Metagenome Family F087257

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087257
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	62 residues
Representative Sequence	TDQRNTVGAADPSGDNDGADVAGDPETGGTCTSSFTTCFDGTGGLDQNIYSATVTP
Number of Associated Samples	94
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	95.45 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (79.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (30.909 % of family members)
Environment Ontology (ENVO)	Unclassified (39.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.57% β-sheet: 0.00% Coil/Unstructured: 96.43%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08282	Hydrolase_3	5.45
PF05899	Cupin_3	3.64
PF08669	GCV_T_C	3.64
PF07228	SpoIIE	1.82
PF01850	PIN	1.82
PF00296	Bac_luciferase	1.82
PF02594	DUF167	1.82
PF00990	GGDEF	0.91
PF01637	ATPase_2	0.91
PF07702	UTRA	0.91
PF11774	Lsr2	0.91
PF12801	Fer4_5	0.91
PF13683	rve_3	0.91
PF01709	Transcrip_reg	0.91
PF12840	HTH_20	0.91
PF00881	Nitroreductase	0.91
PF01988	VIT1	0.91
PF13343	SBP_bac_6	0.91
PF01381	HTH_3	0.91
PF00144	Beta-lactamase	0.91
PF00005	ABC_tran	0.91
PF02142	MGS	0.91
PF08327	AHSA1	0.91
PF03561	Allantoicase	0.91
PF01741	MscL	0.91
PF12323	HTH_OrfB_IS605	0.91
PF00400	WD40	0.91
PF03795	YCII	0.91
PF00795	CN_hydrolase	0.91
PF13561	adh_short_C2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	5.45
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	5.45
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	5.45
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	5.45
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	5.45
COG1872	Uncharacterized conserved protein YggU, UPF0235/DUF167 family	Function unknown [S]	1.82
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.82
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.91
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	0.91
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.91
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	General function prediction only [R]	0.91
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.91
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.91
COG1373	Predicted ATPase, AAA+ superfamily	General function prediction only [R]	0.91
COG4266	Allantoicase	Nucleotide transport and metabolism [F]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.09 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.09 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.09 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	15.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.55 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	3.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.55 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.73 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	2.73 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	2.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	2.73 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.91 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.91 %
Saccharomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.55 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	2.73 %
Mesorhizobium sp. B2-3-11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-3-11	0.91 %
Saccharomonospora halophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora halophila	0.91 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12562826	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300000956\|JGI10216J12902_106139483	Not Available	507	Open in IMG/M
3300001535\|A3PFW1_10165177	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300001536\|A1565W1_10021067	Not Available	703	Open in IMG/M
3300005179\|Ga0066684_10050701	All Organisms → cellular organisms → Bacteria	2377	Open in IMG/M
3300005327\|Ga0070658_10454121	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300005329\|Ga0070683_101529635	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005339\|Ga0070660_100852578	Not Available	767	Open in IMG/M
3300005435\|Ga0070714_102140506	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005440\|Ga0070705_100955664	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	693	Open in IMG/M
3300005445\|Ga0070708_101584276	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005454\|Ga0066687_10687223	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005467\|Ga0070706_100173157	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2015	Open in IMG/M
3300005468\|Ga0070707_100112598	All Organisms → cellular organisms → Bacteria	2639	Open in IMG/M
3300005535\|Ga0070684_101384583	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005541\|Ga0070733_10450799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharomonospora → Saccharomonospora halophila	859	Open in IMG/M
3300005555\|Ga0066692_10328828	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300005575\|Ga0066702_10938395	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300006358\|Ga0068871_101521460	Not Available	632	Open in IMG/M
3300006794\|Ga0066658_10840767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300006854\|Ga0075425_101700218	Not Available	710	Open in IMG/M
3300006903\|Ga0075426_10910184	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300009089\|Ga0099828_10869012	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300009089\|Ga0099828_11280689	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300009089\|Ga0099828_11978771	Not Available	510	Open in IMG/M
3300009090\|Ga0099827_10396853	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300009090\|Ga0099827_11908401	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300009090\|Ga0099827_11953765	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300009400\|Ga0116854_1112732	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300010043\|Ga0126380_11961751	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300010048\|Ga0126373_10952782	Not Available	923	Open in IMG/M
3300010358\|Ga0126370_10329882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1224	Open in IMG/M
3300010360\|Ga0126372_12081199	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300010361\|Ga0126378_10320700	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300010376\|Ga0126381_100111565	All Organisms → cellular organisms → Bacteria	3518	Open in IMG/M
3300010397\|Ga0134124_12075847	Not Available	606	Open in IMG/M
3300011269\|Ga0137392_10437292	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300012008\|Ga0120174_1021212	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300012011\|Ga0120152_1083199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	941	Open in IMG/M
3300012096\|Ga0137389_11233332	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300012199\|Ga0137383_10196520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1478	Open in IMG/M
3300012201\|Ga0137365_10525613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300012206\|Ga0137380_11334010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300012207\|Ga0137381_10763984	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	839	Open in IMG/M
3300012207\|Ga0137381_10903875	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300012209\|Ga0137379_11066449	Not Available	713	Open in IMG/M
3300012209\|Ga0137379_11715034	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300012210\|Ga0137378_10035853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	4416	Open in IMG/M
3300012210\|Ga0137378_10986749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	756	Open in IMG/M
3300012210\|Ga0137378_11649147	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012350\|Ga0137372_10960265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300012356\|Ga0137371_10260547	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300012356\|Ga0137371_11406094	Not Available	511	Open in IMG/M
3300012357\|Ga0137384_10003801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	12059	Open in IMG/M
3300012357\|Ga0137384_11192508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300012359\|Ga0137385_10975686	Not Available	699	Open in IMG/M
3300012359\|Ga0137385_11151640	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300012361\|Ga0137360_11104486	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300012582\|Ga0137358_10145218	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1615	Open in IMG/M
3300012923\|Ga0137359_11365377	Not Available	597	Open in IMG/M
3300012971\|Ga0126369_12774960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300013308\|Ga0157375_11990890	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300013308\|Ga0157375_12416525	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300013763\|Ga0120179_1063001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	836	Open in IMG/M
3300013765\|Ga0120172_1126044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614	Open in IMG/M
3300013772\|Ga0120158_10505931	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300015241\|Ga0137418_10870989	Not Available	666	Open in IMG/M
3300016319\|Ga0182033_11620414	Not Available	585	Open in IMG/M
3300016319\|Ga0182033_12223006	Not Available	500	Open in IMG/M
3300016387\|Ga0182040_10696315	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300018433\|Ga0066667_12257237	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300019888\|Ga0193751_1007349	All Organisms → cellular organisms → Bacteria	6004	Open in IMG/M
3300020579\|Ga0210407_10259153	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355	Open in IMG/M
3300020581\|Ga0210399_10297111	All Organisms → cellular organisms → Bacteria → Proteobacteria	1348	Open in IMG/M
3300021170\|Ga0210400_10179307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1717	Open in IMG/M
3300021405\|Ga0210387_10647961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	938	Open in IMG/M
3300021559\|Ga0210409_10071337	All Organisms → cellular organisms → Bacteria	3231	Open in IMG/M
3300021560\|Ga0126371_12823648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. B2-3-11	589	Open in IMG/M
3300022691\|Ga0248483_121774	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300024288\|Ga0179589_10603252	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300025910\|Ga0207684_10250309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1529	Open in IMG/M
3300025919\|Ga0207657_10434373	Not Available	1031	Open in IMG/M
3300025922\|Ga0207646_11842630	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300025929\|Ga0207664_10275018	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300026223\|Ga0209840_1085844	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300026494\|Ga0257159_1039330	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	796	Open in IMG/M
3300026498\|Ga0257156_1065629	Not Available	751	Open in IMG/M
3300026557\|Ga0179587_10902140	Not Available	583	Open in IMG/M
3300027874\|Ga0209465_10606918	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300027882\|Ga0209590_10712122	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300027903\|Ga0209488_10486332	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300028536\|Ga0137415_10251002	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300028716\|Ga0307311_10190129	Not Available	600	Open in IMG/M
3300031057\|Ga0170834_109081882	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300031057\|Ga0170834_113818775	Not Available	656	Open in IMG/M
3300031231\|Ga0170824_111995333	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031231\|Ga0170824_119683198	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031544\|Ga0318534_10156239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1317	Open in IMG/M
3300031668\|Ga0318542_10283197	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031682\|Ga0318560_10528742	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031682\|Ga0318560_10542162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	630	Open in IMG/M
3300031713\|Ga0318496_10178231	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300031718\|Ga0307474_10663178	Not Available	823	Open in IMG/M
3300031744\|Ga0306918_11434996	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031765\|Ga0318554_10712290	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300031833\|Ga0310917_10598915	Not Available	748	Open in IMG/M
3300031939\|Ga0308174_10699690	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300032043\|Ga0318556_10652267	Not Available	548	Open in IMG/M
3300032074\|Ga0308173_10414478	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300032261\|Ga0306920_100766024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1419	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.73%
Host-Associated	Host-Associated	7.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.73%
Plants	Host-Associated → Plants	7.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.36%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.82%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	30.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.27%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013763	Permafrost microbial communities from Nunavut, Canada - A15_65cm_0M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022691	Soil microbial communities from Calhoun CZO, South Carolina, United States - 60cm depth	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_125628262	3300000789	Soil	GDYITVAAQGNTIGAVWTDQRNTVGAVDPTGDNDGADVAGDPETGGTCTSSLTTCFDLTGGLDQNIYGAAILH*
JGI10216J12902_1061394831	3300000956	Soil	GDYITVAAVGSTVGATWTDQRNTVPAADPSGDNDGADVAGDPETGGSCTSSFTTCFDGTGGLDQNIYSAAITP*
A3PFW1_101651773	3300001535	Permafrost	LEVRLEKGHSAADWSTVGNIVAAVWTDSRNVVGAADLTGDNDGDDVAGDPETGGTCTSSFTTCFDVTGGLDQNIYTSSITP*
A1565W1_100210671	3300001536	Permafrost	GDYIMVSAVGNIVAAVWTDSQNVVGAADLAGKDNDGDDVAGDPETGGTCTSSFTTCFDVTGGLDQNIYTSSITP*
Ga0066684_100507011	3300005179	Soil	RRIPFFGDYIMVSAVGGSIAAVWTDSRDVVGAPDATGDNDNDDVAGDPETGGTCTSSLNACFDGTGGLDQNIYTTNV*
Ga0070658_104541211	3300005327	Corn Rhizosphere	FFGDYITVAAQGDTVGAVWTDQRDTVGAPDPNGDDDGADIAGDPETGGKCTDVATTCFDLTGGLDQNIYAATIAP*
Ga0070683_1015296352	3300005329	Corn Rhizosphere	NTIGAVWTDQRDTVGAADTAGDDDGADVAGDPETGGTCTSSLDTCFDNTGGLDQNIYSAPISP*
Ga0070660_1008525782	3300005339	Corn Rhizosphere	WTDQRNTVGAADPKGDNDGADIAGDPETGGKCTDAVSTCFDGTGGLDQNIYTALITP*
Ga0070714_1021405062	3300005435	Agricultural Soil	QFGGRHVAFFGDYITASAVGDTIGAVWTDQRDAVTAPETVAGADNDSADIAGDPETGGACTSALTSCFDSTGGLDQNVYSASITP*
Ga0070705_1009556641	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	TVGAADPSGDNDGADVAGDPETGGTCTSSFTTCFDGTGGLDQNIYAAPITP*
Ga0070708_1015842762	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AAQGGTVGVTWTDQRNTVGAPDPSGDKDGADVAGDPETGGTCTSSFTACFDGTGGLDQNIYSATVTP*
Ga0066687_106872231	3300005454	Soil	YITVAAQGDTIGAVWIDQRNTVGAPDTSADNDGADVAGDPETGGTCTSSLDTCFDGTGGLDQNIYSAAITP*
Ga0070706_1001731574	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	FGDYITVAAQGDTIGAVWTDQRNTVGAADASGDNDGADVAGDPETGGTCTSSFSTCFDGTGGLDQNIYGAKIAP*
Ga0070707_1001125981	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TWTDQRNTVGAPDPAGDKDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSATITP*
Ga0070684_1013845832	3300005535	Corn Rhizosphere	TVGAADTAGDDDGADVAGDPETGGTCTSSLDTCFDNTGGLDQNIYSAPISP*
Ga0070733_104507991	3300005541	Surface Soil	WTDQRNTAGASDASGDNDGADVNGDPETGGTCTSSLTTCFDTTGGLDQNIYVAAITP*
Ga0066692_103288282	3300005555	Soil	VGAADPTKDNDNDDVAGDPETGGTCTSSFNACFDATGGLDQNIYTANLSH*
Ga0066702_109383952	3300005575	Soil	GSIAAVWTDSRDVVGAPDATGDNDNDDVAGDPETGGTCTSSLNACFDGTGGLDQNIYTTNV*
Ga0068871_1015214602	3300006358	Miscanthus Rhizosphere	VAAADPTGDDDGADVAGDPETGGTCTSSLDACFDATGGLDQNIYGAPITP*
Ga0066658_108407672	3300006794	Soil	GAADTSGDNDGADVAGDPETGGTCTSSLNTCFDLTGGLDQNIYAATITP*
Ga0075425_1017002181	3300006854	Populus Rhizosphere	VGGSIQAVWTDSRDVVAGTETAGHDNDGDDVKGDPETGGTCTSSFTTCFDGTGGLDQNIYSQVIS*
Ga0075426_109101843	3300006903	Populus Rhizosphere	FFGDYIMVSAVGGSIAAVWTDSRNVATAADSTSDNDSDDVAGDPETGGSCKSSFTDCFDGTGGLDQNIYTTNV*
Ga0099828_108690121	3300009089	Vadose Zone Soil	AVGSTVAAAWTDARNVVGAADPAPKDNDGDDVAGDPETGGTCTSSLTACFDGTGGLDQNIYTANLSH*
Ga0099828_112806892	3300009089	Vadose Zone Soil	WTDQRNTVRSADPSGDMDGADVAGDPETGGTCTSSLTTCFDTTGGLDQNIYSAAITP*
Ga0099828_119787711	3300009089	Vadose Zone Soil	TVAAQGNTIGAVWTDQRNTVGAADTSADNDGADVAGDPETGGSCTSSLDDCFDNTGGLDQNIYGAKITP*
Ga0099827_103968531	3300009090	Vadose Zone Soil	WTDARNVVGAADPTKDNDNDDVAGDPETGGTCTSSFTACFDGTGGLDQNIYTANLSH*
Ga0099827_119084012	3300009090	Vadose Zone Soil	PDTSGDNDVADVAGDPETGGTCTSSLTTCFDSTGGLDQNIYSAVITP*
Ga0099827_119537651	3300009090	Vadose Zone Soil	FFGDYITVAAQGNTIGAVWTDQRNTVGAADPSGDKDSADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSAAIAP*
Ga0116854_11127322	3300009400	Soil	MASAVGNAIGAVWTDSRNVVPGVDAAGTDMDNDDVAGDPETVGGTCTSSLSPCFDGTGGLDQNIYTASVTP*
Ga0126380_119617512	3300010043	Tropical Forest Soil	FGDYLTLAAQGGTVGLTWTDQRNTVGAPDPKGDNDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSATITP*
Ga0126373_109527821	3300010048	Tropical Forest Soil	NTVGAPDLPTGDNDGADVAGSPETGGTCTSSLTNCFDSTGGLDQNIYAAAITP*
Ga0126370_103298821	3300010358	Tropical Forest Soil	DYITVAAQGNTIGTVWTDQRNTVGAADPSADNDGADVAGDPETGGTCTSSLTACFDGTGGLDQNIYSSVITP*
Ga0126372_120811992	3300010360	Tropical Forest Soil	NTIGTVWTDQRNTVGAADPSADNDGADVAGDPETGGTCTSSLTACFDGTGGLDQNIYSSVITP*
Ga0126378_103207001	3300010361	Tropical Forest Soil	TVGAADAAGDNDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYVATIRP*
Ga0126381_1001115654	3300010376	Tropical Forest Soil	TDQRNTVGATDASGDNDNADVAGSPETGGSCTSSFTTCFDGTGGLDQNIYSAVITP*
Ga0134124_120758472	3300010397	Terrestrial Soil	FGDYITVAAQGNTVGAVWTDQRNTAAAPDPSADNDGADVSGDPEAGGACTSSLNTCFDGTGGLDQNIYGATITP*
Ga0137392_104372923	3300011269	Vadose Zone Soil	DASGDNDGADVAGDPETGGTCTSSFTTCFDGTGGLDQNIYTAAITP*
Ga0120174_10212121	3300012008	Permafrost	LEQFGGRRVPFFGNYITVAAQEDTIGAVWTEQRDAALGTESTGSDQDNADVAGDPETVGGTCTSSLTDCFDTTPGLNQNIYAASITP*
Ga0120152_10831991	3300012011	Permafrost	TDQRDTVAAADTSADNDGADVAGDPETGGTCTSTLTTCFDSTGGLDQNIYAAGITP*
Ga0137389_112333321	3300012096	Vadose Zone Soil	QRNTVGAPDPSGDKDGADVAGDPETGGTCTSSFTACFDATGGLDQNIYSATVTP*
Ga0137383_101965201	3300012199	Vadose Zone Soil	QGDTIGVVWTDQRNTVGAADPSGDNDGADVAGDPETGGTCTSSLNTCFDGTGGLDQNIYSAAITP*
Ga0137365_105256131	3300012201	Vadose Zone Soil	AAQGSTIGAVWTDQRNTVGAADASGDNDGADVAGDPETGGTCTSSLDTCFDLTGGLDQNIYAATITP*
Ga0137380_113340101	3300012206	Vadose Zone Soil	TAGAPDPSGDNDGADVAGDPETGGTCTSSLDACFDGTGGLDQNIYSAAITP*
Ga0137381_107639842	3300012207	Vadose Zone Soil	GAVWTDQRNTVGAADASADNDGADVAGDPETGGTCTSSLTTCFDGTGCLDQNIYSATITP
Ga0137381_109038752	3300012207	Vadose Zone Soil	VPAADSSADNDSADVAGDPETGGACTTTLDTCFDGTGGLDQNIYAAGITP*
Ga0137379_110664492	3300012209	Vadose Zone Soil	ATDASGDNDGADVAGDPETGGNCTSSLDTCFDGTGGLDQNIYGAAITP*
Ga0137379_117150341	3300012209	Vadose Zone Soil	QGGTVGVTWTDQRNTVGAPDPAGDNDGADVKGDPETGGTCKSSLDTCFDGTGGLDQNIYSAVITP*
Ga0137378_100358531	3300012210	Vadose Zone Soil	DPTGDNDGADVAGDPEAGGSCTSSLTTCFDLTGGLDQNIYTATITP*
Ga0137378_109867491	3300012210	Vadose Zone Soil	PDPSGDNDGADVAGDPETGGTCTSSLDACFDGTGGLDQNIYSAAITP*
Ga0137378_116491471	3300012210	Vadose Zone Soil	LTLAAQGGTVGVTWTDQRNTVGAPDPAGDKDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSAVITP*
Ga0137372_109602651	3300012350	Vadose Zone Soil	GAADTTGDNDGADVAGDPETGGTCTSSLDACFDGTGGLDQNIYSAAITP*
Ga0137371_102605471	3300012356	Vadose Zone Soil	TDASGDNDGAGIAGDPETGGNCTSSLDTCFDGTGGLDQNIYGATITP*
Ga0137371_114060941	3300012356	Vadose Zone Soil	DQRNTVGAADTTGDNDGADVAGDPETGGTCTSSLDACFDGTGGLDQNIYSAAITP*
Ga0137384_100038011	3300012357	Vadose Zone Soil	GDYITVAAQGNTIGVVWTDQRNTVGAPDASGDNDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSAVITP*
Ga0137384_111925081	3300012357	Vadose Zone Soil	DQRNTVGAADSSGDNDGADVSGDPETGGSCTSSLTTCFDGTGGLDQNIYSATITP*
Ga0137385_109756861	3300012359	Vadose Zone Soil	LAAQGGTVGVTWTDQRNTVGAPDPAGDKDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSAVITP*
Ga0137385_111516402	3300012359	Vadose Zone Soil	QGGTVGVTWTDQRNTVGAPDPAGDNDGADVKGDPETGGTCTSSLDTCFDGTGGLDQNIYSAVITP*
Ga0137360_111044861	3300012361	Vadose Zone Soil	FFGDYITVAAQGNTIGAVWTDQRNTVGTPDPSGDNDGADVSGDPETGGSCTSSFTTCFDTTGGLDQNIYSALITP*
Ga0137358_101452183	3300012582	Vadose Zone Soil	VIQYVRAVGVADTSSDNDGADVKGDPETGGACTSPFTTCFDGTGGLDQNIYSATITP*
Ga0137359_113653771	3300012923	Vadose Zone Soil	IVAAVWTDARDVVGAADLAGDKDGDDVAGDPETGGACTSSLNACFDGTGGLDQNIYTANLSN*
Ga0126369_127749601	3300012971	Tropical Forest Soil	YITVAAQGNTIGTVWTDQRNTVGAPDPSGDNDGADVAGSPETGGTCTSSLTTCFDGTGGLDQNIYSAVITP*
Ga0157375_119908902	3300013308	Miscanthus Rhizosphere	GAADPTGDDDGADVAGDPETGGTCTSSLDTCFDNTGGLDQNIYSAPISP*
Ga0157375_124165252	3300013308	Miscanthus Rhizosphere	TDQRDTVGAADTSGDNDGADVAGDPETGGTCTSSLTICFDGTGGLDQNIYAAPITP*
Ga0120179_10630012	3300013763	Permafrost	VWTDQRDAAVGTEPAGTDQDGADVAGDPETVGGTCTSSLTDCFDTTFGLDQNIYASTITP
Ga0120172_11260441	3300013765	Permafrost	VGAVWTDQRDTVGAADSSATADNDGADVAGDPETGGTCTSSLTSCFDGTGGLDQNIYSAAITP*
Ga0120158_105059311	3300013772	Permafrost	VWTDARDVVGAADPTADNDNDDVAGDPETGGACGSSLDACFDATGGLDQNIYTANLSN*
Ga0137418_108709892	3300015241	Vadose Zone Soil	AAVWTDARDVVGAADPAPKGDNDGDDVAGDPETGGTCTSSLTPCFDGTGGLDQNIYTANLTQ*
Ga0182033_116204142	3300016319	Soil	DQRNAVLAADPNGDNDSADVAGDPETGGSCTSSFTTCFDGTGGLDQNIYSAAVTP
Ga0182033_122230061	3300016319	Soil	GTVWTDQRNTVGAADPNGDNDGADISGDPETGGTCTSSLTTCFDGTGGLDQNIYTATITP
Ga0182040_106963151	3300016387	Soil	GTVWTDQRNTVGAADPNGDNDGADIAGDPETGGTCTSSLTTCFDGTGGLDQNIYTALISP
Ga0066667_122572371	3300018433	Grasslands Soil	AVWTDQRDTVAAPDPGGDNDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSAPISP
Ga0193751_10073494	3300019888	Soil	VIQYVRAAGVADTSSDNDGADVKGDPETGGACTSSFSTCFDGTGGLDQNIYSATITP
Ga0210407_102591531	3300020579	Soil	IIGVSWTDQRNTVGAPDPSGDNDGADIAGDPETGGTCTSSLTTCFDGTGGLDQNIYATTITP
Ga0210399_102971111	3300020581	Soil	VGSPDPSGDNDGADIAGDPETGGTCTSSFSTCFDGTGGLDQNIYATTITP
Ga0210400_101793071	3300021170	Soil	GNIIGVSWTDQRNTVGAPDPSGDNDGADIAGDPETGGTCTSSFSTCFDGTGGLDQNIYATTITP
Ga0210387_106479612	3300021405	Soil	VGAPDPSGDNDGADIAGDPETGGTCTSSLTTCFDGTGGLDQNIYATTITP
Ga0210409_100713374	3300021559	Soil	QGDIIGAAWTDQRDTVGAADTSGDNDGADVAGDPETGGACTRSLNTCFDLTGGLDQNIYATTITP
Ga0126371_128236481	3300021560	Tropical Forest Soil	GDYITVAAQGNTIGAVWTDQRNTVGAPDPSGDGDNADVAGSPETGGSCTSSLTTCFDTTGGLDQNIYSAVITP
Ga0248483_1217741	3300022691	Soil	MCIRDSLTGDKDNDDVAGDPETGGLCASAFTPCFDGTGGLDQNIYTASITP
Ga0179589_106032522	3300024288	Vadose Zone Soil	AQGGTVGLTWTDQRNTVGAPDPAGDNDGADVAGDPETGGTCTSSFTTCFDGTGGLDQNIYSATITP
Ga0207684_102503091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AADASGDNDGADVAGDPETGGTCTSSFSTCFDGTGGLDQNIYGAKIAP
Ga0207657_104343732	3300025919	Corn Rhizosphere	WTDQRNTVGAADPKGDNDGADIAGDPETGGKCTDAVSTCFDGTGGLDQNIYTALITP
Ga0207646_118426302	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GDYITVAAEGDTVGAVWTDQRNTIGVADPSGDKDGADVAGDPETGGSCTSSLDTCFDGTGGLDQNIYGATITP
Ga0207664_102750181	3300025929	Agricultural Soil	EQFGGRHVAFFGDYITASAVGDTIGAVWTDQRDAVTAPETVAGADNDSADIAGDPETGGACTSALTSCFDSTGGLDQNVYSASITP
Ga0209840_10858443	3300026223	Soil	GSSIAAVWTDSRNVVGAADLTGDNDGDDVAGDPETGGTCTSSFTTCFDGTGGLDQNIYTANVAS
Ga0257159_10393302	3300026494	Soil	VIQYVRAAGVADTSSDNEGADVKGDPETGGACTSSFSTCFDGTGGLDQNIYSATITP
Ga0257156_10656292	3300026498	Soil	IQYVRAAGVADTSSDNDGADVKGDPETGGACTSSFSTCFDGTGGLDQNIYSATITP
Ga0179587_109021402	3300026557	Vadose Zone Soil	GRQVPFFGDYITIAAAGDTIGADWTDQRDAATAADTAGDNDGADVAGDPETGGTCTSSFTACFDGTGGLNQNIYATTITP
Ga0209465_106069181	3300027874	Tropical Forest Soil	QRNTVGAADPSGDNDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYDATVTP
Ga0209590_107121221	3300027882	Vadose Zone Soil	GAADPTKDNDNDDVAGDPETGGTCTSSFTACFDATGGLDQNIYTANLSH
Ga0209488_104863322	3300027903	Vadose Zone Soil	AVGSTVAAAWTDARNVVGAADPAPKDNDGDDVAGDPETGGTCTSSLTACFDGTGGLDQNIYTANLSH
Ga0137415_102510023	3300028536	Vadose Zone Soil	GDYITVAAQGDIIGASWTDQRNTVAAADASADNDGADVAGDPETGGTCTSSLNTCFDLTGGLDQNIYAAKIAP
Ga0307311_101901291	3300028716	Soil	VGAADPSGDNDGADVAGDPETGGNCTSSFTTCFDGTGGLDQNIYSAPITP
Ga0170834_1090818821	3300031057	Forest Soil	FFGDYITVAAQGDTIGAVWTDQRNTVGAPDPSGDNDAADIAGDPETGGTCTSSLNTCFDLTGGLDQNIYAATITP
Ga0170834_1138187751	3300031057	Forest Soil	AADPSGDNDGADVAGDPETGGTCTSSFTTCFDGTGGLDQNIYSATITP
Ga0170824_1119953331	3300031231	Forest Soil	IGTVWTDQRNTVGAPDPSGDNDGADVAGDPETGGTCTSSLTTCFDGTGGLDQNIYSATIT
Ga0170824_1196831982	3300031231	Forest Soil	TDQRNTVGAADPSGDNDGADVAGDPETGGTCTSSFTTCFDGTGGLDQNIYSATVTP
Ga0318534_101562394	3300031544	Soil	VGAADPNADNDGADVAGDPETGGTCTSSLTTCFDLTGGLDQNIYAAAITP
Ga0318542_102831971	3300031668	Soil	DYITVAAQGNTIGAVWTDQRNTVGAADPSGDKDGADVAGDPETGGNCTSSFTTCFDGTGGLDQNIYSATITP
Ga0318560_105287421	3300031682	Soil	AQGDTIGAVWTDQRNTVGAADPKGDNDGADVAGDPETGGTCTSSLNTCFDGTGGLDQNIYAATITP
Ga0318560_105421621	3300031682	Soil	RNTVGAADPNADNDGADVAGDPETGGTCTSSLTTCFDLTGGLDQNIYAAAITP
Ga0318496_101782312	3300031713	Soil	YITVAAQGNTIGTVWTDQRNTVGAADPNGDNDGADIAGDPETGGTCTSSLTTCFDGTGGLDQNIYTALISP
Ga0307474_106631781	3300031718	Hardwood Forest Soil	NTVGAPDPSGDNDGADVAGDPETGGTCTSSLDTCFDGTGGLDQNIYAATITP
Ga0306918_114349961	3300031744	Soil	FFGDYITVAAQGNTIGAVWTDQRNTVGAADPSGDKDGADVAGDPETGGNCTSSFTTCFDGTGGLDQNIYSATITP
Ga0318554_107122901	3300031765	Soil	AAWTDQRNTVGAPDTGAGADNDHADVAGDPETGGTCTSSLNTCFDHTGGLDQNIYAATIT
Ga0310917_105989151	3300031833	Soil	QGNTIGAVWTNQRNTVGAADPSGDKDGADVAGDPETGGNCTSSFTTCFDGTGGLDQNIYSATITP
Ga0308174_106996902	3300031939	Soil	AVWTDQRDTVAADDPSGDNDGADVAGDPETGGTCTSSLTDCFDKAGGLDQNIYSAAITP
Ga0318556_106522671	3300032043	Soil	AWTDQRNTVGAADPNGDNDGADISGDPETGGTCTSSLTTCFDGTGGLDQNIYTATITP
Ga0308173_104144783	3300032074	Soil	GAVWTDQRDTVAADDPSGDNDGADVAGDPETGGTCTSSLTDCFDKTGGLDQNIYSAAITP
Ga0306920_1007660241	3300032261	Soil	GDYITVAAQGNTIGAVWTDQRNTAGAPDPNGDNDGADVAGDPETGGTCTSSLTTCFDLTGGLDQNIYAAAITP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087257

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences