639_113607761	3300026041	Corn Rhizosphere	YVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207676_111510621	3300026095	Switchgrass Rhizosphere	RTKTYLTQEATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSD
Ga0207676_125814002	3300026095	Switchgrass Rhizosphere	RTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207674_105548081	3300026116	Corn Rhizosphere	PGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0209438_100121812	3300026285	Grasslands Soil	YAARVLRTKTYVTQEATRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE
Ga0208320_10387372	3300027362	Soil	LRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE
Ga0209486_108592191	3300027886	Agricultural Soil	TKTYVSQEATKLCAELFALGGGRHYRRNDRVARTLADSFAGTALRPPLALALENLVENFSLGGAE
Ga0209415_105757072	3300027905	Peatlands Soil	IAADLFALSGGRHYTRTGHVARSLAGVFAGTALRPPLPLALDMLVDGFSLGPAEP
Ga0247825_111480102	3300028812	Soil	KLCAELYALGGGRHYTRTGRLARALAASFAGTALRPPLPLALDTLVLHFGETDDEWSTAG
Ga0307296_106835732	3300028819	Soil	AARALRTKTYVTQEATRLCAELFALSGGRHYTRDGRLARTLAASFAGTALRPPLPLALDTLLQQFSAE
Ga0307511_104540151	3300030521	Ectomycorrhiza	ARVLRTKTFVAQEATRLCADLFALSGGRHYVRGGRLSSAMADVFAGTALRPPLALALDALAEGFAFE
Ga0310887_111354952	3300031547	Soil	VTQEATKLCAELFALGGGRNYRRTGRVARIFADSFAGTSLRPPLALALDSLLDNFPDNVTPGGIE
Ga0307468_1024937912	3300031740	Hardwood Forest Soil	TKTFVTQEATRLCAELFALSGGRHYKRDSRLARALAASFAGTALRPPLPLALETLVQQFTPD
Ga0307410_115949311	3300031852	Rhizosphere	RTKTYVTQEATRLCAELYALGGGRHYTRTGRLARALSASFAGTALRPPLPLALDILVQQFGEIDDRWSAAGA
Ga0310904_104782581	3300031854	Soil	EATGLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD
Ga0310900_100389311	3300031908	Soil	ATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD
Ga0326597_120888421	3300031965	Soil	SHVSSEATKLCAELFALSGGRHYRRGDQAARLLADSFAGTALRPPLALALDGLVGQFDA
Ga0310890_113572302	3300032075	Soil	AARMLRTKTYLTQEATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSD
Ga0315912_112433272	3300032157	Soil	KLCAELFALGGGRNYRRTSVVARMLADSFAGTALRPPLALALDRLVENFSLGDAE
Ga0307471_1007188733	3300032180	Hardwood Forest Soil	LRTKTYVAQEATHLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLPLALETMVQQFDG
Ga0307472_1005041113	3300032205	Hardwood Forest Soil	VTQEATRLCAELFALSGGRHYTRSGRLARTLAASFAGTALRPPLPLALETLLQQFAAD
Ga0334722_102511752	3300033233	Sediment	VLRTKTYVSQESTKLCAELFALSGGGHYRASDPLARLLADSFAGTSLRPPLPLALDMLSQELVIPDLDKLRTS
Ga0316622_1005058911	3300033416	Soil	AARVLRTKTHVTQEAAKLCAELFALSGGRHYRRTSAVARGLADAFAGTALRPPLPLGLDTLVEQFSLGDLDG
Ga0364943_0307450_3_203	3300034354	Sediment	RALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE