Metagenome / Metatranscriptome Family F087214

Basic Information
Family ID	F087214
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	51 residues
Representative Sequence	MKAFRKLLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLLKQRTVRDY
Number of Associated Samples	97
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	43.93 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	88.18 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Most Common Taxonomy
Group	Bacteria (77.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (9.091 % of family members)
Environment Ontology (ENVO)	Unclassified (29.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.273 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.15% β-sheet: 0.00% Coil/Unstructured: 53.85%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02567	PhzC-PhzF	48.18
PF01642	MM_CoA_mutase	11.82
PF01588	tRNA_bind	2.73
PF00535	Glycos_transf_2	2.73
PF00113	Enolase_C	1.82
PF13649	Methyltransf_25	0.91
PF00180	Iso_dh	0.91
PF00005	ABC_tran	0.91
PF02779	Transket_pyr	0.91
PF00691	OmpA	0.91
PF07687	M20_dimer	0.91
PF02954	HTH_8	0.91
PF03773	ArsP_1	0.91
PF00271	Helicase_C	0.91
PF07519	Tannase	0.91
PF01346	FKBP_N	0.91
PF02880	PGM_PMM_III	0.91
PF09685	DUF4870	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	48.18
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	11.82
COG0073	tRNA-binding EMAP/Myf domain	Translation, ribosomal structure and biogenesis [J]	2.73
COG2517	Predicted RNA-binding protein, contains C-terminal EMAP domain	General function prediction only [R]	2.73
COG0148	Enolase	Carbohydrate transport and metabolism [G]	1.82
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.91
COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0701	Uncharacterized membrane protein YraQ, UPF0718 family	Function unknown [S]	0.91
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.27 %
Unclassified	root	N/A	22.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.27 %
Unclassified	root	N/A	22.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.27 %
Unclassified	root	N/A	22.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.36 %
Unclassified	root	N/A	22.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.64 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.91 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.82 %
Desulfosudaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Desulfosudis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis	0.91 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.82 %
Desulfosudis oleivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis → Desulfosudis oleivorans	0.91 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0698216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3818	Open in IMG/M
3300002245\|JGIcombinedJ26739_101342709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300004479\|Ga0062595_100287320	All Organisms → cellular organisms → Bacteria → Acidobacteria	1098	Open in IMG/M
3300004479\|Ga0062595_101541006	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005337\|Ga0070682_100516264	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005338\|Ga0068868_101952355	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005437\|Ga0070710_10589872	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300005458\|Ga0070681_10159093	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2183	Open in IMG/M
3300005458\|Ga0070681_10429867	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300005458\|Ga0070681_11864329	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300005526\|Ga0073909_10277493	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005547\|Ga0070693_100198523	All Organisms → cellular organisms → Bacteria → Acidobacteria	1301	Open in IMG/M
3300005575\|Ga0066702_10276862	All Organisms → cellular organisms → Bacteria → Acidobacteria	1024	Open in IMG/M
3300005575\|Ga0066702_10566479	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300005587\|Ga0066654_10667698	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005614\|Ga0068856_102106849	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005616\|Ga0068852_101888491	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300006028\|Ga0070717_10120119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2251	Open in IMG/M
3300006426\|Ga0075037_1869092	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300009038\|Ga0099829_11375256	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300009093\|Ga0105240_11491676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300009098\|Ga0105245_10002574	All Organisms → cellular organisms → Bacteria	16328	Open in IMG/M
3300009519\|Ga0116108_1235900	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300009551\|Ga0105238_10711435	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017	Open in IMG/M
3300009660\|Ga0105854_1108125	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300010048\|Ga0126373_10932059	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	933	Open in IMG/M
3300010359\|Ga0126376_10342726	All Organisms → cellular organisms → Bacteria → Acidobacteria	1321	Open in IMG/M
3300010360\|Ga0126372_12125321	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300010373\|Ga0134128_11059384	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300010375\|Ga0105239_11468699	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300010375\|Ga0105239_12487745	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300010376\|Ga0126381_101301225	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300010396\|Ga0134126_12363139	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300010398\|Ga0126383_10911457	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300010398\|Ga0126383_12110343	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300011271\|Ga0137393_10633894	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300012210\|Ga0137378_11442212	Not Available	601	Open in IMG/M
3300012923\|Ga0137359_11127744	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300012958\|Ga0164299_11352246	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300012986\|Ga0164304_10463584	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300014496\|Ga0182011_10348551	Not Available	974	Open in IMG/M
3300014654\|Ga0181525_10411022	Not Available	744	Open in IMG/M
3300014657\|Ga0181522_10240389	Not Available	1069	Open in IMG/M
3300015245\|Ga0137409_10337134	All Organisms → cellular organisms → Bacteria → Acidobacteria	1318	Open in IMG/M
3300015245\|Ga0137409_10848090	Not Available	749	Open in IMG/M
3300015372\|Ga0132256_103442200	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300016294\|Ga0182041_11660073	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300016730\|Ga0181515_1476242	Not Available	1042	Open in IMG/M
3300017934\|Ga0187803_10249501	Not Available	703	Open in IMG/M
3300017939\|Ga0187775_10068140	Not Available	1129	Open in IMG/M
3300017940\|Ga0187853_10333457	Not Available	680	Open in IMG/M
3300017941\|Ga0187850_10281613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	741	Open in IMG/M
3300017943\|Ga0187819_10384962	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300017948\|Ga0187847_10912086	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300017974\|Ga0187777_11218370	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300018014\|Ga0187860_1160345	Not Available	955	Open in IMG/M
3300018022\|Ga0187864_10348064	Not Available	649	Open in IMG/M
3300018034\|Ga0187863_10064466	Not Available	2076	Open in IMG/M
3300018046\|Ga0187851_10058879	Not Available	2480	Open in IMG/M
3300018046\|Ga0187851_10569684	Not Available	641	Open in IMG/M
3300018047\|Ga0187859_10907888	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300018060\|Ga0187765_10866291	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300018086\|Ga0187769_10671893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfosudaceae → Desulfosudis → Desulfosudis oleivorans	783	Open in IMG/M
3300018433\|Ga0066667_11751832	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300020199\|Ga0179592_10066791	Not Available	1644	Open in IMG/M
3300020581\|Ga0210399_10170798	All Organisms → cellular organisms → Bacteria → Acidobacteria	1803	Open in IMG/M
3300020610\|Ga0154015_1199963	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300020610\|Ga0154015_1581728	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300021403\|Ga0210397_10650136	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300021420\|Ga0210394_10949888	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300021560\|Ga0126371_11439239	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300022504\|Ga0242642_1068520	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300024347\|Ga0179591_1021386	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2920	Open in IMG/M
3300025913\|Ga0207695_10530455	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300025913\|Ga0207695_11507114	Not Available	553	Open in IMG/M
3300025928\|Ga0207700_11569991	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300025928\|Ga0207700_11841231	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300025939\|Ga0207665_11209968	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300025949\|Ga0207667_10363573	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300026023\|Ga0207677_10891258	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300026142\|Ga0207698_11531063	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300026309\|Ga0209055_1304244	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300026557\|Ga0179587_10113062	Not Available	1657	Open in IMG/M
3300027678\|Ga0209011_1222029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300027765\|Ga0209073_10466236	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300027821\|Ga0209811_10020000	All Organisms → cellular organisms → Bacteria	2187	Open in IMG/M
3300027821\|Ga0209811_10301318	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300028381\|Ga0268264_12646532	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300028765\|Ga0302198_10358855	Not Available	673	Open in IMG/M
3300029889\|Ga0246001_1077145	Not Available	635	Open in IMG/M
3300029943\|Ga0311340_11345253	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300029956\|Ga0302150_10079154	Not Available	1271	Open in IMG/M
3300029995\|Ga0302210_10210694	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300030047\|Ga0302286_10055281	All Organisms → cellular organisms → Bacteria → Acidobacteria	2107	Open in IMG/M
3300031716\|Ga0310813_10823757	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300031718\|Ga0307474_11284538	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300031823\|Ga0307478_10265134	All Organisms → cellular organisms → Bacteria → Acidobacteria	1399	Open in IMG/M
3300032074\|Ga0308173_10859323	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300032074\|Ga0308173_11410631	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300032160\|Ga0311301_10997209	Not Available	1108	Open in IMG/M
3300032180\|Ga0307471_103867086	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300032261\|Ga0306920_101171404	All Organisms → cellular organisms → Bacteria → Acidobacteria	1112	Open in IMG/M
3300032782\|Ga0335082_11024410	Not Available	690	Open in IMG/M
3300032895\|Ga0335074_10024084	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8589	Open in IMG/M
3300032898\|Ga0335072_10348890	All Organisms → cellular organisms → Bacteria → Proteobacteria	1622	Open in IMG/M
3300033475\|Ga0310811_11064776	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300033480\|Ga0316620_12409318	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.45%
Host-Associated	Host-Associated	13.64%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.82%
Aquatic	Environmental → Aquatic	13.64%
Plants	Host-Associated → Plants	13.64%
Solid Waste	Engineered → Solid Waste	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Freshwater	Environmental → Aquatic → Freshwater	13.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.36%
Peat	Environmental → Terrestrial → Peat	5.45%
Grass	Engineered → Solid Waste → Grass	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.82%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.91%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.55%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.82%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.91%
Peat	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006426	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_054 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300029889	Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029995	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_2	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_06982161	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MKAFRNLLRRTPFYGAYKALGHYPDYWYWQLRGRPIRSPHLLKQ
JGIcombinedJ26739_1013427091	3300002245	Forest Soil	MKALRKLLQRTPFYGVYKSLGHYPDYWYWKLRGEPVRSPHLLKQRTVREYAQR
Ga0062595_1002873201	3300004479	Soil	MRAFRKLLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHL
Ga0062595_1015410062	3300004479	Soil	MKSLRHLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLKQRTVREYAERFGLR
Ga0070682_1005162642	3300005337	Corn Rhizosphere	MKSLRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHL
Ga0068868_1019523552	3300005338	Miscanthus Rhizosphere	MLERSMKAFRKILARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQRTVREYAGRYGLRVLVET
Ga0070710_105898722	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKAFRKLLQRTPFYGVYKALGHHPDYWYWKLRGEPIRSPHLLKQRTVRDYAQR
Ga0070681_101590931	3300005458	Corn Rhizosphere	VKAFRKFLKRTPFYGLYKAAGHYPDFWYWKLRGEPIRSPH
Ga0070681_104298672	3300005458	Corn Rhizosphere	MKALRNLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLKQ
Ga0070681_118643292	3300005458	Corn Rhizosphere	MKSLRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLK
Ga0073909_102774932	3300005526	Surface Soil	MLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLLKQRT
Ga0070693_1001985231	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRSFRKFLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPH
Ga0066702_102768622	3300005575	Soil	LKAFRKLLQRTPLYGAYKALGHYPDYWYWKLRGEPVRSP
Ga0066702_105664792	3300005575	Soil	MKTLRKLLARTPFYGVYKSLGHYPDYWYWKLRGQPIRSPHLLK
Ga0066654_106676982	3300005587	Soil	LLQRTPLYGLYKTLGHYPDYWYWKLRGEPVRSPHLLKQRIV
Ga0068856_1021068491	3300005614	Corn Rhizosphere	MKAFRKFLAHTPFYGVYKSLGHYPDYWYWKLRGEPIR
Ga0068852_1018884911	3300005616	Corn Rhizosphere	MKAFRKFLAHTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLL
Ga0070717_101201194	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LKAFRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPLRSPHLVKQRAVQEYADRYRLR
Ga0075037_18690922	3300006426	Permafrost Soil	MKAFRKLLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLLKQRTVRDYAQRYGLRVLVETG
Ga0099829_113752561	3300009038	Vadose Zone Soil	VYGAYKALGHYPDYWYWILRGRPLRSPHLLKQKVVRGYGEELGLKTLVETGT
Ga0105240_114916761	3300009093	Corn Rhizosphere	MKALRNLLRRTPFYGLYKAAGHYPDDWYWKLRGEPVRSPHLLKQRTVREYAQR
Ga0105245_1000257417	3300009098	Miscanthus Rhizosphere	MKAFRRFLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQRTVRDYAQRDG
Ga0116108_12359001	3300009519	Peatland	MLVSFGGGILKTFRRLLQRTPVYGAYKALGHYPDYWYWIVRGRPPRSPHLLKQKVVREYG
Ga0105238_107114353	3300009551	Corn Rhizosphere	MFRQLLRRTPFYGAYKKLGHYPDYWYWKLRGEPVRAPHLLKQ
Ga0105854_11081252	3300009660	Permafrost Soil	MKAFRKLLQRTPFYGVYKALGHYPDYWYWKLRGEPI
Ga0126373_109320593	3300010048	Tropical Forest Soil	LKRSPLYAGFKQLGHYPDYWYWKLRGQPRRIPHIVKQRAVLEYAQ
Ga0126376_103427261	3300010359	Tropical Forest Soil	MKAFRNLLRRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLL
Ga0126372_121253211	3300010360	Tropical Forest Soil	LRALRKLLQRTPFYGAYKTLGQYPDYWYWKLRGEPVRSPHLLKQ
Ga0134128_110593841	3300010373	Terrestrial Soil	MKSFRKFLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQR
Ga0105239_114686992	3300010375	Corn Rhizosphere	VKAFRKFLKRTPFYGLYKAAGHYPDFWYWKLRGEPIRSPHLIKQRTVREYAERF
Ga0105239_124877451	3300010375	Corn Rhizosphere	MKSFRKLLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQRTVREYAQRYGLR
Ga0126381_1013012251	3300010376	Tropical Forest Soil	MKALRKMLQRTPFYGAYKSLGHYPDYWYWKLRGEPVRSPHLVKQRAVQEYAE
Ga0134126_123631391	3300010396	Terrestrial Soil	MRSLRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLVKQRTVREYAER
Ga0126383_109114571	3300010398	Tropical Forest Soil	LKAFRKLLKKTPLYGVYKTLGHYPDYWYWKLRGEPERTPHL
Ga0126383_121103431	3300010398	Tropical Forest Soil	LRALRKLLQRTPFYGAYKALGQYPDYWYWKLRGEPVRSPHLIKQRT
Ga0137393_106338942	3300011271	Vadose Zone Soil	LKTFRKLLQRTPLYGAYKALGHYPDYWYWKLRGEPPRSPHLLKQRTVQEYA
Ga0137378_114422121	3300012210	Vadose Zone Soil	LLKRTPVYGVYKALGHHPDYWYWILRGRPPRSPHLLKQKTVRAYGEKYD
Ga0137359_111277442	3300012923	Vadose Zone Soil	MKAFRRFLAQTPFYGAYKSLGHYPDYWYWHLRGQPIRSPHLLKQRTVRDY
Ga0164299_113522461	3300012958	Soil	MKAFRRLLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPH
Ga0164304_104635841	3300012986	Soil	MKAFRKLLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLLKQRTVRDY
Ga0182011_103485511	3300014496	Fen	MLGLPLAEEILKAFRRLLQRTPAYGAYKALGHYPDYWYWILRGRPARSPHLLKQKVVQEYGEKFG
Ga0181525_104110222	3300014654	Bog	LQRTPFYGAYKAAGHYPDYWYWVLRGRPERSPHLLKQKVVREYGERFGLKTLVET
Ga0181522_102403891	3300014657	Bog	MLLVRISEDILKAFRRLLQRTPFYGVYKAIGHYPDYWYWILRGRPERSPHLLKQKVVREYAEKFGLRT
Ga0137409_103371342	3300015245	Vadose Zone Soil	LLQRTPVYGAYKALGHYPDYWYWILRGRPARSPHLLKQKVVREYGEKFGLKT
Ga0137409_108480902	3300015245	Vadose Zone Soil	LLQRTPVYGVYKAVGHYPDYWYWILRGRPTRSPHLLKQKTVREYGERYGLKTLVET
Ga0132256_1034422002	3300015372	Arabidopsis Rhizosphere	LKAFRKLLQRTPFYGAYKALGHYPDYWYWKLRGEPIRSPHLLKQRTVRDYAQRYGLRVLVETGT
Ga0182041_116600732	3300016294	Soil	MKALRKLLQRTPFYGAYKSLGHYPDYWYWKLRGEPIRSPHLVKQRAVREY
Ga0181515_14762422	3300016730	Peatland	LLQRTPVYGAYKALGHYPDYWYWILRGRPLRSPHLLKQKVVREYGERFGLK
Ga0187803_102495012	3300017934	Freshwater Sediment	LKAFRKLLRRAPFYGAIKSIGHYPDYWYWKLRPRPVRAPHLVKQRALREYAKRYGLRTLIETG
Ga0187775_100681403	3300017939	Tropical Peatland	LKAFRKVLRRLPFYGAIKSLGHYPDYWYWKLRPAPVRAPHLVKQRAVRAYA
Ga0187853_103334572	3300017940	Peatland	LQRTPVYGAYKAIGHYPDYWYWILRGRPERSPHLLKQKVVRQYGERYGLRTLVET
Ga0187850_102816132	3300017941	Peatland	VKSFRKFLQGMPFYTAYKSLSHYPDYWYWKLRPHPVRSPHLLKQR
Ga0187819_103849622	3300017943	Freshwater Sediment	LLQRTPVYGAYKAIGHYPDYWYWILRGRPERSPHLLKQKVVREYGEQFGLKTLV
Ga0187847_109120861	3300017948	Peatland	LLQRTPVYGAYKAIGHYPDYWYWILRGRPERSPHLLKQKVVREYAEKFGLGTLV
Ga0187777_112183701	3300017974	Tropical Peatland	MIFRKFLARTPWYGFCKSLGHYPDYGWWLLRGKPVRSPHLVKQRAVREYAARFG
Ga0187860_11603451	3300018014	Peatland	MLVFFRGGILKAFRRLLQRTPVYGAYKALGHYPDYWYWILRGRPSRSPHLLKQKVVREYGERFGLKTL
Ga0187864_103480642	3300018022	Peatland	MKSFRRFLRRMPFYPAYKSLSHYPDYWYWKLRPHPVRSPHLLKQRTVLEYA
Ga0187863_100644661	3300018034	Peatland	MLLVRISEDILKAFRRLLQRTPFYGVYKAIGHYPDYWYWILRGRPERSPHLLKQKVVREYAEKFGLGTLVE
Ga0187851_100588791	3300018046	Peatland	MLLVRISEDILKAFRRLLQRTPFYGVYKAIGHYPDYWYWILRGRPERSPHLLKQKVVREYAEKFGL
Ga0187851_105696841	3300018046	Peatland	MLVSFGGGILKTFRRLLQRTPVYGAYKALGHYPDYWYWIVRGRPPRSPHLLKQKVVG
Ga0187859_109078881	3300018047	Peatland	LQRTPVYGVYKAVGHYPDYWYWILRGRPARSPHLLKQKAVREYGEKFALKT
Ga0187765_108662912	3300018060	Tropical Peatland	MIFRKFLARTPWYGFCKSLGHYPDYGWWLLRGKPVRSPHLVKQRAVREYAARFGLRVLVE
Ga0187769_106718931	3300018086	Tropical Peatland	MANPLSKLLKRTSFYPAWKRLGHYPDFLYWKLRGEPLRSPHLLKQRAVTEYARRFGLRILIETG
Ga0187770_104207331	3300018090	Tropical Peatland	MLFHSCSVEETLKAFRRLLRRTPFYGAYKAIGHYPDYWYWVLRGRPERSPHLLKQKVVREYGER
Ga0066667_117518321	3300018433	Grasslands Soil	LKAFRKLLQRTPFYGLYKALGHYPDYWYWLLRGKPVRSPHLLKQRTVQQYAHQYGLRI
Ga0179592_100667911	3300020199	Vadose Zone Soil	LKAFRRLLQRTPLYGAYKVLGHYPDYWYWILRGRPARSPHLLKQKVVREYGEKFVLKT
Ga0210399_101707983	3300020581	Soil	LRAIRKLLRHAPGYGYYKRLSHYPDYWYWELRGKPARSPHLLKQRAVREYAERYGL
Ga0154015_11999631	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MKALRNLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLKQRTVREY
Ga0154015_15817281	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MKSLRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLKQRTVREYAQRF
Ga0210397_106501361	3300021403	Soil	MKAFRKMLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLLKQRTVRDYAQRYGL
Ga0210389_102371653	3300021404	Soil	LKRLPIYTAFKQLGHYPDYWYWKVRGEPRRIPHLLKQRTVLEYARAYRLTTLVET
Ga0210394_109498881	3300021420	Soil	LLRRTPWYAAYKRLGHYPDYLYWHLRGKPVRSPHLLKQRTVREFAEKYGLKILIE
Ga0126371_114392391	3300021560	Tropical Forest Soil	MKAFRKFLQRTPFYGAYKALGHYPDYWYWQLRGRPIRSPHLLKQRTVREYAE
Ga0242642_10685202	3300022504	Soil	LLQRTPLYGAYKALGHYPDYWYWKLRGEPERSPHLLKQRTVREYANGTDCAF
Ga0179591_10213866	3300024347	Vadose Zone Soil	LKAFRKFLQRTPFYGLYKSAGHYPDYWYWQLRGKPVRSPHLLKQRTVREYAR
Ga0207695_105304551	3300025913	Corn Rhizosphere	MKALRNLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRS
Ga0207695_115071142	3300025913	Corn Rhizosphere	MFRQFVRRTPFYGAYKKLGHYPDYCYWKLRGEPVRAPHLLKQRTVRDYARRSQLRVRAKLRARRAISR
Ga0207700_115699911	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VRSFRQLLRRTPFYGAYKRLGHYPDYCYWKLRGEPVRSPHLLKQ
Ga0207700_118412311	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LKAFRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPLRSPHLVKQRAVQEYADRYRL
Ga0207665_112099682	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKALRKLLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQRTVR
Ga0207667_103635732	3300025949	Corn Rhizosphere	MKSLRKLLRRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLKQRTVREYAERFGLRALVVTGPERGLTEC
Ga0207677_108912582	3300026023	Miscanthus Rhizosphere	MKALRKMLQRTPFYGVYKSLGHYPDYWYWKLRGEPIRSP
Ga0207698_115310631	3300026142	Corn Rhizosphere	MKALRKMLQRTPFYGVYKSLGHYPDYWYWKLRGEPIRSPH
Ga0209055_13042442	3300026309	Soil	LKAFRKLLQRTPLYGAYKALGHYPDYWYWKLRGQPIRSPHLLKQHTVRDHAERFGL
Ga0179587_101130622	3300026557	Vadose Zone Soil	LKAFRRLLQRTPLYGAYKVLGHYPDYWYWILRGRPARSPHLLKQKVVREYGEKFVLKTLVET
Ga0209011_12220291	3300027678	Forest Soil	LKAFRKLLQRTPLYGAYKALGHYPDYWYWKLRGEPPRSPHLLKQHTVCEYAQRYGLRV
Ga0209073_104662361	3300027765	Agricultural Soil	MKAFRKFLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQRTVRDYAQRYGLRVLV
Ga0209811_100200001	3300027821	Surface Soil	MKAFRKLLQRTPFYGVYKALGHYPDYWYWKLRGEPIRSPHLLKQHTVRDYAQR
Ga0209811_103013182	3300027821	Surface Soil	MKAFRKFLQRTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQHTVCDYAQR
Ga0268264_126465322	3300028381	Switchgrass Rhizosphere	MFRQLLRRTPFYGAYKKLGHYPDYWYWKLRGEPVRAPHLLKQRTVRDYARRS
Ga0302198_103588551	3300028765	Bog	LTFSHGGILKAFRRLLQRTPLYGAYKALGHYPDYWYWNLRGRPQRSPHLLK
Ga0246001_10771451	3300029889	Peat	MLVFFRGGILKAFRRLLQRTPVYGAYKALGHYPDYWYWILRGRPSRSPHLLKQKVVREYGEKFGLKI
Ga0311340_113452531	3300029943	Palsa	MKSLRKFLRRMPFYSAYKSLFHHPDYWYWKLRPPPKRSPHLVKQRALLEYARQFGLRTLIETG
Ga0302150_100791541	3300029956	Bog	LLQRTPLYGAYKALGHYPDYWYWNLRGRPQRSPHLLKQKVVRHYGEKYGL
Ga0302210_102106942	3300029995	Fen	VEDTLKAFRRLLARTPVYGAYKAVGHYPDYWYWILRGRPQRSPHLLKQKVVREY
Ga0302286_100552812	3300030047	Fen	LKAFRRLLARTPVYGAYKAVGHYPDYWYWILRGRPQRSPHLLKQRVVREYGERFGLK
Ga0310813_108237571	3300031716	Soil	MKAFRRFLARTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLLKQRTVRDYAQRYGLRVL
Ga0307474_112845381	3300031718	Hardwood Forest Soil	LLQRTPLYGAYKALGHYPDYWYWILRGRPARSPHLLKQKVVREYGESFGLHTLVE
Ga0307478_102651341	3300031823	Hardwood Forest Soil	LKAFRKLLQRTPLYGVYKTLGHYPDYWYWQLRGKPVRSPHLLKQHTVREH
Ga0308173_108593232	3300032074	Soil	MKALRKFLQRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLLKQRTVREYAERFGMHVLVET
Ga0308173_114106311	3300032074	Soil	LKAFRNLLRRTPFYGLYKSAGHYPDYWYWKLRGEPLR
Ga0311301_109972092	3300032160	Peatlands Soil	LLQRTPVYGAYKALGHYPDYWYWILRGRPPRSPHLLKQKVVREYGERF
Ga0307471_1038670862	3300032180	Hardwood Forest Soil	LKALRKFLRRTPWYGLYKRLGHYPDYWYWQLRGKPIRSPHLLKQRTV
Ga0306920_1011714042	3300032261	Soil	LKAFRKLLQRTPFYGLYKAAGHYPDYWYWKLRGEPVRSPHLVKQRAVREYAGRYRL
Ga0335082_110244101	3300032782	Soil	MPSQRALLKRLPFYPALKQLGHYPDYWWWKLRGEPRRIPHLVKQRTVVE
Ga0335074_100240841	3300032895	Soil	MQRMPFYGGYKSLSHYPDYWYWKLRSHPVRSPHLLKQRA
Ga0335072_103488901	3300032898	Soil	MQRMPFYGAYKSLSHYPDYWYWKLRPHPVRSPHLLKQRTVIEYATKFGLRTLV
Ga0335073_107864301	3300033134	Soil	LKSFRKFMQRMPFYGVYKSLSHYPDYWYWKLRPHP
Ga0310811_110647762	3300033475	Soil	MKAFRKFLQRTPFYGVYKSLGHYPDYWYWKLRGEPIRSPHLL
Ga0316620_124093181	3300033480	Soil	MKAFRRFLARTPFYGVYKSLGHYPDYWYWKLRGQPIRSPHLLKQRTVRDYAQRY

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087214

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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