Metagenome Family F087403

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087403
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	84 residues
Representative Sequence	MNGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDAEPTA
Number of Associated Samples	64
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.82 %
% of genes near scaffold ends (potentially truncated)	16.36 %
% of genes from short scaffolds (< 2000 bps)	82.73 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment (30.909 % of family members)
Environment Ontology (ENVO)	Unclassified (46.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Sediment (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.55% β-sheet: 0.00% Coil/Unstructured: 50.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00561	Abhydrolase_1	9.09
PF08386	Abhydrolase_4	4.55
PF04972	BON	3.64
PF01381	HTH_3	3.64
PF00199	Catalase	2.73
PF02735	Ku	2.73
PF02913	FAD-oxidase_C	2.73
PF16277	DUF4926	1.82
PF00565	SNase	0.91
PF03009	GDPD	0.91
PF02597	ThiS	0.91
PF05973	Gp49	0.91
PF12697	Abhydrolase_6	0.91
PF10118	Metal_hydrol	0.91
PF05957	DUF883	0.91
PF14534	DUF4440	0.91
PF07043	DUF1328	0.91
PF01594	AI-2E_transport	0.91
PF00208	ELFV_dehydrog	0.91
PF00043	GST_C	0.91
PF13426	PAS_9	0.91
PF03795	YCII	0.91
PF00501	AMP-binding	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	2.73
COG0753	Catalase	Inorganic ion transport and metabolism [P]	2.73
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	2.73
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	0.91
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.91
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	0.91
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.91
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.91
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.91
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG2902	NAD-specific glutamate dehydrogenase	Amino acid transport and metabolism [E]	0.91
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.91
COG4575	Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family	Translation, ribosomal structure and biogenesis [J]	0.91
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.91
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.82 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.82 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.82 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.73 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	14.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.55 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	11.82 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	1.82 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Maricaulales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.73 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	1.82 %
Azonexaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae	1.82 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.91 %
Robiginitomaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Robiginitomaculaceae	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	1.82 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	0.91 %
Hellea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Robiginitomaculaceae → Hellea	0.91 %
Acidovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Dechloromonas denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas denitrificans	1.82 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1.82 %
Hellea balneolensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Robiginitomaculaceae → Hellea → Hellea balneolensis	0.91 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.91 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.91 %
Acidovorax delafieldii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax delafieldii	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Dechloromonas denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas denitrificans	1.82 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1.82 %
Acidovorax delafieldii 2AN	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax delafieldii → Acidovorax delafieldii 2AN	0.91 %
Hellea balneolensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Robiginitomaculaceae → Hellea → Hellea balneolensis	0.91 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.91 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003858\|Ga0031656_10050778	All Organisms → cellular organisms → Bacteria → Proteobacteria	1643	Open in IMG/M
3300003858\|Ga0031656_10073059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1300	Open in IMG/M
3300003858\|Ga0031656_10167545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	763	Open in IMG/M
3300004072\|Ga0055512_10085922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Robiginitomaculaceae → Hellea → Hellea balneolensis	620	Open in IMG/M
3300004282\|Ga0066599_101161598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	573	Open in IMG/M
3300004481\|Ga0069718_15654526	All Organisms → cellular organisms → Bacteria → Proteobacteria	1025	Open in IMG/M
3300004481\|Ga0069718_15894905	Not Available	578	Open in IMG/M
3300004481\|Ga0069718_16334016	All Organisms → cellular organisms → Bacteria → Proteobacteria	1905	Open in IMG/M
3300004779\|Ga0062380_10027533	All Organisms → cellular organisms → Bacteria → Proteobacteria	1767	Open in IMG/M
3300004808\|Ga0062381_10116036	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300005827\|Ga0074478_1612690	Not Available	621	Open in IMG/M
3300006224\|Ga0079037_100001234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	13060	Open in IMG/M
3300006224\|Ga0079037_100008540	All Organisms → cellular organisms → Bacteria	6489	Open in IMG/M
3300006224\|Ga0079037_100218375	All Organisms → cellular organisms → Bacteria → Proteobacteria	1724	Open in IMG/M
3300006224\|Ga0079037_100513561	Not Available	1152	Open in IMG/M
3300009009\|Ga0105105_10734991	Not Available	590	Open in IMG/M
3300009037\|Ga0105093_10055163	Not Available	1813	Open in IMG/M
3300009037\|Ga0105093_10248626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	931	Open in IMG/M
3300009053\|Ga0105095_10812765	Not Available	523	Open in IMG/M
3300009075\|Ga0105090_10004234	All Organisms → cellular organisms → Bacteria → Proteobacteria	8247	Open in IMG/M
3300009075\|Ga0105090_10010082	All Organisms → cellular organisms → Bacteria	5618	Open in IMG/M
3300009075\|Ga0105090_10038259	All Organisms → cellular organisms → Bacteria → Proteobacteria	2993	Open in IMG/M
3300009075\|Ga0105090_10041578	All Organisms → cellular organisms → Bacteria → Proteobacteria	2873	Open in IMG/M
3300009075\|Ga0105090_10043975	All Organisms → cellular organisms → Bacteria → Proteobacteria	2788	Open in IMG/M
3300009075\|Ga0105090_10178409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1319	Open in IMG/M
3300009078\|Ga0105106_10122317	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300009078\|Ga0105106_10720879	Not Available	712	Open in IMG/M
3300009081\|Ga0105098_10058581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1586	Open in IMG/M
3300009081\|Ga0105098_10261897	Not Available	819	Open in IMG/M
3300009082\|Ga0105099_10307430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	930	Open in IMG/M
3300009085\|Ga0105103_10240406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	976	Open in IMG/M
3300009087\|Ga0105107_10145142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1669	Open in IMG/M
3300009091\|Ga0102851_13290931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	519	Open in IMG/M
3300009111\|Ga0115026_10074567	All Organisms → cellular organisms → Bacteria → Proteobacteria	1979	Open in IMG/M
3300009111\|Ga0115026_11198761	Not Available	618	Open in IMG/M
3300009120\|Ga0117941_1069600	Not Available	948	Open in IMG/M
3300009153\|Ga0105094_10100862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1629	Open in IMG/M
3300009165\|Ga0105102_10512889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	652	Open in IMG/M
3300009165\|Ga0105102_10823632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax → Acidovorax delafieldii → Acidovorax delafieldii 2AN	530	Open in IMG/M
3300009167\|Ga0113563_10167270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas denitrificans	2142	Open in IMG/M
3300009167\|Ga0113563_11648386	Not Available	759	Open in IMG/M
3300009168\|Ga0105104_10951214	Not Available	506	Open in IMG/M
3300009169\|Ga0105097_10157526	Not Available	1249	Open in IMG/M
3300009169\|Ga0105097_10650351	Not Available	595	Open in IMG/M
3300009170\|Ga0105096_10016066	All Organisms → cellular organisms → Bacteria → Proteobacteria	3618	Open in IMG/M
3300009170\|Ga0105096_10333611	Not Available	777	Open in IMG/M
3300009171\|Ga0105101_10268321	Not Available	825	Open in IMG/M
3300009179\|Ga0115028_10042897	All Organisms → cellular organisms → Bacteria → Proteobacteria	2219	Open in IMG/M
3300009179\|Ga0115028_11329081	Not Available	600	Open in IMG/M
3300013232\|Ga0170573_10915755	All Organisms → cellular organisms → Bacteria → Proteobacteria	1761	Open in IMG/M
3300013315\|Ga0173609_10180680	All Organisms → cellular organisms → Bacteria → Proteobacteria	2892	Open in IMG/M
3300013315\|Ga0173609_10941222	All Organisms → cellular organisms → Bacteria → Proteobacteria	4215	Open in IMG/M
3300014305\|Ga0075349_1154960	Not Available	539	Open in IMG/M
3300018083\|Ga0184628_10310963	Not Available	828	Open in IMG/M
3300018481\|Ga0190271_12697777	Not Available	596	Open in IMG/M
3300027683\|Ga0209392_1039258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1539	Open in IMG/M
3300027683\|Ga0209392_1081728	All Organisms → cellular organisms → Bacteria → Proteobacteria	1037	Open in IMG/M
3300027683\|Ga0209392_1169765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	673	Open in IMG/M
3300027721\|Ga0209492_1147043	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300027721\|Ga0209492_1182888	Not Available	723	Open in IMG/M
3300027778\|Ga0209464_10078642	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300027800\|Ga0209800_10281070	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300027831\|Ga0209797_10063227	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300027877\|Ga0209293_10190608	Not Available	1000	Open in IMG/M
3300027885\|Ga0209450_10014240	All Organisms → cellular organisms → Bacteria	4354	Open in IMG/M
3300027885\|Ga0209450_10019796	All Organisms → cellular organisms → Bacteria → Proteobacteria	3792	Open in IMG/M
3300027885\|Ga0209450_10467604	Not Available	922	Open in IMG/M
3300027885\|Ga0209450_10473848	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300027885\|Ga0209450_10600859	Not Available	804	Open in IMG/M
3300027885\|Ga0209450_11178210	Not Available	533	Open in IMG/M
3300027897\|Ga0209254_10151345	All Organisms → cellular organisms → Bacteria → Proteobacteria	1901	Open in IMG/M
3300027897\|Ga0209254_10206007	Not Available	1568	Open in IMG/M
3300027897\|Ga0209254_10724056	Not Available	683	Open in IMG/M
3300027899\|Ga0209668_10001475	All Organisms → cellular organisms → Bacteria	10097	Open in IMG/M
3300027900\|Ga0209253_10640084	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300027972\|Ga0209079_10073786	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300027975\|Ga0209391_10008299	All Organisms → cellular organisms → Bacteria → Proteobacteria	5490	Open in IMG/M
3300027975\|Ga0209391_10107625	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300032092\|Ga0315905_10133696	All Organisms → cellular organisms → Bacteria	2483	Open in IMG/M
3300032164\|Ga0315283_10723168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300032516\|Ga0315273_12277910	Not Available	633	Open in IMG/M
3300033406\|Ga0316604_10092798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	1581	Open in IMG/M
3300033406\|Ga0316604_10095560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas denitrificans	1558	Open in IMG/M
3300033408\|Ga0316605_10371544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1281	Open in IMG/M
3300033408\|Ga0316605_11218772	Not Available	727	Open in IMG/M
3300033408\|Ga0316605_11274661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300033408\|Ga0316605_11826194	Not Available	591	Open in IMG/M
3300033413\|Ga0316603_11051521	Not Available	769	Open in IMG/M
3300033413\|Ga0316603_11583204	Not Available	621	Open in IMG/M
3300033413\|Ga0316603_11881210	Not Available	566	Open in IMG/M
3300033414\|Ga0316619_10359111	Not Available	1138	Open in IMG/M
3300033416\|Ga0316622_100414960	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300033416\|Ga0316622_101428374	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300033418\|Ga0316625_100623720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	886	Open in IMG/M
3300033418\|Ga0316625_100975739	Not Available	751	Open in IMG/M
3300033419\|Ga0316601_100549736	Not Available	1115	Open in IMG/M
3300033419\|Ga0316601_101289153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	734	Open in IMG/M
3300033419\|Ga0316601_102299912	Not Available	543	Open in IMG/M
3300033434\|Ga0316613_10391025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	934	Open in IMG/M
3300033434\|Ga0316613_10462360	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300033481\|Ga0316600_10207827	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300033481\|Ga0316600_10272259	Not Available	1131	Open in IMG/M
3300033481\|Ga0316600_11386081	Not Available	500	Open in IMG/M
3300033482\|Ga0316627_100393877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1186	Open in IMG/M
3300033483\|Ga0316629_10251586	Not Available	1161	Open in IMG/M
3300033488\|Ga0316621_10401726	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300033521\|Ga0316616_101992014	Not Available	769	Open in IMG/M
3300033557\|Ga0316617_102189067	Not Available	570	Open in IMG/M
3300034128\|Ga0370490_0023751	All Organisms → cellular organisms → Bacteria	2050	Open in IMG/M
3300034169\|Ga0370480_0002896	All Organisms → cellular organisms → Bacteria	6539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.27%
Engineered	Engineered	2.73%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	69.09%
Terrestrial	Environmental → Terrestrial	28.18%
Wastewater	Engineered → Wastewater	2.73%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	65.45%
Soil	Environmental → Terrestrial → Soil	28.18%
Sediment	Environmental → Aquatic → Sediment	2.73%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	2.73%
Marine	Environmental → Aquatic → Marine	0.91%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Sediment	38.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	27.27%
Lentic	Environmental → Aquatic → Freshwater → Lentic	12.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Mine Water	Engineered → Wastewater → Industrial Wastewater → Mine Water	2.73%
Lake	Environmental → Aquatic → Freshwater → Lake	1.82%
Pond	Environmental → Aquatic → Freshwater → Pond	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	38.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	27.27%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	12.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.82%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	30.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	24.55%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	12.73%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	6.36%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.55%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	3.64%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	2.73%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	1.82%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.82%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Sediment	Engineered → Wastewater → Industrial Wastewater → Mine Water → Unclassified → Sediment	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004072	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D2	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009120	Lake sediment microbial communities from Tanners Lake, St. Paul, MN	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300013232	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA ? S1	Engineered	Open in IMG/M
3300013315	Sediment microbial communities from Acid Mine Drainage holding pond in Pittsburgh, PA, USA - 1B	Engineered	Open in IMG/M
3300014305	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027800	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - High cellulose week 8 (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027972	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300032092	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA121	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034128	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_16	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031656_100507781	3300003858	Freshwater Lake Sediment	MNPSATTPSNTARKTDYEGYESPEVLVTDPTLSAAQKLARLEAWEEDLKAGMRASDESMTSITPGLSSALLPRVMACLESLRSAEKPGVDPTA*
Ga0031656_100730591	3300003858	Freshwater Lake Sediment	MNRTTDYDRYETPEALLTDGTLSAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRLMACLEQLASAAKPDGEPTV*
Ga0031656_101675451	3300003858	Freshwater Lake Sediment	MNLSANAPSNATRNADYDGYETPEALVTDPKLSSAQKLARLEAWEEDLNAGLRASDESMTSITPGLGGALLQRVMACLEHLRSAGKPDGEPTA*
Ga0055512_100859221	3300004072	Natural And Restored Wetlands	MNRTTDYDRYETPEMLVTDRTLSAAQKVARLEAWEEDLKAGLRASDESMTSNNPGLSGALLQRVEVCLEQLRSAEKPAV*
Ga0066599_1011615981	3300004282	Freshwater	MNRTTDYDCYETPEALLTDRTLSAAQKLARLQAWDEDLKAGLRASDESMTSSNPGLSAPLLQRVMACLEQLGSAAKPDGEPTA*
Ga0069718_156545262	3300004481	Sediment	MNPSVNAPSNASRKADYDGYETPEALVTDPKLSSAQKLARLEAWEEDLKAGLRASDESMTSVSPGLGGALLQRVMACLEQLRSAAKPDGEPAA*
Ga0069718_158949052	3300004481	Sediment	MNPSATAPSSTTRKADYDGYETPEALVADAKLSAAQKLARLEAWEEDLNAGLRASDESMTSITPGLSGALLQRVMACLESLRSAEKPKSD*
Ga0069718_163340164	3300004481	Sediment	MNPSATAPSNTARKADYDGYETPEVLVTDPKLSAAQKLARLEAWEEDLKAGLRASDESMTSTNSGLSGALLQRVMACLEPLRSAEKPDSD*
Ga0062380_100275332	3300004779	Wetland Sediment	MNPKTDYDRHETPEVLVTDPRLSAAQKLARLEAWEEDLKAGLRASDESMTGPNPGLTAALLQRVMACLEQLRSAGTPDVKPAA*
Ga0062381_101160361	3300004808	Wetland Sediment	MSGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRIAEKPDAEPTA*
Ga0074478_16126902	3300005827	Sediment (Intertidal)	MNGTTDYDRYETPEVLVTDQTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDAEPAA*
Ga0079037_1000012345	3300006224	Freshwater Wetlands	MNRKTDYDRYESPEGLLTDRSLSARQKLARLEEWAEDLRAGLRASDESMTSLEPGLSSALLQRVMACLDQLRDAQGRDLERSA*
Ga0079037_1000085409	3300006224	Freshwater Wetlands	MNRTTDYDRHETPEVLVTDPALSAAQKLARLEAWEEDLKAGMRATDESMTSDNPGLSGALLQRVMACLEQLRSAEKPDVEPTA*
Ga0079037_1002183751	3300006224	Freshwater Wetlands	MNPKTDYDRYETPEALVTDPRLSAEQKLARLEAWAEDLNAGLRASDESMTSTTPGQGGALLQRVMACLEQLRSAATPDGAPTA*
Ga0079037_1005135611	3300006224	Freshwater Wetlands	MSGTTDYDRYETPEVLVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDGEPTV*
Ga0105105_107349911	3300009009	Freshwater Sediment	MNRDIEHNRPETPELLLTDRTLSAAQKIVLLESWHEDLQAGLRASDESMTSLDPGLTGSLLQRVMACLETLRSVAKEGAERTA*
Ga0105093_100551634	3300009037	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIKSGLSGALLQRVVSCMEQLRSAEKPDGEPTA*
Ga0105093_102486261	3300009037	Freshwater Sediment	MNRDIEHNRPETPELLLTDRTLSAAQKIVLLESWHEDLQAGLRASDESMTSLDPGLTGSLLQRVMACLETLRSVAKEGAERT
Ga0105095_108127651	3300009053	Freshwater Sediment	MNRTTDYDRYETPEALLTDGTLTAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRVMACLEQLGSAAKPDGEPAV*
Ga0105090_100042345	3300009075	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIEPGLSGALLQRVIACLEQLRSAEKADGDTTA*
Ga0105090_100100823	3300009075	Freshwater Sediment	MNPSATAASSTTRKADYDGYETPEALVADATLSAAQKLARLEAWEEDLNAGLRASDESMTSITPGLSGALLQRVMACLESLRSAEKPKSD*
Ga0105090_100382595	3300009075	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTGIKPGLSSALLQRVMACLEQLRSAENPDRERTA*
Ga0105090_100415782	3300009075	Freshwater Sediment	MNRTTDYDRYETPEVLVSDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIKPGLSGALLLRVAACLEQVRSADKPDGEPTA*
Ga0105090_100439751	3300009075	Freshwater Sediment	MNPKTDYDRYETPEVLVTDPKLSTAQKLARLEAWEEDLKAGLRASDESMTSPNPGLTGALLQRVMACLEQLRSAETPDVKPAA*
Ga0105090_101784092	3300009075	Freshwater Sediment	MNRTTDYDRHETPEVLVTDPALSAAQKLARLEAWEEDLKAGMRATDESMTSDNPGLSGELLQRVMACLEQLRSAEKPDVEPTA*
Ga0105106_101223172	3300009078	Freshwater Sediment	MNRTTDYDRYETPEALLTDGTLTAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRVMACLEQLGSAAKPDGEPTA*
Ga0105106_107208792	3300009078	Freshwater Sediment	LQLSPIHVGEPARASMNRKTDYEGYESPEALVTDPKLSAAQKLARLEAWEEDLKAGLRASDDSMTSVNPGLSGPLLQRVMACLEPLRSAEKPKSD*
Ga0105098_100585812	3300009081	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLAWLEAWEEDLKAGLRASDESMTGIKPGLSSALLQRVMACLEQLRSAENPDRERTA*
Ga0105098_102618972	3300009081	Freshwater Sediment	MNRTTDYDRHETPEVLVTDPALSAAQKLARLEAWEEDLKAGLRASDESMTSIKPGLSGALLLRVAACLEQVRSADKPDGEPTA*
Ga0105099_103074301	3300009082	Freshwater Sediment	TTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIKSGLSGALLQRVVSCMEQLRSAEKPDGEPTA*
Ga0105103_102404062	3300009085	Freshwater Sediment	MNPKTDYDRYETPEVLVTDPKLSTAQKLARLEAWEEDLKAGLRASDESMTGPNPGLTGALLQRVMACLEQLRSAETPDVKPAA*
Ga0105107_101451422	3300009087	Freshwater Sediment	MNRTTDYDRYETPEALLTDGTLSAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRVMACLEQLGSAAKPDGEPTA*
Ga0102851_132909311	3300009091	Freshwater Wetlands	MNPKTDYDRYETPEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPTA*
Ga0115026_100745674	3300009111	Wetland	MNRKTDYDRYESPEGLLTDRSLSARQKLARLEEWAEDLRAGLRASDESMTSLKPGLSSALLQRVMACLDQLRDAQGRDLERSA*
Ga0115026_111987612	3300009111	Wetland	MNRTTDYDRHETPELLVTDPALSATQKLARLEAWEEDLKAGLRATDESMTSDNPGLSGALLQRVMACLEQLRGAETPDLEPTA*
Ga0117941_10696003	3300009120	Lake Sediment	MNGTTDYDRYETPEVLVTDQTLSAAQKLARLEQWEEDLKAALRATDESMTSVHPGLSGALLQRVMACLEPLRSAEKPDAEPAV*
Ga0105094_101008622	3300009153	Freshwater Sediment	MNRTTDYDRYETPEALLTDGTLSAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRVMACLEQLASAAKPDGEPTV*
Ga0105102_105128892	3300009165	Freshwater Sediment	MNPKTDYDRYETPEALVSDQSMTAAQKIARLEAWQEDLNAGLRASDESMTSTKPGLGGALLQRVMACLEQLRSVETPDVKP
Ga0105102_108236321	3300009165	Freshwater Sediment	RMNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTGIKPGLSSALLQRVMACLEQLRSAENPDRERTA*
Ga0113563_101672701	3300009167	Freshwater Wetlands	MSGTTDYDRYETPEALVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDGEPTV*
Ga0113563_116483862	3300009167	Freshwater Wetlands	MNRTTDYDRHETPELLVTDPALSATQKLARLEAWEEDLKAGLRASDESMTSITPGLGGALLQRVMACLEQLRSAAKPDGEPAA*
Ga0105104_109512141	3300009168	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTGIKPGLSGALLQRVMACLEQLRSAEK
Ga0105097_101575262	3300009169	Freshwater Sediment	MNPSATAASSTTRKADYDGYETPEALVADATLSAAQKLARLEAWEEDLNAGLRASDESMTSITPGLSGALLQRVMACLESLRSAEQPKSD*
Ga0105097_106503511	3300009169	Freshwater Sediment	MNPKTDYDRYETPEVLVNDPKLSTAQKLARLEAWEEDLKAGLRASDESMTGPNPGLTGALLQRVMACLEQLRSAETPDVKPAA*
Ga0105096_100160663	3300009170	Freshwater Sediment	MNHTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTGIKPGLSSALLQRVMAFLEQLRSAENPDRERTA*
Ga0105096_103336112	3300009170	Freshwater Sediment	MNRTTDYDRYETPEALLTDGTLSVAQKRARLQAWEEDLKAGLRASDESMTSSNPGRSAPLLQRVMACLEQFASAAKPDGEPTV*
Ga0105101_102683211	3300009171	Freshwater Sediment	RYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIKSGLSGALLQRVVSCMEQLRSAEKPDGEPTA*
Ga0115028_100428975	3300009179	Wetland	AAVVTARMNPKTDYDRYETPEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAVTPDGAPTA*
Ga0115028_113290812	3300009179	Wetland	MNSSATVPSNTARKADYDGYETPEVLVTDPKLSAAQKLARLEAWEEDLKAGLRASDESMTSITPGLSGALLQRVMACLEQLRSAEKLDVEPTA*
Ga0170573_109157554	3300013232	Sediment	MNPKTDYDRYETPEALVTDQTLSATQKLARLEAWEEDLKAGLRASDESMTSITPGLGGALLQRVMACLEQLRSVEKLDVEPTA*
Ga0173609_101806804	3300013315	Sediment	MNPKTDYDRYETPEALVTDQTLSATQKLARLEAWEEDLKAGLRASDESMTSNTPGLGGALLQRVMACLEQLRSVEKLDVEPTA*
Ga0173609_109412228	3300013315	Sediment	MNSSATAPSNTTRKTDYEGYETPEALVTDPKLSAAQKLARLEAWEEDLEAGLRASDESMTSSTTPGLGGALLQRVMACLEPLRSAEKPNSD*
Ga0075349_11549601	3300014305	Natural And Restored Wetlands	GYETPEALVTDAKLSGAQKLAKLEAWEEDLNAELRASDESMTSITPGLSGPLLQRVMACLEPLRSAAKPKSD*
Ga0184628_103109631	3300018083	Groundwater Sediment	MNRATDYDRYETPEVLVTDPTLSAAQKVARLEAWEEDLKAGLRASDESMTSNNPGLSGALLQRVEACLAQLRSAEKPDV
Ga0190271_126977772	3300018481	Soil	MNASVTASSSSAQKIDYEGYETPEALVTDSTLSTAEKLARLEAWEEDLQAGLRASDESMTSITPGLSGALLQRV
Ga0209392_10392581	3300027683	Freshwater Sediment	MNRTTDYDRYETPEVLVSDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIKPGLSGALLLRVAACLEQVRSADKPDGEPTA
Ga0209392_10817282	3300027683	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIKSGLSGALLQRVVSCMEQLRSAEKPDGEPTA
Ga0209392_11697652	3300027683	Freshwater Sediment	TTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIEPGLSGALLQRVIACLEQLRSAEKADGDTTA
Ga0209492_11470432	3300027721	Freshwater Sediment	MNPSATAASSTTRKADYDGYETPEALVADATLSAAQKLARLEAWEEDLNAGLRASDESMTSITPGLSGALLQRVMACLESLRSAEQPKSD
Ga0209492_11828882	3300027721	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTGIKPGLSSALLQRVMACLEQLRSAENPDRERTA
Ga0209464_100786422	3300027778	Wetland Sediment	MSGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRIAEKPDAEPTA
Ga0209800_102810702	3300027800	Freshwater	MNLSTDYDRHETPEVLVADRTLSAAQKLARLEAWEEDLKAGLRASDESMTSNNPGLSGALLQRVMACLEQLRSAEKPDGEPTA
Ga0209797_100632271	3300027831	Wetland Sediment	MNPKTDYDRHETPEVLVTDPRLSAAQKLARLEAWEEDLKAGLRASDESMTGPNPGLTAALLQRVMACLEQLRSAGTPDVKPAA
Ga0209293_101906082	3300027877	Wetland	MNRTTDYDRHETPELLVTDPALSATQKLARLEAWEEDLKAGLRATDESMTSDNPGLSGALLQRVMACLDQLRDAQGRDLERSA
Ga0209450_100142406	3300027885	Freshwater Lake Sediment	MNPKTDYDRYETPEALVTDTTLSAAQKLARLEAWEEDLKAGLRASDESMTSINPGLSGALLQRVMACLEPLRSAEKPDMKATG
Ga0209450_100197961	3300027885	Freshwater Lake Sediment	MSNTTDYDRYETPEVLVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDGEPTV
Ga0209450_104676042	3300027885	Freshwater Lake Sediment	MNPSATAPSNSARKTDYEGYESPEVLVTDPKLSAAQKLVRLEAWEEDLKAGMRASDESMTSITPGLSSALLPRVMACLEPLRSAEKPGVDPNA
Ga0209450_104738481	3300027885	Freshwater Lake Sediment	MNGTTDYDRYETPEVLVTDRTLSAAQRLARLEQWEEDLKAALRATDESMTSVHPGLSGALLQRVMACLEPLRSAEKPDAEPAV
Ga0209450_106008592	3300027885	Freshwater Lake Sediment	MNPSATAASSTTRKADYDGYETPEALVADATLSAAQKLARLEAWEEDLNAGLRASDESMTSITPGLSGALLQRVMACLESLRSAEKPKSD
Ga0209450_111782102	3300027885	Freshwater Lake Sediment	MNRTTDYDRHETPEVLVTDPALSAAQKLARLEAWEEDLKAGMRATDESMTSDNPGLSGTLLQRVMACLEQLRSAEKPDVEPTA
Ga0209254_101513452	3300027897	Freshwater Lake Sediment	MNLSANAPSNATRNADYDGYETPEALVTDPKLSSAQKLARLEAWEEDLNAGLRASDESMTSITPGLGGALLQRVMACLEHLRSAGKPDGEPTA
Ga0209254_102060071	3300027897	Freshwater Lake Sediment	MNPSATTPSNTARKTDYEGYESPEVLVTDPTLSAAQKLARLEAWEEDLKAGMRASDESMTSITPGLSSALLPRVMACLESLRSAEKPGVDPTA
Ga0209254_107240561	3300027897	Freshwater Lake Sediment	MNRTTDYDRYETPEALLTDGTLSAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRLMACLEQLASAAKPDGEPTV
Ga0209668_1000147510	3300027899	Freshwater Lake Sediment	MSGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDGEPTV
Ga0209253_106400842	3300027900	Freshwater Lake Sediment	MNGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDAEPTA
Ga0209079_100737861	3300027972	Freshwater Sediment	MNPKTDYDRYETPEVLVTDPKLSTAQKLARLEAWEEDLKAGLRASDESMTGPNPGLTGALLQRVMACLEQLRSAETPDVKPAA
Ga0209391_100082994	3300027975	Freshwater Sediment	MNRTTDYDRYETPEVLVTDRTLSAAQKLARLEAWEEDLKAGLRASDESMTSIEPGLSGALLQRVIACLEQLRSAEKADGDTTA
Ga0209391_101076252	3300027975	Freshwater Sediment	MNRTTDYDRYETPEALLTDGTLSAAQKLARLQAWEEDLKAGLRASDESMTSSNPGLSAPLLQRVMACLEQLASAAKPDGEPTV
Ga0315905_101336961	3300032092	Freshwater	MNGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDESMTSIHPGLSGALLQRVMACLEPLRSAEKPDAEPTA
Ga0315283_107231682	3300032164	Sediment	MNPSATTPSNTARKTDYEGYESPEVLVTDPTLSAAQKLARLEVWEEDLKAGMRASDESMTSITPGLSSALLPRVMACLEPLRSAEKPGVDPTA
Ga0315273_122779101	3300032516	Sediment	MNGTTDYDRYETPEVLVTDRTLSAAQKLARLEQWEEDLKAALRATDDSMTSVNPGLSGALLQRVMACLEPLRSAEKPNAEPTA
Ga0316604_100927983	3300033406	Soil	MNRTTDYDRHETPELLVTDPALSATQKLARLEAWEEDLKAGLRATDESMTSDNPGLSGALLQRVMACLEQLRSAEKPDVEPTA
Ga0316604_100955601	3300033406	Soil	MSGTTDYDRYETPEVLVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRGAEKPDGEPTV
Ga0316605_103715442	3300033408	Soil	MNPKTDYDRYETPEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPPA
Ga0316605_112187722	3300033408	Soil	MNGTTDYDRYETPEVLVTDRTLSAAQKIARLEQWEEDLKAALRATDDSMTSVNPGLSGALLQRVMACLEPLRSAEKPDAEPTA
Ga0316605_112746612	3300033408	Soil	MSGTTDYDRYETPEALVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVHPGLSGALLQRVMACLEPLRSAEKPDMKATG
Ga0316605_118261941	3300033408	Soil	MNSSATVPSNTARKADYDGYETPEVLVTDPKLSAAQKLARLEAWEEDLKAGLRASDESMTSITPGLSGALLQRVMACLEPLRSVE
Ga0316603_110515211	3300033413	Soil	MNLSVNAPSNATRRADYDGYETPEALLTDPKLSSAQKLARLEAWEEDLKAGLRASDESMTSITPGLGGALLQRVMACLEQLRSAAKPDGEPAA
Ga0316603_115832041	3300033413	Soil	MNGTTDYDRYETPEVLVTDRTLSAAQKIARLEQWEEDLKAALRATDDSMTSVNPALSGALLQRVMACLEPLRSAEKPDAEPTA
Ga0316603_118812101	3300033413	Soil	MNGTTDYDRYETPEVLVTDQTLSAAQKLARLEQWEEDLKAALRATDESMTSVHPGLSGALLQRVMACLEPLRSAEKPDAEPAV
Ga0316619_103591114	3300033414	Soil	PEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPTA
Ga0316622_1004149603	3300033416	Soil	PGTPVHVHFGKPARASMNRTTDYDRHETPELLVTDPALSATQKLARLEAWEEDLKAGLRATDESMTSDNPGLSGALLQRVMACLEQLRSAEKPDVEPTA
Ga0316622_1014283743	3300033416	Soil	MNPKTDYDRYETPEALVTDPRLSAEQKLARLEAWAEDLNAGLRASDESMTSTTPGQGGALLQRVMACLDQLRTAATSDGVPTA
Ga0316625_1006237202	3300033418	Soil	MNPKTDYDRYEIPEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPTA
Ga0316625_1009757392	3300033418	Soil	MNLSVDAPSNATRRADYDGYETPEALLTDPKLSSAQKLARLEAWEEDLKAGLRASDESMTSITPGLGGALLQRVMACLEQLRSAAKPDGEPAA
Ga0316601_1005497362	3300033419	Soil	MNLSVNAPSNATRRADYDGYETPEALLTDPKLSSAQKLARLEAWEEDLKAGLRASDESMTSITPGLGGALLQRVMACLEQLRSAAKPDGEPAARVPE
Ga0316601_1012891532	3300033419	Soil	MNPKTDYDRYETPEALVTDPRLSAEQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPPA
Ga0316601_1022999122	3300033419	Soil	ARKADYDGYETPEVLVTDPKLSAAQKLARLEAWEEDLKAGLRASDESMTSTNSGLSGALLQRVMACLEPLRSAEKPDSD
Ga0316613_103910251	3300033434	Soil	PLKQARQMNLSVNAPSNATRRADYDGYETPEALLTDPKLSSAQKLARLEAWEEDLKAGLRASDESMTSITPGLGGALLQRVMACLEQLRSAVKPDGEPAARVPE
Ga0316613_104623601	3300033434	Soil	MNPKTDYDRYETPEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPTA
Ga0316600_102078271	3300033481	Soil	MNSSATVPSNTARKADYDGYETPEVLVTDPKLSAAQKLARLEAWEEDLKAGLRASDESMTSITPGLSGALLQRVMACLEPLRSAEKPDSD
Ga0316600_102722591	3300033481	Soil	MSGTTDYDRYETPEVLVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDGEPTV
Ga0316600_113860812	3300033481	Soil	EALVADATLSAAQKLSRLEAWAEDLQAGLRASDESMTSSITPGLGGALLQRVMACLEPLRSAEKPDVDVKAT
Ga0316627_1003938771	3300033482	Soil	MNPKTDYDRYETPEALVTDPRLSAAQKLTRLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACL
Ga0316629_102515862	3300033483	Soil	MSGTTDYDRYETPEMLVTDRTLSAAQKLTRLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDGEPTV
Ga0316621_104017263	3300033488	Soil	MNLSVNAPSNATRKADYDCYETPEALLTDPKLSSAQKLARLEAWEEDLKAALRATDESMTGVNPGLSGALLQRVMACLEQLRSAATPDGAPTA
Ga0316616_1019920141	3300033521	Soil	MNSSATVPSNTARKADYDGYETPEVLVTDPTLSAAQKLARLEAWEEDLKAGMRASDESMTSINPGLSGPLLQRVMACLESLRSAAKPAEKATA
Ga0316617_1021890671	3300033557	Soil	MNGTTDYDRYETPEVLVTDQTLSAAQKLARLEQWEEDLKAALRATDESMTSVNPGLSGALLQRVMACLEPLRSAEKPDG
Ga0370490_0023751_1647_1892	3300034128	Untreated Peat Soil	MNRKTDYEGYETPEALVTDPKLSAAQKLARLEAWEEDLKAGMRASDESMTSSITPGLSGPLLQRVMACLEPLRSPEKPNSD
Ga0370480_0002896_1578_1829	3300034169	Untreated Peat Soil	MNRKTDYEGYETPEALVTDPKLSAAQKLARLEAWEEDLKAGLRASDESMTSSITPGLSGPLLQRVMACLEPLRSAEKPDVQAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087403

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences