Metagenome / Metatranscriptome Family F087157

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087157
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLADARAALAELAASDD
Number of Associated Samples	76
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.36 %
% of genes near scaffold ends (potentially truncated)	29.09 %
% of genes from short scaffolds (< 2000 bps)	85.45 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (43.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.33% β-sheet: 0.00% Coil/Unstructured: 55.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF12680	SnoaL_2	48.18
PF13826	DUF4188	9.09
PF09529	Intg_mem_TP0381	6.36
PF07969	Amidohydro_3	5.45
PF01979	Amidohydro_1	4.55
PF01699	Na_Ca_ex	2.73
PF04055	Radical_SAM	2.73
PF07690	MFS_1	1.82
PF01326	PPDK_N	0.91
PF00334	NDK	0.91
PF00574	CLP_protease	0.91
PF02958	EcKL	0.91
PF01569	PAP2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	2.73
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	2.73
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG0105	Nucleoside diphosphate kinase	Nucleotide transport and metabolism [F]	0.91
COG0510	Thiamine kinase or a related kinase	Coenzyme transport and metabolism [H]	0.91
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.91
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG2334	Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist	Signal transduction mechanisms [T]	0.91
COG3173	Predicted kinase, aminoglycoside phosphotransferase (APT) family	General function prediction only [R]	0.91
COG3178	Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.00 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	89.09 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	89.09 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	65.45 %
Unclassified	root	N/A	10.00 %

Name	Rank	Taxonomy	Distribution
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	17.27 %
Unclassified	root	N/A	10.00 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.82 %

Name	Rank	Taxonomy	Distribution
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	14.55 %
Unclassified	root	N/A	10.00 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.00 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	5.45 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.00 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	1.82 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.00 %
Nocardioides sp. JS614	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. JS614	0.91 %
Nocardioides sp. URHA0032	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. URHA0032	0.91 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_106588924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2430	Open in IMG/M
3300001686\|C688J18823_10052571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2820	Open in IMG/M
3300002568\|C688J35102_118866752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300002568\|C688J35102_118892294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	610	Open in IMG/M
3300002568\|C688J35102_119912502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	812	Open in IMG/M
3300002568\|C688J35102_120076509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	870	Open in IMG/M
3300002568\|C688J35102_120199975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	924	Open in IMG/M
3300002568\|C688J35102_120393770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300002568\|C688J35102_120846964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1799	Open in IMG/M
3300002568\|C688J35102_120987131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. JS614	7181	Open in IMG/M
3300003323\|rootH1_10382240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1256	Open in IMG/M
3300004081\|Ga0063454_100108093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1350	Open in IMG/M
3300004081\|Ga0063454_101322697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300004114\|Ga0062593_100021245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. URHA0032	3437	Open in IMG/M
3300004114\|Ga0062593_101689952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	691	Open in IMG/M
3300004153\|Ga0063455_100026412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1674	Open in IMG/M
3300004153\|Ga0063455_100524024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	746	Open in IMG/M
3300004153\|Ga0063455_100877206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	632	Open in IMG/M
3300004156\|Ga0062589_100940794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	800	Open in IMG/M
3300004479\|Ga0062595_100093735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1569	Open in IMG/M
3300004479\|Ga0062595_100999449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	718	Open in IMG/M
3300005168\|Ga0066809_10205986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	533	Open in IMG/M
3300005329\|Ga0070683_100013624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	7097	Open in IMG/M
3300005329\|Ga0070683_100652749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1007	Open in IMG/M
3300005337\|Ga0070682_101545590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300005339\|Ga0070660_101526476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M
3300005355\|Ga0070671_101948140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300005366\|Ga0070659_100958865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	749	Open in IMG/M
3300005458\|Ga0070681_12045937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300005547\|Ga0070693_100849525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	680	Open in IMG/M
3300005547\|Ga0070693_101168030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	590	Open in IMG/M
3300005548\|Ga0070665_100000868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	39125	Open in IMG/M
3300005564\|Ga0070664_102030186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	546	Open in IMG/M
3300005577\|Ga0068857_101756599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	607	Open in IMG/M
3300005614\|Ga0068856_100996823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	856	Open in IMG/M
3300005614\|Ga0068856_101523323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	682	Open in IMG/M
3300005713\|Ga0066905_101582126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	599	Open in IMG/M
3300005764\|Ga0066903_100616466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1886	Open in IMG/M
3300006580\|Ga0074049_12767311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	568	Open in IMG/M
3300006580\|Ga0074049_12850963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300006606\|Ga0074062_12997001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	576	Open in IMG/M
3300006806\|Ga0079220_10566239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	797	Open in IMG/M
3300006954\|Ga0079219_11726980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	581	Open in IMG/M
3300009093\|Ga0105240_12316321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	556	Open in IMG/M
3300009098\|Ga0105245_10024442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5305	Open in IMG/M
3300009098\|Ga0105245_10629547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1102	Open in IMG/M
3300009098\|Ga0105245_10998717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	881	Open in IMG/M
3300009098\|Ga0105245_12007442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	632	Open in IMG/M
3300009148\|Ga0105243_10279938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	1502	Open in IMG/M
3300009148\|Ga0105243_10835317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	911	Open in IMG/M
3300009176\|Ga0105242_10572884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1086	Open in IMG/M
3300009553\|Ga0105249_11852331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300009789\|Ga0126307_10163771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1782	Open in IMG/M
3300009840\|Ga0126313_10683522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	831	Open in IMG/M
3300009870\|Ga0131092_10019894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	10677	Open in IMG/M
3300010040\|Ga0126308_10358409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	967	Open in IMG/M
3300010044\|Ga0126310_10000702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	11975	Open in IMG/M
3300010044\|Ga0126310_10611318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
3300010359\|Ga0126376_12393248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300010362\|Ga0126377_10153742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2164	Open in IMG/M
3300010366\|Ga0126379_11594005	Not Available	758	Open in IMG/M
3300010371\|Ga0134125_11903540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300012212\|Ga0150985_111684298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1440	Open in IMG/M
3300012212\|Ga0150985_115874319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	789	Open in IMG/M
3300012212\|Ga0150985_117669557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1519	Open in IMG/M
3300012469\|Ga0150984_106404336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300012469\|Ga0150984_119365900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	882	Open in IMG/M
3300012943\|Ga0164241_10382265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1009	Open in IMG/M
3300012951\|Ga0164300_10805040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300012960\|Ga0164301_11017492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300013102\|Ga0157371_10589711	Not Available	826	Open in IMG/M
3300013102\|Ga0157371_10809081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300013306\|Ga0163162_12350399	Not Available	613	Open in IMG/M
3300013307\|Ga0157372_11472844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	784	Open in IMG/M
3300013307\|Ga0157372_12713845	Not Available	568	Open in IMG/M
3300013308\|Ga0157375_10988189	Not Available	982	Open in IMG/M
3300013308\|Ga0157375_12527189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	613	Open in IMG/M
3300014325\|Ga0163163_13180756	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300014968\|Ga0157379_12546041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	512	Open in IMG/M
3300015371\|Ga0132258_10193053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4933	Open in IMG/M
3300015371\|Ga0132258_10694137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	2562	Open in IMG/M
3300015374\|Ga0132255_100385153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2038	Open in IMG/M
3300015374\|Ga0132255_101789393	Not Available	933	Open in IMG/M
3300021445\|Ga0182009_10668117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300025899\|Ga0207642_10558259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	708	Open in IMG/M
3300025901\|Ga0207688_10436648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	815	Open in IMG/M
3300025911\|Ga0207654_10987782	Not Available	612	Open in IMG/M
3300025927\|Ga0207687_10425790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1096	Open in IMG/M
3300025927\|Ga0207687_11071728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	692	Open in IMG/M
3300025934\|Ga0207686_10723794	Not Available	793	Open in IMG/M
3300025935\|Ga0207709_10794306	Not Available	764	Open in IMG/M
3300025938\|Ga0207704_10871806	Not Available	756	Open in IMG/M
3300025941\|Ga0207711_10442223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1210	Open in IMG/M
3300025944\|Ga0207661_10002327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13090	Open in IMG/M
3300025944\|Ga0207661_10593614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1016	Open in IMG/M
3300025945\|Ga0207679_10191283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1701	Open in IMG/M
3300025961\|Ga0207712_11719766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300026121\|Ga0207683_10341756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1373	Open in IMG/M
3300028379\|Ga0268266_10001912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	23423	Open in IMG/M
3300028778\|Ga0307288_10212704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300028802\|Ga0307503_10062407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1467	Open in IMG/M
3300028802\|Ga0307503_10071651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1395	Open in IMG/M
3300031184\|Ga0307499_10112803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	758	Open in IMG/M
3300031232\|Ga0302323_101065832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300031716\|Ga0310813_11737637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300031938\|Ga0308175_100502291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1289	Open in IMG/M
3300031996\|Ga0308176_10131981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2257	Open in IMG/M
3300031996\|Ga0308176_11884035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300031996\|Ga0308176_12430333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	559	Open in IMG/M
3300032896\|Ga0335075_11630441	Not Available	529	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.55%
Host-Associated	Host-Associated	44.55%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.55%
Plants	Host-Associated → Plants	44.55%
Wastewater	Engineered → Wastewater	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.64%
Peat	Environmental → Terrestrial → Peat	0.91%
Roots	Host-Associated → Plants → Roots	0.91%
Rhizome	Host-Associated → Plants → Rhizome	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.91%
Loam	Environmental → Terrestrial → Soil → Loam	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	12.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.64%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1065889242	3300000956	Soil	MSSSDSIDAPSDIPQQPEHSTSELDPAIAEAVDGVTNRFGAEGLAEMIAYAQERLAEARAALEQLGDEVE*
C688J18823_100525713	3300001686	Soil	MSSSDSIDAPSDIPEQPEHLAVVDPAIEEAVDGVTNRFGAEGLEQMIAYAEQSLTAARAALDELGDTDD*
C688J35102_1188667522	3300002568	Soil	MSSSDSIDAPTDTPEPPEHSVADDVDPAIEEAVDGVTNRFGAQGLEQMIAYAETSLATARAALEELADSDE*
C688J35102_1188922942	3300002568	Soil	WMAGMSSSDSIDAPSDIPDQPEHSASQLDPAIAEAVDGVTNRFGVEGLEQMISYAETSLTKARAALEQLSDEVE*
C688J35102_1199125022	3300002568	Soil	MVGMSSSDSIEAPSDIPDQPEHSTPELDPAIAEAVDGITNRFGAEGLEAMIGYAETSLAEARAAL
C688J35102_1200765092	3300002568	Soil	MSSSDSIDAASDIPEQPEHSGTTLDPLIAEAVDGVTNRFGAEGLEQMIAYAQASLTDARASLEQLSDAAE*
C688J35102_1201999751	3300002568	Soil	MSSSDSIDAPDAIHDQPEHSGDLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLADARAALAELAASDD*
C688J35102_1203937702	3300002568	Soil	MSSSDSIDAPSDIPDQPEHAVPAVDPAIEDAVDGVTNRFGAEGLEQMIAYAERSLTEARAALEELADSPE*
C688J35102_1208469641	3300002568	Soil	MSSSDSIDAPSDIHAQPEHAGTELDPAIAEAVDGVTNRFGAEGLEQMITYAEKSLAIARAALEQLADTVD*
C688J35102_1209871316	3300002568	Soil	MSNSDSIDAPADIHDQPEHSATDIDPVIAEAVDTVANRFGAEGLAQMIAYSEKSLAEARAALDELADSID*
rootH1_103822402	3300003323	Sugarcane Root And Bulk Soil	MSSSDSIDAPSDIHEQPEHASELDPAIAEAVDGVTNRFGADGLEQMIRYAEQRLTEARAALDELSDSGD*
Ga0063454_1001080931	3300004081	Soil	MSSSDSIDAPSDIHAQPEHSGTELDPAIAEAVDGVTNRFGAEGLEQMITYAEKSLAIARAALEQLADTVD*
Ga0063454_1013226972	3300004081	Soil	MSSSDSIDAPSDIPDQPEHSGTGLDPAIAEAVDGVTNRFGAEGLEQMITYAEKSLATARAALEQLADTPD*
Ga0062593_1000212454	3300004114	Soil	MSSSDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE*
Ga0062593_1016899522	3300004114	Soil	MDAMSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEKLAASDD*
Ga0063455_1000264122	3300004153	Soil	MSSSDSIDAPIDTPLQPEHSATDLDPAIAEAVDGVTNRFGAEGLEQMIAYAETSLTTARAALAELADAAE*
Ga0063455_1005240241	3300004153	Soil	MARMSNSDSIDAPAEIRDQPEHAAELDPAIAEAVDGVTNRFGAEGLEQMIAYGEKSLAQARAALEALGDT
Ga0063455_1008772061	3300004153	Soil	PSDIPDQPEHAVPAVDPAIEDAVDGVTNRFGAEGLEQMIAYAERSLTEARAALEELADSPE*
Ga0062589_1009407941	3300004156	Soil	MVCVWMVGMSSSDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE*
Ga0062595_1000937353	3300004479	Soil	MSTSDSIDAGSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDAAE*
Ga0062595_1009994492	3300004479	Soil	MDAMSSSDSIDAPAQPPDQPEHVAELDPAIAEAVDGVTNRFGAEGLEQMIGYAGDRLAEARAALDQLAETDD*
Ga0066809_102059861	3300005168	Soil	MSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLADARAALAELAASDD*
Ga0070683_1000136242	3300005329	Corn Rhizosphere	MSSSDSTDTPDRPDPSASEVDPAIAEAVDGVTNRFGAEGLESMIAYAETSLTQARAALDELADTVD*
Ga0070683_1006527492	3300005329	Corn Rhizosphere	MSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEQLAASDD*
Ga0070682_1015455902	3300005337	Corn Rhizosphere	MSSSDSIDAPSDIPQQPQHSAPAVDPAIAEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPDGD*
Ga0070660_1015264761	3300005339	Corn Rhizosphere	MAVMSTSDSIDAGSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDAAE*
Ga0070671_1019481402	3300005355	Switchgrass Rhizosphere	MSSSDSTDDPADIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE*
Ga0070659_1009588651	3300005366	Corn Rhizosphere	VGSVPCVFMDAMSSSDSIDAPAQPPDQPEHVAELDPAIAEAVDGVTNRFGAEGLEQMIGYAGDRLAEARAALDQLAETDD*
Ga0070681_120459371	3300005458	Corn Rhizosphere	MVVMSSSDSVDAPADPPYQPEFAPADLDPLIAEAVDGVTNRFGAEGLEAMIGYAETSLAAARAALEELADAVDET*
Ga0070693_1008495251	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	SSSDSIDAPTDTPEPPEHSVADDVDPAIEEAVDGVTNRFGAQGLEQMIAYAETSLATARAALEELADSDE*
Ga0070693_1011680301	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	TCVWMSGMSSSDSIDAPSDTHDQPEHTTAAVDPAIEEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPEGD*
Ga0070665_1000008685	3300005548	Switchgrass Rhizosphere	MSSSDSIDASSDIHDQPEHSVPDLDPAIAEAVDGVTNRFGAEGLEAMIRYAESSLADARAALEELAEAVDPD*
Ga0070664_1020301862	3300005564	Corn Rhizosphere	TDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE*
Ga0068857_1017565992	3300005577	Corn Rhizosphere	MNSSDSIDAPSDTHDQPALSEPDLDPAIAEAVDGVTNRFGADGLEAMIRYAETSLAEARA
Ga0068856_1009968232	3300005614	Corn Rhizosphere	MDAMSSSDSIDAPSDIPQQPEHSAPAVDPAIEEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPDGD*
Ga0068856_1015233232	3300005614	Corn Rhizosphere	IDAPAQPPDQPEHVAELDPAIAEAVDGVTNRFGAEGLEQMIGYAGDRLAEARAALDQLAETDD*
Ga0066905_1015821261	3300005713	Tropical Forest Soil	RPHPAEVRGRPPRCVWMARMSSSDSIDAPSDIPEQPEHASGLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLAKAREALEELSEDQ*
Ga0066903_1006164662	3300005764	Tropical Forest Soil	MSSSDSNEAPIEPSQHPEHSAQELDPLIAEAVDGVTNRFGVEGLEQMIAYAEESLVGACAALERLGDET*
Ga0074049_127673112	3300006580	Soil	MSSSDSIDAPSDIPQQPEHSAPAVDPAIEEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPEGD*
Ga0074049_128509632	3300006580	Soil	MSSSDSIDAPSDIPQQPEHSAPAVDPAIEEAVDGVTNRFGAEGLEQMIAYAETSLTEARAALAELADNTD*
Ga0074062_129970012	3300006606	Soil	MSSSDSIDAPTDTPEQPEHTVSADIDPAIAEAVDGVANRFGAQGLEQMIGYAEKSLEEARAALAQLADAVD*
Ga0079220_105662392	3300006806	Agricultural Soil	MSSSDSIDAPTDLPEQPEHSASDLDPAIAEAVDGVTNRFGADGLEQMIAYAEESLTRARAALAELGDAVE*
Ga0079219_117269802	3300006954	Agricultural Soil	MSSSDSIDAPTDLPEQPEHSGSDIDPAIAEAVDGVTNRFGAEGLEAMIAYAEESLAEARAALAKLADAVE*
Ga0105240_123163211	3300009093	Corn Rhizosphere	MVGMSSSDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE
Ga0105245_100244422	3300009098	Miscanthus Rhizosphere	MVGMSSSDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE*
Ga0105245_106295472	3300009098	Miscanthus Rhizosphere	MSGMSSSDSIDAPTDNPEPPEHSVADDVDPAIEEAVDGVTNRFGAQGLEQMIAYAETSLATARAALEELADSDE*
Ga0105245_109987172	3300009098	Miscanthus Rhizosphere	MFPMSSSDSIDAPSDIPQQPEHSAPAVDPAIEEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPEGD*
Ga0105245_120074422	3300009098	Miscanthus Rhizosphere	MDAMSSSDSINAPDTIHDQPEHSGDLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLADARAALAELAASGD*
Ga0105243_102799383	3300009148	Miscanthus Rhizosphere	MVGMSSSDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEEL
Ga0105243_108353172	3300009148	Miscanthus Rhizosphere	MDAMSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEQLAASDD*
Ga0105242_105728842	3300009176	Miscanthus Rhizosphere	MDAMSSSDSIDAPDDIPVQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPEGD*
Ga0105249_118523311	3300009553	Switchgrass Rhizosphere	MAVMSTSDSIDAGSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQ
Ga0126307_101637712	3300009789	Serpentine Soil	MTRMSSSDSIDAPADTSDQPEHVSNLDPAIAEAVDGVTNRFGPEGLEQMIAYAEQSLAEARAVLEELADPSGEH*
Ga0126313_106835222	3300009840	Serpentine Soil	MARMSNSDSIDAPADIQDQPEHPAELDPAIVEAVDGVTNRFGAEGLEQMIAYGQKSLADARAALDQLAGSLD*
Ga0131092_1001989410	3300009870	Activated Sludge	MSSSDSIDAPTDLPDPPEHSTPALDPAIAEAVDGVTNRFGAEGLEQMIAYAEDRLTEAREALEQLGRTAE*
Ga0126308_103584092	3300010040	Serpentine Soil	MARMSNSDSIDAPADIQDQPEHPAELDPAIVEAVDGVTNRFGAEGLEQMIAYGQKSLAEARAALDQLAGSLD*
Ga0126310_100007023	3300010044	Serpentine Soil	MARMSNSDSIDAPAEIHDQPEHPAELDPAIAEAVDGVTNRFGAEGLEQMIAYGEKSLAQARAALEALGDTVDDR*
Ga0126310_106113181	3300010044	Serpentine Soil	MARMSNSDSIDPVHIQHQPEHFAELDPAIAEAVDGVTNRFGAEGLEQMIAYGQKSLAEARAALDQLAGSLD*
Ga0126376_123932482	3300010359	Tropical Forest Soil	MGVMSSSDSIDPSSQIPEQPEHASDLDPAIAEAVDGVTNRFGAEGLEQMIGYAEKSLAEARAALDELADSVE*
Ga0126377_101537422	3300010362	Tropical Forest Soil	MDVMSSSDSIDAPSPVPGQPEHSSELDPAIAEAVDGVTNRFGAEGLEQMIGYAEKRLEEARTALDELADGG*
Ga0126379_115940052	3300010366	Tropical Forest Soil	DSNDAPTEPSRHPEHSAHELDPLIAEAVDGVTNRFGVEGLEQMIAYAEESLVGARAALERLGDET*
Ga0134125_119035402	3300010371	Terrestrial Soil	MSGMSSSDSIDAPTDTPEPPEHSVADDVDPAIEEAVDGVTNRFGAQGLEQMIAYAETSLATARAALEELADSDE*
Ga0150985_1116842982	3300012212	Avena Fatua Rhizosphere	MARMSSSDSIDAPSDIPDQPEHSGTGLDPAIAEAVDGVTNRFGAEGLEQMITYAEKSLATARAALEQLADTPD*
Ga0150985_1158743192	3300012212	Avena Fatua Rhizosphere	MAGMSSSDSIDAPSDIPDQPEHSASQLDPAIAEAVDGVTNRFGVEGLEQMISYAETSLTKARAALEQLSDEVE*
Ga0150985_1176695573	3300012212	Avena Fatua Rhizosphere	MARMSNSDSIDAPADIHDQPEHSATDIDPVIAEAVDTVANRFGAEGLAQMIAYSEKSLAEARAALDELADSID*
Ga0150984_1064043362	3300012469	Avena Fatua Rhizosphere	LDAFMSSSDSIDAASDIPEQPEHSGTTLDPLIAEAVDGVTNRFGAEGLEQMIAYAQASLTDARASLEQLSDAAE*
Ga0150984_1193659001	3300012469	Avena Fatua Rhizosphere	MAAMSSSDSIDAPSDIPEQPEHLAVVDPAIEEAVDGVTNRFGAEGLEQMIAYAEQSLTAARAALDELGDSTD*
Ga0164241_103822652	3300012943	Soil	MGVMSSSDSIDAPADPPYQPEFAPADLDPLIAEAVDGVTNRFGAEGLEAMISYAETSLAAARAALEDLADAVDET*
Ga0164300_108050402	3300012951	Soil	MVRMSSSDSIDAPTDAPEHPEHTVPDDVDPAIAEAVDGVANRFGAQGLEQMIAYAETALTDARAALAELADSVE*
Ga0164301_110174922	3300012960	Soil	MFPMSSSDSIDAPSDIPQQPEHSSPAVDPAIEEAVDGVTNRFGAEGLEQMIAYAEESLTRARAALAELADAVE*
Ga0157371_105897112	3300013102	Corn Rhizosphere	SIDAPTDNPEPPEHSVADDVDPAIEEAVDGVTNRFGAQGLEQMIAYAETSLATARAALEELADSDE*
Ga0157371_108090812	3300013102	Corn Rhizosphere	MVGMSSSDSTDDPADIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE*
Ga0163162_123503992	3300013306	Switchgrass Rhizosphere	MDAMSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDAAE*
Ga0157372_114728441	3300013307	Corn Rhizosphere	MSSSDSIDAPHDLPEQPEHAAAVDPAIEEAVDGVTNRFGAEGLEQMIAYAEASLTTARAALAELSPEGD*
Ga0157372_127138451	3300013307	Corn Rhizosphere	MKRMSSSDSIDAPTDLPHQPEHSATDLDPAIAEAVDGVTNRFGAEGLEQMIAYAETSLTDARAAQAALGDVVDE*
Ga0157375_109881891	3300013308	Miscanthus Rhizosphere	MKRMSSSDSIDAPTDLPHQPEHSATDLDPAIAEAVDGVTNRFGAEGLEQMIAYAETSLTEARAALAALADVDDE*
Ga0157375_125271892	3300013308	Miscanthus Rhizosphere	MSGMSSSDSIDAPTDNPEHPEHSVADDVDPAIEEAVDGVTNRFGAQGLEQMIAYAETSLATARAALEELADSDE*
Ga0163163_131807562	3300014325	Switchgrass Rhizosphere	MVAMSSSDSIDASSDIHDQPEHSVPDLDPAIAEAVDGVTNRFGAEGLEAMIRYAESSLADARAALEELAEAVDPD*
Ga0157379_125460412	3300014968	Switchgrass Rhizosphere	MDAMSSSDSIDAPAQPPDQPEHVAELDPAIAEAVDGVTNRFGAEGLEQMIGYAGDRLAEARTALDRS
Ga0132258_101930532	3300015371	Arabidopsis Rhizosphere	MTGMSSSDSIDAPSDIPEQPEHSADVDPAIAEAVDGVTNRFGAEGLEQMIAYAETSLATARAALEQLTGDPE*
Ga0132258_106941372	3300015371	Arabidopsis Rhizosphere	MAVMSTSDSIDADSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDQAE*
Ga0132255_1003851531	3300015374	Arabidopsis Rhizosphere	MSSSDSIDAPSDIPEQPEHSADVDPAIAEAVDGVTNRFGAEGLEQMIAYAETSLATARAA
Ga0132255_1017893931	3300015374	Arabidopsis Rhizosphere	MAVMSTSDSIDADSDIPEQPEHSVPGLDPLIAEAVDRVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDQAE*
Ga0182009_106681172	3300021445	Soil	MSSSDSIDAAPDTPDQPEHSSGLDPAIAEAVDGVTNRFGAEGLEQMIGYAQASLAQARAALEELAASGD
Ga0207642_105582591	3300025899	Miscanthus Rhizosphere	MSSSDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE
Ga0207688_104366482	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSTSDSIDAGSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDAAE
Ga0207654_109877821	3300025911	Corn Rhizosphere	MSSSDSIDAPSDTHDQPEHSDPGLDPAIAEAVDGVTNRFGADGLEAMIRYAETSLAEARAALEELADS
Ga0207687_104257901	3300025927	Miscanthus Rhizosphere	SRAERSWDGRARCVWMAVMSTSDSIDAGSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQLSDAAE
Ga0207687_110717282	3300025927	Miscanthus Rhizosphere	MDAMSSSDSIDAPAQPPDQPEHVAELDPAIAEAVDGVTNRFGAEGLEQMIGYAGDRLAEARAALDQLAETDD
Ga0207686_107237941	3300025934	Miscanthus Rhizosphere	DSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE
Ga0207709_107943062	3300025935	Miscanthus Rhizosphere	VWMDAMSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEQLAASDD
Ga0207704_108718061	3300025938	Miscanthus Rhizosphere	SDSIDAPDAIHDQPEHSGDLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEQLAASDD
Ga0207711_104422232	3300025941	Switchgrass Rhizosphere	MSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEQLAASDD
Ga0207661_100023272	3300025944	Corn Rhizosphere	MSSSDSTDTPDRPDPSASEVDPAIAEAVDGVTNRFGAEGLESMIAYAETSLTQARAALDELADTVD
Ga0207661_105936141	3300025944	Corn Rhizosphere	AMSSSDSIDAPDAIPDQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALEQLAASDD
Ga0207679_101912831	3300025945	Corn Rhizosphere	SDSTDDPTDIPDQPERASELDPVIAEAVDGVTNRFGAEGLEQMIEYAEASLAEARAALEELAKSVE
Ga0207712_117197662	3300025961	Switchgrass Rhizosphere	MSTSDSIDAGSDIPEQPEHSLPGLDPLIAEAVDGVTNRFGAEGLEQMIAYAQTSLTTARAALQQ
Ga0207683_103417562	3300026121	Miscanthus Rhizosphere	MDAMSSSDSIDAPDAIHDQPEHSGDLDPAIAEAVDGVTNRFGAEGLEQMIAYAEQSLAEARAALDELGGTA
Ga0268266_1000191215	3300028379	Switchgrass Rhizosphere	MSSSDSIDASSDIHDQPEHSVPDLDPAIAEAVDGVTNRFGAEGLEAMIRYAESSLADARAALEELAEAVDPD
Ga0307288_102127042	3300028778	Soil	MSSSDSIDAPDDIPVQPEHSADLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARAALDQLAASDD
Ga0307503_100624071	3300028802	Soil	SDSTHAPTDIPAQPEHSSDLDPIIAEAVDGVTNRFGVEGLEQMIAYAETSLTTARAALEQLSDAVE
Ga0307503_100716513	3300028802	Soil	MSSSDSIDAASDIPEQPEHSGTTLDPLIAEAVDGVTNRFGADGLEQMIAYAQASLTDARAALEKLAEAVE
Ga0307499_101128031	3300031184	Soil	MSSSDSTDAPTDVPAQPEHSSDLDPIIAEAVDGVTNRFGVEGLEQMIAYAETSLTTARAALEQLSDAVE
Ga0302323_1010658322	3300031232	Fen	MSTSDSIDAPSDIPEQPEHSSPALDPAIEEAVDGVTNRFGAEGLEQMIAYAEQSLTEARAALEELANPSD
Ga0310813_117376371	3300031716	Soil	MSSSDSTDDPTDIPDQPERASELNPVIAEAVDGITNRFDAKTLEQMIEYAEASLAEARAALD
Ga0308175_1005022912	3300031938	Soil	MSSSDSVDAPGDIPAQPEHPSELDPAIAAAVDGVTNRFGTEGLEQMIAYAEESLEEARAALEELAEES
Ga0308176_101319813	3300031996	Soil	MSSSDSIDAPSDIHDQPEHSDPGLDPAIAEAVDGVTNRFGADGLEAMIRYAETSLAEARAALEELADSVD
Ga0308176_118840352	3300031996	Soil	MSSSDSIDAAPDTPDQPEHSSGLDPAIAEAVDSVTNRFGAEGLEQMIGYAQTSLAQARAALDELAGSGD
Ga0308176_124303332	3300031996	Soil	MSSSDSIDAPDAIHDQPEHSGDLDPAIAEAVDGVTNRFGAEGLEQMIAYAESSLSDARGALEKLAASDD
Ga0335075_116304412	3300032896	Soil	MSSSDSIDAPSDLPEQPEPAAGTLDPAIAEAVDGVTNRFGAEGLEQMIAYAETSLTAARAALEQLADTPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087157

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences