Metagenome Family F087397

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087397
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	45 residues
Representative Sequence	RLLKKAHLRRWPARALAAAYPEYASLGASRAALHLDLFEQPG
Number of Associated Samples	78
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	18.00 %
% of genes near scaffold ends (potentially truncated)	83.64 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (21.818 % of family members)
Environment Ontology (ENVO)	Unclassified (24.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (35.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00005	ABC_tran	4.55
PF00528	BPD_transp_1	3.64
PF13470	PIN_3	2.73
PF06826	Asp-Al_Ex	1.82
PF01012	ETF	1.82
PF07045	DUF1330	1.82
PF00892	EamA	1.82
PF00496	SBP_bac_5	1.82
PF13561	adh_short_C2	1.82
PF00691	OmpA	0.91
PF05163	DinB	0.91
PF02700	PurS	0.91
PF01261	AP_endonuc_2	0.91
PF14535	AMP-binding_C_2	0.91
PF02776	TPP_enzyme_N	0.91
PF16661	Lactamase_B_6	0.91
PF13145	Rotamase_2	0.91
PF00749	tRNA-synt_1c	0.91
PF00248	Aldo_ket_red	0.91
PF06792	UPF0261	0.91
PF02662	FlpD	0.91
PF01408	GFO_IDH_MocA	0.91
PF02405	MlaE	0.91
PF01565	FAD_binding_4	0.91
PF02580	Tyr_Deacylase	0.91
PF01022	HTH_5	0.91
PF14602	Hexapep_2	0.91
PF04074	DUF386	0.91
PF04519	Bactofilin	0.91
PF00069	Pkinase	0.91
PF00933	Glyco_hydro_3	0.91
PF07883	Cupin_2	0.91
PF08240	ADH_N	0.91
PF02899	Phage_int_SAM_1	0.91
PF03755	YicC_N	0.91
PF02823	ATP-synt_DE_N	0.91
PF01182	Glucosamine_iso	0.91
PF01969	Ni_insertion	0.91
PF01425	Amidase	0.91
PF02653	BPD_transp_2	0.91
PF00155	Aminotran_1_2	0.91
PF00106	adh_short	0.91
PF00730	HhH-GPD	0.91
PF05635	23S_rRNA_IVP	0.91
PF00456	Transketolase_N	0.91
PF14833	NAD_binding_11	0.91
PF01455	HupF_HypC	0.91
PF02567	PhzC-PhzF	0.91
PF01242	PTPS	0.91
PF00293	NUDIX	0.91
PF00994	MoCF_biosynth	0.91
PF00534	Glycos_transf_1	0.91
PF13183	Fer4_8	0.91
PF02775	TPP_enzyme_C	0.91
PF10609	ParA	0.91
PF03948	Ribosomal_L9_C	0.91
PF12848	ABC_tran_Xtn	0.91
PF03480	DctP	0.91
PF00578	AhpC-TSA	0.91
PF00301	Rubredoxin	0.91
PF02771	Acyl-CoA_dh_N	0.91
PF01656	CbiA	0.91
PF02163	Peptidase_M50	0.91
PF12327	FtsZ_C	0.91
PF03279	Lip_A_acyltrans	0.91
PF01264	Chorismate_synt	0.91
PF01435	Peptidase_M48	0.91
PF14486	DUF4432	0.91
PF13785	DUF4178	0.91
PF00389	2-Hacid_dh	0.91
PF02826	2-Hacid_dh_C	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.64
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.82
COG2985	Uncharacterized membrane protein YbjL, putative transporter	General function prediction only [R]	1.82
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	1.82
COG2086	Electron transfer flavoprotein, alpha and beta subunits	Energy production and conversion [C]	1.82
COG1641	CTP-dependent cyclometallase, nickel-pincer nucleotide (NPN) cofactor biosynthesis	Coenzyme transport and metabolism [H]	0.91
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.91
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.91
COG1828	Phosphoribosylformylglycinamidine (FGAM) synthase, PurS subunit	Nucleotide transport and metabolism [F]	0.91
COG1908	Coenzyme F420-reducing hydrogenase, delta subunit	Energy production and conversion [C]	0.91
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.91
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.91
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG2731	Beta-galactosidase, beta subunit	Carbohydrate transport and metabolism [G]	0.91
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.91
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.91
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.91
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.91
COG5441	ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family	Defense mechanisms [V]	0.91
COG0363	6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase	Carbohydrate transport and metabolism [G]	0.91
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.91
COG0082	Chorismate synthase	Amino acid transport and metabolism [E]	0.91
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.91
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.91
COG0177	Endonuclease III	Replication, recombination and repair [L]	0.91
COG0298	Hydrogenase maturation factor HybG, HypC/HupF family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.91
COG0359	Ribosomal protein L9	Translation, ribosomal structure and biogenesis [J]	0.91
COG1561	Endoribonuclease YloC, YicC family	Translation, ribosomal structure and biogenesis [J]	0.91
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.91
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	0.91
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	0.91
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.91
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.91
COG1490	D-aminoacyl-tRNA deacylase	Translation, ribosomal structure and biogenesis [J]	0.91
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.18 %
Unclassified	root	N/A	31.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.18 %
Unclassified	root	N/A	31.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.18 %
Unclassified	root	N/A	31.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.09 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	9.09 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	9.09 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.73 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	6.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.64 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.91 %
unclassified Zetaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria	0.91 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.91 %
Caldilineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.73 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	1.82 %
Candidatus Methylomirabilis	genus	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis	0.91 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Caldilineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales	0.91 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.73 %
candidate division NC10 bacterium RBG_16_65_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium RBG_16_65_8	1.82 %
Candidatus Methylomirabilis oxyfera	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	0.91 %
Caldilineaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae	0.91 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.73 %
candidate division NC10 bacterium RBG_16_65_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium RBG_16_65_8	1.82 %
Caldilinea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea	0.91 %
Candidatus Methylomirabilis oxyfera	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	0.91 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.82 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.73 %
candidate division NC10 bacterium RBG_16_65_8	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium RBG_16_65_8	1.82 %
Caldilinea aerophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila	0.91 %
Candidatus Methylomirabilis oxyfera	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	0.91 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918008\|ConsensusfromContig363523	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300004058\|Ga0055498_10123976	Not Available	544	Open in IMG/M
3300004282\|Ga0066599_101063741	Not Available	594	Open in IMG/M
3300004481\|Ga0069718_15827399	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	1474	Open in IMG/M
3300004778\|Ga0062383_10023279	All Organisms → cellular organisms → Bacteria	2218	Open in IMG/M
3300004778\|Ga0062383_10650049	Not Available	537	Open in IMG/M
3300004779\|Ga0062380_10256399	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300004782\|Ga0062382_10631965	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium RBG_16_65_8	526	Open in IMG/M
3300005263\|Ga0071346_1267784	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300005830\|Ga0074473_10429124	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005833\|Ga0074472_10876460	All Organisms → cellular organisms → Bacteria	3956	Open in IMG/M
3300006224\|Ga0079037_100220992	Not Available	1715	Open in IMG/M
3300006224\|Ga0079037_100502146	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300006224\|Ga0079037_101413675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	694	Open in IMG/M
3300009037\|Ga0105093_10208661	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300009039\|Ga0105152_10307549	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300009039\|Ga0105152_10463437	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300009085\|Ga0105103_10015794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3674	Open in IMG/M
3300009091\|Ga0102851_10305436	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300009091\|Ga0102851_11682599	Not Available	712	Open in IMG/M
3300009111\|Ga0115026_10810570	Not Available	733	Open in IMG/M
3300009111\|Ga0115026_11314848	Not Available	594	Open in IMG/M
3300009146\|Ga0105091_10431952	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300009157\|Ga0105092_10505718	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300009157\|Ga0105092_10840334	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009166\|Ga0105100_10323383	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300009167\|Ga0113563_12066500	Not Available	682	Open in IMG/M
3300009168\|Ga0105104_10486644	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300009170\|Ga0105096_10304303	Not Available	814	Open in IMG/M
3300009179\|Ga0115028_10081729	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1765	Open in IMG/M
3300009179\|Ga0115028_10128376	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300009179\|Ga0115028_11342229	Not Available	598	Open in IMG/M
3300010412\|Ga0136852_10973190	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300011340\|Ga0151652_13600553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1036	Open in IMG/M
3300011407\|Ga0137450_1089223	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300011408\|Ga0137460_1122976	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300012931\|Ga0153915_12494794	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	605	Open in IMG/M
3300012964\|Ga0153916_12954571	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300014306\|Ga0075346_1168968	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300014494\|Ga0182017_10332355	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300014498\|Ga0182019_10624391	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300014498\|Ga0182019_11443049	Not Available	511	Open in IMG/M
3300014502\|Ga0182021_10673130	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1240	Open in IMG/M
3300014502\|Ga0182021_11309258	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → Candidatus Methylomirabilis → Candidatus Methylomirabilis oxyfera	873	Open in IMG/M
3300014502\|Ga0182021_11364242	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300014502\|Ga0182021_11832715	Not Available	730	Open in IMG/M
3300014502\|Ga0182021_13143077	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300014839\|Ga0182027_10255403	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300014839\|Ga0182027_10759278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1020	Open in IMG/M
3300017939\|Ga0187775_10181421	Not Available	770	Open in IMG/M
3300017959\|Ga0187779_10788648	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300017961\|Ga0187778_10205082	Not Available	1257	Open in IMG/M
3300017961\|Ga0187778_10716106	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300017972\|Ga0187781_10873987	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300018058\|Ga0187766_10019438	All Organisms → cellular organisms → Bacteria	3892	Open in IMG/M
3300018086\|Ga0187769_10044344	All Organisms → cellular organisms → Bacteria	3070	Open in IMG/M
3300023311\|Ga0256681_12199886	Not Available	627	Open in IMG/M
(restricted) 3300024054\|Ga0233425_10307480	Not Available	701	Open in IMG/M
(restricted) 3300024054\|Ga0233425_10375353	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300024056\|Ga0124853_1200379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2350	Open in IMG/M
3300025865\|Ga0209226_10247511	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300027715\|Ga0208665_10096131	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300027831\|Ga0209797_10077617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1462	Open in IMG/M
3300027843\|Ga0209798_10272648	All Organisms → cellular organisms → Bacteria → Proteobacteria	817	Open in IMG/M
3300027890\|Ga0209496_10071691	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300027890\|Ga0209496_10119286	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300027890\|Ga0209496_10206533	Not Available	937	Open in IMG/M
3300027975\|Ga0209391_10268558	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300028069\|Ga0255358_1064363	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031726\|Ga0302321_100219094	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300031834\|Ga0315290_11410050	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300032164\|Ga0315283_12423428	Not Available	510	Open in IMG/M
3300032173\|Ga0315268_12682603	Not Available	512	Open in IMG/M
3300032177\|Ga0315276_12009815	Not Available	590	Open in IMG/M
3300032256\|Ga0315271_10617529	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300032401\|Ga0315275_10388602	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
3300032516\|Ga0315273_10067525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila	4855	Open in IMG/M
3300032770\|Ga0335085_11559329	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300032782\|Ga0335082_11278625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300033158\|Ga0335077_11289470	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	710	Open in IMG/M
3300033408\|Ga0316605_10777608	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	909	Open in IMG/M
3300033413\|Ga0316603_11281807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300033414\|Ga0316619_10176610	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300033414\|Ga0316619_11909992	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300033416\|Ga0316622_100816438	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium RBG_16_65_8	1084	Open in IMG/M
3300033416\|Ga0316622_102870658	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300033418\|Ga0316625_100643980	Not Available	875	Open in IMG/M
3300033419\|Ga0316601_100009177	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5888	Open in IMG/M
3300033433\|Ga0326726_11057113	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300033433\|Ga0326726_11166937	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300033482\|Ga0316627_100924639	Not Available	838	Open in IMG/M
3300033483\|Ga0316629_10183510	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300033483\|Ga0316629_10824702	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300033485\|Ga0316626_10043267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	3021	Open in IMG/M
3300033513\|Ga0316628_101089858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	1062	Open in IMG/M
3300033513\|Ga0316628_102632796	Not Available	663	Open in IMG/M
3300033521\|Ga0316616_102336950	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300033521\|Ga0316616_102482903	Not Available	695	Open in IMG/M
3300033805\|Ga0314864_0151409	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300033806\|Ga0314865_093621	Not Available	786	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	52.73%
Terrestrial	Environmental → Terrestrial	47.27%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	47.27%
Soil	Environmental → Terrestrial → Soil	41.82%
Sediment	Environmental → Aquatic → Sediment	4.55%
Peat	Environmental → Terrestrial → Peat	3.64%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.82%
Marine	Environmental → Aquatic → Marine	0.91%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	40.00%
Sediment	Environmental → Aquatic → Freshwater → Sediment	18.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.45%
Lake	Environmental → Aquatic → Freshwater → Lake	12.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.82%
Pond	Environmental → Aquatic → Freshwater → Pond	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.91%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	18.18%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	14.55%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	10.00%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	2.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	21.82%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	9.09%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	8.18%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	8.18%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.18%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	7.27%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.36%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	5.45%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.82%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	1.82%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.82%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.82%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	1.82%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.91%
Anaerobic Enrichment Culture	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Anaerobic Enrichment Culture	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.91%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005263	Freshwater pond sediment microbial communities from Middleton WI, enriched with Humic Acid Only under anaerobic conditions - HA Sample 3	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014306	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300023311	Combined Assembly of Gp0281739, Gp0281740, Gp0281741	Environmental	Open in IMG/M
3300024054 (restricted)	Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_140_MG	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025865	Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027890	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027975	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300028069	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
Bog_all_C_03284980	2140918008	Soil	LKKAHLRRWNAQALVAAYLEYASLGPSRAALHLDLFEQPGKKVVSSFDSGSD
Ga0055498_101239761	3300004058	Natural And Restored Wetlands	LLKKAHLRRWPARALVAACLKYASLGPARAALHPDLFEQPGQM*
Ga0066599_1010637412	3300004282	Freshwater	LLKKAHLLRWHARALAAAYLKYASLGPLRAALHLDLFEQPG*
Ga0069718_158273993	3300004481	Sediment	LLKKAHLRRWPASPLAAAYVQYASLGLRRAALHLGLFEQPG*
Ga0062383_100232791	3300004778	Wetland Sediment	MYPPLRLLKKAHLLCWLTWALVAAYLEYASLGPSRAALQLDLFE*
Ga0062383_106500492	3300004778	Wetland Sediment	MLLKKAHLLRRSALVTAAYNSYASFLRSSQALHLDLFEQPAR*
Ga0062380_102563991	3300004779	Wetland Sediment	LKKAHLRRWRARALVAAYLEYASLGASLAALHLVLFEQPGKKRVLR*
Ga0062382_106319652	3300004782	Wetland Sediment	RLLKKAHLLRWRARALVAAYLEYASLGPLPAAWHLGLFEQPGRARVFP*
Ga0071346_12677843	3300005263	Anaerobic Enrichment Culture	LLKKAHLRRWNAWALIAAYLEYASLGPAHSALHLDLLEQPGR
Ga0074473_104291241	3300005830	Sediment (Intertidal)	GSRLLKKAHLLRWHARALAAAYLKYASLGLLRAALHLDLFEQPG*
Ga0074472_108764606	3300005833	Sediment (Intertidal)	AEKAHLLRWSACALVAAYPMYASLGPSHAALHLGLFEQSDGRRL*
Ga0079037_1002209922	3300006224	Freshwater Wetlands	VAFGIAFSFTRLLKKAQLRRWSALPLAATYFQYASLGHRPSALHLSLFEPP
Ga0079037_1005021461	3300006224	Freshwater Wetlands	LKKAHLRRWPARALVAAYLEYASLGPSRAALHLDP*
Ga0079037_1014136751	3300006224	Freshwater Wetlands	RLLKKAHLRRWLTRALVAAYLEYASLGPARAALHLDL*
Ga0079037_1018900051	3300006224	Freshwater Wetlands	RLLKKAHLRRWLTRALVAAYLEYASLGPACAALQLDLFEQPDQKRAF*
Ga0079303_101058421	3300006930	Deep Subsurface	MVLPPFRLLKKAHLRRWRTRALLAAYLEYASLGPARAALH
Ga0105093_102086611	3300009037	Freshwater Sediment	KKAHLRRWLSWALAAAYLEYASLGPVCAALHLDLF*
Ga0105152_103075491	3300009039	Lake Sediment	HLRRWKAEALVAAYPEYASLGLAPSALHLDRFEQPAEK*
Ga0105152_104634371	3300009039	Lake Sediment	MASSRLLKKAHLRRWRAGALAAAYRKYASLGPARAAWHLDLFEQPG
Ga0105103_100157944	3300009085	Freshwater Sediment	MLLKTAHLRRWPASPLAAAYLQYASLGRQRAALHLDRFEQPG*
Ga0102851_103054361	3300009091	Freshwater Wetlands	MAHLLRWLTRALVAAYLEYASLGPACAALHLGLFEQP
Ga0102851_116825991	3300009091	Freshwater Wetlands	RWSASPLAAAYFQYASLGLQHSALHLDLFEQPVRKIIL*
Ga0115026_108105701	3300009111	Wetland	RLLKKAHLRRWHASALAAAYPQYASLGLCRAALHLGLFEQPAE*
Ga0115026_113148481	3300009111	Wetland	EKAHPRRWLTPALVAAYLEYASLGPTCAALRLDLFEQPGQNPFFVI*
Ga0105091_104319521	3300009146	Freshwater Sediment	LLKKAQLLRWRARALAAAYREYASLGPSLAALHLDLFEQPGRE*
Ga0105092_105057181	3300009157	Freshwater Sediment	MGTNRLLKKAHLRRWRPCALAAAYLEYASLGTSCAALHLNLFEQPARKRFGST
Ga0105092_108403341	3300009157	Freshwater Sediment	KKAYLRRWRASALAAAYLQYACTQQTGYPGLRRAALHLGLFEQPDQIEVFRN*
Ga0105100_103233832	3300009166	Freshwater Sediment	MSVPLDVIRLLKKAHLRRWRASALAATYLQYASLGLWHAALHPDLF*
Ga0113563_120665002	3300009167	Freshwater Wetlands	RLLKKAHLLRWLARALVAAYQKYASLGLLRAALHLDLFEQPFSKRVL*
Ga0105104_104866443	3300009168	Freshwater Sediment	VRLLKTAHLPRWRACALAAAYLEYASLGASHAALHLDRFEQ
Ga0105096_103043031	3300009170	Freshwater Sediment	KKAHLLRCRAWALAAAYLEYASLGPVRGASHLDLF*
Ga0115028_100817291	3300009179	Wetland	LKKAHLLRWPTSPLAAAYLQYASLGLRRTALHLDLFEQPDQKTGSLAIY*
Ga0115028_101283761	3300009179	Wetland	LKKAHLRRWRASALAATYLQYASLDLWRAALHLDLFEQPGRASCSCAFPP*
Ga0115028_113422291	3300009179	Wetland	PNRLLKKAHLLRWLARALAAAYLEYASLGPARAALHLDLFEQPAR*
Ga0136852_109731902	3300010412	Mangrove Sediment	SNNRLLKTVHLRRWRARALAAAYLKYASLGPSLAALYLDRFEQPG*
Ga0151652_136005531	3300011340	Wetland	MLARLLKKAHLLRWRAGALAAAYRKYASLGPALAVLHLDLFEQPGRKW
Ga0137450_10892232	3300011407	Soil	GMNTPDRLLKKAHLPRWPASPLAAAYLQYASLGLRHAALHLDLFEQPARK*
Ga0137460_11229762	3300011408	Soil	VSRRLLKKAHLLRSPASPLAAAYFQYASLGLRRAALHLGLFEQPE*
Ga0153915_124947942	3300012931	Freshwater Wetlands	LGRLLKKAHLRRWPASALTAAYLQYASLGLWRAALHLDLFEQPGE*
Ga0153916_129545711	3300012964	Freshwater Wetlands	VASPGRRLKKAHPLRWHAWALVAAYLEYASLGPSRAALRLDLFEPPGQIELFGVRP
Ga0075346_11689681	3300014306	Natural And Restored Wetlands	VKNRLLKKAHLRRWRAWALVAAYRKYASLGPSLAAWHLDLF
Ga0182017_103323551	3300014494	Fen	RLLKKIHLLRWPAWALAAAYLEYASLGPSRAALHLDLFEQPADI*
Ga0182019_106243911	3300014498	Fen	GSSPNRLLKKAHLRRWNAQALAAAYLEYASLGLPHSALHLDLFEQPE*
Ga0182019_114430491	3300014498	Fen	RWNAQALVAAYLEYASLGLPHSALHLDLFEQPAEE*
Ga0182021_106731302	3300014502	Fen	MLLKKAHLLRWRARVLAAAYLEYASLDPSLAALHLDLFEQPAEK*
Ga0182021_113092581	3300014502	Fen	RLLKKAHLRRWHAGALGAAYRKYASLGPARAALHLDLFEQPAE*
Ga0182021_113642422	3300014502	Fen	CSSRLLKKAHLRRWHAWALAAAYLEYASLGPSRAALHLDLFEQPAEE*
Ga0182021_118327152	3300014502	Fen	SDPNRLLKKAHLRRWHARALATAYLEYASRSLSRAALHLDLFE*
Ga0182021_131430771	3300014502	Fen	RLLKKTHLRRWLARTLVAAYLEYASLGPSRAALHLDLFEQPAEK*
Ga0182027_102554035	3300014839	Fen	AHLRRWNAQALVAAYLEYASLGLPHSALHLDLFEQPAEE*
Ga0182027_107592781	3300014839	Fen	SRLLKKAHLRRWHAWALVAAYLEYASLGPSRAALHLDLFEQPAEE*
Ga0187775_101814212	3300017939	Tropical Peatland	RLLKKAHLRRWPARALAAAYPEYASLGASRAALHLDLFEQPG
Ga0187779_107886482	3300017959	Tropical Peatland	MVSRLLKKAHLRRWRARALAAAYPEYASLGASRAALHLDLFE
Ga0187778_102050822	3300017961	Tropical Peatland	LLKKAHLRRWRARALAAAYPKYASLGASRAALHLDLFEQPAQK
Ga0187778_107161062	3300017961	Tropical Peatland	MTPGARLLKKAHLRRWRARALPAAYPAYASVGASRAALHLDLFEQ
Ga0187781_108739872	3300017972	Tropical Peatland	MARLSGLLKKAHLRRWCARALPAAYPAYASVGASRAALHLDLFEQ
Ga0187766_100194384	3300018058	Tropical Peatland	MVSRLLKKAHLRRWRARALAAAYPEYASLGASRAALHLDLFEQ
Ga0187769_100443441	3300018086	Tropical Peatland	LLKKAHLRRWRARALAAAYPEYASLGASRAALHLDLFEQPGQMP
Ga0256681_121998862	3300023311	Freshwater	MAHLLRWLARALVAAYPVYASLDPSRAALHLDLFEQ
(restricted) Ga0233425_103074801	3300024054	Freshwater	MTHLLRWNAQALVAAYLEYASLGLPRSALHLDLFEQPEPG
(restricted) Ga0233425_103753531	3300024054	Freshwater	DRPPDAAPRGDVRRRLLKKVHLRRWFGSALAATYLQYASLGLRQTALHMNLFEQPE
Ga0124853_12003791	3300024056	Freshwater Wetlands	PGLAPGLNRPLKPAHLRRWKTQALIAAYLQYASLGLPSSALHLDRFERPGPD
Ga0209226_102475113	3300025865	Arctic Peat Soil	GGPGRLLKKAHLLRWNAQAFVAAYLEYASLSLLHSALHLDLFEQPAER
Ga0208665_100961313	3300027715	Deep Subsurface	LKKAHLRRWPTSPLAAAYLQYASLGLRRAALQLDLFEQPERI
Ga0209797_100776171	3300027831	Wetland Sediment	KKAHLRRWRARALVAAYLEYASLGASLAALHLVLFEQPGKKRVLR
Ga0209798_102726482	3300027843	Wetland Sediment	DDSSADFSRPLKTAHLLRWRVRALAAAYLEYASLGPALAAWHLDRFERPDR
Ga0209397_103641742	3300027871	Wetland	YRGRRDRRSRLLKKAHLLRWLPRALVAAYLEYASLGPAVAALHLSLFEQPGEN
Ga0209496_100716911	3300027890	Wetland	RPASSPLKTAHLLRWLASPLAATYLQYASLGLRRAALHLDRFERPGR
Ga0209496_101192861	3300027890	Wetland	SRLVKKAHLPRWPASALAATYFQYASLGLRRAALHLDLFEQPEERGTSAFS
Ga0209496_102065331	3300027890	Wetland	REVSHRLLKKVHLRRWFAWSLVAACLEYASLGPSRTALHLGLFEQPE
Ga0209391_102685581	3300027975	Freshwater Sediment	MSTATSYRLLKKAHLRRWFASALAATYLQYASLGLRQTALHLALFEPP
Ga0255358_10643632	3300028069	Soil	PGRLLKKAHLRRWNAQALVAAYLEYASLGLPHSALHLDLFEQPE
Ga0302321_1002190942	3300031726	Fen	MLLKKAHLLRWRARVLAAAYLEYASLKPSLAALHLDLFEQPG
Ga0315290_114100502	3300031834	Sediment	WSFRGMNAPDRLLKKAHLPRWPASPLAAAYLQCASLGLRHAALHLDLFEQPARK
Ga0315283_124234281	3300032164	Sediment	SGRIISRLLKKAYLRRWNAQALVAAYLQYASLGLPHSALHLDLFEQPGR
Ga0315268_126826032	3300032173	Sediment	LASPNRLLKKAHLLRWHAWALVAAYLEYASLGPSRAALHLDLFEQPTKK
Ga0315276_120098152	3300032177	Sediment	MPDADPVSSRLLKKAHLRRWRARAALRRTRQYASHHASRAALH
Ga0315271_106175291	3300032256	Sediment	VAPNPGRPLKKAHLLRWNAQALVAAYLEYASLGLPHSVLHLDLFERPE
Ga0315275_103886021	3300032401	Sediment	MRWWSGPNRLLKKAHLRRWHAGALVAAYRKYASLGPARAALHLDLFEQPGRK
Ga0315273_100675251	3300032516	Sediment	LLKRAHLLRWHTRALAAAYLEYASLGPLRAALHLDLFEQPG
Ga0315273_104275661	3300032516	Sediment	SRLLKKAHLLRWHAWALAAAYLEYASLSPARAALHLDFFEQPMNVSISAAC
Ga0315273_111237241	3300032516	Sediment	WWTGRLLKKAHLLRWHARALAAAYLKYASLGPSRAALHLDLFEQPERKRVFQ
Ga0335085_115593291	3300032770	Soil	ARLRRWRASALAAAYAEYASLGGSPAALHLDLFEQPERELRG
Ga0335082_112786252	3300032782	Soil	VCNRLLKKAHLRRWSAPALAAAYQEYASLGGSQTALHLDLFEQPERKFSG
Ga0335077_112894702	3300033158	Soil	RCRAFVFMRLLKTAHLLRWPASALAAAYHQYASLGLRCAALHMDRFEQPR
Ga0316605_107776082	3300033408	Soil	LRGRLLKKAHLRRWPASALAAAYLQYASLGLRCAALHLDLFEQPP
Ga0316603_112818072	3300033413	Soil	MTATLLKTAHLLRWSARALAAAYLEYASLGAPRSALHLDLFEQPGRDT
Ga0316619_101766101	3300033414	Soil	RASISVRSRLLKKAHVRRWPASALAAAYLQYASLGLWRAALHLDLFEQPGR
Ga0316619_118467751	3300033414	Soil	METPRRLLKKAHLLRWLAQALVAAYLEYASLGLTLAALHLSLFEQPG
Ga0316619_119099922	3300033414	Soil	VTGRLLKKAHLLRWLPRALVAAYLEYASLGPAVAALHLDLFEQP
Ga0316622_1005089702	3300033416	Soil	DRLLENAHLRRWSASPLAAAYLQYASLGLRLSALHLGLFEQRQAYGFFSIL
Ga0316622_1008164381	3300033416	Soil	LLKKAHLLRWRARALAATYQEYASLGPSRAALHLGLFEQPGG
Ga0316622_1028706581	3300033416	Soil	AVKKAHLRRWRACALVAAYLEYASLGASHAALHLDLFEQPGR
Ga0316625_1006439801	3300033418	Soil	AAPAVAFGGLLKKADLRRWPASALAATYLQYASLGLRRAALHLGPF
Ga0316601_1000091771	3300033419	Soil	LKKAHLRRWSAWALAAAYLEYASLGPSRTALHLDLFEQPEK
Ga0326726_110571131	3300033433	Peat Soil	RQERYSPIRLLKKAHLLRCPASPLAAAYLQYASLGLRRAALHLDLFEQPG
Ga0326726_111669372	3300033433	Peat Soil	MVVSLGRLLKKAHLQRWSPLPLAAAYFQYASLGLQRSALHLDRFEQPG
Ga0316627_1009246391	3300033482	Soil	RLLKKAHLLRWNARALIAAYLEYASLGAPRSALHLDLFEQPG
Ga0316629_101835101	3300033483	Soil	MKAPFSRLLKKAHLRRWSALPLAAAYFQYTSLGHRHSALHLGPFEQPGEKRGFP
Ga0316629_108247022	3300033483	Soil	AMNRLLKKAHLRRWRAWALAAAYQEYASLGPSHAALHLDLFEQPEQ
Ga0316626_100432673	3300033485	Soil	QAAEKAHPRRWLTPALVAAYLEYASLGPTCAALRLDLFEQPGQNPFFVI
Ga0316621_102112202	3300033488	Soil	VKKVHLLGWMASALPATYLQYASLGLRPSALHLDLFELPA
Ga0316628_1010898582	3300033513	Soil	MGSRLLKKAHLRRWPASALAAAYHQYASLGLWRAALHLGLF
Ga0316628_1024105281	3300033513	Soil	MHTTSPSRLLKKAHLPRWRAQALAAAYLQYASLGLSPAALHLGLFEQPGENALFS
Ga0316628_1026327961	3300033513	Soil	WTNRLLKKAHLRRWLASPLAAAYLQYASLGLRHAALHLDLFEQPG
Ga0316616_1022857211	3300033521	Soil	GVTSRLLKKAHLRRWLPRALVAAYLEYASLGPAVAALRLDLFEQPGEN
Ga0316616_1023369501	3300033521	Soil	SRLLKTVHLRRWRTSPLPAAYLQYASLGLQRAALHLDLFEQPGK
Ga0316616_1024829032	3300033521	Soil	LLKRTHLLRWPASALAAAFLQYASLGRRPAALHLGPFVQPERK
Ga0314864_0151409_3_149	3300033805	Peatland	MSIASSRLLKKAHLRRWRARALAATYPVYASLGPARAALHLDLFEQPAG
Ga0314865_093621_655_786	3300033806	Peatland	LLKKAHLRRWRARALAAAYPEYASLGASRAALHLDLFEQPGQK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters