Metagenome Family F087400

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087400
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	65 residues
Representative Sequence	MTSTIEVFPFRYRDARTGKWVKARYKAERAEIAARYAEWEITGPGEERRPSEGYFNPGRREG
Number of Associated Samples	35
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	39.09 %
% of genes near scaffold ends (potentially truncated)	20.91 %
% of genes from short scaffolds (< 2000 bps)	83.64 %
Associated GOLD sequencing projects	29
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.182 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (42.727 % of family members)
Environment Ontology (ENVO)	Unclassified (44.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (42.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.78% β-sheet: 25.56% Coil/Unstructured: 66.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04392	ABC_sub_bind	9.09
PF00462	Glutaredoxin	4.55
PF08402	TOBE_2	2.73
PF13884	Peptidase_S74	1.82
PF14081	DUF4262	1.82
PF13356	Arm-DNA-bind_3	0.91
PF11185	DUF2971	0.91
PF02275	CBAH	0.91
PF01609	DDE_Tnp_1	0.91
PF14088	DUF4268	0.91
PF00149	Metallophos	0.91
PF07589	PEP-CTERM	0.91
PF00082	Peptidase_S8	0.91
PF00801	PKD	0.91
PF02518	HATPase_c	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	9.09
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.91
COG3049	Penicillin V acylase or related amidase, Ntn superfamily	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.91
COG4927	Predicted choloylglycine hydrolase	General function prediction only [R]	0.91
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
All Organisms	root	All Organisms	40.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
cellular organisms	root	All Organisms → cellular organisms	40.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.82 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9.09 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.64 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	6.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.64 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.64 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	1.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.64 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.73 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	1.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.64 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.73 %
Plasticicumulans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans	1.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
unclassified Burkholderiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	6.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.64 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.73 %
Plasticicumulans lactativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	1.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Aphanothece sacrum	species	Aphanothece sacrum	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003858\|Ga0031656_10006246	All Organisms → cellular organisms → Bacteria	4940	Open in IMG/M
3300003858\|Ga0031656_10169661	Not Available	757	Open in IMG/M
3300004050\|Ga0055491_10032888	Not Available	1091	Open in IMG/M
3300006224\|Ga0079037_100038354	All Organisms → cellular organisms → Bacteria → Proteobacteria	3630	Open in IMG/M
3300006224\|Ga0079037_100043576	All Organisms → cellular organisms → Bacteria → Proteobacteria	3448	Open in IMG/M
3300006224\|Ga0079037_100076503	Aphanothece sacrum	2728	Open in IMG/M
3300006224\|Ga0079037_100210330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1753	Open in IMG/M
3300006224\|Ga0079037_100502250	All Organisms → cellular organisms → Bacteria → Proteobacteria	1164	Open in IMG/M
3300006224\|Ga0079037_100974891	Not Available	838	Open in IMG/M
3300006224\|Ga0079037_101729144	Not Available	625	Open in IMG/M
3300006224\|Ga0079037_102305503	Not Available	537	Open in IMG/M
3300009075\|Ga0105090_10026835	All Organisms → cellular organisms → Bacteria	3572	Open in IMG/M
3300009075\|Ga0105090_10164119	Not Available	1383	Open in IMG/M
3300009075\|Ga0105090_10333461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	927	Open in IMG/M
3300009075\|Ga0105090_10438535	Not Available	795	Open in IMG/M
3300009075\|Ga0105090_10461260	Not Available	773	Open in IMG/M
3300009075\|Ga0105090_10666352	Not Available	632	Open in IMG/M
3300009078\|Ga0105106_10091689	All Organisms → cellular organisms → Bacteria	2236	Open in IMG/M
3300009081\|Ga0105098_10023015	Not Available	2400	Open in IMG/M
3300009085\|Ga0105103_10102243	Not Available	1490	Open in IMG/M
3300009085\|Ga0105103_10241400	Not Available	974	Open in IMG/M
3300009091\|Ga0102851_10390866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1396	Open in IMG/M
3300009091\|Ga0102851_10588540	Not Available	1160	Open in IMG/M
3300009091\|Ga0102851_10619620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1133	Open in IMG/M
3300009091\|Ga0102851_11726849	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300009091\|Ga0102851_12676291	Not Available	572	Open in IMG/M
3300009091\|Ga0102851_13103455	Not Available	533	Open in IMG/M
3300009111\|Ga0115026_10136292	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1560	Open in IMG/M
3300009111\|Ga0115026_10936174	Not Available	688	Open in IMG/M
3300009111\|Ga0115026_11763811	Not Available	523	Open in IMG/M
3300009131\|Ga0115027_11028513	Not Available	647	Open in IMG/M
3300009131\|Ga0115027_11472118	Not Available	557	Open in IMG/M
3300009166\|Ga0105100_10471180	Not Available	763	Open in IMG/M
3300009167\|Ga0113563_10255591	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300009167\|Ga0113563_10516265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1306	Open in IMG/M
3300009167\|Ga0113563_10705718	Not Available	1131	Open in IMG/M
3300009167\|Ga0113563_11265843	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300009167\|Ga0113563_11881362	Not Available	713	Open in IMG/M
3300009167\|Ga0113563_12024788	Not Available	688	Open in IMG/M
3300009170\|Ga0105096_10026731	All Organisms → cellular organisms → Bacteria → Proteobacteria	2819	Open in IMG/M
3300009179\|Ga0115028_10670130	Not Available	787	Open in IMG/M
3300009179\|Ga0115028_10812977	Not Available	729	Open in IMG/M
3300014306\|Ga0075346_1071289	Not Available	719	Open in IMG/M
3300014319\|Ga0075348_1141733	Not Available	632	Open in IMG/M
3300027683\|Ga0209392_1086244	Not Available	1006	Open in IMG/M
3300027871\|Ga0209397_10091210	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1256	Open in IMG/M
3300027885\|Ga0209450_10011408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4797	Open in IMG/M
3300027885\|Ga0209450_11087209	Not Available	562	Open in IMG/M
3300027890\|Ga0209496_10175552	Not Available	1000	Open in IMG/M
3300027897\|Ga0209254_10049685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3663	Open in IMG/M
3300027897\|Ga0209254_10049744	All Organisms → cellular organisms → Bacteria	3661	Open in IMG/M
3300027897\|Ga0209254_10053859	All Organisms → cellular organisms → Bacteria → Proteobacteria	3501	Open in IMG/M
3300027897\|Ga0209254_10103326	Not Available	2388	Open in IMG/M
3300027897\|Ga0209254_10118507	Not Available	2201	Open in IMG/M
3300027897\|Ga0209254_10122365	Not Available	2159	Open in IMG/M
3300027897\|Ga0209254_10330436	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1154	Open in IMG/M
3300027897\|Ga0209254_10431573	Not Available	969	Open in IMG/M
3300027897\|Ga0209254_10511098	Not Available	866	Open in IMG/M
3300027897\|Ga0209254_10710296	Not Available	692	Open in IMG/M
3300027897\|Ga0209254_10901905	Not Available	587	Open in IMG/M
3300027975\|Ga0209391_10034070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2503	Open in IMG/M
3300027975\|Ga0209391_10273004	Not Available	678	Open in IMG/M
3300032261\|Ga0306920_103542229	Not Available	576	Open in IMG/M
3300033408\|Ga0316605_10099904	All Organisms → cellular organisms → Bacteria → Proteobacteria	2237	Open in IMG/M
3300033408\|Ga0316605_10159483	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1846	Open in IMG/M
3300033408\|Ga0316605_10235220	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1566	Open in IMG/M
3300033408\|Ga0316605_10384558	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300033408\|Ga0316605_10733761	All Organisms → cellular organisms → Bacteria → Proteobacteria	934	Open in IMG/M
3300033408\|Ga0316605_10833329	Not Available	878	Open in IMG/M
3300033408\|Ga0316605_11047429	Not Available	784	Open in IMG/M
3300033408\|Ga0316605_11142278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	751	Open in IMG/M
3300033408\|Ga0316605_12035517	Not Available	559	Open in IMG/M
3300033408\|Ga0316605_12134442	Not Available	545	Open in IMG/M
3300033408\|Ga0316605_12310889	Not Available	523	Open in IMG/M
3300033408\|Ga0316605_12432329	Not Available	509	Open in IMG/M
3300033413\|Ga0316603_10576450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1041	Open in IMG/M
3300033413\|Ga0316603_10779349	Not Available	897	Open in IMG/M
3300033413\|Ga0316603_10799335	Not Available	886	Open in IMG/M
3300033413\|Ga0316603_10823335	Not Available	873	Open in IMG/M
3300033413\|Ga0316603_11531043	Not Available	632	Open in IMG/M
3300033413\|Ga0316603_11816161	Not Available	577	Open in IMG/M
3300033414\|Ga0316619_10241997	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1334	Open in IMG/M
3300033414\|Ga0316619_10564255	Not Available	940	Open in IMG/M
3300033414\|Ga0316619_11027614	Not Available	719	Open in IMG/M
3300033416\|Ga0316622_100083291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3149	Open in IMG/M
3300033416\|Ga0316622_100365608	Not Available	1610	Open in IMG/M
3300033416\|Ga0316622_100399666	All Organisms → cellular organisms → Bacteria → Proteobacteria	1544	Open in IMG/M
3300033416\|Ga0316622_100450082	Not Available	1458	Open in IMG/M
3300033416\|Ga0316622_100989485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	981	Open in IMG/M
3300033416\|Ga0316622_101960991	Not Available	680	Open in IMG/M
3300033416\|Ga0316622_102462958	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300033418\|Ga0316625_101131853	Not Available	710	Open in IMG/M
3300033418\|Ga0316625_102544107	Not Available	518	Open in IMG/M
3300033419\|Ga0316601_100393140	Not Available	1302	Open in IMG/M
3300033419\|Ga0316601_100443657	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300033419\|Ga0316601_100698650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	995	Open in IMG/M
3300033419\|Ga0316601_101264284	Not Available	741	Open in IMG/M
3300033419\|Ga0316601_102234270	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300033482\|Ga0316627_100179691	Not Available	1601	Open in IMG/M
3300033482\|Ga0316627_100402516	All Organisms → cellular organisms → Bacteria → Proteobacteria	1176	Open in IMG/M
3300033482\|Ga0316627_100714612	Not Available	933	Open in IMG/M
3300033482\|Ga0316627_101904386	Not Available	614	Open in IMG/M
3300033483\|Ga0316629_10651953	All Organisms → cellular organisms → Bacteria → Proteobacteria	790	Open in IMG/M
3300033485\|Ga0316626_10264040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1386	Open in IMG/M
3300033487\|Ga0316630_11994943	Not Available	533	Open in IMG/M
3300033488\|Ga0316621_10098645	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300033488\|Ga0316621_10722411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	722	Open in IMG/M
3300033521\|Ga0316616_100523706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1366	Open in IMG/M
3300033521\|Ga0316616_100583396	Not Available	1308	Open in IMG/M
3300033521\|Ga0316616_101536126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	865	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	54.55%
Terrestrial	Environmental → Terrestrial	45.45%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	53.64%
Soil	Environmental → Terrestrial → Soil	45.45%
Marine	Environmental → Aquatic → Marine	0.91%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	44.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	21.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.18%
Lentic	Environmental → Aquatic → Freshwater → Lentic	13.64%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	44.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	21.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	18.18%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	13.64%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	42.73%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	18.18%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	13.64%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	13.64%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	8.18%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300014306	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300027683	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031656_100062464	3300003858	Freshwater Lake Sediment	MTAPLVVFPFRYKDARTGRWVKARYKAEPAEIAARYAKWEIVGPGEVRRPRKGYFNPGRREGE*
Ga0031656_101696611	3300003858	Freshwater Lake Sediment	PLGMPHATGPFEVFPFRYRDPRTGKWVRARYNATRAEIAARYVEWELTGEGEVRRPAGGGYFNPLRRLDR*
Ga0055491_100328881	3300004050	Natural And Restored Wetlands	MSPARHSLLGMNDTFEVFAFRYRDARTGRWVKARYKATPEEIAARYAEWEILGVGEVRRPIGGYFNPGRREGE*
Ga0079037_1000383543	3300006224	Freshwater Wetlands	MSPGSGRRRSRLLPMMCAPTDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE*
Ga0079037_1000435762	3300006224	Freshwater Wetlands	MPRATGPFEVFPFRYRDPRTGKWVNARYKATPDEIAARYAEWEIVGVGEVRRPVTGYFNPGRREGE*
Ga0079037_1000765032	3300006224	Freshwater Wetlands	MADDPDTFEVFPFRYRDARTGKWTKARYMATREEIAARYAEWEVTGPGEVRRPLGGYFTPGRREGS*
Ga0079037_1002103302	3300006224	Freshwater Wetlands	MTSPLVVYPFRYKDARTGRWVRARYMAERSEIAARYAEWEITGPGEERRPRTGYFNPGRREGE*
Ga0079037_1005022502	3300006224	Freshwater Wetlands	MSPGSGRRRSRLLPMTRAPTDAFAVFPFRYRDARTGKWVKARYMATREEIAARYAEWEVTGPGEVRRPLGGYFNPGRREGS*
Ga0079037_1009748912	3300006224	Freshwater Wetlands	MYDELEVFPFRYRDPRTGKWVRARYLATPDEIATRYAEWELTGPGEIRRPLDKCFNPAGRGEAG*
Ga0079037_1017291441	3300006224	Freshwater Wetlands	MSEPTTSFEVFPFRYRDARTGKWVKARYMASREEIAARYAEWEITDPGEVRTPRTGYFNPGRRQGE*
Ga0079037_1023055032	3300006224	Freshwater Wetlands	MAYELEVFPFRYRDPRTGRWVKARYMATPDEIAARYQEWELTGLGEIRRPLDGYYNPSRSAR*
Ga0105090_100268352	3300009075	Freshwater Sediment	MTSTIEVFPFRYRDARTGKWVKARYKAERAEIAARYAEWEITGPGEERRPSEGYFNPGRREG*
Ga0105090_101641191	3300009075	Freshwater Sediment	MTNTIEVLPFRYRDARAGRWVKARYMATADEIAARYAEWEIIGPGEKRRLIGGYSNPVRRET*
Ga0105090_103334611	3300009075	Freshwater Sediment	MAGEPQTFEVFPFRYRDARTGKWVNARYKAAPDDIAWRYAEWELTGPGEVRRPREGYFNPTGRNR*
Ga0105090_104385351	3300009075	Freshwater Sediment	MTAPTAPLVVFTFRYRDARTGRWVKARYMAERSEIAARYAEWEIIGPGEERRPIAGYFNPGR
Ga0105090_104612602	3300009075	Freshwater Sediment	MADSFEVFPFRYRDARTGRWVKARYKAERNEIAARYAEWEIIGPGEERRPINGYFNPGRREGVS*
Ga0105090_106663521	3300009075	Freshwater Sediment	MTNTIEVFPFRYKDARTARWVKARYKAERTEIAARYAEWEIIGPGEERRPIAGYFNPGRREGE*
Ga0105106_100916893	3300009078	Freshwater Sediment	MAGEPQTFEVFPCRYCDARTGKWVNARYKATPAEIAARYAEWTITGPGEQPRPAEGYFNPLRQPGNV*
Ga0105098_100230151	3300009081	Freshwater Sediment	MAGEPQTFEVFPCRYCDARTGKWVNARYKATPAEIAARYAEWTITGPGEQPRPAEGYFNPLRQPGND*
Ga0105103_101022431	3300009085	Freshwater Sediment	MASTIVVFPFRYRDARTGRWVKARYKAERAEIAARYAEWEITGPGEERRPSEGYFNPGRREG*
Ga0105103_102414002	3300009085	Freshwater Sediment	MTSTIEVFPFRYRDARTGKWVKARYKAERDEIAARYAEWEIIGPGEERRPATGCFNPNRREGE*
Ga0102851_103908663	3300009091	Freshwater Wetlands	MMCAPTDAFCAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE*
Ga0102851_105885401	3300009091	Freshwater Wetlands	MSLARHSALGMTVPIIVYPFQYRDARTGRWVNACYQPTPEEIAARYAEWELTGPGEERRPISGHFNPNRREGE*
Ga0102851_106196203	3300009091	Freshwater Wetlands	MTLVVNPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEERRPRTGYFNPGRREGE*
Ga0102851_117268492	3300009091	Freshwater Wetlands	MTREPTDTFEVFPFRYRDARTGRWVRVRYMATREEIAARYAEWEVTGPGEIRRPLGGYFNPGRKEGS*
Ga0102851_126762912	3300009091	Freshwater Wetlands	MPDTIELFPFRYKDARTGKWVKARYKATRDEIAARYAEWEITGAGEVRTPRAGYF
Ga0102851_131034552	3300009091	Freshwater Wetlands	MTAPTAPLVVFPFRYRDARTGRWVKARYKAERSEIAVRYAEWEIIGPGEERRPIGAYFNPGRREGDL*
Ga0115026_101362922	3300009111	Wetland	MTRAPTDAFAVFPFPYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE*
Ga0115026_109361741	3300009111	Wetland	MADDPDTFEVFPFRYRDARTGRWVRARYMATREEIAARYAEWEVTGPGEIRRPLGGYFNPGRKEGS*
Ga0115026_117638111	3300009111	Wetland	LITLVVYPLRYKDARIGKWVKARYMAGRKEIAARYAEWEITGPGEVRRPRAGYFNPGRREGE*
Ga0115027_110285132	3300009131	Wetland	MTREPTDTFEIFPFRYRDARTGRWVRARYMATREEIAARYAEWEVTGPGEIRRPLGGYFNPGRREGS*
Ga0115027_114721182	3300009131	Wetland	MPDAFEVYAFRYRDARTRKWVKARYKAAPDEIAARYAEWELIGPGEVRCPSTGYFNPLRRVSD*
Ga0105100_104711802	3300009166	Freshwater Sediment	MTSTIEAFPFRYRDARTGRWVKARNKAERDDIAARYAEWEITGPGEVRRPNTGDVNPMRQGDGS*
Ga0113563_102555912	3300009167	Freshwater Wetlands	MSDTFEVFPFRYNDARTGRWLKARYMATREEIAARYAEWEITGPGEVRTPRTGYFNPGRREGE*
Ga0113563_105162652	3300009167	Freshwater Wetlands	MTRAPTDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE*
Ga0113563_107057182	3300009167	Freshwater Wetlands	MSPTEHSLLGMNDTFEVFAFCYRDARTGKWAKARYKATPEEIAARYAEWEILGVGEVRRPIGGYFNPDRREGE*
Ga0113563_112658432	3300009167	Freshwater Wetlands	LITLVVYPFRYKDARIGKWVKARYMAGRKEIAARYAEWEITGPGEVRRPRAGYFNPGRREGE*
Ga0113563_118813622	3300009167	Freshwater Wetlands	MTLVVNPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEVRRPIDGYFNPGRREGE*
Ga0113563_120247882	3300009167	Freshwater Wetlands	MPDTFEVFPFRYRDPRTGRWVNARYKATPDEIAARYAEWELLGPGEERRPSTGYFNPMRRSGE*
Ga0105096_100267313	3300009170	Freshwater Sediment	MAGEPQTFEVFPCRYRDARTGKWVNARYKATPAEIAARYAEWTITGPGEQPRPAEGYFNPLRQPGNV*
Ga0115028_106701301	3300009179	Wetland	MPRATGPFEVFPFRYRDPRTGKWVKARYKATPDEIAARYAEWEIVGVGEVRRPVTGYFNPGRREGE*
Ga0115028_108129771	3300009179	Wetland	MYDELEVFPFRYRDPRTGKWVRARYLATPDEIATRYAEWELTGPGEIRRPLDKCFNPAGRREAG*
Ga0075346_10712892	3300014306	Natural And Restored Wetlands	MPDTFEVYAFRYRDSRTGKWVKARYKATPEEIAARYAEWEILGVGEVRRPIGGYFNPGRREGE*
Ga0075348_11417332	3300014319	Natural And Restored Wetlands	MPATIEVFPFRYRDARTGKWVKARYMATREEIAARYAKWEVTGPGEVRRPLGGYFNPGRREGE*
Ga0209392_10862441	3300027683	Freshwater Sediment	MAGEPQTFEVFPCRYCDARTGKWVNARYKATPAEIAARYAEWTITGPGEQPRPAEGYFNPLRQPGNV
Ga0209397_100912102	3300027871	Wetland	SRLLPMMCAPTDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE
Ga0209450_100114082	3300027885	Freshwater Lake Sediment	MAYELELFPFRYRDPRTGRWVKARYMATPDEIAARYRERELTGPGEIRRPLDGYFNPAGRVGSG
Ga0209450_110872091	3300027885	Freshwater Lake Sediment	MPDTFEVFPFRYRDARTGRWVKARYKATPDEIAARYTEWELIGPGEVRRPSTGYFNPMRRVGE
Ga0209496_101755521	3300027890	Wetland	MSPGSGRRRSRLLPMMCAPTDAFCAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE
Ga0209254_100496852	3300027897	Freshwater Lake Sediment	MTSPIVVYPFRYKDARTGRWVKARYMAERSEIAARYAEWEITGPGEERRPRTG
Ga0209254_100497447	3300027897	Freshwater Lake Sediment	MPHATGPFEVFPFRYRDPRTGKWVRARYNATRAEIAARYVEWELTGEGEVRRPAGGGYFNPLRRLDR
Ga0209254_100538593	3300027897	Freshwater Lake Sediment	MANANDTFEVFPFRYRDPRTGKWVRARYKATREDIAARYVEWELTGEGEVRRPLDGGYFNPHRGTGG
Ga0209254_101033262	3300027897	Freshwater Lake Sediment	MIVPLVVFPFRYRDARTGRWVKARYKAERDEIAARYAEWEIVGPGEERRPATGYFDPHRGKGE
Ga0209254_101185074	3300027897	Freshwater Lake Sediment	MTAPLVVFPFRYKDARTGRWVKARYKAEPAEIAARYAKWEIVGPGEVRRPRKGYFNPGRREGE
Ga0209254_101223651	3300027897	Freshwater Lake Sediment	VVFPFRYKDARTGRWVEARYKATREEIAARYAEWEVTGPGEVRTPHVGYFNPGRREGE
Ga0209254_103304362	3300027897	Freshwater Lake Sediment	MPHATGPFEVFPFRYRDPRTGKWVRARYKATREEIAARYVEWELTGEGEVRRPAGGGYFNPLRRSEG
Ga0209254_104315732	3300027897	Freshwater Lake Sediment	MPDTFEVFPFRYRDPRTGRWVNARYKATPDEIAARYAEWELLGPGEERRPSTGYFNPMRRSGE
Ga0209254_105110981	3300027897	Freshwater Lake Sediment	MTAPTVPLVVFPFRYRDARTGRWVKARYKAERTEIAARYAEWEITGPGEERRPIGGYFNPGRREGE
Ga0209254_107102961	3300027897	Freshwater Lake Sediment	TEVFPFRYRDARTKRWVKARYKAERDEIAARYAEWEIVGPGEERRPIGGYFNPGRRENG
Ga0209254_109019051	3300027897	Freshwater Lake Sediment	MTAPLVVFPFRYKDARTGRWVKARYKAEPAEIAARYAEWEIIGPSEERRPIGGDFN
Ga0209391_100340701	3300027975	Freshwater Sediment	MAGEPQTFEVFPFRYRDARTGKWVNARYKAAPDDIAWRYAEWELTGPGEVRRPREGYFNPTGRNR
Ga0209391_102730042	3300027975	Freshwater Sediment	MADSFEVFPFRYRDARTGRWVKARYKAERNEIAARYAEWEIIGPGEERRPINGYFNPGRREGVS
Ga0306920_1035422291	3300032261	Soil	MAIELFPFRYRDRLTGRWVRARYKATREEIAATGYAEWEITGPSEIRDPQTGGRYFHPFPIMSHAEL
Ga0316605_100999042	3300033408	Soil	MTLVVNPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEVRRPIDGYFNPGRREG
Ga0316605_101594831	3300033408	Soil	LITLVVYPFRYKDARIGKWVKARYMAGRKEIAARYAEWEITGPGEVRRPRAGYFNPGRREGE
Ga0316605_102352202	3300033408	Soil	MSPGSGRRRSRLLPMMCAPTDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE
Ga0316605_103845582	3300033408	Soil	MPRATGPFEVFPFRYRDPRTGKWVNARYKATPDEIAARYAEWEIVGVGEVRRPVTGYFNPGRREGE
Ga0316605_107337612	3300033408	Soil	MTRAPTDAFAVFPFPYRDARTGKWVKARYMATREEIASRYGEWEITGPGKVRTPRIGYFNPGRREGE
Ga0316605_108333291	3300033408	Soil	MSEPTTSFEVFPFRYRDARTGKWVKARYMASREEIAARYAEWEITDPGEVRTPRTGYFNPGRRQGE
Ga0316605_110474292	3300033408	Soil	MADDPDTFEVFPFRYRDARTGKWTKARYMATREEIAARYAEWEVTGPGEVRRPLGGYFTPGRREGS
Ga0316605_111422781	3300033408	Soil	RGAMPDTFEVFPFRYRDPRTGRWVKARYKATPDEIAARYAEWELIGPGEVRRPSTGYFNPMRRDGK
Ga0316605_120355172	3300033408	Soil	VPHATGSFEVFPFRYRDPRKGKWVCARYKATRAEIAARYVEWELTGEGEVRRPAGGGYFNPLRRSEG
Ga0316605_121344421	3300033408	Soil	MPGRLVVFPFRYKDAQTGKWVKARYMAERSEIAAPYADWEITGPGEERRPIGGYFNPGTRERD
Ga0316605_123108891	3300033408	Soil	MTAPTAPLVVFPFRYRDARTGRWVKARYKAERSEIAVRYAEWEIIGPGEERRPRTGYFNPGRREGK
Ga0316605_124323291	3300033408	Soil	MPDTFEVFPFRYGDPRTGRWVNARYKATPDEIAARYAEWELLGPGEERRPSTRYFIAMRRSGE
Ga0316603_105764503	3300033413	Soil	VVYPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEVRRPIDGYFNPGRREGE
Ga0316603_107793491	3300033413	Soil	MPDAFEVYAFRYRDARTRKWVKARYKAAPDEIAARYAEWELIGPGEVRCPSTGYFNPLRRVSD
Ga0316603_107993352	3300033413	Soil	MPDTFEVFPFRYRDPRTGKWVKARYKATPDEIAARYAEWEIAGRGEERRPIGGYFNPGRREGE
Ga0316603_108233351	3300033413	Soil	MSDSFEVFPFRYKDTRTGRWVKARYMATREEIAARYDVWEITGPGEVRRPRSGYFN
Ga0316603_115310431	3300033413	Soil	MAYELEVFPFRYRDPRTGRWVKARYMATPDEIAARYQEWELTGLGEIRRPLDGYYNPSRSAR
Ga0316603_118161611	3300033413	Soil	FVVSPFRSGNPRSGRWVKARYKPTSDEIAAHYQVWGLIGPGEVRRPSAGYFTPMRRAGE
Ga0316619_102419972	3300033414	Soil	APTDAFCAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE
Ga0316619_105642552	3300033414	Soil	MTLVVNPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEERRPRTGYFNPGRREG
Ga0316619_110276142	3300033414	Soil	RRFVVSPFRSGNPRSGRWVKARYKPTSDEIAAHYQVWGLIGPGEVRRPSAGYFTPMRRAG
Ga0316622_1000832911	3300033416	Soil	IVYPFQYRDARTGRWVNACYQPTPEEIAARYAEWELTGPGEERRPISGHFNPNRREGE
Ga0316622_1003656082	3300033416	Soil	MYDELEVFPFRYRDPRTGKWVRARYLATPDEIATRYAEWELTGPGEIRRPLDKCFNPAGRGEAG
Ga0316622_1003996663	3300033416	Soil	MTREPPDTIELFPFRYKDARTGRWVKARYMATREEIAARYAEWEVTGPGEVRTPRTGYFNPGRREGDL
Ga0316622_1004500822	3300033416	Soil	MLETFEVFPFRYRDQRTGRWVKARYKATPAEIAARYTEWELIGPSEVRRPSAGYFNPMRRVSE
Ga0316622_1009894853	3300033416	Soil	MPTTIELFPFRYRDPRTGKWVRARYMATREEIAARYAELEIIGSGELRRPRTGYFNPGRREGE
Ga0316622_1019609912	3300033416	Soil	MPDTIELFPFRYKDARTGKWVKARYKATRDEIAARYAEWEITGAGEVRTPRAGYFNPNRREGE
Ga0316622_1024629581	3300033416	Soil	MSPGSGRRRSRLLPMTHAATDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVR
Ga0316625_1011318533	3300033418	Soil	MTLVVYPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEERRPRTGYFNPGRREG
Ga0316625_1025441071	3300033418	Soil	MTPGPTDNFEVFPFRYTDARTGKCVKARYKATHEEIAARYAEREITGPGEVRTPRTGYFNPGRQPSNR
Ga0316601_1003931401	3300033419	Soil	MSLATHRLRCMADDPDTFEVFPFRYRDARTGKWTKARYMATREEIAARYAEWEVTGPGEVRRPLGGYFTPGRRQGS
Ga0316601_1004436573	3300033419	Soil	MTLVVYPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEVRRPIDGYFNPGRREG
Ga0316601_1006986503	3300033419	Soil	MSEPTTSFEVFPFRYRDARTGKWVRARYMATRDEIAVRYAEWEITGPGEVRTPRTGHFNPGRREGE
Ga0316601_1012642842	3300033419	Soil	MRREPTDTFEVFPFRYKDARTGKWVKARYMASRDEIAARYTEWEVIGPGEVR
Ga0316601_1022342701	3300033419	Soil	MTREPTDTFEVFPFRYRDARTGKWVKARYMATREEIAARYAEWEVTGPGEVRRPLGGYFNPGRREGA
Ga0316627_1001796913	3300033482	Soil	MSPGSGRRRSRLLPMTRAATDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGEVRTPRTGYFNPGRREGE
Ga0316627_1004025162	3300033482	Soil	MSEPTTSFEVFPFRYRDARTGKWVRSRYMATRDEIAVWYAEWEITGPGEVRTPRTGHFNPGRREGE
Ga0316627_1007146121	3300033482	Soil	MSPARHSLLGMNDTFEVFAFCYRDARTGKWAKARYKATPEEIAARYAEWEILGVGEVRRPIGGYFNPDRREGE
Ga0316627_1019043861	3300033482	Soil	MYDELEVFPFRYRDPRTGKWVRARYLVTPDEIATRYAEWELTGPGEIRRPLDKCFNPAGRGEAG
Ga0316629_106519531	3300033483	Soil	MTLVVYPFRYKDARTGRWIKARYKAERTEIAARYAEWEIIGPGEERRPVAGYFNPGRREG
Ga0316626_102640403	3300033485	Soil	MSPGSGRRRSRLLPMMCAPTDAFAVFPFRYRDARTGKWVKARYMATREEIASRYGEGEITGPGEVRTPRTGYFNPGRREGE
Ga0316630_119949431	3300033487	Soil	AGMYDELEVFPFRYRDPRTVKWVRARYLATPDEIATRYAEWELTGPGEIRRPLDKCFNPAGRGEAG
Ga0316621_100986452	3300033488	Soil	MTVPIIVYPFQYRDARTGRWVNACYQPTPEEIAARYAEWELTGPGEERRPISGHFNPNRREGE
Ga0316621_107224112	3300033488	Soil	VFPFHYKDARTGRRVKARYKATREEIAARYAEWEITGPGEVRTPLGGYFNPGRQPGNR
Ga0316616_1005237061	3300033521	Soil	TLVVNPFRYKDARTGRWVKARYKADRTEIAARYAEWEIIGPGEVRRPIDGYFNPGRREGE
Ga0316616_1005833963	3300033521	Soil	MPRATGPFEVFPFRYRDPRTGKWVNARYKATPDEIAARYAEWEIVGVGEVRRPVTGYFNP
Ga0316616_1015361262	3300033521	Soil	MTRAATDAFALFPFRYRDARTGKWVKARYMATREEIASRYGEWEITGPGKVRTPRIGYFNPGRREGE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087400

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences