Metagenome / Metatranscriptome Family F087398

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087398
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	53 residues
Representative Sequence	ARIETQFLTPVQLPARVAIKEWTAEGQTKRALCDVRTGRVHMYAWW
Number of Associated Samples	78
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	90.91 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (22.727 % of family members)
Environment Ontology (ENVO)	Unclassified (39.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (31.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 35.14% Coil/Unstructured: 64.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04972	BON	73.64
PF03109	ABC1	5.45
PF00884	Sulfatase	1.82
PF12787	EcsC	0.91
PF00106	adh_short	0.91
PF13350	Y_phosphatase3	0.91
PF05299	Peptidase_M61	0.91
PF13011	LZ_Tnp_IS481	0.91
PF12833	HTH_18	0.91
PF04214	DUF411	0.91
PF13683	rve_3	0.91
PF01546	Peptidase_M20	0.91
PF00274	Glycolytic	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	5.45
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.91
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	0.91
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	0.91
COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.73 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	64.55 %
Unclassified	root	N/A	10.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	63.64 %
Unclassified	root	N/A	10.00 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	63.64 %
Unclassified	root	N/A	10.00 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	63.64 %
Unclassified	root	N/A	10.00 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104523057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	702	Open in IMG/M
3300001213\|JGIcombinedJ13530_107547058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	647	Open in IMG/M
3300001213\|JGIcombinedJ13530_108653687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	767	Open in IMG/M
3300004012\|Ga0055464_10256551	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300004073\|Ga0055516_10145203	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300004114\|Ga0062593_101621512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	703	Open in IMG/M
3300004282\|Ga0066599_101011801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
3300004282\|Ga0066599_101261446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	555	Open in IMG/M
3300005366\|Ga0070659_100364893	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300005832\|Ga0074469_10234503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	586	Open in IMG/M
3300005843\|Ga0068860_102453921	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005956\|Ga0073920_1037677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	621	Open in IMG/M
3300006224\|Ga0079037_100135683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2132	Open in IMG/M
3300006224\|Ga0079037_100171897	All Organisms → cellular organisms → Bacteria → Proteobacteria	1919	Open in IMG/M
3300006853\|Ga0075420_101280379	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300006880\|Ga0075429_101511434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	584	Open in IMG/M
3300009075\|Ga0105090_10657376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	636	Open in IMG/M
3300009075\|Ga0105090_10692680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	619	Open in IMG/M
3300009085\|Ga0105103_10453012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	715	Open in IMG/M
3300009087\|Ga0105107_10315191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1090	Open in IMG/M
3300009091\|Ga0102851_11288349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	807	Open in IMG/M
3300009111\|Ga0115026_10207939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1311	Open in IMG/M
3300009131\|Ga0115027_10934961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	673	Open in IMG/M
