NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087232

Metagenome / Metatranscriptome Family F087232

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087232
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 39 residues
Representative Sequence EMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Number of Associated Samples 83
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 20.37 %
% of genes near scaffold ends (potentially truncated) 79.09 %
% of genes from short scaffolds (< 2000 bps) 87.27 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.818 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(42.727 % of family members)
Environment Ontology (ENVO) Unclassified
(60.909 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(70.909 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A71.82 %
All OrganismsrootAll Organisms28.18 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2222084006|2223610938Not Available530Open in IMG/M
3300000947|BBAY92_10125638Not Available678Open in IMG/M
3300000949|BBAY94_10140762Not Available656Open in IMG/M
3300001748|JGI11772J19994_1020828Not Available953Open in IMG/M
3300004029|Ga0055442_10367173Not Available503Open in IMG/M
3300005512|Ga0074648_1096376All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1054Open in IMG/M
3300005512|Ga0074648_1224168Not Available510Open in IMG/M
3300005611|Ga0074647_1002412All Organisms → cellular organisms → Bacteria → Proteobacteria6126Open in IMG/M
3300005611|Ga0074647_1005651All Organisms → Viruses → Predicted Viral2897Open in IMG/M
3300005611|Ga0074647_1005672All Organisms → Viruses → Predicted Viral2891Open in IMG/M
3300005613|Ga0074649_1025782All Organisms → Viruses → Predicted Viral3124Open in IMG/M
3300005613|Ga0074649_1134295Not Available828Open in IMG/M
3300006027|Ga0075462_10092016Not Available945Open in IMG/M
3300006400|Ga0075503_1050299Not Available523Open in IMG/M
3300006403|Ga0075514_1108485Not Available588Open in IMG/M
3300006637|Ga0075461_10147936Not Available720Open in IMG/M
3300006637|Ga0075461_10223413All Organisms → Viruses → environmental samples → uncultured Mediterranean phage558Open in IMG/M
3300006803|Ga0075467_10323232Not Available816Open in IMG/M
3300006810|Ga0070754_10439126Not Available567Open in IMG/M
3300007074|Ga0075110_1053612All Organisms → cellular organisms → Bacteria943Open in IMG/M
3300007234|Ga0075460_10097611Not Available1058Open in IMG/M
3300007234|Ga0075460_10106023Not Available1006Open in IMG/M
3300007234|Ga0075460_10160213Not Available781Open in IMG/M
3300007234|Ga0075460_10218534Not Available643Open in IMG/M
3300007236|Ga0075463_10008205All Organisms → Viruses → Predicted Viral3515Open in IMG/M
3300007236|Ga0075463_10018376Not Available2297Open in IMG/M
3300007236|Ga0075463_10061811All Organisms → Viruses → Predicted Viral1209Open in IMG/M
3300007236|Ga0075463_10173419Not Available695Open in IMG/M
3300007346|Ga0070753_1370362Not Available502Open in IMG/M
3300007537|Ga0102934_1367319Not Available634Open in IMG/M
3300007538|Ga0099851_1279800Not Available592Open in IMG/M
3300007540|Ga0099847_1089625All Organisms → Viruses → environmental samples → uncultured Mediterranean phage942Open in IMG/M
3300007542|Ga0099846_1129001Not Available919Open in IMG/M
3300009027|Ga0102957_1180693Not Available753Open in IMG/M
3300009027|Ga0102957_1287678All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium600Open in IMG/M
3300009033|Ga0102956_1366826All Organisms → cellular organisms → Bacteria → Proteobacteria508Open in IMG/M
3300009071|Ga0115566_10212497Not Available1175Open in IMG/M
3300009074|Ga0115549_1038768Not Available1756Open in IMG/M
3300009124|Ga0118687_10083161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1094Open in IMG/M
3300009149|Ga0114918_10047225All Organisms → cellular organisms → Bacteria2916Open in IMG/M
3300009420|Ga0114994_10577022Not Available738Open in IMG/M
3300009443|Ga0115557_1184777Not Available825Open in IMG/M
3300009443|Ga0115557_1235653Not Available705Open in IMG/M
3300009496|Ga0115570_10216439Not Available859Open in IMG/M
3300010297|Ga0129345_1098803Not Available1082Open in IMG/M
3300010297|Ga0129345_1107493All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1030Open in IMG/M
3300010297|Ga0129345_1327796Not Available528Open in IMG/M
3300010299|Ga0129342_1198834Not Available713Open in IMG/M
3300010299|Ga0129342_1309233Not Available542Open in IMG/M
3300010316|Ga0136655_1080278Not Available995Open in IMG/M
3300010368|Ga0129324_10170241Not Available898Open in IMG/M
3300010412|Ga0136852_11306952Not Available688Open in IMG/M
3300012525|Ga0129353_1091984Not Available1597Open in IMG/M
3300013010|Ga0129327_10292395All Organisms → Viruses → environmental samples → uncultured Mediterranean phage841Open in IMG/M
3300016703|Ga0182088_1023589Not Available692Open in IMG/M
3300017697|Ga0180120_10007344Not Available5360Open in IMG/M
3300017967|Ga0181590_10115103Not Available2087Open in IMG/M
3300017969|Ga0181585_10786738Not Available617Open in IMG/M
3300017969|Ga0181585_10819253Not Available602Open in IMG/M
3300017989|Ga0180432_10427582Not Available977Open in IMG/M
3300018421|Ga0181592_10189293Not Available1546Open in IMG/M
3300018421|Ga0181592_10860387All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium593Open in IMG/M
3300019745|Ga0194002_1054225Not Available634Open in IMG/M
3300020178|Ga0181599_1138290Not Available1045Open in IMG/M
3300020810|Ga0181598_1273891Not Available611Open in IMG/M
3300021356|Ga0213858_10293886All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium776Open in IMG/M
3300021389|Ga0213868_10668748Not Available534Open in IMG/M
3300021465|Ga0193947_1065782Not Available570Open in IMG/M
3300021957|Ga0222717_10038359All Organisms → Viruses → Predicted Viral3143Open in IMG/M
3300021958|Ga0222718_10174197All Organisms → Viruses1194Open in IMG/M
3300021958|Ga0222718_10178961All Organisms → Viruses → Predicted Viral1173Open in IMG/M
3300022067|Ga0196895_1013460Not Available889Open in IMG/M
3300022068|Ga0212021_1089274Not Available633Open in IMG/M
3300022168|Ga0212027_1019020Not Available938Open in IMG/M
3300022187|Ga0196899_1152404Not Available641Open in IMG/M
3300022198|Ga0196905_1036504All Organisms → Viruses → Predicted Viral1451Open in IMG/M
3300022200|Ga0196901_1078978All Organisms → Viruses → environmental samples → uncultured Mediterranean phage1176Open in IMG/M
3300023176|Ga0255772_10594064Not Available512Open in IMG/M
3300024320|Ga0233398_1107900All Organisms → Viruses648Open in IMG/M
3300025543|Ga0208303_1036553Not Available1270Open in IMG/M
3300025594|Ga0209094_1031967All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1515Open in IMG/M
3300025610|Ga0208149_1059393Not Available973Open in IMG/M
3300025653|Ga0208428_1082363All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp.927Open in IMG/M
3300025653|Ga0208428_1105537Not Available790Open in IMG/M
3300025671|Ga0208898_1089661All Organisms → Viruses → environmental samples → uncultured Mediterranean phage964Open in IMG/M
3300025751|Ga0208150_1128166Not Available815Open in IMG/M
3300025759|Ga0208899_1202336Not Available630Open in IMG/M
3300025767|Ga0209137_1192328Not Available696Open in IMG/M
3300025769|Ga0208767_1016703All Organisms → Viruses4241Open in IMG/M
3300025769|Ga0208767_1156822Not Available820Open in IMG/M
3300025771|Ga0208427_1086139Not Available1104Open in IMG/M
3300025771|Ga0208427_1091004Not Available1066Open in IMG/M
3300025810|Ga0208543_1079991Not Available788Open in IMG/M
3300025815|Ga0208785_1060418Not Available1029Open in IMG/M
3300025815|Ga0208785_1139663All Organisms → Viruses → environmental samples → uncultured Mediterranean phage563Open in IMG/M
3300025830|Ga0209832_1014390All Organisms → Viruses3430Open in IMG/M
3300025840|Ga0208917_1091848Not Available1123Open in IMG/M
3300025853|Ga0208645_1153336Not Available873Open in IMG/M
3300025892|Ga0209630_10199542Not Available974Open in IMG/M
3300026183|Ga0209932_1047245Not Available1045Open in IMG/M
3300026187|Ga0209929_1075003Not Available914Open in IMG/M
(restricted) 3300028045|Ga0233414_10117369Not Available1158Open in IMG/M
3300033742|Ga0314858_029661Not Available1255Open in IMG/M
3300034374|Ga0348335_078360All Organisms → Viruses → unclassified viruses1123Open in IMG/M
3300034374|Ga0348335_085235Not Available1049Open in IMG/M
3300034374|Ga0348335_098512Not Available927Open in IMG/M
3300034375|Ga0348336_085764Not Available1120Open in IMG/M
3300034375|Ga0348336_112940Not Available888Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous42.73%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient8.18%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh8.18%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.36%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water3.64%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.73%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.73%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water And Sediment2.73%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment2.73%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment1.82%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.82%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment1.82%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface1.82%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.91%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.91%
MarineEnvironmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine0.91%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.91%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.91%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.91%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.91%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.91%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.91%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment0.91%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment0.91%
Mangrove SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment0.91%
Pond SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.91%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2222084006Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - oil_dispersant_7EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300000949Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94Host-AssociatedOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300004029Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2EnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005611Saline surface water microbial communities from Etoliko Lagoon, GreeceEnvironmentalOpen in IMG/M
3300005613Saline sediment microbial communities from Etoliko Lagoon, Greece - sedimentEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006400Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006403Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300007074Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8EnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007236Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007537Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_A_D1_MGEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009033Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D2_MGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300009149Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaGEnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009496Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524EnvironmentalOpen in IMG/M
3300010297Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNAEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010412Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10EnvironmentalOpen in IMG/M
3300012525Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300016703Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041407CT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017969Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017989Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_2 metaGEnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019745Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLT_8-9_MGEnvironmentalOpen in IMG/M
3300020178Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041405US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020810Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021465Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_0-1_MGEnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022857Saline water microbial communities from Ace Lake, Antarctica - #419EnvironmentalOpen in IMG/M
3300023176Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaGEnvironmentalOpen in IMG/M
3300024320Seawater microbial communities from Monterey Bay, California, United States - 38DEnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025594Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025767Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025815Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025830Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407 (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026183Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
22240663572222084006MarineMSVLGDEIKNVIRSIIGQQEEQVRTNPRDGEIHLYAG
BBAY92_1012563833300000947Macroalgal SurfaceELFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG*
BBAY94_1014076233300000949Macroalgal SurfaceGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG*
JGI11772J19994_102082813300001748Saline Water And SedimentGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0055442_1036717323300004029Natural And Restored WetlandsQITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG*
Ga0074648_109637633300005512Saline Water And SedimentITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG*
Ga0074648_122416813300005512Saline Water And SedimentAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG*
Ga0074647_100241283300005611Saline Water And SedimentTAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG*
Ga0074647_100565163300005611Saline Water And SedimentTAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0074647_100567273300005611Saline Water And SedimentTAEMSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG*
Ga0074649_102578273300005613Saline Water And SedimentPEMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG*
Ga0074649_113429513300005613Saline Water And SedimentITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPLDGEIHLYAG*
Ga0075462_1009201633300006027AqueousAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0075503_105029913300006400AqueousMSVLGDEIKQTIRSILRAQEAKVHTNPLDGEVHLYAG*
Ga0075514_110848533300006403AqueousMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG*
Ga0075461_1014793613300006637AqueousPEMSVIGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG*
Ga0075461_1022341323300006637AqueousIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0075467_1032323233300006803AqueousEMSVIGDEIKTVIRSIIRQQEEQVHSNPRDGEIHLYAG*
Ga0070754_1043912623300006810AqueousVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG*
Ga0075110_105361213300007074Saline LakeEMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG*
Ga0075460_1009761113300007234AqueousITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG*
Ga0075460_1010602333300007234AqueousMSVLGDEIKQVIRSIIRKQEEEVHINPLDGEIHLYAG*
Ga0075460_1016021313300007234AqueousMSVLGDEIKRVVRSIIREQEAEVLNNLKDGEIHLYAG*
Ga0075460_1021853423300007234AqueousMSVIGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG*
Ga0075463_1000820573300007236AqueousMSVLGDQIKTVIRSILKNQESPKRNPLDGEIHLFAG*
Ga0075463_1001837643300007236AqueousMSVLGDEIKTVIRSIIKKQEAEIHTNPRDGEIHLYAG*
Ga0075463_1006181123300007236AqueousLFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0075463_1017341923300007236AqueousMSVLGDEIKQVIRSIIRKQEAEVHTNPLDGEVHLYAG*
Ga0070753_137036223300007346AqueousLFLENKGQITAEMSVIGDEIKIVIRSIIRQQEEQVQTNPLDGEIHLYAG*
Ga0102934_136731913300007537Pond SoilTAEMSVLGDEIKQVIRSIIRKQEAEVHTNEKDYEVHLYAG*
Ga0099851_127980013300007538AqueousMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0099847_108962513300007540AqueousFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0099846_112900113300007542AqueousIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0102957_118069333300009027Pond WaterMSALGDEIKTVIRSIIKKQETEVHTNPRDGEIHLYAG*
Ga0102957_128767813300009027Pond WaterPEMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG*
Ga0102956_136682613300009033SoilSVLGDEIKQTIRSILRAQEAEVHTNPKDGEIHLYAG*
Ga0115566_1021249733300009071Pelagic MarineMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG*
Ga0115549_103876843300009074Pelagic MarineLFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG*
Ga0118687_1008316113300009124SedimentVLGDEIKIVIRSIIKKQEEQVHSNPKDGEIHLYAG*
Ga0114918_1004722513300009149Deep SubsurfaceMSVLGDEIKIVIRSIIRKQEEEVHTNPLDGEVHLYAG*
Ga0114994_1057702233300009420MarineMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG*
Ga0115557_118477733300009443Pelagic MarineSVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG*
Ga0115557_123565323300009443Pelagic MarineMSVLGDEIKVVIRSIIRQQEEEVHNNPRDGEIHLYAG*
Ga0115570_1021643923300009496Pelagic MarineMSVLGDEIKRVIRSIIREQEAQVRNNPKDGEIHLFAG*
Ga0129345_109880313300010297Freshwater To Marine Saline GradientITAEMSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG*
Ga0129345_110749313300010297Freshwater To Marine Saline GradientGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0129345_132779613300010297Freshwater To Marine Saline GradientMSVLGDEIKQVIRLIIRKQEAEVHTNPLDGEVHLYAG*
Ga0129342_119883433300010299Freshwater To Marine Saline GradientMSVLGDEIKQVIRSIIRKQEEEVHINPRDGEIHLYAG*
Ga0129342_130923323300010299Freshwater To Marine Saline GradientVIGDEIKTVIRSIIRQQEEQVQTNPLNGEIHLYAG*
Ga0136655_108027843300010316Freshwater To Marine Saline GradientLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0129324_1017024133300010368Freshwater To Marine Saline GradientMSVLGDEIKRVIRSIIREQEAKVQVNEKDYEVHLF
Ga0136852_1130695213300010412Mangrove SedimentITAEMSALGDEIKQVIRSIIREQENRVQTNPRDGEIHLYAG*
Ga0129353_109198413300012525AqueousWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG*
Ga0129327_1029239523300013010Freshwater To Marine Saline GradientSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG*
Ga0182088_102358913300016703Salt MarshQITPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0180120_10007344103300017697Freshwater To Marine Saline GradientEMSVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG
Ga0181590_1011510353300017967Salt MarshPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0181585_1078673833300017969Salt MarshEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHFYAG
Ga0181585_1081925323300017969Salt MarshSVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG
Ga0180432_1042758233300017989Hypersaline Lake SedimentEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEVHLYAG
Ga0181592_1018929343300018421Salt MarshWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0181592_1086038723300018421Salt MarshSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG
Ga0194002_105422513300019745SedimentGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0181599_113829043300020178Salt MarshTAEMSVLGDEIKQTIRSILREQEAKVHTNENDYEVHLYAG
Ga0181598_127389113300020810Salt MarshEMSALGDEIKRVIRSIIREQETKVHTNDKDYEVHLYAG
Ga0213858_1029388633300021356SeawaterMSVLGDEIKRVIRSIIREQEAQVHNNPRDGEIHLFAG
Ga0213868_1066874813300021389SeawaterPEMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0193947_106578213300021465SedimentSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0222717_1003835913300021957Estuarine WaterAEMSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG
Ga0222718_1017419733300021958Estuarine WaterMSVLGDEIKTVIRSIIKQQEEQVQTNPLDGEIHLYAG
Ga0222718_1017896113300021958Estuarine WaterVLGDEIKQTIRSILRAQEAEVHTNPKDGEIHLYAG
Ga0196895_101346013300022067AqueousTELFLENKGQITPEMSVIGDEIKIVIRSIIRQQEEQVQSNPKDGEIHLYAG
Ga0212021_108927413300022068AqueousRSVLGDEIKQTIRSILRAQEAKVHTNPLDGEVHLYAG
Ga0212027_101902033300022168AqueousVLGDEIKVVIRSIIRRQEEEVHSNSRDGEIHLYAG
Ga0196899_115240433300022187AqueousEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG
Ga0196905_103650443300022198AqueousEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0196901_107897813300022200AqueousGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0222653_104195133300022857Saline WaterVLGDEIKIVIRLIIREQEIQANTNGRDYEEHLFAG
Ga0255772_1059406413300023176Salt MarshSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0233398_110790033300024320SeawaterPEMSVLGDEIKNVIRSIIRQQEEQVHSNPRDGEIHLYAG
Ga0208303_103655343300025543AqueousAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0209094_103196743300025594Pelagic MarineMSVLGDEIKRVIRSIIAEQEAKVHNNPRDGEIHLYAG
Ga0208149_105939313300025610AqueousEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208428_108236323300025653AqueousELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208428_110553723300025653AqueousQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208898_108966123300025671AqueousKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208150_112816613300025751AqueousKGQITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0208899_120233633300025759AqueousTPEMSVLGDEIKTVIRSIIKQQEEQVRTNPLDGEIHLYAG
Ga0209137_119232813300025767MarineMSVLGDEIKKVIRSIIREQEAKVHTNEKDYEVHLFAG
Ga0208767_101670313300025769AqueousVIGDEIKTVIRSIIRQQEEQVRTNPKDGEIHLYAG
Ga0208767_115682213300025769AqueousSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208427_108613913300025771AqueousRWNELFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0208427_109100433300025771AqueousITAEMSVIGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0208543_107999123300025810AqueousRGQITAEMSVIGDEIKTVIRSIIRQQEEQVQTNPLNGEIHLYAG
Ga0208785_106041833300025815AqueousITPEMSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0208785_113966323300025815AqueousAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0209832_101439013300025830Pelagic MarinePEMSVLGDEIKRVIRSIIAEQEAKVHNNPRDGEIHLYAG
Ga0208917_109184813300025840AqueousEMSVLGDEIKTVIRSIIRQQEEQVRTNPLDGEIHLYAG
Ga0208645_115333613300025853AqueousSVIGDEIKTVIRSIIRQQEEQVQTNPRDGEIHLYAG
Ga0209630_1019954213300025892Pelagic MarineSVLGDEIKRVIRSIIREQEAQVHNNPRDGEVHLFAG
Ga0209932_104724513300026183Pond WaterAEMSVLGDEIKQVIRSIIRKQEAEVHTNEKDYEVHLYAG
Ga0209929_107500333300026187Pond WaterITPEMSVLGDEIKQTIRSILRAQEAEVRTNPRDGEIHLYAG
(restricted) Ga0233414_1011736913300028045SeawaterVIGDEIKIVIRSIIRQQEEEVHSNPRDGEIHLYAG
Ga0314858_027368_416_5293300033742Sea-Ice BrineMSVLGDEIKVVIRLIIREQEIQANKNSRDYEAHLFAG
Ga0314858_029661_1057_11703300033742Sea-Ice BrineMSVLGDEIKRVVRSIIREQEEEVLSNLKNGEVHLFAG
Ga0348335_078360_1014_11213300034374AqueousVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0348335_085235_785_8983300034374AqueousMSVLGDEIKQVIRSIIRKQEAEVHTNPLDGEVHLYAG
Ga0348335_098512_75_1883300034374AqueousMSVLGDEIKTVIRSIIRQQEEQVRTNPRDGEIHLYAG
Ga0348336_085764_29_1783300034375AqueousLFLENKGQITAEMSAIGDEIKHTIRSILKAQETQVHTNPLDGEIHLYAG
Ga0348336_112940_3_1133300034375AqueousSVLGDEIKNVIRSIIRQQEEQVRTNPRDGEIHLYAG


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