Basic Information | |
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Family ID | F087232 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 110 |
Average Sequence Length | 39 residues |
Representative Sequence | EMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 20.37 % |
% of genes near scaffold ends (potentially truncated) | 79.09 % |
% of genes from short scaffolds (< 2000 bps) | 87.27 % |
Associated GOLD sequencing projects | 72 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (71.818 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (42.727 % of family members) |
Environment Ontology (ENVO) | Unclassified (60.909 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (70.909 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Sediment Marine Deep Subsurface Marine Seawater Aqueous Seawater Freshwater To Marine Saline Gradient Sea-Ice Brine Marine Salt Marsh Natural And Restored Wetlands Estuarine Water Pelagic Marine Pelagic Marine Saline Lake Saline Water Pond Water Saline Water And Sediment Saline Water And Sediment Saline Water And Sediment Hypersaline Lake Sediment Sediment Mangrove Sediment Pond Soil Soil Macroalgal Surface |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
2224066357 | 2222084006 | Marine | MSVLGDEIKNVIRSIIGQQEEQVRTNPRDGEIHLYAG |
BBAY92_101256383 | 3300000947 | Macroalgal Surface | ELFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG* |
BBAY94_101407623 | 3300000949 | Macroalgal Surface | GQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG* |
JGI11772J19994_10208281 | 3300001748 | Saline Water And Sediment | GQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG* |
Ga0055442_103671732 | 3300004029 | Natural And Restored Wetlands | QITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG* |
Ga0074648_10963763 | 3300005512 | Saline Water And Sediment | ITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG* |
Ga0074648_12241681 | 3300005512 | Saline Water And Sediment | AEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG* |
Ga0074647_10024128 | 3300005611 | Saline Water And Sediment | TAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG* |
Ga0074647_10056516 | 3300005611 | Saline Water And Sediment | TAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG* |
Ga0074647_10056727 | 3300005611 | Saline Water And Sediment | TAEMSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG* |
Ga0074649_10257827 | 3300005613 | Saline Water And Sediment | PEMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG* |
Ga0074649_11342951 | 3300005613 | Saline Water And Sediment | ITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPLDGEIHLYAG* |
Ga0075462_100920163 | 3300006027 | Aqueous | AIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG* |
Ga0075503_10502991 | 3300006400 | Aqueous | MSVLGDEIKQTIRSILRAQEAKVHTNPLDGEVHLYAG* |
Ga0075514_11084853 | 3300006403 | Aqueous | MSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG* |
Ga0075461_101479361 | 3300006637 | Aqueous | PEMSVIGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG* |
Ga0075461_102234132 | 3300006637 | Aqueous | IGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG* |
Ga0075467_103232323 | 3300006803 | Aqueous | EMSVIGDEIKTVIRSIIRQQEEQVHSNPRDGEIHLYAG* |
Ga0070754_104391262 | 3300006810 | Aqueous | VIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG* |
Ga0075110_10536121 | 3300007074 | Saline Lake | EMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG* |
Ga0075460_100976111 | 3300007234 | Aqueous | ITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG* |
Ga0075460_101060233 | 3300007234 | Aqueous | MSVLGDEIKQVIRSIIRKQEEEVHINPLDGEIHLYAG* |
Ga0075460_101602131 | 3300007234 | Aqueous | MSVLGDEIKRVVRSIIREQEAEVLNNLKDGEIHLYAG* |
Ga0075460_102185342 | 3300007234 | Aqueous | MSVIGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG* |
Ga0075463_100082057 | 3300007236 | Aqueous | MSVLGDQIKTVIRSILKNQESPKRNPLDGEIHLFAG* |
Ga0075463_100183764 | 3300007236 | Aqueous | MSVLGDEIKTVIRSIIKKQEAEIHTNPRDGEIHLYAG* |
Ga0075463_100618112 | 3300007236 | Aqueous | LFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG* |
Ga0075463_101734192 | 3300007236 | Aqueous | MSVLGDEIKQVIRSIIRKQEAEVHTNPLDGEVHLYAG* |
Ga0070753_13703622 | 3300007346 | Aqueous | LFLENKGQITAEMSVIGDEIKIVIRSIIRQQEEQVQTNPLDGEIHLYAG* |
Ga0102934_13673191 | 3300007537 | Pond Soil | TAEMSVLGDEIKQVIRSIIRKQEAEVHTNEKDYEVHLYAG* |
Ga0099851_12798001 | 3300007538 | Aqueous | MSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG |
Ga0099847_10896251 | 3300007540 | Aqueous | FLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG* |
Ga0099846_11290011 | 3300007542 | Aqueous | IGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG* |
Ga0102957_11806933 | 3300009027 | Pond Water | MSALGDEIKTVIRSIIKKQETEVHTNPRDGEIHLYAG* |
Ga0102957_12876781 | 3300009027 | Pond Water | PEMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG* |
Ga0102956_13668261 | 3300009033 | Soil | SVLGDEIKQTIRSILRAQEAEVHTNPKDGEIHLYAG* |
Ga0115566_102124973 | 3300009071 | Pelagic Marine | MSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG* |
Ga0115549_10387684 | 3300009074 | Pelagic Marine | LFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG* |
Ga0118687_100831611 | 3300009124 | Sediment | VLGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG* |
Ga0114918_100472251 | 3300009149 | Deep Subsurface | MSVLGDEIKIVIRSIIRKQEEEVHTNPLDGEVHLYAG* |
Ga0114994_105770223 | 3300009420 | Marine | MSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG* |
Ga0115557_11847773 | 3300009443 | Pelagic Marine | SVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG* |
Ga0115557_12356532 | 3300009443 | Pelagic Marine | MSVLGDEIKVVIRSIIRQQEEEVHNNPRDGEIHLYAG* |
Ga0115570_102164392 | 3300009496 | Pelagic Marine | MSVLGDEIKRVIRSIIREQEAQVRNNPKDGEIHLFAG* |
Ga0129345_10988031 | 3300010297 | Freshwater To Marine Saline Gradient | ITAEMSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG* |
Ga0129345_11074931 | 3300010297 | Freshwater To Marine Saline Gradient | GQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG* |
Ga0129345_13277961 | 3300010297 | Freshwater To Marine Saline Gradient | MSVLGDEIKQVIRLIIRKQEAEVHTNPLDGEVHLYAG* |
Ga0129342_11988343 | 3300010299 | Freshwater To Marine Saline Gradient | MSVLGDEIKQVIRSIIRKQEEEVHINPRDGEIHLYAG* |
Ga0129342_13092332 | 3300010299 | Freshwater To Marine Saline Gradient | VIGDEIKTVIRSIIRQQEEQVQTNPLNGEIHLYAG* |
Ga0136655_10802784 | 3300010316 | Freshwater To Marine Saline Gradient | LGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG* |
Ga0129324_101702413 | 3300010368 | Freshwater To Marine Saline Gradient | MSVLGDEIKRVIRSIIREQEAKVQVNEKDYEVHLF |
Ga0136852_113069521 | 3300010412 | Mangrove Sediment | ITAEMSALGDEIKQVIRSIIREQENRVQTNPRDGEIHLYAG* |
Ga0129353_10919841 | 3300012525 | Aqueous | WNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG* |
Ga0129327_102923952 | 3300013010 | Freshwater To Marine Saline Gradient | SVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG* |
Ga0182088_10235891 | 3300016703 | Salt Marsh | QITPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG |
Ga0180120_1000734410 | 3300017697 | Freshwater To Marine Saline Gradient | EMSVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG |
Ga0181590_101151035 | 3300017967 | Salt Marsh | PEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG |
Ga0181585_107867383 | 3300017969 | Salt Marsh | EMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHFYAG |
Ga0181585_108192532 | 3300017969 | Salt Marsh | SVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG |
Ga0180432_104275823 | 3300017989 | Hypersaline Lake Sediment | EMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG |
Ga0181592_101892934 | 3300018421 | Salt Marsh | WNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0181592_108603872 | 3300018421 | Salt Marsh | SVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG |
Ga0194002_10542251 | 3300019745 | Sediment | GQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0181599_11382904 | 3300020178 | Salt Marsh | TAEMSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG |
Ga0181598_12738911 | 3300020810 | Salt Marsh | EMSALGDEIKRVIRSIIREQETKVHTNDKDYEVHLYAG |
Ga0213858_102938863 | 3300021356 | Seawater | MSVLGDEIKRVIRSIIREQEAQVHNNPRDGEIHLFAG |
Ga0213868_106687481 | 3300021389 | Seawater | PEMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0193947_10657821 | 3300021465 | Sediment | SVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0222717_100383591 | 3300021957 | Estuarine Water | AEMSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG |
Ga0222718_101741973 | 3300021958 | Estuarine Water | MSVLGDEIKTVIRSIIKQQEEQVQTNPLDGEIHLYAG |
Ga0222718_101789611 | 3300021958 | Estuarine Water | VLGDEIKQTIRSILRAQEAEVHTNPKDGEIHLYAG |
Ga0196895_10134601 | 3300022067 | Aqueous | TELFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG |
Ga0212021_10892741 | 3300022068 | Aqueous | RSVLGDEIKQTIRSILRAQEAKVHTNPLDGEVHLYAG |
Ga0212027_10190203 | 3300022168 | Aqueous | VLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG |
Ga0196899_11524043 | 3300022187 | Aqueous | EMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG |
Ga0196905_10365044 | 3300022198 | Aqueous | EMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0196901_10789781 | 3300022200 | Aqueous | GQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0222653_10419513 | 3300022857 | Saline Water | VLGDEIKIVIRLIIREQEIQANTNGRDYEEHLFAG |
Ga0255772_105940641 | 3300023176 | Salt Marsh | SVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG |
Ga0233398_11079003 | 3300024320 | Seawater | PEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG |
Ga0208303_10365534 | 3300025543 | Aqueous | AEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0209094_10319674 | 3300025594 | Pelagic Marine | MSVLGDEIKRVIRSIIAEQEAKVHNNPRDGEIHLYAG |
Ga0208149_10593931 | 3300025610 | Aqueous | EMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0208428_10823632 | 3300025653 | Aqueous | ELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0208428_11055372 | 3300025653 | Aqueous | QITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0208898_10896612 | 3300025671 | Aqueous | KGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0208150_11281661 | 3300025751 | Aqueous | KGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0208899_12023363 | 3300025759 | Aqueous | TPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG |
Ga0209137_11923281 | 3300025767 | Marine | MSVLGDEIKKVIRSIIREQEAKVHTNEKDYEVHLFAG |
Ga0208767_10167031 | 3300025769 | Aqueous | VIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG |
Ga0208767_11568221 | 3300025769 | Aqueous | SAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0208427_10861391 | 3300025771 | Aqueous | RWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0208427_10910043 | 3300025771 | Aqueous | ITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0208543_10799912 | 3300025810 | Aqueous | RGQITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPLNGEIHLYAG |
Ga0208785_10604183 | 3300025815 | Aqueous | ITPEMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG |
Ga0208785_11396632 | 3300025815 | Aqueous | AIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0209832_10143901 | 3300025830 | Pelagic Marine | PEMSVLGDEIKRVIRSIIAEQEAKVHNNPRDGEIHLYAG |
Ga0208917_10918481 | 3300025840 | Aqueous | EMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG |
Ga0208645_11533361 | 3300025853 | Aqueous | SVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG |
Ga0209630_101995421 | 3300025892 | Pelagic Marine | SVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG |
Ga0209932_10472451 | 3300026183 | Pond Water | AEMSVLGDEIKQVIRSIIRKQEAEVHTNEKDYEVHLYAG |
Ga0209929_10750033 | 3300026187 | Pond Water | ITPEMSVLGDEIKQTIRSILRAQEAEVRTNPRDGEIHLYAG |
(restricted) Ga0233414_101173691 | 3300028045 | Seawater | VIGDEIKIVIRSIIRQQEEEVHSNPRDGEIHLYAG |
Ga0314858_027368_416_529 | 3300033742 | Sea-Ice Brine | MSVLGDEIKVVIRLIIREQEIQANKNSRDYEAHLFAG |
Ga0314858_029661_1057_1170 | 3300033742 | Sea-Ice Brine | MSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG |
Ga0348335_078360_1014_1121 | 3300034374 | Aqueous | VLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG |
Ga0348335_085235_785_898 | 3300034374 | Aqueous | MSVLGDEIKQVIRSIIRKQEAEVHTNPLDGEVHLYAG |
Ga0348335_098512_75_188 | 3300034374 | Aqueous | MSVLGDEIKTVIRSIIRQQEEQVRTNPRDGEIHLYAG |
Ga0348336_085764_29_178 | 3300034375 | Aqueous | LFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG |
Ga0348336_112940_3_113 | 3300034375 | Aqueous | SVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG |
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