Metagenome / Metatranscriptome Family F087151

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087151
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	69 residues
Representative Sequence	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTEASEQLDTFYDPIIGLLEGKIKRTIQ
Number of Associated Samples	76
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.09 %
% of genes near scaffold ends (potentially truncated)	30.91 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (22.727 % of family members)
Environment Ontology (ENVO)	Unclassified (45.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.22% β-sheet: 0.00% Coil/Unstructured: 38.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF09361	Phasin_2	30.00
PF13545	HTH_Crp_2	5.45
PF04392	ABC_sub_bind	4.55
PF01047	MarR	2.73
PF09939	DUF2171	1.82
PF13458	Peripla_BP_6	1.82
PF00581	Rhodanese	1.82
PF03466	LysR_substrate	1.82
PF04955	HupE_UreJ	0.91
PF13411	MerR_1	0.91
PF13924	Lipocalin_5	0.91
PF03734	YkuD	0.91
PF00665	rve	0.91
PF07045	DUF1330	0.91
PF13586	DDE_Tnp_1_2	0.91
PF00106	adh_short	0.91
PF13505	OMP_b-brl	0.91
PF00027	cNMP_binding	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.55
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2370	Hydrogenase/urease accessory protein HupE	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.91
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.91
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.91
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
All Organisms	root	All Organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
cellular organisms	root	All Organisms → cellular organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.00 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.18 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.45 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.55 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.91 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.82 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.91 %
Roseomonas harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium sp. AUGA SZCCT0283	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	0.91 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.91 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	0.91 %
Roseomonas harenae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
candidate division NC10 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_339946_length_1613_cov_9.063856	Not Available	1645	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14333729	Not Available	1438	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101589947	Not Available	964	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104496871	Not Available	568	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1057962	Not Available	568	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1000495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5876	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10057002	Not Available	1006	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1068428	Not Available	559	Open in IMG/M
3300004479\|Ga0062595_102097873	Not Available	550	Open in IMG/M
3300004633\|Ga0066395_10574337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	658	Open in IMG/M
3300005169\|Ga0066810_10027052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1000	Open in IMG/M
3300005332\|Ga0066388_100213218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2557	Open in IMG/M
3300005332\|Ga0066388_100635769	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300005332\|Ga0066388_100708625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1612	Open in IMG/M
3300005332\|Ga0066388_100857719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1492	Open in IMG/M
3300005332\|Ga0066388_101714901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1112	Open in IMG/M
3300005332\|Ga0066388_101715719	Not Available	1112	Open in IMG/M
3300005332\|Ga0066388_102639983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300005332\|Ga0066388_102985044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	864	Open in IMG/M
3300005332\|Ga0066388_103080305	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300005332\|Ga0066388_107681484	Not Available	540	Open in IMG/M
3300005332\|Ga0066388_108597034	Not Available	508	Open in IMG/M
3300005713\|Ga0066905_100337848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1198	Open in IMG/M
3300005713\|Ga0066905_101197955	Not Available	679	Open in IMG/M
3300005764\|Ga0066903_100124229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3601	Open in IMG/M
3300005764\|Ga0066903_101213738	Not Available	1401	Open in IMG/M
3300005764\|Ga0066903_101253345	Not Available	1381	Open in IMG/M
3300005764\|Ga0066903_102935783	Not Available	924	Open in IMG/M
3300005764\|Ga0066903_107671925	Not Available	556	Open in IMG/M
3300006605\|Ga0074057_12006107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1249	Open in IMG/M
3300006854\|Ga0075425_100263941	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300009553\|Ga0105249_10425700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0283	1362	Open in IMG/M
3300010043\|Ga0126380_10302227	Not Available	1139	Open in IMG/M
3300010043\|Ga0126380_10561099	Not Available	890	Open in IMG/M
3300010043\|Ga0126380_10570936	Not Available	884	Open in IMG/M
3300010043\|Ga0126380_11085639	Not Available	681	Open in IMG/M
3300010046\|Ga0126384_11682618	Not Available	599	Open in IMG/M
3300010047\|Ga0126382_10279528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1241	Open in IMG/M
3300010047\|Ga0126382_10837826	Not Available	788	Open in IMG/M
3300010358\|Ga0126370_12210863	Not Available	542	Open in IMG/M
3300010359\|Ga0126376_10041357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3205	Open in IMG/M
3300010359\|Ga0126376_10713457	Not Available	967	Open in IMG/M
3300010359\|Ga0126376_11714995	Not Available	664	Open in IMG/M
3300010360\|Ga0126372_10872117	Not Available	900	Open in IMG/M
3300010362\|Ga0126377_11017430	Not Available	895	Open in IMG/M
3300010362\|Ga0126377_12096106	Not Available	642	Open in IMG/M
3300010362\|Ga0126377_12133631	Not Available	636	Open in IMG/M
3300010376\|Ga0126381_103299100	Not Available	637	Open in IMG/M
3300010398\|Ga0126383_10350406	Not Available	1497	Open in IMG/M
3300010868\|Ga0124844_1204666	Not Available	721	Open in IMG/M
3300012899\|Ga0157299_10118350	Not Available	709	Open in IMG/M
3300012901\|Ga0157288_10168475	Not Available	671	Open in IMG/M
3300012948\|Ga0126375_10198013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
3300012948\|Ga0126375_10347401	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1051	Open in IMG/M
3300012955\|Ga0164298_10907999	Not Available	641	Open in IMG/M
3300012957\|Ga0164303_10384759	Not Available	861	Open in IMG/M
3300012960\|Ga0164301_11183795	Not Available	613	Open in IMG/M
3300012971\|Ga0126369_10052654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3486	Open in IMG/M
3300012971\|Ga0126369_10123260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2391	Open in IMG/M
3300012971\|Ga0126369_12440940	Not Available	608	Open in IMG/M
3300012971\|Ga0126369_13120961	Not Available	542	Open in IMG/M
3300012987\|Ga0164307_10225350	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300012988\|Ga0164306_11419966	Not Available	591	Open in IMG/M
3300013296\|Ga0157374_10245450	Not Available	1761	Open in IMG/M
3300015371\|Ga0132258_10561392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2862	Open in IMG/M
3300015371\|Ga0132258_11113141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1996	Open in IMG/M
3300015371\|Ga0132258_11807432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1540	Open in IMG/M
3300015374\|Ga0132255_101524175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1012	Open in IMG/M
3300015374\|Ga0132255_101698413	Not Available	958	Open in IMG/M
3300016387\|Ga0182040_10506629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	965	Open in IMG/M
3300017993\|Ga0187823_10311076	Not Available	550	Open in IMG/M
3300018000\|Ga0184604_10041651	Not Available	1227	Open in IMG/M
3300018028\|Ga0184608_10021512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2346	Open in IMG/M
3300018051\|Ga0184620_10328570	Not Available	518	Open in IMG/M
3300018066\|Ga0184617_1045696	Not Available	1096	Open in IMG/M
3300018067\|Ga0184611_1106262	Not Available	977	Open in IMG/M
3300019361\|Ga0173482_10574570	Not Available	561	Open in IMG/M
3300019869\|Ga0193705_1042574	Not Available	954	Open in IMG/M
3300021078\|Ga0210381_10216451	Not Available	672	Open in IMG/M
3300021344\|Ga0193719_10056279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas harenae	1705	Open in IMG/M
3300021560\|Ga0126371_10236856	Not Available	1935	Open in IMG/M
3300021560\|Ga0126371_10861875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium	1051	Open in IMG/M
3300021951\|Ga0222624_1378651	Not Available	822	Open in IMG/M
3300022195\|Ga0222625_1095457	Not Available	526	Open in IMG/M
3300022534\|Ga0224452_1184979	Not Available	641	Open in IMG/M
3300022694\|Ga0222623_10202553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	770	Open in IMG/M
3300025926\|Ga0207659_11544652	Not Available	567	Open in IMG/M
3300027401\|Ga0208637_1000372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	2478	Open in IMG/M
3300028711\|Ga0307293_10185756	Not Available	662	Open in IMG/M
3300028768\|Ga0307280_10072886	Not Available	1108	Open in IMG/M
3300028787\|Ga0307323_10193464	Not Available	734	Open in IMG/M
3300028814\|Ga0307302_10352531	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300030829\|Ga0308203_1020139	Not Available	860	Open in IMG/M
3300030902\|Ga0308202_1012013	Not Available	1231	Open in IMG/M
3300030903\|Ga0308206_1080818	Not Available	700	Open in IMG/M
3300031058\|Ga0308189_10175422	Not Available	757	Open in IMG/M
3300031058\|Ga0308189_10195561	Not Available	729	Open in IMG/M
3300031226\|Ga0307497_10594847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	559	Open in IMG/M
3300031231\|Ga0170824_123699067	Not Available	607	Open in IMG/M
3300031231\|Ga0170824_128957830	Not Available	636	Open in IMG/M
3300031858\|Ga0310892_10174899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1269	Open in IMG/M
3300031879\|Ga0306919_10238801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1364	Open in IMG/M
3300031910\|Ga0306923_10679763	Not Available	1148	Open in IMG/M
3300031912\|Ga0306921_10223876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2205	Open in IMG/M
3300031940\|Ga0310901_10340540	Not Available	640	Open in IMG/M
3300031943\|Ga0310885_10431838	Not Available	707	Open in IMG/M
3300031954\|Ga0306926_10584623	Not Available	1365	Open in IMG/M
3300032180\|Ga0307471_100414596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1478	Open in IMG/M
3300032261\|Ga0306920_101216883	Not Available	1087	Open in IMG/M
3300033289\|Ga0310914_11696947	Not Available	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.82%
Host-Associated	Host-Associated	8.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.82%
Aquatic	Environmental → Aquatic	10.00%
Plants	Host-Associated → Plants	8.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.82%
Sediment	Environmental → Aquatic → Sediment	6.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Freshwater	Environmental → Aquatic → Freshwater	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.64%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01622630	2140918013	Soil	MTRAEEYRHLADRVRARALEEESLAVRAGWENLAESYIKLAEQTEGSDDLDADNDPILGLLGGSRH
ICChiseqgaiiFebDRAFT_143337293	3300000363	Soil	MTRAEEYRHLADRVRARALEEESLAVRAGWENLAESYIKLAEQTEGSDDLDAVNDPILGLLGGSRH*
INPhiseqgaiiFebDRAFT_1015899472	3300000364	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRVEWENLAASYVCLAEQTEASDQLDLVYDPIVGNLQVNIKRIQ*
INPhiseqgaiiFebDRAFT_1044968712	3300000364	Soil	MTRAEEYRHLAENVRSRAFREESSILKAEWENLAESYIRLAEQTEINEPLDPIHDPILGILSGKRH*
AP72_2010_repI_A01DRAFT_10579622	3300000579	Forest Soil	MTRTEEYRHLAKKVRALAAREESPILSAKWETLAESYVRLAEQAEASEQLDTLV*PIRGFLTGVKNQSDNPITEAV
AF_2010_repII_A01DRAFT_10004959	3300000580	Forest Soil	MTRAEEYRHLANKVRARADREESPILRAEWEILAEGYVRLAEQAEASEQLDTLYDPIIGILEVKSNEQSNNGGDHGTIDIRATKR*
AF_2010_repII_A1DRAFT_100570022	3300000597	Forest Soil	MTRAEEYRHLAEKVRARVAREESPVLRAEWENLAEGYVRLAEQTEASEQLDIFYDPIVGILEGKIKRTIQ*
AP72_2010_repI_A001DRAFT_10684281	3300000893	Forest Soil	HLAEKVRAQASREESPVLRAEWENLAEGYVRLAGQAEASEQLDILYDPIVGILEGKIKRTIQ*
Ga0062595_1020978732	3300004479	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNLQVNIKRIQ*
Ga0066395_105743371	3300004633	Tropical Forest Soil	MTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGVLRVKINRTIQ*
Ga0066810_100270522	3300005169	Soil	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLEASRH*
Ga0066388_1002132184	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTGASEQLDTFYDPIIGLLEGKIKRTIQ*
Ga0066388_1006357693	3300005332	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQCGDDHGTIDIRATKR*
Ga0066388_1007086252	3300005332	Tropical Forest Soil	MTRAEEYKHLANKVRARADGEESPSLRAEWENLAEGYVRLAEQTEASEQLDTLYDPIIGILEGIKRTIQ*
Ga0066388_1008577191	3300005332	Tropical Forest Soil	MTRAEEYRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKIKQTIQ*
Ga0066388_1017149012	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRARADSEESLTLRAEWEILAESYVRLAEQTEASERLDTLYDPIIGVLEGKTKRTIQ*
Ga0066388_1017157192	3300005332	Tropical Forest Soil	MTRAEEYRHLAKSVRVRAAREESPILRAEWENLAEGYVRLAEQTEASEQLDTVYDPIVGILPVKINRTIQ*
Ga0066388_1026399832	3300005332	Tropical Forest Soil	MTRAEEYRHLAEKVRARAAREESPVLRAEWENLAEGYVRLAEQTEASEQLDIFYDPIVGILEGKIKRTIQ*
Ga0066388_1029850442	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRALAAGEESPILRAEWENLAEGYVCLAEQTDASEQLDTFYDPIIGLLEGKIKRTIQQ*
Ga0066388_1030803052	3300005332	Tropical Forest Soil	MTRAEEYRHLAEKVRARAGREESPVLRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGDLQVNIKRTTQ*
Ga0066388_1076814841	3300005332	Tropical Forest Soil	MTRAEEYRHLANKVRARADSEESPILRAEWEILAEGYVRLAEQTEASEQLDTLYDPIIGILEGRIKRTIQ*
Ga0066388_1085970341	3300005332	Tropical Forest Soil	MTRAEEYRHLAKKVRARAAREESPVIRAEWENLAESYIRLAEQTEASDQPTVYDPIVGTLPARIKRTIQ*
Ga0066905_1003378483	3300005713	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAEGYVRLAEQTGASEQLDTFYDPIIGLLEGKIKRTIQ*
Ga0066905_1011979551	3300005713	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQ*
Ga0066903_1001242296	3300005764	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDILYDPIVGILEGKTKRIIQ*
Ga0066903_1012137383	3300005764	Tropical Forest Soil	MTRAEEYWHLAEKVRAQASREESPVLRAEWENLAEGYVCLAEQTDASEQLDAFYDPIVGIFEGKIKRTIQ*
Ga0066903_1012533454	3300005764	Tropical Forest Soil	MTRAEEYKHLANKVRARADGEESPSLRAEWENLAEGYVRLAEQTEASEQLDTLYAPIIGILEGIKRTIQ*
Ga0066903_1029357832	3300005764	Tropical Forest Soil	MTRAEEYRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKIKRTIQ*
Ga0066903_1076719252	3300005764	Tropical Forest Soil	MTRAEEYRHLAEKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ*
Ga0074057_120061071	3300006605	Soil	MTRAEEYRHLANEVLARAFEEKSPILRAEWETLAESYVRLAEQTDETEQLDLIDDPILGLLGARRH*
Ga0075425_1002639413	3300006854	Populus Rhizosphere	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNVQVNIKRIQ*
Ga0105249_104257002	3300009553	Switchgrass Rhizosphere	MTRAEEYRHLANEVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH*
Ga0126380_103022271	3300010043	Tropical Forest Soil	MTRAEEYRHLAESVRARASREDSPLLRAEWENLAESYIRLAEQTEENDPLDPIHDPILGILGGKRH*
Ga0126380_105610992	3300010043	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDTLYDPILGILEGKIKRTIQ*
Ga0126380_105709362	3300010043	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEHLDTFYDPIIGVVEGKIKRTIQ*
Ga0126380_110856392	3300010043	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTGASEQLDTFYDPIIGLLEGKIKRTIQQ*
Ga0126384_116826182	3300010046	Tropical Forest Soil	MTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGLLEGKVKRTIQ*
Ga0126382_102795283	3300010047	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTGASEQLDTFYDPIIGL
Ga0126382_108378261	3300010047	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWESLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQ*
Ga0126370_122108631	3300010358	Tropical Forest Soil	MTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPLQVKINRTIQ*
Ga0126376_100413576	3300010359	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDILYDPIVGLLEGKVKRTIQ*
Ga0126376_107134572	3300010359	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESLILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKTKRTIQ*
Ga0126376_117149952	3300010359	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAAGYVCLAEQTDASEQLDTFYDPIIGLLEGKIKRTIQQ
Ga0126372_108721171	3300010360	Tropical Forest Soil	MTRAEEYKHLANKVRARADSEESLTLRAEWEILAESYVRLAEQTEASEQLDTLYDPIIGILEGIKRTIQ*
Ga0126377_110174302	3300010362	Tropical Forest Soil	MTRAEEYRHLAESVRARAPREDSPLLKAEWENLAESYIRLAEQPEENDPLDPIHDPILGILGGKRH*
Ga0126377_120961062	3300010362	Tropical Forest Soil	MTRAQEYRHLARKVRARAAGEESPILRAEWENLAEGYVRLAEQTEASEQLDTFYDPIIGLLVGKT
Ga0126377_121336311	3300010362	Tropical Forest Soil	MTRAEEYRHLANKVRVRADAEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIIGILEGIKRTIQ*
Ga0126381_1032991001	3300010376	Tropical Forest Soil	EYRHLAEKVRAQASREESPVLRAEWENLAEGYVRLAEQAEASEQLDILYDPIVGILEGKTKRIIQ*
Ga0126383_103504064	3300010398	Tropical Forest Soil	YRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEQTEASEQLDIFYDPIVGILEGKIKRTIQ*
Ga0124844_12046662	3300010868	Tropical Forest Soil	MTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPL*
Ga0157299_101183501	3300012899	Soil	MTRAEEYRQLANKVRARAFEEESPILRAEWETLADSYVWLAEQTDEIEQLDVDDPILGLLGALGIKGEANRRE
Ga0157288_101684751	3300012901	Soil	MTRAEEYRQLANKVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH*
Ga0126375_101980132	3300012948	Tropical Forest Soil	MTRAEEYRHLANKVRARAAGEESPILRAEWENLAESYVRLAEQTEASEQLDTFYDPIIGLLEGKIKRTIQ*
Ga0126375_103474011	3300012948	Tropical Forest Soil	MTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPI
Ga0164298_109079992	3300012955	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTEASDQLDLVYDPIVGNLQVNIKRIQ*
Ga0164303_103847591	3300012957	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQRDLVYDPIVGNLQVNIKRIQ*
Ga0164301_111837951	3300012960	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNLQVNIKR
Ga0126369_100526541	3300012971	Tropical Forest Soil	KRSPMTRAEEYRHLAEKVRARAACEESPILRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGVLRVKINRTIQ*
Ga0126369_101232601	3300012971	Tropical Forest Soil	MTRAEEYRHLAEKVRAQASREESPVLRAEWENLAEGYVCLAEQTDASEQLDAFYDPIVGI
Ga0126369_124409401	3300012971	Tropical Forest Soil	VRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKVKRTIQ*
Ga0126369_131209611	3300012971	Tropical Forest Soil	HHYIVVSHNRSPMTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPLQVKINRTIQ*
Ga0164307_102253502	3300012987	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTEASDQLDLAYDPIVGNLQVNIKRIQ*
Ga0164306_114199661	3300012988	Soil	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTEASDQLDLVYDPIVGN
Ga0157374_102454502	3300013296	Miscanthus Rhizosphere	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLIYDPIVGNLQVNIKRIQ*
Ga0132258_105613925	3300015371	Arabidopsis Rhizosphere	DHLVIEVAPMTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLGASRH*
Ga0132258_111131414	3300015371	Arabidopsis Rhizosphere	MTRAEEYRQLANTVRARAFEEESPILRAEWETLADSYVWLAEQTDEAEQLYADDPILGLLGASRH*
Ga0132258_118074322	3300015371	Arabidopsis Rhizosphere	MTRAEEYRHLAKKVRARAAGEESPTVRAGWENLAESYVCLAEQAEASDQLDPLYDPIVGDFQVNIKRTIQ*
Ga0132255_1015241753	3300015374	Arabidopsis Rhizosphere	MTRAEEYRQLANKVRARAFEEESPILRAEWETLADSYVWLAEQTDEAEQLYADDPILGLLGASRH*
Ga0132255_1016984133	3300015374	Arabidopsis Rhizosphere	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLGARRH*
Ga0182040_105066291	3300016387	Soil	AEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTVQ
Ga0187823_103110761	3300017993	Freshwater Sediment	MKRAEEYRHLAETVRFRARQEESPNLRAEWEHLAETYDRLAEQTDSNEPLDPASDPVFRILGGSRH
Ga0184604_100416512	3300018000	Groundwater Sediment	MTRAEEYRHLAKKVHARAAREESPILRAEGENLAEGYVRLTEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0184608_100215125	3300018028	Groundwater Sediment	MTRAEEYRYLATKIRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGSRH
Ga0184620_103285702	3300018051	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRLAEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0184617_10456962	3300018066	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0184611_11062621	3300018067	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAKGYVRLAEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0173482_105745702	3300019361	Soil	MTRAEEYRHLANEVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH
Ga0193705_10425742	3300019869	Soil	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAKGYVRLAEQTVASEQLDTLYDPIVGLRVKINRTIQ
Ga0210381_102164512	3300021078	Groundwater Sediment	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRLAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0193719_100562791	3300021344	Soil	MTRAEEYRYLATKVRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGVAALNSK
Ga0126371_102368564	3300021560	Tropical Forest Soil	VVSHNRSPMTRAEEYKHLAEKVRARARREESPVLRAEWENLAEAYVRLAEQTEASEQLDTIDGPIVGPLQVKINRTIQ
Ga0126371_108618752	3300021560	Tropical Forest Soil	MTRAEEYRHLAEKVRAQAAREESPVLRAEWENLAEGYVRLAEETEASEQLDTLYDPIVGLLEGKIKRTIQ
Ga0222624_13786511	3300021951	Groundwater Sediment	IGHKRSLMTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0222625_10954572	3300022195	Groundwater Sediment	MTRAEEYRYLATKVRARASDEESPIAKAGWENLASSYIRLAEQSEESDPIDVFYDPIIGILGGSRH
Ga0224452_11849791	3300022534	Groundwater Sediment	KVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0222623_102025532	3300022694	Groundwater Sediment	MTRAEEYRYLATKVRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGSRH
Ga0207659_115446521	3300025926	Miscanthus Rhizosphere	MTRAEEYRHLANKVRVQAAMEESPVLRAEWENLAASYVCLAEQTESSDQLDLVYDPIVGNVQVNIKRIQ
Ga0208637_10003722	3300027401	Soil	MTRAEEYRHLANEVRARAFEEKSPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH
Ga0307293_101857562	3300028711	Soil	AKKVRARAAREESPILRAEWENLAEGYARLAEQTEASEQLDTLYDPIVGLRVKINRTIQ
Ga0307280_100728863	3300028768	Soil	GAHNSAIGHKRSLMTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRLAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0307323_101934641	3300028787	Soil	MTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQTVASEQLDTLDDPIVGLRVKINRTIQ
Ga0307302_103525312	3300028814	Soil	MTRAEEYRHLATKVHARASNEESPIVKAEWENLAETYIRLAQQSEENGQIDVLYDPIIGILGGSRH
Ga0308203_10201391	3300030829	Soil	RSQMTRAEEYRHLAKKVRARAAREESPILRAEWENLAKGYVRLAEQTVASEQLDTLYDPIVGLQVKINRTIQ
Ga0308202_10120131	3300030902	Soil	SRGQIMTRAEEYRYLATKVRVRASHEESPIMKAEWENLAKSYIRLAEQSEESDHIDVFYDPIIGILGGSRH
Ga0308206_10808181	3300030903	Soil	ASRGRIMTRAEEYRYLATKVRARASDEESPIAKAGWENLASSYIRLAEQSEESDPIDVFYDPIIGILGGSRH
Ga0308189_101754221	3300031058	Soil	SLMTRADEYRHLQKRSAPELPGKKARLRAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGLRVKINRTIQ
Ga0308189_101955611	3300031058	Soil	GHKRSLMTRAEEYRHLAKKVRARAAREESPILRAEWENLAEGYVRRAEQPVASEQLDTLDDPIVGLRVKINRTIQ
Ga0307497_105948471	3300031226	Soil	AEEYRHLANKVRARAFEEESPILRAEWETLAESYVRLAEQTDETEQLDLIDDPVLGLLGASRH
Ga0170824_1236990671	3300031231	Forest Soil	PMTRAEEYRHLAKTVRARAAREESPILSAEWENLAEGYVRLAEQTEASEQLDTLYDPIVGLRVKINRTIQ
Ga0170824_1289578302	3300031231	Forest Soil	MTRADEYRHLAKRVRTRAAGEESPILRAEWENLAEGYVRLAEQTVASEQLDPSMNPIVGLRVKINRTIQ
Ga0310892_101748992	3300031858	Soil	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLEASRH
Ga0306919_102388013	3300031879	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ
Ga0306923_106797631	3300031910	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGI
Ga0306921_102238761	3300031912	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGK
Ga0310901_103405402	3300031940	Soil	HLVIEVAPMTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETEQLDLIDDPILGLLGASRH
Ga0310885_104318381	3300031943	Soil	MTRAEEYRHLANKVRTRAFEEESPILRAEWEILAKSYVRLAEQSDETDQLDLIDDPILGLLEASRH
Ga0306926_105846232	3300031954	Soil	MTRAEEYRHLAGKVRARASREGSPVLRAEWENLAEGCVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ
Ga0307471_1004145962	3300032180	Hardwood Forest Soil	MTRAEEYRQLANTVRARAFEEESPIRRAEWETLAESYVWLAEQTDEAEQLDADDPIAGLLGASRH
Ga0306920_1012168832	3300032261	Soil	MTRAEEYRHFAGKVRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ
Ga0310914_116969471	3300033289	Soil	VRARASREGSPVLRAEWENLAEGYVRLAEQTEASEQLDTLNDPIVGILEGKIKRTIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087151

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences