Metagenome Family F087410

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087410
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	88 residues
Representative Sequence	KRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Number of Associated Samples	94
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.88 %
% of genes near scaffold ends (potentially truncated)	91.82 %
% of genes from short scaffolds (< 2000 bps)	87.27 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (20.909 % of family members)
Environment Ontology (ENVO)	Unclassified (23.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 56.31% Coil/Unstructured: 43.69%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00866	Ring_hydroxyl_B	5.45
PF03401	TctC	5.45
PF11295	DUF3096	3.64
PF03972	MmgE_PrpD	3.64
PF07690	MFS_1	2.73
PF14559	TPR_19	1.82
PF00672	HAMP	1.82
PF01425	Amidase	1.82
PF13343	SBP_bac_6	0.91
PF03330	DPBB_1	0.91
PF07883	Cupin_2	0.91
PF13400	Tad	0.91
PF00848	Ring_hydroxyl_A	0.91
PF16822	ALGX	0.91
PF01979	Amidohydro_1	0.91
PF13432	TPR_16	0.91
PF05193	Peptidase_M16_C	0.91
PF00190	Cupin_1	0.91
PF00072	Response_reg	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	5.45
COG5517	3-phenylpropionate/cinnamic acid dioxygenase, small subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.45
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	3.64
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.82
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.64 %
Unclassified	root	N/A	6.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	78.18 %
Unclassified	root	N/A	6.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	75.45 %
Unclassified	root	N/A	6.36 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	75.45 %
Unclassified	root	N/A	6.36 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	74.55 %
Unclassified	root	N/A	6.36 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	74.55 %
Unclassified	root	N/A	6.36 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	74.55 %
Unclassified	root	N/A	6.36 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	74.55 %
Unclassified	root	N/A	6.36 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111006\|2214769104	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	804	Open in IMG/M
3300000891\|JGI10214J12806_13147693	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1351	Open in IMG/M
3300003987\|Ga0055471_10250665	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300004013\|Ga0055465_10368623	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	503	Open in IMG/M
3300004463\|Ga0063356_105612070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300004480\|Ga0062592_102368434	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300004480\|Ga0062592_102479167	Not Available	521	Open in IMG/M
3300005186\|Ga0066676_11065875	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300005294\|Ga0065705_10670616	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	635	Open in IMG/M
3300005330\|Ga0070690_101696420	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	513	Open in IMG/M
3300005331\|Ga0070670_102161009	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	513	Open in IMG/M
3300005332\|Ga0066388_102622201	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	918	Open in IMG/M
3300005365\|Ga0070688_101167471	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	618	Open in IMG/M
3300005445\|Ga0070708_101419438	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	647	Open in IMG/M
3300005451\|Ga0066681_10384149	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	863	Open in IMG/M
3300005457\|Ga0070662_100360884	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1192	Open in IMG/M
3300005466\|Ga0070685_11561229	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	510	Open in IMG/M
3300005540\|Ga0066697_10124818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1511	Open in IMG/M
3300005540\|Ga0066697_10801387	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	512	Open in IMG/M
3300005559\|Ga0066700_10791204	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005617\|Ga0068859_101988732	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	642	Open in IMG/M
3300005713\|Ga0066905_102109374	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300005764\|Ga0066903_103013769	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	912	Open in IMG/M
3300005841\|Ga0068863_100889462	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	890	Open in IMG/M
3300005873\|Ga0075287_1000111	All Organisms → cellular organisms → Bacteria	9059	Open in IMG/M
3300005879\|Ga0075295_1004804	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1222	Open in IMG/M
3300005887\|Ga0075292_1038385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	673	Open in IMG/M
3300006049\|Ga0075417_10197886	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300006049\|Ga0075417_10352109	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	722	Open in IMG/M
3300006196\|Ga0075422_10341260	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	651	Open in IMG/M
3300006844\|Ga0075428_102535666	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300006847\|Ga0075431_100137452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	2520	Open in IMG/M
3300006847\|Ga0075431_100833367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	894	Open in IMG/M
3300006852\|Ga0075433_10159257	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300006854\|Ga0075425_101685589	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	713	Open in IMG/M
3300006854\|Ga0075425_101756873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	697	Open in IMG/M
3300006903\|Ga0075426_10376516	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300006904\|Ga0075424_101372023	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	751	Open in IMG/M
3300006904\|Ga0075424_102885233	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300006914\|Ga0075436_100102065	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300006969\|Ga0075419_11096790	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	583	Open in IMG/M
3300007004\|Ga0079218_10075910	All Organisms → cellular organisms → Bacteria	2210	Open in IMG/M
3300007004\|Ga0079218_12138794	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	647	Open in IMG/M
3300007004\|Ga0079218_13333952	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	544	Open in IMG/M
3300007076\|Ga0075435_100549271	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1000	Open in IMG/M
3300009012\|Ga0066710_101004687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1288	Open in IMG/M
3300009094\|Ga0111539_12647317	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300009100\|Ga0075418_10279003	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1780	Open in IMG/M
3300009100\|Ga0075418_11045051	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	884	Open in IMG/M
3300009147\|Ga0114129_11056234	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300009148\|Ga0105243_12997004	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	512	Open in IMG/M
3300009162\|Ga0075423_10457423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1341	Open in IMG/M
3300009162\|Ga0075423_11314216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	773	Open in IMG/M
3300009162\|Ga0075423_11736481	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300010358\|Ga0126370_11072822	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	740	Open in IMG/M
3300010361\|Ga0126378_12043058	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	653	Open in IMG/M
3300010362\|Ga0126377_13155757	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300010375\|Ga0105239_11853176	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	699	Open in IMG/M
3300010376\|Ga0126381_101110852	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300010399\|Ga0134127_10465597	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1267	Open in IMG/M
3300010399\|Ga0134127_13649267	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	505	Open in IMG/M
3300010403\|Ga0134123_10121325	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2117	Open in IMG/M
3300011119\|Ga0105246_10250527	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1405	Open in IMG/M
3300011119\|Ga0105246_12200592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	537	Open in IMG/M
3300012355\|Ga0137369_10950696	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	573	Open in IMG/M
3300012489\|Ga0157349_1001012	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1508	Open in IMG/M
3300012502\|Ga0157347_1015305	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	853	Open in IMG/M
3300012906\|Ga0157295_10185259	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	652	Open in IMG/M
3300012922\|Ga0137394_11083259	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300012955\|Ga0164298_10017874	All Organisms → cellular organisms → Bacteria → Proteobacteria	2955	Open in IMG/M
3300012988\|Ga0164306_10112748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1796	Open in IMG/M
3300013100\|Ga0157373_10954479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638	Open in IMG/M
3300013104\|Ga0157370_11835070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	544	Open in IMG/M
3300014254\|Ga0075312_1041927	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	854	Open in IMG/M
3300014270\|Ga0075325_1097311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	690	Open in IMG/M
3300014311\|Ga0075322_1149770	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	573	Open in IMG/M
3300015372\|Ga0132256_101939404	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	696	Open in IMG/M
3300015372\|Ga0132256_102905793	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	576	Open in IMG/M
3300015373\|Ga0132257_101174951	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	970	Open in IMG/M
3300018432\|Ga0190275_11095924	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	870	Open in IMG/M
3300022756\|Ga0222622_10021651	All Organisms → cellular organisms → Bacteria	3285	Open in IMG/M
3300025911\|Ga0207654_10346771	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1021	Open in IMG/M
3300025920\|Ga0207649_10674477	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	800	Open in IMG/M
3300025930\|Ga0207701_10749376	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	825	Open in IMG/M
3300025992\|Ga0208775_1023141	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	501	Open in IMG/M
3300025993\|Ga0208415_1003089	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1503	Open in IMG/M
3300026029\|Ga0208002_1030733	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300027617\|Ga0210002_1032681	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	869	Open in IMG/M
3300027639\|Ga0209387_1144837	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	618	Open in IMG/M
3300027717\|Ga0209998_10066959	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	853	Open in IMG/M
3300027787\|Ga0209074_10044761	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1330	Open in IMG/M
3300027873\|Ga0209814_10271239	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	737	Open in IMG/M
3300027876\|Ga0209974_10039461	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1570	Open in IMG/M
3300028379\|Ga0268266_11146024	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	752	Open in IMG/M
3300030606\|Ga0299906_10039088	All Organisms → cellular organisms → Bacteria	3786	Open in IMG/M
3300030620\|Ga0302046_11322372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300031716\|Ga0310813_10662629	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	929	Open in IMG/M
3300031824\|Ga0307413_10781397	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300031908\|Ga0310900_10830609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	749	Open in IMG/M
3300031911\|Ga0307412_10544200	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300031962\|Ga0307479_11956714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300032174\|Ga0307470_10585455	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300032180\|Ga0307471_104074509	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516	Open in IMG/M
3300033412\|Ga0310810_11201731	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	614	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.36%
Host-Associated	Host-Associated	43.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.73%
Plants	Host-Associated → Plants	43.64%
Aquatic	Environmental → Aquatic	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.18%
Marine	Environmental → Aquatic → Marine	1.82%
Sediment	Environmental → Aquatic → Sediment	1.82%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.18%
Loam	Environmental → Terrestrial → Soil → Loam	6.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.55%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	4.55%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.55%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.64%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012489	Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610	Environmental	Open in IMG/M
3300012502	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610	Host-Associated	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014270	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1	Environmental	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025992	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104 (SPAdes)	Environmental	Open in IMG/M
3300025993	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026029	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213787511	2209111006	Arabidopsis Rhizosphere	HWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTASAALTQITDTVSPLR
JGI10214J12806_131476931	3300000891	Soil	LLEGYYVEIDHLMDMEYRSQLHLTMGLGYRLNEGPVHASGHYTVTKLGVFTATKAAGAALFIR*
Ga0055471_102506651	3300003987	Natural And Restored Wetlands	RFDTPAGMIDGYYIDLDHVMDMPFATLHITLGLGCRLDDGPVYGSGQYTLTKLGIFTETKTVAAGLAKELNRSIIY*
Ga0055465_103686232	3300004013	Natural And Restored Wetlands	SELTAARSVRHQASFKMYDARTGRLKRSGDATHLVKQVLHSRFDTPAGMIDGYYIDLDHVMDMPFATLHITLGLGCRLDDGPVYGSGQYTLTKLGIFTETKTVAAGLAKELNRSIIY*
Ga0063356_1056120701	3300004463	Arabidopsis Thaliana Rhizosphere	LRRSGQATHLVKPISHSQFETPAGRIDGYYIEIEHRMDMEYYSHVLFKIGLGCRLDDGPVYGSAQYTVKKLGLFTETKTAAAGLAAR*
Ga0062592_1023684341	3300004480	Soil	KLKRGGRVTHLLKPPSHSQFDTPAGLINGYYIEIDHLMDMEYRSQLHLTMGLGYRLNEGPVYASGHYTVTKLGVFTATKAAGAALFIR*
Ga0062592_1024791672	3300004480	Soil	YFIEIDHRMDMPLAQLQMSLGLGCRLDEGPVFGSGLYTLTKLGIFSETKTSAAALTTVNGTAPSVR*
Ga0066676_110658751	3300005186	Soil	TGRLKRAGRVTHWVKEVSPSRFDTPAGLIDGYFIEIDHRMDMPYAQLQMTIGLGCRLDDGPVFGSGNYTLTKLGLFTETKTTSAALTQITDTVSPLR*
Ga0065705_106706162	3300005294	Switchgrass Rhizosphere	ETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0070690_1016964202	3300005330	Switchgrass Rhizosphere	HVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0070670_1021610091	3300005331	Switchgrass Rhizosphere	QVTHWVKQVSPSRFDTPAGLIDGYFIEIDHRMDMPYAQLQMKLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTVSAALTLITDSISPLR*
Ga0066388_1026222011	3300005332	Tropical Forest Soil	VKRISRSQFDTPAGLIDGYYIELDHRMDMEYKSQLRLSLGLGFRLDEGPIYGSGQYTVKKLGIFSEIKTAAVALAKR*
Ga0070688_1011674711	3300005365	Switchgrass Rhizosphere	DTPAGLIDGYFIEIDHRMDMPYAQLQMKLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTVSAALTLITDSISPLR*
Ga0070708_1014194381	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTHLVKQISHSQFDTPAGLIDGYYIEIDHRMDMEYNSNLRLTIGLGCGLDEGPVYGSGHYTLTKLGLFTETKTATVGLAKR*
Ga0066681_103841492	3300005451	Soil	IFARDVASGVAVPRQANFKMYDRETGRLKRIGRATHVVRRVSLSQFETPAGLIDGYYLEIDHRMDMQYAQLHMSLGLGCRLDEGPVYGVGRYTLTKLGLFTETKTAAAGLAIR*
Ga0070662_1003608841	3300005457	Corn Rhizosphere	YDLETGRLKRVGRVTHVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0070685_115612291	3300005466	Switchgrass Rhizosphere	GLGVARQANFKMYDLETGRLKRVGRVTHMMKRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0066697_101248181	3300005540	Soil	PIFTRDVASGVAVPRQANFKMYDRETGRLKRIGRATHVVRRVSLSQFETPAGLIDGYYLEIDHRMDMQYAQLHMSLGLGCRLDEGPVYGVGRYTLTKLGLFTETKTAAAGLAIR*
Ga0066697_108013871	3300005540	Soil	ALPIFARDIGSDVSILRQANFKMYDRDTGKLKRTGHASHLVKRVSRSQFETPAGLIDGYYIEIEHRMDMQFAQLHMSLGLGCRLDEGPVYGSGRYTLRKLGLFSETKTAAAALAIR*
Ga0066700_107912041	3300005559	Soil	LVKQVSHSRFDTPAGFIDGYYIEIEHGMDMQFAQLHLTLGLGCRLDDGPVYGSGQYTLRKLGLFSETKATAAGLAIR*
Ga0068859_1019887322	3300005617	Switchgrass Rhizosphere	RSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0066905_1021093742	3300005713	Tropical Forest Soil	RMYNRETGKLKRSGRVIHSVKRISRSQFHTPAGLIDGYYIELDHRMDMEYKSQLRLSLGLGFRLDEGPIYGSGQYTITKLGIFSETKTAAVALAKR*
Ga0066903_1030137691	3300005764	Tropical Forest Soil	LKRSGRVIHSVKRISRSQFDTPAGLIDGYYIELDHRMDMEYKSQLRLSLGLGFRLDEGPVYGSGQYTVNKLGIFSETKTAGAALAKR*
Ga0068863_1008894622	3300005841	Switchgrass Rhizosphere	LGVARQANFKMYDLETGRLKRVGRVTHMMKRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0075287_10001111	3300005873	Rice Paddy Soil	VKQVSPSRFDTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKTAAAALAKVNNTSLHQDP*
Ga0075295_10048041	3300005879	Rice Paddy Soil	EASFKMFDIETGKLKRTGRVMHVVKQVSPSRFDTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKTAAAALAKVNNTSLHQDP*
Ga0075292_10383851	3300005887	Rice Paddy Soil	TPDITSGGTVRRESSFKMFDIETEKLKRTGRVMHVVKQVSPSRFDTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKTAAAALAKVNNTSLHQDP
Ga0075417_101978861	3300006049	Populus Rhizosphere	GRVTHFVKQISHSQFDTPAGLIDGYYIEIDHRMDMEYNSQLHLTLGLGCRLDEGPVYGSGRYTLKKLGLFTETKTAAAGLARR*
Ga0075417_103521091	3300006049	Populus Rhizosphere	DRDTGKLKRTGQASHLVKRVSRSQFETPAGLIDGYYIEIEHRMDMQFAQLHMSLGLGCRLDEGPVYGSGRYTLRKLGIFSETKTAAAALAIRQ*
Ga0075422_103412601	3300006196	Populus Rhizosphere	IQRQASFKMFDLATGRLKRAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLRKLGLFTETKTAAAALTQITDSVSPLR*
Ga0075428_1025356661	3300006844	Populus Rhizosphere	SQFETPAGLIDGYYIEIEHRMDMQFAQLHMSLGLGCRLDEGPVYGSGRYTLRKLGIFSETKTAAAALAIRQ*
Ga0075431_1001374521	3300006847	Populus Rhizosphere	DITSGSAIQRQASFKMFDLATGRLKRAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLRKLGLFTETKTAAAALTQITDSVSPLR*
Ga0075431_1008333671	3300006847	Populus Rhizosphere	AETGRLKRVGRVTHVMKRVSRSRFETPAGPIDGYYVEVDHRMDMQYAQLQMSVGLGCRLDDGPVYGSGRYTLTKLGLFTETKTVAAGLVSR*
Ga0075433_101592574	3300006852	Populus Rhizosphere	SGVGITRQANFKMYDAETGRLKRVGRVTHVMKRVSRSRFETPAGPIDGYYVEVDHRMDMQYAQLQMSVGLGCRLDDGPVYGSGRYTLTKLGLFTETKTVAAGLVSR*
Ga0075425_1016855891	3300006854	Populus Rhizosphere	QFDTPAGLIDGYYIEIDHRMEMEYYSQLHLTLGLGCRLDEGPVYGSGQYTVTKLGIFSETKTAAAALAKSVPFGELERN*
Ga0075425_1017568732	3300006854	Populus Rhizosphere	YDRETGRLKRIGRATHVVRRVSLSQFETPAGLIDGYYLEIDHRMDMQYAQLHMSLGLGCRLDEGPVYGVGRYTLTKLGLFTETKTAAAGLAIR*
Ga0075426_103765163	3300006903	Populus Rhizosphere	AGLIDGYYIEIDHRMDMEYNSQLHLSLGLGCRLDDGPVYGSGRYTLKKLGLFTETKTAAAGLARR*
Ga0075424_1013720231	3300006904	Populus Rhizosphere	ETGNLKRTGHASHLLKQVSHSRFNTPAGFIDGYYIEIEHQMDMRYAQLNLTLGLGCRLDDGPVYGYGQYTLKKLGIFSDTKVSAAGLAQN*
Ga0075424_1028852331	3300006904	Populus Rhizosphere	GVGITRQANFKMYDLETGRLKRAGRVTHLMKRVSRSRFETPAGLIDGYYVEVDHRMDMQYAQLHMSLGLGCRLDDGPVYGSGRYTLTKLGLFTETKTVAAGLVSR*
Ga0075436_1001020653	3300006914	Populus Rhizosphere	GFIDGYYIEIEHQMDMRYAQLNLTLGLGCRLDDGPVYGYGQYTLKKLGIFSDTKVSAAGLAQN*
Ga0075419_110967902	3300006969	Populus Rhizosphere	LKRAGRVTHFVKQISHSQFDTPAGLIDGYYIEIDHRMDMEYNSQLHLTLGLGCRLDEGPVYGSGRYTLKKLGLFTETKTAAAGLAKR*
Ga0079218_100759103	3300007004	Agricultural Soil	LKPPSFSQFDTPAGLFEGYYVEIDHLMDMEYRSQLHLTMRLGYRLNEGLVNAAGHYTVTKLGVFTATKAAGAALFIR*
Ga0079218_121387942	3300007004	Agricultural Soil	LKPPSFSQFDTPAGLFEGYYVEIDHLMDMEYRSQLHLTMGLGYRLNEGPVYASGHYTVTKLGVFTATKAAGAALFIR*
Ga0079218_133339522	3300007004	Agricultural Soil	LDGYYVEIDHRMDMEYYSQLHLTLGLGCQLNQGPVYGSGQYTLTKLGVFTESKTAGAVLVEQ*
Ga0075435_1005492712	3300007076	Populus Rhizosphere	FDVETGNLKRTGHASHLLKQVSHSRFNTPAGFIDGYYIEIEHQMDMRYAQLNLTLGLGCRLDDGPVYGYGQYTLKKLGIFSDTKVSAAGLAQN*
Ga0066710_1010046871	3300009012	Grasslands Soil	VKQILHSQFDTPAGLIDGYYIEIDHRMDMEYNSQLHLTLGLGCRLDEGPVYGSGQYTVKKLGLFTETKTAAAGLAKR
Ga0111539_126473171	3300009094	Populus Rhizosphere	KRVGRVTHMMKRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0075418_102790032	3300009100	Populus Rhizosphere	LATGRLKRAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLRKLGLFTETKTAAAALTQITDSVSPLR*
Ga0075418_110450512	3300009100	Populus Rhizosphere	FKMFDLATGRLKRAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTAAAALTQITDSLSPLR*
Ga0114129_110562341	3300009147	Populus Rhizosphere	SQFDTPAGRLDGYYVEIDHRMDMEYYSQLHLTLGLGCQLDLGPVYGSGQYTLTKLGVFSESKTAGAVLVAQ*
Ga0105243_129970041	3300009148	Miscanthus Rhizosphere	GQVTHWVKQVSPSRFDTPAGLIDGYFIEIDHRMDMPYAQLQMKLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTVSAALTQITDSISPLR*
Ga0075423_104574232	3300009162	Populus Rhizosphere	FETPAGLIDGYYIEIEHRMDMQFAQLHMSLGLGCRLDEGPVYGSGRYTLRKLGLFTETKTAAAALAVR*
Ga0075423_113142161	3300009162	Populus Rhizosphere	SGVGITRQANFKMYDLETGRLKRAGRVTHLMKRVSRSRFETPAGLIDGYYVEVDHRMDMQYAQLHMSLGLGCRLDDGPVYGSGRYTLTKLGLFTETKTVAAGLVSR*
Ga0075423_117364811	3300009162	Populus Rhizosphere	ISHSQFDTPAGLIDGYYIEIDHRMDMEYNSQLHLTLGLGCRLDDGPVYGSGQYTLKKLGLFTETKTAAAGLAKR*
Ga0126370_110728221	3300010358	Tropical Forest Soil	GRVTHLVKRVSRSRFDTPAGLIDGYYIEIDHRMEMEYHSQLHITLGLGCRLEEGPVYGSGQYTVTKLGIFTETKKATAALAKR*
Ga0126378_120430581	3300010361	Tropical Forest Soil	ETGKLKRAGQVTHFVKQISHSQFATPAGLINGYYIESDHRMDMEYKSQLHLTLGLGCRLDEGPVYGSGHYRLTKLGLFTETKTATAGPATR*
Ga0126377_131557572	3300010362	Tropical Forest Soil	SGRVIHSVKRISRSQFDTPAGLIDGYYIELDHRMEMEYRVSQLRLSLGLGFRLDEGPVYGSGQYTVKKLGIFSETKTAAVALAKR*
Ga0105239_118531761	3300010375	Corn Rhizosphere	QVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTASAALTQITDTVSPLR*
Ga0126381_1011108523	3300010376	Tropical Forest Soil	AGLIDGYYIELDHRMDMEYKSQLRLSLGLGFRLDEGPVYGSGQYTVKKLGIFSETKTAGAALAKR*
Ga0134127_104655971	3300010399	Terrestrial Soil	DGYFIEIDQQMDMQFAQLHMALGIGCRLDDGPVFGSGQYTLTKLGIFTESKTAAAGLSKSQKLAGS*
Ga0134127_110382922	3300010399	Terrestrial Soil	RFTTPAGLIDGYHVEIEHKMDMEYHSQLLLTVGLGCRLDEGLVYGSAHYKLRKLGGLLTETKTSAAALSTRSISLRY*
Ga0134127_136492671	3300010399	Terrestrial Soil	RAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTATAALSQITDSISPLR*
Ga0134123_101213251	3300010403	Terrestrial Soil	FDTPAGLIDGYFIEIDQQMDMQFAQLHMALGIGCRLDDGPVFGSGQYTLTKLGIFTESKTAAAGLLKGQKLAGS*
Ga0105246_102505271	3300011119	Miscanthus Rhizosphere	VYEPALPIFARDVRSGLGVARQANFKMYDLETGRLKRVGRVTHMMKRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0105246_122005921	3300011119	Miscanthus Rhizosphere	PAGLIDGYFIEIDHRMDMPYAQLQMKLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTVSAALTLITDSISPLR*
Ga0137369_109506961	3300012355	Vadose Zone Soil	IGSGVSILRQANFKMYDRDTGKLKRTGHASHLVKRVSRSQFETPAGLIDGYYIEIEHRMDMQFAQLHISLGLGCRLDEGPVYGSGRYTLRKLGLFTETKTAAAALAIR*
Ga0157349_10010122	3300012489	Unplanted Soil	DLATGRLKRAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTASAALTQITDTVSPLR*
Ga0157347_10153051	3300012502	Arabidopsis Rhizosphere	LATGRLKRAGRVTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTASAALTQITDSVSPLR*
Ga0157295_101852593	3300012906	Soil	PAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0137394_110832592	3300012922	Vadose Zone Soil	AGLIDGYYVEIDHRMDMEYNSQLHLTLGLGCRLDEGPVYGSGQYTLKKLGLFTETKTAAAGLAKR*
Ga0164298_100178744	3300012955	Soil	KMYDLETGRLKRVGRVTHVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0164306_101127481	3300012988	Soil	KRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0157373_109544791	3300013100	Corn Rhizosphere	GLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0157370_118350702	3300013104	Corn Rhizosphere	AGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0075312_10419271	3300014254	Natural And Restored Wetlands	IDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKTAAAALAKVNNTSLHQDP*
Ga0075325_10973111	3300014270	Natural And Restored Wetlands	HLVKTISPSRFDTPAGLIDGYYIEIDHHMDMRYAQLHMTLGLGCRLDDGPVFGSGQYTLTKLGIFRETKTAAAALTQKMVSPLH*
Ga0075322_11497701	3300014311	Natural And Restored Wetlands	RREASFKMFDIETGKLKRTGRVMHVVKQVSPSRFDTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKSAAAALAKVNNTSLHQDP*
Ga0132256_1019394041	3300015372	Arabidopsis Rhizosphere	QVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTAAAALTQITDSVSPLR*
Ga0132256_1029057931	3300015372	Arabidopsis Rhizosphere	KRVGRVTHVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR*
Ga0132257_1011749511	3300015373	Arabidopsis Rhizosphere	VTHWVKQVSPSRFDTPAGPIDGYFIEIDHRMDMPYAQLQMTLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTAAAALTQITDSVSPLR*
Ga0184621_100224671	3300018054	Groundwater Sediment	VTHLVKRISRSQFNTPAGLIDGYHIEIEHKMDMEYHSQLLLTVGLGCRLDEGLIYGSAHYRLKKLGGLLTETKTSAAALFKR
Ga0190265_106487401	3300018422	Soil	TPAGLIDGYHIEIEHKMDMEYHSQLLLTVGLGCRLDEGLVYGSAHYKLRKLGGLLTETKTSAAALSTRSISPSY
Ga0190265_127994892	3300018422	Soil	VKRISRSQFSTPAGLIDGYHIEIEHKMDMEYYSQLLLTVGLGCRLDEGLVYGSAQYKLRKLGGILTETKTSTAALSTRSISPSY
Ga0190275_110959241	3300018432	Soil	TGKLKRGRRVTHLLKPPSFSQFDTPAGLFEGYYVEIDHLMDMEYRSQLHLTMGLGYRLHEGPVYASGHYTVTKLGVFTATKAAGAALFTR
Ga0222622_100216511	3300022756	Groundwater Sediment	LKRAGRVTHFVKQISRSQFDTPAGLIDGYYIEIDHRMDMEYNSQLHLTLGLGCRLDDGPVYGSGQYTLKKLGLFTETKTAAAGLAKR
Ga0207654_103467712	3300025911	Corn Rhizosphere	MKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0207649_106744771	3300025920	Corn Rhizosphere	KRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0207701_107493761	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DVETGRLKRAGRVTHWVKQVSPSRFDTPAGLIDGYFIEIDHRMDMPYAQLQMKLGLGCRLDDGPVFGSGNYTLTKLGLFTETKTATAALSQITDSISPLR
Ga0208775_10231411	3300025992	Rice Paddy Soil	KMFDIETEKLKRTGRVMHVVKQVSPSRFDTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKTAAAALAKVNNTSLHQDP
Ga0208415_10030891	3300025993	Rice Paddy Soil	VMHVVKQVSPSRFDTPAGPIDGHFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTATKTAAAALAKVNNTSLHQDP
Ga0208002_10307331	3300026029	Natural And Restored Wetlands	NFKMFDENGKLKRTGRVSHLVKTISPSRFDTPAGLIDGYYIEIDHHMDMRYAQLHMTLGLGCRLDDGPVFGSGQYTLTKLGIFRETKTAAAALTQKMVSPLH
Ga0209968_10358282	3300027526	Arabidopsis Thaliana Rhizosphere	PPLPILTTDISSGSAVRRGANFKMFDNETGKLKRTGRVTHLVKQVSPSRFNTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTASKTAAAALTTINAASVH
Ga0210002_10326811	3300027617	Arabidopsis Thaliana Rhizosphere	RGANFKMFDNETGKLKRTGRVTHLVKQVSPSRFNTPAGLIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTASKTAAAALTTINAASVH
Ga0209387_11448371	3300027639	Agricultural Soil	LKRTGRVTHLVKQVSPSRFDTPAGLIDGYYIEIDHRMDMQYAQLHMALGLGCRLDDGPVFGSGHYTLTKLGLFTETKTAAAALTQITDTVSPMR
Ga0209998_100669591	3300027717	Arabidopsis Thaliana Rhizosphere	NFKMFDNETGKLKRTGRVTHLVKQVSPSRFNTPAGPIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTASKTAAAALTTINAASVH
Ga0209074_100447611	3300027787	Agricultural Soil	RQANFKMYDLETGRLKRVGRVTHVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0209814_102712392	3300027873	Populus Rhizosphere	MYDRDTGKLKRTGQASHLVKRVSRSQFETPAGLIDGYYIEIEHRMDMQFAQLHMSLGLGCRLDEGPVYGSGRYTLRKLGIFSETKTAAAALAIRQ
Ga0209974_100394611	3300027876	Arabidopsis Thaliana Rhizosphere	GANFKMFDNETGKLKRTGRVTHLVKQVSPSRFNTPAGLIDGYFIEIDHRMDMQFAQLDMTLGLGCRLDDGPVFGSGHYTLTKLGIFTASKTAAAALTTINAASVH
Ga0268266_111460242	3300028379	Switchgrass Rhizosphere	MKRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0299906_100390884	3300030606	Soil	KFTAAALARRQAGFKMYDLQTGKLKRAGRVTHRVKQISYSQLDTPAGLVDGYYIDIEHGMEMPFAQLDLTLRLGCRLDEGPVYGSGQYTLKKLGLFWETKTATATLAKY
Ga0302046_113223721	3300030620	Soil	GLIAGYYIEIDHHMDMRYAQLHMTLGLGCRLDDGPVFGSGQYTLTKLGIFRETKTATAALTQINKMVSPLR
Ga0310813_106626291	3300031716	Soil	GSGVGVARQANFKMYDLETGRLKRVGRVTHVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0307413_107813971	3300031824	Rhizosphere	SSQFDTPAGRLDGYYVEIDHRMDMEYYSQLHLTLGLGCQLDQGPVYGSGQYTLTKLGVFTESKTAGAVLVAQ
Ga0310900_108306092	3300031908	Soil	GSGVGVARQVNFKMYDLETGRLKRVGRVTHVMKRVSRSRFETPAGLIDGYYVEIDHRMDMQYAQLHMSLGLGCRLDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0307412_105442002	3300031911	Rhizosphere	FDTPAGRLDGYYVEIDHRMDMEYYSQLHLTVGLGCQLDHGPVYGSGQYTLTKLGVFTESKAAGAALVAQ
Ga0307479_119567141	3300031962	Hardwood Forest Soil	RVSRSQFDTPAGLIDGYYIEIDHRMDMEYYSQLYITLGLGCRLDEGPVYGSGQYTVTKLGLFTETKKAAAALVKR
Ga0307470_105854551	3300032174	Hardwood Forest Soil	TPAGLIDGYYIEIDHRMDMEYNSQLRLTLGLGCRLDEGPVYGSGQYTLKKLGLFTETKTAAAGLAKR
Ga0307471_1040745091	3300032180	Hardwood Forest Soil	LRLETGYKMYNRDSGMLKRAGRIIHFVKISHSQFDTPASLIDGYYIEIDHRMEMEYRSQLQLILGLGFRLNDGPVYRSGRYTLKKLGLSTETKTVAAGLTTR
Ga0310810_112017312	3300033412	Soil	KRVSRSRFETPAGLIDGYYFEIDHRMDMQYAQLHMSLGLGCRMDDGPVYGAGRYTLTKLGFFTETKTAAAGLVSR
Ga0364945_0256832_2_253	3300034115	Sediment	KQISRSRFSTPAGLIDGYHIEIEHKMDMEYRSQLLLTVSLGCRLDDGLVYGSSHYRLSKLGGLLTETKTSSAALSKGSIEPNS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087410

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences