NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087232

Metagenome / Metatranscriptome Family F087232

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087232
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 39 residues
Representative Sequence EMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Number of Associated Samples 83
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 20.37 %
% of genes near scaffold ends (potentially truncated) 79.09 %
% of genes from short scaffolds (< 2000 bps) 87.27 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.818 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(42.727 % of family members)
Environment Ontology (ENVO) Unclassified
(60.909 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(70.909 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.
12224066357
2BBAY92_101256383
3BBAY94_101407623
4JGI11772J19994_10208281
5Ga0055442_103671732
6Ga0074648_10963763
7Ga0074648_12241681
8Ga0074647_10024128
9Ga0074647_10056516
10Ga0074647_10056727
11Ga0074649_10257827
12Ga0074649_11342951
13Ga0075462_100920163
14Ga0075503_10502991
15Ga0075514_11084853
16Ga0075461_101479361
17Ga0075461_102234132
18Ga0075467_103232323
19Ga0070754_104391262
20Ga0075110_10536121
21Ga0075460_100976111
22Ga0075460_101060233
23Ga0075460_101602131
24Ga0075460_102185342
25Ga0075463_100082057
26Ga0075463_100183764
27Ga0075463_100618112
28Ga0075463_101734192
29Ga0070753_13703622
30Ga0102934_13673191
31Ga0099851_12798001
32Ga0099847_10896251
33Ga0099846_11290011
34Ga0102957_11806933
35Ga0102957_12876781
36Ga0102956_13668261
37Ga0115566_102124973
38Ga0115549_10387684
39Ga0118687_100831611
40Ga0114918_100472251
41Ga0114994_105770223
42Ga0115557_11847773
43Ga0115557_12356532
44Ga0115570_102164392
45Ga0129345_10988031
46Ga0129345_11074931
47Ga0129345_13277961
48Ga0129342_11988343
49Ga0129342_13092332
50Ga0136655_10802784
51Ga0129324_101702413
52Ga0136852_113069521
53Ga0129353_10919841
54Ga0129327_102923952
55Ga0182088_10235891
56Ga0180120_1000734410
57Ga0181590_101151035
58Ga0181585_107867383
59Ga0181585_108192532
60Ga0180432_104275823
61Ga0181592_101892934
62Ga0181592_108603872
63Ga0194002_10542251
64Ga0181599_11382904
65Ga0181598_12738911
66Ga0213858_102938863
67Ga0213868_106687481
68Ga0193947_10657821
69Ga0222717_100383591
70Ga0222718_101741973
71Ga0222718_101789611
72Ga0196895_10134601
73Ga0212021_10892741
74Ga0212027_10190203
75Ga0196899_11524043
76Ga0196905_10365044
77Ga0196901_10789781
78Ga0222653_10419513
79Ga0255772_105940641
80Ga0233398_11079003
81Ga0208303_10365534
82Ga0209094_10319674
83Ga0208149_10593931
84Ga0208428_10823632
85Ga0208428_11055372
86Ga0208898_10896612
87Ga0208150_11281661
88Ga0208899_12023363
89Ga0209137_11923281
90Ga0208767_10167031
91Ga0208767_11568221
92Ga0208427_10861391
93Ga0208427_10910043
94Ga0208543_10799912
95Ga0208785_10604183
96Ga0208785_11396632
97Ga0209832_10143901
98Ga0208917_10918481
99Ga0208645_11533361
100Ga0209630_101995421
101Ga0209932_10472451
102Ga0209929_10750033
103Ga0233414_101173691
104Ga0314858_027368_416_529
105Ga0314858_029661_1057_1170
106Ga0348335_078360_1014_1121
107Ga0348335_085235_785_898
108Ga0348335_098512_75_188
109Ga0348336_085764_29_178
110Ga0348336_112940_3_113
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
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Variant

5101520253035EMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAGSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
28.2%71.8%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Sediment
Marine
Deep Subsurface
Marine
Seawater
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Sea-Ice Brine
Marine
Salt Marsh
Natural And Restored Wetlands
Estuarine Water
Pelagic Marine
Pelagic Marine
Saline Lake
Saline Water
Pond Water
Saline Water And Sediment
Saline Water And Sediment
Saline Water And Sediment
Hypersaline Lake Sediment
Sediment
Mangrove Sediment
Pond Soil
Soil
Macroalgal Surface
42.7%8.2%8.2%6.4%3.6%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
22240663572222084006MarineMSVLGDEIKNVIRSIIGQQEEQVRTNPRDGEIHLYAG
BBAY92_1012563833300000947Macroalgal SurfaceELFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG*
BBAY94_1014076233300000949Macroalgal SurfaceGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG*
JGI11772J19994_102082813300001748Saline Water And SedimentGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0055442_1036717323300004029Natural And Restored WetlandsQITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG*
Ga0074648_109637633300005512Saline Water And SedimentITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG*
Ga0074648_122416813300005512Saline Water And SedimentAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG*
Ga0074647_100241283300005611Saline Water And SedimentTAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG*
Ga0074647_100565163300005611Saline Water And SedimentTAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0074647_100567273300005611Saline Water And SedimentTAEMSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG*
Ga0074649_102578273300005613Saline Water And SedimentPEMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG*
Ga0074649_113429513300005613Saline Water And SedimentITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPLDGEIHLYAG*
Ga0075462_1009201633300006027AqueousAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0075503_105029913300006400AqueousMSVLGDEIKQTIRSILRAQEAKVHTNPLDGEVHLYAG*
Ga0075514_110848533300006403AqueousMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG*
Ga0075461_1014793613300006637AqueousPEMSVIGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG*
Ga0075461_1022341323300006637AqueousIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0075467_1032323233300006803AqueousEMSVIGDEIKTVIRSIIRQQEEQVHSNPRDGEIHLYAG*
Ga0070754_1043912623300006810AqueousVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG*
Ga0075110_105361213300007074Saline LakeEMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG*
Ga0075460_1009761113300007234AqueousITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG*
Ga0075460_1010602333300007234AqueousMSVLGDEIKQVIRSIIRKQEEEVHINPLDGEIHLYAG*
Ga0075460_1016021313300007234AqueousMSVLGDEIKRVVRSIIREQEAEVLNNLKDGEIHLYAG*
Ga0075460_1021853423300007234AqueousMSVIGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG*
Ga0075463_1000820573300007236AqueousMSVLGDQIKTVIRSILKNQESPKRNPLDGEIHLFAG*
Ga0075463_1001837643300007236AqueousMSVLGDEIKTVIRSIIKKQEAEIHTNPRDGEIHLYAG*
Ga0075463_1006181123300007236AqueousLFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0075463_1017341923300007236AqueousMSVLGDEIKQVIRSIIRKQEAEVHTNPLDGEVHLYAG*
Ga0070753_137036223300007346AqueousLFLENKGQITAEMSVIGDEIKIVIRSIIRQQEEQVQTNPLDGEIHLYAG*
Ga0102934_136731913300007537Pond SoilTAEMSVLGDEIKQVIRSIIRKQEAEVHTNEKDYEVHLYAG*
Ga0099851_127980013300007538AqueousMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0099847_108962513300007540AqueousFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0099846_112900113300007542AqueousIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0102957_118069333300009027Pond WaterMSALGDEIKTVIRSIIKKQETEVHTNPRDGEIHLYAG*
Ga0102957_128767813300009027Pond WaterPEMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG*
Ga0102956_136682613300009033SoilSVLGDEIKQTIRSILRAQEAEVHTNPKDGEIHLYAG*
Ga0115566_1021249733300009071Pelagic MarineMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG*
Ga0115549_103876843300009074Pelagic MarineLFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG*
Ga0118687_1008316113300009124SedimentVLGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG*
Ga0114918_1004722513300009149Deep SubsurfaceMSVLGDEIKIVIRSIIRKQEEEVHTNPLDGEVHLYAG*
Ga0114994_1057702233300009420MarineMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG*
Ga0115557_118477733300009443Pelagic MarineSVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG*
Ga0115557_123565323300009443Pelagic MarineMSVLGDEIKVVIRSIIRQQEEEVHNNPRDGEIHLYAG*
Ga0115570_1021643923300009496Pelagic MarineMSVLGDEIKRVIRSIIREQEAQVRNNPKDGEIHLFAG*
Ga0129345_109880313300010297Freshwater To Marine Saline GradientITAEMSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG*
Ga0129345_110749313300010297Freshwater To Marine Saline GradientGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0129345_132779613300010297Freshwater To Marine Saline GradientMSVLGDEIKQVIRLIIRKQEAEVHTNPLDGEVHLYAG*
Ga0129342_119883433300010299Freshwater To Marine Saline GradientMSVLGDEIKQVIRSIIRKQEEEVHINPRDGEIHLYAG*
Ga0129342_130923323300010299Freshwater To Marine Saline GradientVIGDEIKTVIRSIIRQQEEQVQTNPLNGEIHLYAG*
Ga0136655_108027843300010316Freshwater To Marine Saline GradientLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0129324_1017024133300010368Freshwater To Marine Saline GradientMSVLGDEIKRVIRSIIREQEAKVQVNEKDYEVHLF
Ga0136852_1130695213300010412Mangrove SedimentITAEMSALGDEIKQVIRSIIREQENRVQTNPRDGEIHLYAG*
Ga0129353_109198413300012525AqueousWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0129327_1029239523300013010Freshwater To Marine Saline GradientSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0182088_102358913300016703Salt MarshQITPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0180120_10007344103300017697Freshwater To Marine Saline GradientEMSVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG
Ga0181590_1011510353300017967Salt MarshPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0181585_1078673833300017969Salt MarshEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHFYAG
Ga0181585_1081925323300017969Salt MarshSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG
Ga0180432_1042758233300017989Hypersaline Lake SedimentEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG
Ga0181592_1018929343300018421Salt MarshWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0181592_1086038723300018421Salt MarshSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG
Ga0194002_105422513300019745SedimentGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0181599_113829043300020178Salt MarshTAEMSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG
Ga0181598_127389113300020810Salt MarshEMSALGDEIKRVIRSIIREQETKVHTNDKDYEVHLYAG
Ga0213858_1029388633300021356SeawaterMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEIHLFAG
Ga0213868_1066874813300021389SeawaterPEMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0193947_106578213300021465SedimentSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0222717_1003835913300021957Estuarine WaterAEMSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG
Ga0222718_1017419733300021958Estuarine WaterMSVLGDEIKTVIRSIIKQQEEQVQTNPLDGEIHLYAG
Ga0222718_1017896113300021958Estuarine WaterVLGDEIKQTIRSILRAQEAEVHTNPKDGEIHLYAG
Ga0196895_101346013300022067AqueousTELFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG
Ga0212021_108927413300022068AqueousRSVLGDEIKQTIRSILRAQEAKVHTNPLDGEVHLYAG
Ga0212027_101902033300022168AqueousVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG
Ga0196899_115240433300022187AqueousEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG
Ga0196905_103650443300022198AqueousEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0196901_107897813300022200AqueousGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0222653_104195133300022857Saline WaterVLGDEIKIVIRLIIREQEIQANTNGRDYEEHLFAG
Ga0255772_1059406413300023176Salt MarshSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0233398_110790033300024320SeawaterPEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG
Ga0208303_103655343300025543AqueousAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0209094_103196743300025594Pelagic MarineMSVLGDEIKRVIRSIIAEQEAKVHNNPRDGEIHLYAG
Ga0208149_105939313300025610AqueousEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208428_108236323300025653AqueousELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208428_110553723300025653AqueousQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208898_108966123300025671AqueousKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208150_112816613300025751AqueousKGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0208899_120233633300025759AqueousTPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0209137_119232813300025767MarineMSVLGDEIKKVIRSIIREQEAKVHTNEKDYEVHLFAG
Ga0208767_101670313300025769AqueousVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG
Ga0208767_115682213300025769AqueousSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208427_108613913300025771AqueousRWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208427_109100433300025771AqueousITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0208543_107999123300025810AqueousRGQITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPLNGEIHLYAG
Ga0208785_106041833300025815AqueousITPEMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0208785_113966323300025815AqueousAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0209832_101439013300025830Pelagic MarinePEMSVLGDEIKRVIRSIIAEQEAKVHNNPRDGEIHLYAG
Ga0208917_109184813300025840AqueousEMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0208645_115333613300025853AqueousSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG
Ga0209630_1019954213300025892Pelagic MarineSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG
Ga0209932_104724513300026183Pond WaterAEMSVLGDEIKQVIRSIIRKQEAEVHTNEKDYEVHLYAG
Ga0209929_107500333300026187Pond WaterITPEMSVLGDEIKQTIRSILRAQEAEVRTNPRDGEIHLYAG
(restricted) Ga0233414_1011736913300028045SeawaterVIGDEIKIVIRSIIRQQEEEVHSNPRDGEIHLYAG
Ga0314858_027368_416_5293300033742Sea-Ice BrineMSVLGDEIKVVIRLIIREQEIQANKNSRDYEAHLFAG
Ga0314858_029661_1057_11703300033742Sea-Ice BrineMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG
Ga0348335_078360_1014_11213300034374AqueousVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0348335_085235_785_8983300034374AqueousMSVLGDEIKQVIRSIIRKQEAEVHTNPLDGEVHLYAG
Ga0348335_098512_75_1883300034374AqueousMSVLGDEIKTVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0348336_085764_29_1783300034375AqueousLFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0348336_112940_3_1133300034375AqueousSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG


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