3300009147\|Ga0114129_11628534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	789	Open in IMG/M
3300009157\|Ga0105092_10118896	All Organisms → cellular organisms → Bacteria → Proteobacteria	1457	Open in IMG/M
3300009165\|Ga0105102_10147750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1143	Open in IMG/M
3300009167\|Ga0113563_10014680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5690	Open in IMG/M
3300009167\|Ga0113563_10525308	All Organisms → cellular organisms → Bacteria → Proteobacteria	1296	Open in IMG/M
3300009167\|Ga0113563_10908291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1006	Open in IMG/M
3300009167\|Ga0113563_12505334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	622	Open in IMG/M
3300009167\|Ga0113563_13976629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	501	Open in IMG/M
3300009169\|Ga0105097_10023419	All Organisms → cellular organisms → Bacteria	3272	Open in IMG/M
3300009169\|Ga0105097_10159683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1240	Open in IMG/M
3300009169\|Ga0105097_10353569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	814	Open in IMG/M
3300009169\|Ga0105097_10505102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	676	Open in IMG/M
3300009170\|Ga0105096_10043728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2205	Open in IMG/M
3300009170\|Ga0105096_10326799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	785	Open in IMG/M
3300009506\|Ga0118657_11895565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	691	Open in IMG/M
3300009755\|Ga0115592_1046182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	830	Open in IMG/M
3300010354\|Ga0129333_11542613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	543	Open in IMG/M
3300011412\|Ga0137424_1071696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	675	Open in IMG/M
3300014267\|Ga0075313_1072322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	827	Open in IMG/M
3300014305\|Ga0075349_1146153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	551	Open in IMG/M
3300014316\|Ga0075339_1106476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	747	Open in IMG/M
3300014319\|Ga0075348_1215644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	536	Open in IMG/M
3300014319\|Ga0075348_1255194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	503	Open in IMG/M
3300014322\|Ga0075355_1042872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	989	Open in IMG/M
3300015258\|Ga0180093_1006663	All Organisms → cellular organisms → Bacteria → Proteobacteria	2150	Open in IMG/M
3300019210\|Ga0179938_1085535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	819	Open in IMG/M
3300023261\|Ga0247796_1043278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	766	Open in IMG/M
3300025555\|Ga0210121_1005385	All Organisms → cellular organisms → Bacteria → Proteobacteria	2435	Open in IMG/M
3300025925\|Ga0207650_11168308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	655	Open in IMG/M
3300025932\|Ga0207690_10560409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	929	Open in IMG/M
3300025968\|Ga0210103_1031170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	904	Open in IMG/M
3300026075\|Ga0207708_11889286	Not Available	523	Open in IMG/M
3300026375\|Ga0256803_1006173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1029	Open in IMG/M
3300026752\|Ga0207473_101227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	777	Open in IMG/M
3300027693\|Ga0209704_1207296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	572	Open in IMG/M
3300027715\|Ga0208665_10162468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	700	Open in IMG/M
3300027715\|Ga0208665_10234962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	576	Open in IMG/M
3300027721\|Ga0209492_1059739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1346	Open in IMG/M
3300027721\|Ga0209492_1189934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	708	Open in IMG/M
3300027723\|Ga0209703_1287613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	585	Open in IMG/M
3300027818\|Ga0209706_10430639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	610	Open in IMG/M
3300027871\|Ga0209397_10354693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	711	Open in IMG/M
3300027899\|Ga0209668_10009627	All Organisms → cellular organisms → Bacteria → Proteobacteria	4491	Open in IMG/M
3300027902\|Ga0209048_10073475	All Organisms → cellular organisms → Bacteria → Proteobacteria	2703	Open in IMG/M
3300027975\|Ga0209391_10038962	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300028647\|Ga0272412_1364621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	574	Open in IMG/M
3300031547\|Ga0310887_10629459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	660	Open in IMG/M
3300031562\|Ga0310886_10279897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	945	Open in IMG/M
3300031908\|Ga0310900_11017007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	682	Open in IMG/M
3300032002\|Ga0307416_102920124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	572	Open in IMG/M
3300032177\|Ga0315276_10060725	All Organisms → cellular organisms → Bacteria → Proteobacteria	3743	Open in IMG/M
3300032397\|Ga0315287_10394651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1639	Open in IMG/M
3300032397\|Ga0315287_12385193	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300032516\|Ga0315273_12138367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	659	Open in IMG/M
3300032516\|Ga0315273_12437731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
3300033406\|Ga0316604_10513608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	659	Open in IMG/M
3300033408\|Ga0316605_10891492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	850	Open in IMG/M
3300033408\|Ga0316605_11653905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	622	Open in IMG/M
3300033408\|Ga0316605_12425044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	510	Open in IMG/M
3300033413\|Ga0316603_10397904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1244	Open in IMG/M
3300033413\|Ga0316603_10532283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1082	Open in IMG/M
3300033414\|Ga0316619_10110638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1788	Open in IMG/M
3300033414\|Ga0316619_10452927	All Organisms → cellular organisms → Bacteria → Proteobacteria	1032	Open in IMG/M
3300033414\|Ga0316619_10811673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	800	Open in IMG/M
3300033419\|Ga0316601_101063164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	809	Open in IMG/M
3300033434\|Ga0316613_11010392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	572	Open in IMG/M
3300033481\|Ga0316600_10349716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1005	Open in IMG/M
3300033481\|Ga0316600_10679473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	722	Open in IMG/M
3300033481\|Ga0316600_10706808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	708	Open in IMG/M
3300033481\|Ga0316600_11248766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	527	Open in IMG/M
3300033482\|Ga0316627_100319656	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300033483\|Ga0316629_10354777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1015	Open in IMG/M
3300033483\|Ga0316629_10479971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	898	Open in IMG/M
3300033557\|Ga0316617_100558346	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300033557\|Ga0316617_101078370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	790	Open in IMG/M
3300033557\|Ga0316617_101508541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	678	Open in IMG/M
3300034690\|Ga0364923_0118603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	675	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.27%
Host-Associated	Host-Associated	10.91%
Engineered	Engineered	1.82%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	46.36%
Terrestrial	Environmental → Terrestrial	40.91%
Plants	Host-Associated → Plants	10.91%
Wastewater	Engineered → Wastewater	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.18%
Freshwater	Environmental → Aquatic → Freshwater	36.36%
Marine	Environmental → Aquatic → Marine	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.64%
Sediment	Environmental → Aquatic → Sediment	2.73%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.82%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.91%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.91%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	29.09%
Sediment	Environmental → Aquatic → Freshwater → Sediment	20.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.27%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.36%
Lake	Environmental → Aquatic → Freshwater → Lake	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.73%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.82%
Pond	Environmental → Aquatic → Freshwater → Pond	1.82%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.82%
Coastal	Environmental → Aquatic → Marine → Coastal	0.91%
Loam	Environmental → Terrestrial → Soil → Loam	0.91%
Sand	Environmental → Terrestrial → Soil → Sand	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	29.09%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	20.00%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.27%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.55%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.82%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	1.82%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	22.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	16.36%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	7.27%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	6.36%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.55%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	3.64%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.73%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	1.82%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.91%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.91%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.91%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.91%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004012	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D2	Environmental	Open in IMG/M
3300004073	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_CordB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005956	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_23-Sept-14	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009755	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_11_14_B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014305	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1	Environmental	Open in IMG/M
3300014316	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLC_D1	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019210	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Illinois, USA ? AD_UKC030_MetaT (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025555	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025968	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026375	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS6	Environmental	Open in IMG/M
3300026752	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes)	Environmental	Open in IMG/M
3300027693	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027721	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027818	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028647	Metatranscriptome of activated sludge microbial communities from WWTP in Nijmegen, Gelderland, Netherland - WWTP Weurt (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1045230571	3300000364	Soil	LTPGIKVDTDFLTPVQLPAKVTVKQWTEAGRVKRALCDVRTGRVHMYAHWNGA*
JGIcombinedJ13530_1075470582	3300001213	Wetland	AQLHTQFLTPVQLPARVNIKQWSEEGVVKRAMCDVRTGRVHMYAHWA*
JGIcombinedJ13530_1086536872	3300001213	Wetland	GVRIDTQFLTPVQLPARVAIKDWVADGQRRRALCDKRTGRLHMYSSWAADPAAT*
Ga0055464_102565511	3300004012	Natural And Restored Wetlands	PAPDLPNGVRIDTQFLTPVQLPARVAIKEWTADGRSQRALCDVRTGRVHMCSAWSAWTAAS*
Ga0055516_101452031	3300004073	Natural And Restored Wetlands	YGPGTRIDAQFLTPVQLPAKVAVKEWREEGQVKRALCDVRTGRVHMYACWAA*
Ga0062593_1016215121	3300004114	Soil	FLSPVQLPARVAIKEWKADGEVRRALCDVRTGRVHMYAWWASA*
Ga0066599_1010118012	3300004282	Freshwater	TPVQLPGRVAIREWTAEGQVQRALCDVRTGRVHMVAWWVSPARVIPAAGSGH*
Ga0066599_1012614462	3300004282	Freshwater	PGGAVIGTQFLSPVQLPGRVAIKEWSDEGQVKRALCDVRTGRVHMYVWWDAVTPPA*
Ga0065712_100359483	3300005290	Miscanthus Rhizosphere	LNGQGVLETEFLTPVQLPGRVTVKQWAVEGRTHRALCDVRTGRVHMYARWGQTANQA*
Ga0070659_1003648933	3300005366	Corn Rhizosphere	PTIPATPARIETQFLTPVQLPAKVAIKEWTSDGAVRRALCDVRTGRVHMYAWWAPD*
Ga0070662_1003485682	3300005457	Corn Rhizosphere	GEGVLETEFLTPVQLPGKVAVKQWPVEGGTHRALCDVRTGRVHMYARWGRTA*
Ga0068867_1016580852	3300005459	Miscanthus Rhizosphere	GVLETEFLTPVQLPGKVTVKQWSVEGRTHRALCDVRTGRVHMYARWGRTA*
Ga0074469_102345031	3300005832	Sediment (Intertidal)	APDVPRGTPIHTQFLTPVQLPGRVAVKEWVADGQVRRALCDIRTGRVHMYAWWGAVTPPA
Ga0068860_1024539211	3300005843	Switchgrass Rhizosphere	PTTPATPARIETQFLTPVQLPAKVAIKEWTSDGAVRRALCDVRTGRVHMYAWWAPD*
Ga0073920_10376771	3300005956	Sand	PVQLPARVAIKEWTAEGQHRRALCDTRTGRVHMYAWWPAGISTT*
Ga0079037_1001356831	3300006224	Freshwater Wetlands	LTPVQLPARVAIKEWTAEGQRRRALCDIRTGRVHMYAFWPEASAPA*
Ga0079037_1001718971	3300006224	Freshwater Wetlands	QFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTRA*
Ga0075420_1012803792	3300006853	Populus Rhizosphere	TTPATPARIETQFLTPVQLPAKVAIKEWTSDGAVRRALCDVRTGRVHMYAWWAPD*
Ga0075429_1015114341	3300006880	Populus Rhizosphere	GPSSPARVETQFLTPVQLPARVAIRQWIADGHVRRALCDVRTGRVHMYAWWAPPA*
Ga0105090_106573761	3300009075	Freshwater Sediment	PVIPHGVRIETQFLTPVQLPARVAIKEWRAEGQVKRALCDIRTGRVHMVAWWNDVIPA*
Ga0105090_106926801	3300009075	Freshwater Sediment	VRIETQFLTPVQLPARVAIKEWRAEGQVKRALCDIRTGRVHMVAWWDDVIPA*
Ga0105103_104530121	3300009085	Freshwater Sediment	LTPVQLPARVAIKEWRAEGQVKRALCDIRTGRVHMVAWWDDVIPA*
Ga0105107_103151913	3300009087	Freshwater Sediment	PHGARIETQFLSPVQLPARVAVKEWTADGQTKRALCDVRTGRVHMYAWWEAVIPA*
Ga0102851_112883492	3300009091	Freshwater Wetlands	IPAGVTIGTQFLTPVQLPAKVAVKEWREQGDVKRALCDVRTGRVHMYAWWPEAGQG*
Ga0115026_102079393	3300009111	Wetland	GTQFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA*
Ga0115027_109349611	3300009131	Wetland	FLTPVQLPAKVAVKEWREQGDVKRALCDVRTGRVHIYAWWPEAGQG*
Ga0114129_116285342	3300009147	Populus Rhizosphere	AIETQFLTPVQLPARVAIKEWKADGHVRRALCDVRTGRVHMYAWWASD*
Ga0105092_101188961	3300009157	Freshwater Sediment	PPAPAIPARIETQFLTPVQLPARVAIKQWTADGQVRRALCDVRTGRVHMYAWWASA*
Ga0105102_101477503	3300009165	Freshwater Sediment	TQFLTPVQLPARVAIKEWTAEGQTKRALCDVRTGRVHMYAWWDEISRPA*
Ga0113563_100146801	3300009167	Freshwater Wetlands	TQFLTPVQLPARVAIKEWTAEGQVNRALCNVRTGRVHMFANWSTAPGVSAA*
Ga0113563_105253083	3300009167	Freshwater Wetlands	SPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA*
Ga0113563_109082911	3300009167	Freshwater Wetlands	PDCARIDTQFLTPVQLPARVAIKEWSAEGQRRRALCDIRTGRVHMFAYWPEEPAAV*
Ga0113563_125053341	3300009167	Freshwater Wetlands	QFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTQA*
Ga0113563_139766292	3300009167	Freshwater Wetlands	VIPAGVTIGTQFLTPVQLPAKVAVKEWREQGDVKRALCDVRTGRVHMYAWWPEAGQG*
Ga0105097_100234191	3300009169	Freshwater Sediment	LTPVQLPARVAIKEWRAEGQVKRALCDVRTGRVHMVAWWDDVIPA*
Ga0105097_101596831	3300009169	Freshwater Sediment	TQFLTPVQLPARVAIKEWRAEGQVKRALCDIRTGRVHMVAWWDDVIPA*
Ga0105097_103535693	3300009169	Freshwater Sediment	ARIETQFLTPVQLPARVAIKEWTAEGQTKRALCDVRTGRVHMYAWW*
Ga0105097_105051022	3300009169	Freshwater Sediment	GAVIGTQFLSPVQLPGRVAIKEWSDEGQVKRALCDLRTGRVHMYVWWDAVTPA*
Ga0105096_100437281	3300009170	Freshwater Sediment	TQFLSPVQLPARVAVKEWSEEGQVKRALCDVRTGRVHMYVWWSAVTPA*
Ga0105096_103267992	3300009170	Freshwater Sediment	AVIGTQFLSPVQLPGRVAIKEWSDEGQVKRALCDLRTGRVHMYVWWDAVTPPA*
Ga0118657_118955652	3300009506	Mangrove Sediment	DTQFLTPVQLPARVAVKEWTEEGKVRRALCDVRTGRVHMYAWWDAVTRPA*
Ga0115592_10461821	3300009755	Wetland	PRGTRIETQFLTPVQMPARVAIKEWVAEGNKKRALCDVRTGRVHMYAWW*
Ga0129333_115426131	3300010354	Freshwater To Marine Saline Gradient	PLPAIPRGALIETQFLSPVQLPARVAVKEWTADGQKKRALCDVRTGRVHMYAWWSEPLNSA*
Ga0137424_10716962	3300011412	Soil	SMALEPSPTMPTRIETQFLSPVQLPARVAIKEWKADGEVRRALCDVRTGRVHMYAWWAST
Ga0164298_103030731	3300012955	Soil	EGVLETEFLTPVQLPGKVTVKQWVVEGRTHRALCDVRTGRVHMYARWGRTANQA*
Ga0075313_10723222	3300014267	Natural And Restored Wetlands	SLAVGPDLPLPARIETQFLTPVQLPARVAIKQWPAEGQTHRALCDIRTGRVHMHAWWAAP
Ga0075349_11461532	3300014305	Natural And Restored Wetlands	VKIETQFLTPVQLPARVAIKEWSADGQCRRALCDIRTGRLHMYSAWPAGMAAT*
Ga0075339_11064761	3300014316	Natural And Restored Wetlands	IETQFLTPVQLPARVAIKEWSADGQRSRALCDIRTGRLHMYSAWPTGAAAT*
Ga0075339_12124471	3300014316	Natural And Restored Wetlands	SLAGAPAPDVPRGTPIHTQFLTPVQLPGRVAVKEWVADGQVRRALCDIRTGRVHMYAWWGAVTPPA*
Ga0075348_12156442	3300014319	Natural And Restored Wetlands	VIGTQFLSPVQLPGRVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA*
Ga0075348_12551941	3300014319	Natural And Restored Wetlands	KIETQFLTPVQLPARVAIKEWSADGQRSRALCDIRTGRLHMYSAWPTGAAAT*
Ga0075355_10428722	3300014322	Natural And Restored Wetlands	VLGRGVRIDTQFLTPVQLPARVAIKDWVADGQRRRALCDKRTGRLHMYSSWAADPAAT*
Ga0180093_10066635	3300015258	Soil	PTRIETQFLSPVQLPARVAIKEWNADGEVRRALCDVRTGRVHMYAWWAST*
Ga0163161_113662772	3300017792	Switchgrass Rhizosphere	EGVLETEFLTPVQLPGKVTVKQWVVEGRTHRALCDVRTGRVHMYARWGRTANQA
Ga0179938_10855351	3300019210	Anaerobic Digestor Sludge	LTPVQLPARVVIREWAEQGQKKRALCDLRTGRVHMYAWWDEVSPQA
Ga0247796_10432781	3300023261	Soil	RIETQFLTPVQLPAKVAIKEWTADGAVRRALCDVRTGRVHMYAWWAPD
Ga0210121_10053851	3300025555	Natural And Restored Wetlands	PDLPNGVRIDTQFLTPVQLPARVAIKEWTADGRSQRALCDVRTGRVHMCSAWSAWTAAS
Ga0207650_111683082	3300025925	Switchgrass Rhizosphere	FLTPVQLPGKVTVKQWVVEGRTHRALCDVRTGRVHMYARWGQTANQA
Ga0207690_105604093	3300025932	Corn Rhizosphere	RSLALPTIPATPARIETQFLTPVQLPAKVAIKEWTSDGAVRRALCDVRTGRVHMYAWWAP
Ga0210103_10311701	3300025968	Natural And Restored Wetlands	PMAAIPRGAVIGTQFLSPVQLPGRVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA
Ga0207708_118892862	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VLETEFLTPVQLPGKVAVKQWPVEGGTHRALCDVRTGRVHMYARWGRTA
Ga0256803_10061731	3300026375	Sediment	IPQGATIGTQFLSPVQLPAKVAVKAWREQGEMKRALCDVRTGRVHMYAWWPEAGQG
Ga0207473_1012271	3300026752	Soil	PARIETQFLTPVQLPAKVAIKEWTADGAVRRALCDVRTGRVHMYAWWASD
Ga0209704_12072961	3300027693	Freshwater Sediment	AVIPGGAVIGTQFLSPVQLPGRVAIKEWSDEGQVKRALCDLRTGRVHMYVWWDAVTPA
Ga0208665_101624681	3300027715	Deep Subsurface	FLTPVQLPARVAIKEWSAEGQRRRALCDIRTGRVHMFAYWPEEPAAV
Ga0208665_102349621	3300027715	Deep Subsurface	TIPRGTRIETQFLTPVQLPARVAIKEWVAEGNKKRALCDVRTGRVHMYAWW
Ga0209492_10597393	3300027721	Freshwater Sediment	IPHGTVIGTQFLSPVQLPARVAIKEWSEEGQRKRALCDVRTGRVHMYVWWDEVTQPA
Ga0209492_11899342	3300027721	Freshwater Sediment	FLSPVQLPGRVAIKEWSDEGQVKRALCDLRTGRVHMYVWWDAVTPA
Ga0209703_12876131	3300027723	Freshwater Sediment	LPEIPRGARIETQFLTPVQLPARVAVKEWVAERQTKRALCDLRTGRVHMYAWWDGISQPA
Ga0209706_104306391	3300027818	Freshwater Sediment	RGARIETQFLSPVQLPARVAVKEWTADGQTKRALCDVRTGRVHMYAWWEAVIPA
Ga0209397_103546932	3300027871	Wetland	AAIPLGTVIGTQFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA
Ga0209668_100096271	3300027899	Freshwater Lake Sediment	AIPRGTRIETQFLTPVQLPGRVVIREWAEEGKNKRALCDLRTGRVHMYAWWDEVSRPA
Ga0209048_100734751	3300027902	Freshwater Lake Sediment	TASGPRLEAQFLTPVQLPAKVTIKEWNEEGHLRRAMCDVRTGRVHMYASWAPVSRVRPGVAA
Ga0209391_100389621	3300027975	Freshwater Sediment	QAPIPAIPRGARIDTQFLSPVQLPARVAVKEWTADGQTKRALCDVRTGRVHMYAWWG
Ga0272412_13646212	3300028647	Activated Sludge	ETQFLTPVQLPGRVCIKQWSEDGVARRALCDVRTGRVHMIACWQD
Ga0310887_106294591	3300031547	Soil	QFLTPVQLPAKVAIKEWTADGAVRRALCDVRTGRVHMYAWWAPD
Ga0310886_102798973	3300031562	Soil	IETQFLTPVQLPARVAIKEWTADGAVRRALCDVRTGRVHMYAWWASD
Ga0310900_110170072	3300031908	Soil	LALPTTPATPARIETQFLTPVQLPAKVAIKEWTSDGAVRRALCDVRTGRVHMYAWWAPD
Ga0307416_1029201242	3300032002	Rhizosphere	LETQFLTPVQLPARVTVKEWLEDGTARRAMCDVRTGRVHMVAFWK
Ga0315276_100607255	3300032177	Sediment	PVGTRIETQFLTPVQLPARVAIKEWTAEGQRRRALCDTRTGRVHMYAWWPADTATT
Ga0315287_103946513	3300032397	Sediment	PVLGIGTRIETQFLTPVQLPARVAIKEWTAEGHHRRALCDTRTGKVHMYAWWPAGAATA
Ga0315287_123851932	3300032397	Sediment	ARLDTQFLTPVQLPAKVTVKQWEEAGGSRRAMCDVRTGRVHMYAHWQ
Ga0315273_121383671	3300032516	Sediment	IETQFLTPVQLPARVAIKEWTAEGQHRRALCDTRTGKVHMYAWWPADVSTT
Ga0315273_124377313	3300032516	Sediment	QDPVPVIPVGTRIETQFLTPVQLPARVAIKEWTTEGQHRRALCDTRTGRVHMYAWWPADIAAT
Ga0316604_100204856	3300033406	Soil	LTPVQMPARVAIKEWVAEGNKKRALCDVRTGRVHMYAWW
Ga0316604_105136081	3300033406	Soil	PAGVTIGTQFLTPVQLPAKVAVKEWREQGDVKRALCDVRTGRVHMYAWWPEAGQG
Ga0316605_108914922	3300033408	Soil	FLTPVQLPAKVAVKEWREQGDVKRALCDVRTGRVHMYAWWPEAGQG
Ga0316605_116539051	3300033408	Soil	LPAIPRGARIETQFLSPVQLPARVAVKEWTADGQKKRALCDVRTGRVHMYAWWSEPLSSA
Ga0316605_124250442	3300033408	Soil	AAIPHGAVIGTQFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA
Ga0316603_103979041	3300033413	Soil	VIPRGARIDTQFLTPVQLPARVAIKEWTAEGQKKRALCDVRTGRVHMYAWWDAVIPA
Ga0316603_105322833	3300033413	Soil	IGTQFLSPVQLPARLAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA
Ga0316619_101106384	3300033414	Soil	LAQAPVPAIPRGTRIETQFLSPVQLPARVAVKEWTVEGQTKRALCDVRTGRVHMYAWWGEPVSSA
Ga0316619_104529271	3300033414	Soil	FLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTRA
Ga0316619_108116732	3300033414	Soil	PPGTRLETQFLTPVQLPARVAVKEWTADGQKKRALCDVRTGRVHMYAWWEEISRPA
Ga0316625_1006108752	3300033418	Soil	SLAQAPLPHIPPGTRLETQFLTPVQLPARVAVKEWTADGQKKRALCDVRTGRVHMYAWWEEISRPA
Ga0316625_1017303992	3300033418	Soil	RSLAQSPAPAIPRGTRIETQFLSPVQLPARVVIREWADAGQKKRALCDLRTGRVHMYAWWDEVSRPA
Ga0316601_1010631643	3300033419	Soil	AIPKGAVIGTQFLSPVQLPARVAIKEWSEEGQMKRALCDVRTGRVHMYVWWDAVTPA
Ga0316613_110103922	3300033434	Soil	GAVIGTQFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTRA
Ga0316600_103497162	3300033481	Soil	AQAPLPVIPRGARIDTQFLTPVQLPARVAIKEWTAEGQKKRALCDVRTGRVHMYAWWDAVIPA
Ga0316600_106794732	3300033481	Soil	RGTRIETQFLTPVQLPARVAIKEWVAEGNKKRALCDVRTGRVHMYAWW
Ga0316600_107068082	3300033481	Soil	FLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA
Ga0316600_107541462	3300033481	Soil	LAQAPAPLIPAGVTIGTQFLTPVQLPAKVAVKEWREQGEVKRALCDVRTGRVHMYAWWPEAGQG
Ga0316600_112487662	3300033481	Soil	VPVIPVGTRIETQFLTPVQLPARVAIKEWTAEGQRRRALCDTRTGRVHMYAWWPADIATA
Ga0316627_1003196561	3300033482	Soil	PVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTRA
Ga0316629_103547771	3300033483	Soil	RGARIETQFLSPVQLPARVAVKEWTADGQKKRALCDVRTGRVHMYAWWSEPLSSA
Ga0316629_104799712	3300033483	Soil	AEAPGAAIPKGAVIGTQFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTRA
Ga0316617_1005583463	3300033557	Soil	PHGAVIGTQFLSPVQLPARVAIKEWSEEGQVKRALCDVRTGRVHMYVWWDAVTPA
Ga0316617_1010783701	3300033557	Soil	PLIPAGATIGTQFLTPVQLPAKVAVKEWREQGDVKRALCDVRTGRVHIYAWWPEAGQG
Ga0316617_1015085413	3300033557	Soil	RIETQFLTPVQLPARVAIKEWTAEGQRRRALCDTRTGRVHMYAWWPADVATT
Ga0364923_0118603_524_673	3300034690	Sediment	TRIETQFLSPVQLPARVAIKEWKADGQVRRALCDVRTGRVHMYAWWASA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087398

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences