Metagenome / Metatranscriptome Family F087374

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087374
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	70 residues
Representative Sequence	MQTKTEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRIQLIDAVFTPFCARP
Number of Associated Samples	72
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.56 %
% of genes near scaffold ends (potentially truncated)	35.45 %
% of genes from short scaffolds (< 2000 bps)	82.73 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (64.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (79.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.13% β-sheet: 0.00% Coil/Unstructured: 46.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
a.151.1.1: Glutamyl tRNA-reductase dimerization domain	d1gpja1	1gpj	0.75159
f.22.1.1: ABC transporter involved in vitamin B12 uptake, BtuC	d2qi9a_	2qi9	0.66011
f.54.1.2: Amino acid antiporter-like	d5j4ia_	5j4i	0.64513
f.54.1.2: Amino acid antiporter-like	d3giaa_	3gia	0.64391
f.13.1.0: automated matches	d7crja_	7crj	0.64144

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF09926	DUF2158	7.27
PF07589	PEP-CTERM	6.36
PF07519	Tannase	6.36
PF12833	HTH_18	3.64
PF07769	PsiF_repeat	2.73
PF07364	DUF1485	1.82
PF02525	Flavodoxin_2	1.82
PF01979	Amidohydro_1	1.82
PF14321	DUF4382	1.82
PF00561	Abhydrolase_1	0.91
PF13437	HlyD_3	0.91
PF02529	PetG	0.91
PF13147	Obsolete Pfam Family	0.91
PF01594	AI-2E_transport	0.91
PF00239	Resolvase	0.91
PF00589	Phage_integrase	0.91
PF13840	ACT_7	0.91
PF03279	Lip_A_acyltrans	0.91
PF13430	DUF4112	0.91
PF13545	HTH_Crp_2	0.91
PF10115	HlyU	0.91
PF06742	DUF1214	0.91
PF00400	WD40	0.91
PF13432	TPR_16	0.91
PF00891	Methyltransf_2	0.91
PF13356	Arm-DNA-bind_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG5476	Microcystin degradation protein MlrC, contains DUF1485 domain	General function prediction only [R]	1.82
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.91
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.91
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.91
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.91
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.91
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.91
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
All Organisms	root	All Organisms	45.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
cellular organisms	root	All Organisms → cellular organisms	45.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	8.18 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4.55 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Schlegelella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %
unclassified Polaromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.55 %
Schlegelella koreensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %
Polaromonas sp. JS666	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. JS666	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106734102	Not Available	811	Open in IMG/M
3300000956\|JGI10216J12902_113335751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1089	Open in IMG/M
3300004114\|Ga0062593_100878073	All Organisms → cellular organisms → Bacteria → Proteobacteria	903	Open in IMG/M
3300004156\|Ga0062589_100131489	All Organisms → cellular organisms → Bacteria → Proteobacteria	1674	Open in IMG/M
3300005093\|Ga0062594_100793338	Not Available	874	Open in IMG/M
3300005093\|Ga0062594_101549243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	683	Open in IMG/M
3300005293\|Ga0065715_10962269	Not Available	556	Open in IMG/M
3300005329\|Ga0070683_100007993	All Organisms → cellular organisms → Bacteria	8975	Open in IMG/M
3300005331\|Ga0070670_100018545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5969	Open in IMG/M
3300005331\|Ga0070670_101069333	Not Available	735	Open in IMG/M
3300005333\|Ga0070677_10564935	Not Available	625	Open in IMG/M
3300005333\|Ga0070677_10684495	Not Available	576	Open in IMG/M
3300005335\|Ga0070666_10509994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	872	Open in IMG/M
3300005335\|Ga0070666_10760875	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300005338\|Ga0068868_100540013	Not Available	1026	Open in IMG/M
3300005345\|Ga0070692_10395049	Not Available	871	Open in IMG/M
3300005353\|Ga0070669_100772963	All Organisms → cellular organisms → Bacteria → Proteobacteria	815	Open in IMG/M
3300005353\|Ga0070669_100841002	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005353\|Ga0070669_100973046	Not Available	727	Open in IMG/M
3300005353\|Ga0070669_101008529	All Organisms → cellular organisms → Bacteria → Proteobacteria	714	Open in IMG/M
3300005353\|Ga0070669_101564241	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300005354\|Ga0070675_100372999	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300005354\|Ga0070675_100437158	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300005356\|Ga0070674_100742674	Not Available	843	Open in IMG/M
3300005364\|Ga0070673_100407573	Not Available	1217	Open in IMG/M
3300005364\|Ga0070673_100792656	Not Available	874	Open in IMG/M
3300005459\|Ga0068867_100111638	All Organisms → cellular organisms → Bacteria → Proteobacteria	2101	Open in IMG/M
3300005459\|Ga0068867_101727899	Not Available	587	Open in IMG/M
3300005543\|Ga0070672_100040400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	3579	Open in IMG/M
3300005543\|Ga0070672_100218514	All Organisms → cellular organisms → Bacteria → Proteobacteria	1598	Open in IMG/M
3300005543\|Ga0070672_101259864	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005543\|Ga0070672_101281065	Not Available	654	Open in IMG/M
3300005564\|Ga0070664_100031601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4425	Open in IMG/M
3300005564\|Ga0070664_100601655	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300005564\|Ga0070664_101043848	Not Available	769	Open in IMG/M
3300005617\|Ga0068859_103045303	Not Available	512	Open in IMG/M
3300005834\|Ga0068851_10452624	Not Available	763	Open in IMG/M
3300005840\|Ga0068870_10819702	Not Available	652	Open in IMG/M
3300005841\|Ga0068863_101163442	Not Available	777	Open in IMG/M
3300005841\|Ga0068863_101355429	Not Available	719	Open in IMG/M
3300005841\|Ga0068863_101918312	Not Available	602	Open in IMG/M
3300006046\|Ga0066652_100237352	Not Available	1590	Open in IMG/M
3300006237\|Ga0097621_100041043	Not Available	3723	Open in IMG/M
3300009148\|Ga0105243_10149163	All Organisms → cellular organisms → Bacteria → Proteobacteria	2004	Open in IMG/M
3300009176\|Ga0105242_10275494	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300009176\|Ga0105242_10557554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas → unclassified Polaromonas → Polaromonas sp. JS666	1100	Open in IMG/M
3300009177\|Ga0105248_12912865	Not Available	545	Open in IMG/M
3300010403\|Ga0134123_11741053	Not Available	675	Open in IMG/M
3300012469\|Ga0150984_121952058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	692	Open in IMG/M
3300012900\|Ga0157292_10355305	Not Available	542	Open in IMG/M
3300012909\|Ga0157290_10463041	Not Available	509	Open in IMG/M
3300012915\|Ga0157302_10323296	Not Available	608	Open in IMG/M
3300013297\|Ga0157378_11861451	Not Available	650	Open in IMG/M
3300013306\|Ga0163162_10081103	All Organisms → cellular organisms → Bacteria	3314	Open in IMG/M
3300013306\|Ga0163162_10487124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1364	Open in IMG/M
3300015371\|Ga0132258_10200443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4841	Open in IMG/M
3300015371\|Ga0132258_10781240	All Organisms → cellular organisms → Bacteria	2407	Open in IMG/M
3300015371\|Ga0132258_11041408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2068	Open in IMG/M
3300015371\|Ga0132258_11062564	All Organisms → cellular organisms → Bacteria	2046	Open in IMG/M
3300015372\|Ga0132256_103502648	Not Available	528	Open in IMG/M
3300015374\|Ga0132255_106263076	Not Available	504	Open in IMG/M
3300017792\|Ga0163161_11315413	Not Available	629	Open in IMG/M
3300018468\|Ga0066662_11582354	Not Available	683	Open in IMG/M
3300018476\|Ga0190274_10085687	Not Available	2445	Open in IMG/M
3300018476\|Ga0190274_10372128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1370	Open in IMG/M
3300018481\|Ga0190271_10095274	Not Available	2722	Open in IMG/M
3300018481\|Ga0190271_10454185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Schlegelella → Schlegelella koreensis	1386	Open in IMG/M
3300018481\|Ga0190271_10882841	Not Available	1019	Open in IMG/M
3300025271\|Ga0207666_1025477	Not Available	887	Open in IMG/M
3300025321\|Ga0207656_10450810	Not Available	650	Open in IMG/M
3300025893\|Ga0207682_10007413	All Organisms → cellular organisms → Bacteria → Proteobacteria	4370	Open in IMG/M
3300025893\|Ga0207682_10048285	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300025900\|Ga0207710_10682383	Not Available	538	Open in IMG/M
3300025909\|Ga0207705_11096808	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300025923\|Ga0207681_10235800	All Organisms → cellular organisms → Bacteria → Proteobacteria	1422	Open in IMG/M
3300025925\|Ga0207650_10473764	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300025925\|Ga0207650_10542814	Not Available	974	Open in IMG/M
3300025925\|Ga0207650_11298278	Not Available	619	Open in IMG/M
3300025926\|Ga0207659_10520249	Not Available	1009	Open in IMG/M
3300025926\|Ga0207659_10755067	Not Available	834	Open in IMG/M
3300025930\|Ga0207701_10502640	Not Available	1037	Open in IMG/M
3300025931\|Ga0207644_10214066	All Organisms → cellular organisms → Bacteria → Proteobacteria	1525	Open in IMG/M
3300025931\|Ga0207644_11458654	Not Available	575	Open in IMG/M
3300025931\|Ga0207644_11815262	Not Available	510	Open in IMG/M
3300025934\|Ga0207686_11201650	Not Available	621	Open in IMG/M
3300025938\|Ga0207704_11432255	Not Available	592	Open in IMG/M
3300025938\|Ga0207704_11582943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300025940\|Ga0207691_10511179	Not Available	1020	Open in IMG/M
3300025940\|Ga0207691_11089352	Not Available	665	Open in IMG/M
3300025941\|Ga0207711_10185015	All Organisms → cellular organisms → Bacteria → Proteobacteria	1896	Open in IMG/M
3300025944\|Ga0207661_10028504	All Organisms → cellular organisms → Bacteria	4277	Open in IMG/M
3300025945\|Ga0207679_10806697	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300025960\|Ga0207651_10684767	Not Available	902	Open in IMG/M
3300025986\|Ga0207658_10547927	All Organisms → cellular organisms → Bacteria → Proteobacteria	1035	Open in IMG/M
3300026023\|Ga0207677_11204225	Not Available	693	Open in IMG/M
3300026088\|Ga0207641_11130943	Not Available	782	Open in IMG/M
3300026088\|Ga0207641_11297392	Not Available	728	Open in IMG/M
3300026089\|Ga0207648_11728185	Not Available	587	Open in IMG/M
3300028587\|Ga0247828_10026029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2348	Open in IMG/M
3300028587\|Ga0247828_11158257	Not Available	515	Open in IMG/M
3300031538\|Ga0310888_10076382	All Organisms → cellular organisms → Bacteria → Proteobacteria	1646	Open in IMG/M
3300031908\|Ga0310900_10832149	Not Available	749	Open in IMG/M
3300031908\|Ga0310900_11338752	Not Available	600	Open in IMG/M
3300031938\|Ga0308175_101277429	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031939\|Ga0308174_10029324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3524	Open in IMG/M
3300032179\|Ga0310889_10525772	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300033550\|Ga0247829_10590320	Not Available	923	Open in IMG/M
3300034661\|Ga0314782_017465	All Organisms → cellular organisms → Bacteria → Proteobacteria	1183	Open in IMG/M
3300034675\|Ga0314800_006235	All Organisms → cellular organisms → Bacteria → Proteobacteria	1203	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	70.00%
Environmental	Environmental	30.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	70.00%
Terrestrial	Environmental → Terrestrial	30.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.45%
Soil	Environmental → Terrestrial → Soil	30.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.64%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	38.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.45%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	38.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.18%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	18.18%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	13.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034675	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1067341023	3300000956	Soil	MHTDTQDAMRTALRQAGAIAAVDGPYSIRERLSLAHRLYDAMLVLTPEERARRIHLIDTVFPPLAPRVFP*
JGI10216J12902_1133357513	3300000956	Soil	MHTETQDAMRAALRQASAITAVDGHYSIRQKLGLAHQLYDAMLLLQPEERARRIRLIDTIFTPPAQRL*
Ga0062593_1008780731	3300004114	Soil	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR*
Ga0062589_1001314894	3300004156	Soil	MQTEMQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRICLIDTMFPPLAPRL*
Ga0062594_1007933382	3300005093	Soil	MHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLMQPEARARRIRLIDAVFTSAAPRP*
Ga0062594_1015492431	3300005093	Soil	MQTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLMKPEERARTIRLIDTVFPPLAPRYERTRRSP*
Ga0065715_109622691	3300005293	Miscanthus Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTACCARL*
Ga0070683_1000079939	3300005329	Corn Rhizosphere	MVTIGYSRHPCGNRPQRPMPTKTDDEMRIALRQACAITAVGGQYSIRQRLGVAHRLYDAMLLLEPDDRARRIRLIDAVFTPSARAPEQTGRDPCT*
Ga0070670_1000185454	3300005331	Switchgrass Rhizosphere	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPAWRR*
Ga0070670_1010693332	3300005331	Switchgrass Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLMKPEERARTIRLIDTVFPPLAPRYE
Ga0070677_105649351	3300005333	Miscanthus Rhizosphere	EDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRIRLIDAVFTPFCARL*
Ga0070677_106844951	3300005333	Miscanthus Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLLKPDERARRIRLIDTVFPPLAPRL*
Ga0070666_105099942	3300005335	Switchgrass Rhizosphere	GILAQQTTRPMPTKTDEEMRIALRQACAITAVGGQYSIRQRLGVAHRLYDAMLLLEPDDRARRIRLIDAMFTPSARAPEQTGRDPCT*
Ga0070666_107608751	3300005335	Switchgrass Rhizosphere	MRTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDE
Ga0068868_1005400133	3300005338	Miscanthus Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTPCRARL*
Ga0070692_103950491	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MVTACILAVGDQKTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLMQPEARARR
Ga0070669_1007729632	3300005353	Switchgrass Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLMKPEERARTIRLIDTVFPPLAPRYERTRRSP*
Ga0070669_1008410022	3300005353	Switchgrass Rhizosphere	AGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDEVFAPSARGSGRRRRDP
Ga0070669_1009730461	3300005353	Switchgrass Rhizosphere	LVTRGILAQQTTRPMPTKTDEEMRIALRQACAITAVGGQYSIRQRLGVAHRLYDAMLLLEPDDRARRIRLIDAMFTPSARAPEQTGRDPCT*
Ga0070669_1010085292	3300005353	Switchgrass Rhizosphere	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLI
Ga0070669_1015642411	3300005353	Switchgrass Rhizosphere	RQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRICLIDTMFPPLAPRL*
Ga0070675_1003729992	3300005354	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLEPDDRARRIRLIDAVFTPSARGSGRTRRDP*
Ga0070675_1004371581	3300005354	Miscanthus Rhizosphere	MHIDTQDAMRTALRQAGAITVVEGRHSIRQRLSLAHDLYDALLRLPRDERVRRVNLIDAIFPPPPASRR*
Ga0070674_1007426741	3300005356	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRIQLIDAVFTPFCARP*
Ga0070673_1004075731	3300005364	Switchgrass Rhizosphere	MRTKTEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLQLEPVDRARRIRLIDAVFTPLCAKP*
Ga0070673_1007926561	3300005364	Switchgrass Rhizosphere	MTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMF
Ga0068867_1001116382	3300005459	Miscanthus Rhizosphere	MVTACILAVGDQKTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLMQPEARARRIRLIDAVFTSAAPRP*
Ga0068867_1017278991	3300005459	Miscanthus Rhizosphere	AMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR*
Ga0070672_1000404008	3300005543	Miscanthus Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTPCCARL*
Ga0070672_1002185144	3300005543	Miscanthus Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRICLIDTMFPPLAPRL*
Ga0070672_1012598641	3300005543	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDERARRIRLIDAVFAPSARAS
Ga0070672_1012810652	3300005543	Miscanthus Rhizosphere	MQTKTEDEIRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLQLEPVDRARRIRLIDAVFTPLCAKP*
Ga0070664_1000316013	3300005564	Corn Rhizosphere	MPTKTDDEMRIALRQACAITAVGGQYSIRQRLGVAHRLYDAMLLLEPDDRARRIRLIDAVFTPSARAPEQTGRDPCT*
Ga0070664_1006016552	3300005564	Corn Rhizosphere	MHIDTQDAMRTALRQAGAITVVDGRHSIRQRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRL*
Ga0070664_1010438482	3300005564	Corn Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLRLEPVDRARRIRLIDAVFTPLCAKP*
Ga0068859_1030453033	3300005617	Switchgrass Rhizosphere	TDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR*
Ga0068851_104526241	3300005834	Corn Rhizosphere	MHTDTQDAMRTALRQAGAITVVEGRHSIRQRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR*
Ga0068870_108197021	3300005840	Miscanthus Rhizosphere	RKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTACCARL*
Ga0068863_1011634421	3300005841	Switchgrass Rhizosphere	MTMHTETQDAMRTALRQAGAITAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMFTPPALRH*
Ga0068863_1013554291	3300005841	Switchgrass Rhizosphere	LRQAGAITAVDGQHSIRQRLGVAHQLYDAMLQLEPVDRARRIRLIDAVFTPLCAKP*
Ga0068863_1019183122	3300005841	Switchgrass Rhizosphere	MRTKTEDEMRTALRQAAAITAVDGEHSMRQRLGVAHRLYDAMLLLEPGDRARRIQLIDSMFTPPGRDSEHRPGDL*
Ga0068858_1018539823	3300005842	Switchgrass Rhizosphere	TAPILPAGDHKAMRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTPCCARP*
Ga0066652_1002373521	3300006046	Soil	RQAGAIAIVEGRHSIRQRLSLAHDLYDALLRLPREERQGRVDLIDAIFPPPPASRR*
Ga0097621_1000410433	3300006237	Miscanthus Rhizosphere	MTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMFTPPALRH*
Ga0105243_101491632	3300009148	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDEVFAPSARGSGRRRRDP*
Ga0105242_102754943	3300009176	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQHSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDEVFAPSARGSGRRRRDP*
Ga0105242_105575542	3300009176	Miscanthus Rhizosphere	MQTKTEDEIRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLRLEPVDRARRIRLIDAVFTPLCAKP*
Ga0105248_129128651	3300009177	Switchgrass Rhizosphere	MVTACILAVGDQKTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLMQPEARARRIRLIDA
Ga0134123_117410531	3300010403	Terrestrial Soil	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASR
Ga0150984_1219520583	3300012469	Avena Fatua Rhizosphere	MRTALRQAAAIAAVGGQHSIRQRLGLAHGLYNAMLLLEPNERARRVRLIDAVFSPRSKRPEHTRLNR*
Ga0157292_103553051	3300012900	Soil	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDAVFAPSARGSGRRRRDP*
Ga0157290_104630411	3300012909	Soil	MQTEMQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEARARRIRLIDAVFPPLASR
Ga0157302_103232961	3300012915	Soil	PILPAGDHKAMRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTPCCARL*
Ga0157378_118614511	3300013297	Miscanthus Rhizosphere	MTMHTETQDAMRTALRQAGALTAVGGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMFTPPALRH*
Ga0163162_100811034	3300013306	Switchgrass Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDERARRIRLIDAVFAPSGRGSGRRRRDP*
Ga0163162_104871242	3300013306	Switchgrass Rhizosphere	MQTKTEDEIRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLRLEPVDRARRIRLIDAVFTPLCGKP*
Ga0132258_102004435	3300015371	Arabidopsis Rhizosphere	VTACILAAGEQKAMHTEAQDAMRTALRQAGAIVAVDGRYSIRQRLCLAHHLYDALLLLQPAERARRIRLIDAMFTPAAPRL*
Ga0132258_107812404	3300015371	Arabidopsis Rhizosphere	MRTKTEEEMRTALRQAGTIVAVDGRHSIQQRLGLAHALYDAMLLLEPEERVRRVRLIDAVFPPACAARTRSTGIRP*
Ga0132258_110414081	3300015371	Arabidopsis Rhizosphere	MLAARSYDTMQTKMEKEMRIALRQAGAIAAVQGKHSIRQILGVAHQLYDAMLLLEPADRARRIRLIDAMFAPSARGFERRRTSP*
Ga0132258_110625643	3300015371	Arabidopsis Rhizosphere	MQTKAEEEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLEPDDRARRIRLIDAVFTPSARGSGRTRRDP*
Ga0132256_1035026483	3300015372	Arabidopsis Rhizosphere	QKAMHTEAQDAMRTALRQAGAIVAVDGRYSIRQRLCLAHHLYDALLLLQPAERARRIRLIDAMFTPAAPRL*
Ga0132255_1062630761	3300015374	Arabidopsis Rhizosphere	MQTKAEEEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLEPDDRARRIRLIDAVFTPSARGSERRHQEP*
Ga0163161_113154131	3300017792	Switchgrass Rhizosphere	ILRGGDEGRMHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR
Ga0066662_115823541	3300018468	Grasslands Soil	MVNDTKGMRTALRQAGAIAAVDGQPLTRQRLGLAHRLYDAMLELGPEQRSRRIRLIDAMFPPSAARRSAP
Ga0190274_100856874	3300018476	Soil	MQTEMQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRICLIDTMFPPLAPRL
Ga0190274_103721283	3300018476	Soil	MVTACILAEGEQKAMHTETQDAMRTALRQAGAIAAVEGQYSIRQRLRLAHHLYDAMLLLQPDARARRIRLIDAIFTPAAPRL
Ga0190271_100952743	3300018481	Soil	MHTETQDAMRTALRQAGAIAAVEGQYSIRQRLRLAHHLYDAMLLLQPDARARRIRLIDAIFTPAAPRL
Ga0190271_104541851	3300018481	Soil	MYTETQDAMRIALRQAGAIAAVDGQHSIRQRLGLAHRLYDAMLALQPEERARRVRLIDAMFTPPSLRL
Ga0190271_108828412	3300018481	Soil	MQTKTEDEMRTALRQAGAITAVDGHYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDAVFTPSARGAGRRRRDP
Ga0207666_10254771	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MVTACILAVGDQKTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLMQPEARARRIRLIDAVFTSAAPRP
Ga0207656_104508101	3300025321	Corn Rhizosphere	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR
Ga0207682_100074136	3300025893	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDEVFAPSARGSGRRRRDP
Ga0207682_100482853	3300025893	Miscanthus Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLLKPEERARTIRLIDTVFPPLAPRYERTRRSP
Ga0207710_106823831	3300025900	Switchgrass Rhizosphere	PVVTAGILAAGVQMTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMFTPPALRH
Ga0207705_110968082	3300025909	Corn Rhizosphere	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDA
Ga0207681_102358003	3300025923	Switchgrass Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLMKPEERARTIRLIDTVFPPLAPRYERTRRSP
Ga0207650_104737642	3300025925	Switchgrass Rhizosphere	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPAWRR
Ga0207650_105428141	3300025925	Switchgrass Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTPCCARL
Ga0207650_112982781	3300025925	Switchgrass Rhizosphere	MHTEMQDAMRTALRQAGAISAVDGPYSIRERLHLAHQLYDAMLLMKPEERARTIRLIDTVFPPLAPRYERTRR
Ga0207659_105202491	3300025926	Miscanthus Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLLLEPDDRARRVRLIDAVFTACCARL
Ga0207659_107550672	3300025926	Miscanthus Rhizosphere	MQTKTEDEMRTALRQAGAITAVDGQYSIRQRLVVAHQLYDAMLLLGPDDRARRIRLIDAVFTPSARGSGRTRRDP
Ga0207701_105026404	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	HSEDEMRTALRQAGAIAAVGGEHSIRKRLTLAHRLYDAMLLLEPVERARRVRLIDAVFTPSPPASERRRREP
Ga0207644_102140663	3300025931	Switchgrass Rhizosphere	MHTDTQDAMRTALRQAGAITVVDGRHSIRQRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR
Ga0207644_114586541	3300025931	Switchgrass Rhizosphere	MRTKTEDEMRTALRQAGAITAVDGQYSIRQRLGVAHQLYDAMLQLEPVDRARRIRLIDAVFTPLCAKP
Ga0207644_118152621	3300025931	Switchgrass Rhizosphere	MTMHTETQDAMRTALRQAGAITAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMF
Ga0207686_112016502	3300025934	Miscanthus Rhizosphere	AGAITAVDGQHSIRQRLGVAHQLYDAMLRLEPVDRARRIRLIDAVFTPLCAKP
Ga0207704_114322551	3300025938	Miscanthus Rhizosphere	SEDEMRTALRQAGAIAAVGGEHSIRKRLTLAHRLYDAMLLLEPVERARRVRLIDAVFTPSPPASERRRREP
Ga0207704_115829431	3300025938	Miscanthus Rhizosphere	MHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLMQPEARARRIRLIDAVFTSAAPRP
Ga0207691_105111791	3300025940	Miscanthus Rhizosphere	MSMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAM
Ga0207691_110893521	3300025940	Miscanthus Rhizosphere	MQTKTEDEIRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLQLEPVDRARRIRLIDAVFTPLCAKP
Ga0207711_101850152	3300025941	Switchgrass Rhizosphere	MTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMFTPPALRH
Ga0207661_100285045	3300025944	Corn Rhizosphere	MPTKTDDEMRIALRQACAITAVGGQYSIRQRLGVAHRLYDAMLLLEPDDRARRIRLIDAVFTPSARAPEQTGRDPCT
Ga0207679_108066972	3300025945	Corn Rhizosphere	MHIDTQDAMRTALRQAGAITVVDGRHSIRQRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRL
Ga0207651_106847671	3300025960	Switchgrass Rhizosphere	MTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLVLAHRLYDAMLLLQPEERARRIRLIDAMFTP
Ga0207658_105479271	3300025986	Switchgrass Rhizosphere	MHTDTQDAMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRANLIDAIFPPPPASRR
Ga0207677_112042251	3300026023	Miscanthus Rhizosphere	MRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASR
Ga0207641_111309433	3300026088	Switchgrass Rhizosphere	MRTRKEDEMRTALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLQLEPVDRARRIRLID
Ga0207641_112973921	3300026088	Switchgrass Rhizosphere	ALRQAGAITAVDGQHSIRQRLGVAHQLYDAMLQLEPVDRARRIRLIDAVFTPLCAKP
Ga0207648_117281853	3300026089	Miscanthus Rhizosphere	AMRTALRQAGAITIVDGRHSIRDRLSLAHDLYDALLRLPREERARRVNLIDAIFPPPPASRR
Ga0247828_100260295	3300028587	Soil	MQTEMQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRIRLIDTMFPPLAPRL
Ga0247828_111582572	3300028587	Soil	MRTESEDEVRTALRQAGAIAAVDGQYSIRQRPGLAHRLYDAMLLLHFEERARRIRLIDAVFTPSEPRL
Ga0310888_100763825	3300031538	Soil	DMQTEMQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRICLIDTMFPPLAPRL
Ga0310900_108321493	3300031908	Soil	DAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLLQPEERARRIRLIDAVFTSAAPRP
Ga0310900_113387523	3300031908	Soil	MHTETQHAMRTALRQADAIADVDGQYSIRQRLRLAHDLYDAMLRLEPEERARRNRLMDAVFAPLAARP
Ga0308175_1012774291	3300031938	Soil	MHTETQDAMRTALRQAGAITVVDGRHSIRQRLSLAHDLYDALLRLPREERARRVDLLDAIFPPPPASRR
Ga0308174_100293246	3300031939	Soil	MHTETQDAMRTALRQAGAITVVDGRHSIRQRLSLAHDLYDALLRLPREERARRVDLIDAIFPPPPASRR
Ga0310889_105257723	3300032179	Soil	MQDAMRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRIRLIDTMFPPLAPRL
Ga0247829_105903202	3300033550	Soil	MVTACILAVGDQKTMHTETQDAMRTALRQAGAIAAVDGQHSIRQRLHLAHRLYDAMLLLQPEERARRIRLIDAVFTSAAPRP
Ga0314782_017465_991_1173	3300034661	Soil	MRTALRQAGAISAVDGPYSIRERLRLAHQLYDAMLLLQPEERARRIRLIDTMFPPLAPRL
Ga0314800_006235_1_207	3300034675	Soil	MQTEMQDAMRTALRQAGAISAVDGPYSIRERLRLSHQLYDAMLLLQPEERARRICLIDTMFPPLAPRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087374

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences