NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F087110

Metagenome / Metatranscriptome Family F087110

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F087110
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 47 residues
Representative Sequence PGERVDATLQILDPGKNAEGFEIDVCLRGADHRIACANDVAPQAKR
Number of Associated Samples 93
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 5.05 %
% of genes near scaffold ends (potentially truncated) 85.45 %
% of genes from short scaffolds (< 2000 bps) 84.55 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (79.091 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(18.182 % of family members)
Environment Ontology (ENVO) Unclassified
(33.636 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.273 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.05%    β-sheet: 10.81%    Coil/Unstructured: 85.14%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF01207Dus 89.09
PF02954HTH_8 3.64
PF02142MGS 3.64
PF11906DUF3426 0.91
PF02844GARS_N 0.91
PF07690MFS_1 0.91
PF13719zinc_ribbon_5 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0042tRNA-dihydrouridine synthaseTranslation, ribosomal structure and biogenesis [J] 89.09
COG0151Phosphoribosylamine-glycine ligaseNucleotide transport and metabolism [F] 0.91


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.09 %
All OrganismsrootAll Organisms20.91 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_101365606Not Available601Open in IMG/M
3300004080|Ga0062385_10318734All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria899Open in IMG/M
3300004080|Ga0062385_11300230Not Available501Open in IMG/M
3300004092|Ga0062389_101192565Not Available947Open in IMG/M
3300004092|Ga0062389_101467667Not Available866Open in IMG/M
3300004092|Ga0062389_101519871Not Available853Open in IMG/M
3300004092|Ga0062389_103653597Not Available577Open in IMG/M
3300004092|Ga0062389_104490637Not Available525Open in IMG/M
3300005938|Ga0066795_10058314Not Available1140Open in IMG/M
3300005952|Ga0080026_10198800Not Available593Open in IMG/M
3300006638|Ga0075522_10402331Not Available647Open in IMG/M
3300009500|Ga0116229_10789589Not Available771Open in IMG/M
3300009500|Ga0116229_11495932Not Available534Open in IMG/M
3300009701|Ga0116228_11000254Not Available556Open in IMG/M
3300009709|Ga0116227_10698080Not Available766Open in IMG/M
3300009787|Ga0116226_11098292Not Available759Open in IMG/M
3300010396|Ga0134126_10466706All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1459Open in IMG/M
3300014201|Ga0181537_10650022Not Available718Open in IMG/M
3300014492|Ga0182013_10531323Not Available608Open in IMG/M
3300014501|Ga0182024_11973872Not Available646Open in IMG/M
3300014654|Ga0181525_10076768All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1863Open in IMG/M
3300014654|Ga0181525_10811401Not Available528Open in IMG/M
3300014654|Ga0181525_10849237Not Available517Open in IMG/M
3300014838|Ga0182030_10757762Not Available897Open in IMG/M
3300015052|Ga0137411_1272849All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1592Open in IMG/M
3300015167|Ga0167661_1059058Not Available715Open in IMG/M
3300017948|Ga0187847_10161799Not Available1223Open in IMG/M
3300018044|Ga0187890_10598374Not Available621Open in IMG/M
3300019787|Ga0182031_1546878All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium1360Open in IMG/M
3300020034|Ga0193753_10097491All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1472Open in IMG/M
3300020170|Ga0179594_10320376Not Available588Open in IMG/M
3300020580|Ga0210403_11264297Not Available565Open in IMG/M
3300020581|Ga0210399_10595368Not Available915Open in IMG/M
3300021086|Ga0179596_10437075Not Available662Open in IMG/M
3300021180|Ga0210396_10504744Not Available1058Open in IMG/M
3300021180|Ga0210396_10520071Not Available1040Open in IMG/M
3300021180|Ga0210396_11322200Not Available599Open in IMG/M
3300021181|Ga0210388_10091903All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2588Open in IMG/M
3300021181|Ga0210388_10108978All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2378Open in IMG/M
3300021404|Ga0210389_11443093Not Available524Open in IMG/M
3300021406|Ga0210386_10659970Not Available902Open in IMG/M
3300021420|Ga0210394_10328978Not Available1342Open in IMG/M
3300021433|Ga0210391_11163692Not Available598Open in IMG/M
3300021475|Ga0210392_10267788Not Available1216Open in IMG/M
3300021479|Ga0210410_10865032Not Available790Open in IMG/M
3300022557|Ga0212123_10233485Not Available1334Open in IMG/M
3300026490|Ga0257153_1086571All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria627Open in IMG/M
3300026515|Ga0257158_1114713Not Available538Open in IMG/M
3300027002|Ga0209110_1031329All Organisms → cellular organisms → Bacteria → Proteobacteria638Open in IMG/M
3300027031|Ga0208986_1016556Not Available745Open in IMG/M
3300027117|Ga0209732_1037015Not Available843Open in IMG/M
3300027528|Ga0208985_1013527All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1556Open in IMG/M
3300027568|Ga0208042_1172044Not Available539Open in IMG/M
3300027701|Ga0209447_10170023Not Available598Open in IMG/M
3300027807|Ga0209208_10407928Not Available658Open in IMG/M
3300027817|Ga0209112_10279230All Organisms → cellular organisms → Bacteria → Proteobacteria588Open in IMG/M
3300027860|Ga0209611_10139985Not Available1549Open in IMG/M
3300027860|Ga0209611_10182153Not Available1300Open in IMG/M
3300027860|Ga0209611_10804765Not Available500Open in IMG/M
3300027889|Ga0209380_10099103All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1683Open in IMG/M
3300027895|Ga0209624_10622692Not Available715Open in IMG/M
3300027908|Ga0209006_10666824Not Available854Open in IMG/M
3300028138|Ga0247684_1012842Not Available1310Open in IMG/M
3300028748|Ga0302156_10511077Not Available511Open in IMG/M
3300028813|Ga0302157_10275743Not Available929Open in IMG/M
3300029907|Ga0311329_10787143Not Available608Open in IMG/M
3300029911|Ga0311361_11085611Not Available657Open in IMG/M
3300029919|Ga0302141_1166954Not Available596Open in IMG/M
3300029945|Ga0311330_11255199Not Available534Open in IMG/M
3300029951|Ga0311371_11972755All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria gonorrhoeae621Open in IMG/M
3300029954|Ga0311331_10279787All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1799Open in IMG/M
3300029999|Ga0311339_10036352All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans6901Open in IMG/M
3300030020|Ga0311344_10014904All Organisms → cellular organisms → Bacteria10992Open in IMG/M
3300030020|Ga0311344_10204399All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2025Open in IMG/M
3300030503|Ga0311370_11352095All Organisms → cellular organisms → Bacteria → Proteobacteria757Open in IMG/M
3300030503|Ga0311370_12383971Not Available513Open in IMG/M
3300030519|Ga0302193_10560912Not Available556Open in IMG/M
3300030520|Ga0311372_10655741All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1480Open in IMG/M
3300030524|Ga0311357_10627752Not Available985Open in IMG/M
3300030580|Ga0311355_10616849Not Available1021Open in IMG/M
3300030862|Ga0265753_1001272All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2111Open in IMG/M
3300031003|Ga0074003_10004192Not Available1007Open in IMG/M
3300031015|Ga0138298_1365449Not Available522Open in IMG/M
3300031090|Ga0265760_10269064Not Available595Open in IMG/M
3300031231|Ga0170824_106509136Not Available520Open in IMG/M
3300031234|Ga0302325_10559391All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1702Open in IMG/M
3300031236|Ga0302324_101655203Not Available822Open in IMG/M
3300031446|Ga0170820_11674446Not Available529Open in IMG/M
3300031474|Ga0170818_107412709Not Available641Open in IMG/M
3300031708|Ga0310686_119775152Not Available877Open in IMG/M
3300031715|Ga0307476_10132008All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1784Open in IMG/M
3300031720|Ga0307469_11295433Not Available692Open in IMG/M
3300032205|Ga0307472_101374460Not Available684Open in IMG/M
3300032783|Ga0335079_10602204Not Available1159Open in IMG/M
3300034091|Ga0326724_0431053Not Available691Open in IMG/M
3300034125|Ga0370484_0056860Not Available977Open in IMG/M
3300034163|Ga0370515_0334303Not Available640Open in IMG/M
3300034199|Ga0370514_093002Not Available768Open in IMG/M
3300034282|Ga0370492_0365729Not Available585Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.18%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog9.09%
Host-AssociatedHost-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated9.09%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.18%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa8.18%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil7.27%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.27%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog3.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.64%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.64%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.64%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil3.64%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog2.73%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.82%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.91%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.91%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.91%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.91%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.91%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.91%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.91%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.91%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006638Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-AEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009500Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009701Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300009709Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MGHost-AssociatedOpen in IMG/M
3300009787Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014492Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014838Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015167Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11b, vegetated hydrological feature)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020034Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300027002Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027031Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027117Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027528Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027568Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027701Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027807Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)Host-AssociatedOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027860Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)Host-AssociatedOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300028748Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2EnvironmentalOpen in IMG/M
3300028813Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029919Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2EnvironmentalOpen in IMG/M
3300029945I_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029954I_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030020II_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030519Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031003Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-3A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031015Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300034091Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00NEnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M
3300034199Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14EnvironmentalOpen in IMG/M
3300034282Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10136560613300002245Forest SoilATLEILDPGKNAEGFEIDVCLRGADRRVACANDVAPQATQ*
Ga0062385_1031873413300004080Bog Forest SoilLLAPGERADATLEILDPGKNAEGFEIDVCLRGVDQKIACQSDVAPQIKR*
Ga0062385_1130023023300004080Bog Forest SoilMDILDPGKSAEGFEIDVCLRGADRKVACANDAAATATATR*
Ga0062389_10119256523300004092Bog Forest SoilGERVDTTLDILDPGNSAEGFEIDVCLRSADRRVACANDKAPAQAKR*
Ga0062389_10146766713300004092Bog Forest SoilGERVDATLAILDPGKNAEGFEVDVCLRGVDRKISCASDAAPQAGR*
Ga0062389_10151987123300004092Bog Forest SoilVDATLDILDPGNDAEGFEIDVCLRGVDKKVRCAADAAAQAKP*
Ga0062389_10365359723300004092Bog Forest SoilAKLLSPGERIDATMDILDPGNSAEGFEIDVCMRSADKKISCANDSAAAHKR*
Ga0062389_10449063713300004092Bog Forest SoilKVDAVLNILDPGKDAEGFEIDVCLPGGDKKIVCANDTAPSQARQ*
Ga0066795_1005831423300005938SoilDILDPGNDAEGFEIDVCLRGIDQKIRCAADAAAQAKP*
Ga0080026_1019880013300005952Permafrost SoilPGKSAEGFEIDVCLRGSDRKISCANDATPAQTKR*
Ga0075522_1040233113300006638Arctic Peat SoilLDPGKSAEGFEIDVCLRGADRKVSCANDKAPAVPTR*
Ga0099827_1160045623300009090Vadose Zone SoilTLNILDPGKDAEGFEIDVCIRSAEKKIVCAGDAGAASAGRQSK*
Ga0116229_1078958913300009500Host-AssociatedMGRPIVRMLAPGERADATLDIVDPGKDAEGFEIDVCVRAADQKISCAGDVATAAKQPASR
Ga0116229_1149593213300009500Host-AssociatedKATTGLLAPGERADATINILDPGKDAEGFEIDVCLRAGDQRITCANDLAVHAK*
Ga0116228_1100025423300009701Host-AssociatedAEYLGKPTLHLLSPGERADATIDILDPGKNAEGFEIDVCVRGPVHVLHCQGDAGR*
Ga0116227_1069808023300009709Host-AssociatedGETVNAVLNIVDPGKDAEGFEIDVCLRGADKKIICANDLSRAKS*
Ga0116226_1109829213300009787Host-AssociatedESVDAILDILDPGKEAEGFEIDVCLRHTDKKIVCANDVAAAQARQ*
Ga0134126_1046670613300010396Terrestrial SoilTLNILDPGKTAEGFEIDVCLRGAERRIACANDAAPQPKP*
Ga0137413_1183373523300012924Vadose Zone SoilVDATLNILDPGKDAEGFEIDVCIRGAEKKTVCAGDAAAAAAGRQSK*
Ga0137419_1113650013300012925Vadose Zone SoilLGKAPAGMLAPGERVDATLNILDPGKDAEGFEIDVCVRSAEKKIVCAGDAAAAAAGRQSK
Ga0181537_1065002223300014201BogGKPTARLLAPGEQVDATLQILDPGKNAEGFEIDVCMRGADRRVACAADVAAAQSKK*
Ga0182013_1053132323300014492BogTLNILDPGKNAEGFEIDVCLRAADGRVACANDAAAQTTPAAQPHR*
Ga0182024_1197387213300014501PermafrostRADATVEIPDPGKDAEGFELDVCLRSAEGQINCAGDSAPHPP*
Ga0181525_1007676813300014654BogAAARRLAPGERAEATLDIVDPGKDAEGFEIDVCIRRAGGNILCTGDAAPPVT*
Ga0181525_1081140113300014654BogLDPGKNAEGFEIDVCLRGADRKVVCASDASPRAK*
Ga0181525_1084923723300014654BogERADATLDILDPGKDAEGFEVDVCLRGIDQKISCAADAATQTKQ*
Ga0182030_1075776223300014838BogLAPGERADATLDIVDPGRDAEGFEIDVCIRGVEQRIACAGDVAPQAKQPRGGS*
Ga0137411_127284913300015052Vadose Zone SoilDATLQILDPGKNAEGFEIDVCLRSADHRITCANDVAPQAKR*
Ga0167661_105905823300015167Glacier Forefield SoilTAKLLAPGERADATLEILDPGKNAEGFEIDVCLRGVDQRVFCANDIAPQAER*
Ga0137418_1009970443300015241Vadose Zone SoilATLNILDPGKDAEGFEIDVCIRGAEKKIVCAGDAAAAAAGRQSK*
Ga0137412_1002489963300015242Vadose Zone SoilERVDATLNILDPGKDAEGFEIDVCIRGAEKKTVCAGDAAAAAAGRQSK*
Ga0137409_1142630913300015245Vadose Zone SoilDATLNILDPGKDAEGFEIDVCIRGAEKKIVCAGDAAAAAAGRQSK*
Ga0187847_1016179913300017948PeatlandIVDPGKDAEGFEIDVCLRNTEQKILCAGDVAPQAKQ
Ga0187890_1059837413300018044PeatlandDATLDIVDPGKDAEGFEIDVCIRGVEQRISCAGDVSAQAKQPGGGS
Ga0182031_154687833300019787BogLNILDPGKNAEGFEIDVCLRAADGRVACANDAAAQTTPAAQPHR
Ga0193753_1009749143300020034SoilLDPGKSAEGFEIDVCLRGADKKISCANDAAPAQAKR
Ga0179594_1032037623300020170Vadose Zone SoilAEYLGKAPARMLAPGERVDATLDILDPGKDAEGFEIDVCIRNAEKRIFCAGDAAAAAAARQPK
Ga0210407_1084850023300020579SoilGKAAARMLAPGERVDATLNILDPGKDAEGFEIDVCIRGAEKKIVCAGDAGAAPAGRQSK
Ga0210403_1126429713300020580SoilTLEILDPGKSAEGFEIDVCLRGVDHRISCANDVAAQTKR
Ga0210399_1059536823300020581SoilRADATLQILDPGKNAEGFEIDVCLRAADQRIACAGDAAPQSKQ
Ga0179596_1043707523300021086Vadose Zone SoilRLLTPGERVDATLDILDPGKNAEGFEIDVCLRGVEKKISCANDVAPQTRR
Ga0210396_1050474423300021180SoilKPTAKLLAPGERADATLDILDPGKSAEGFEIDVCLRGADRRVSCANDKAPAQAKR
Ga0210396_1052007123300021180SoilAEYMGKPIVRMLAPGERADATLDIVDPGKDAEGFEIDVCVRGADQKISCAGDVATQAKR
Ga0210396_1132220023300021180SoilDATVEIPDPGKNAEGFELDVCLRSAEGKINCAGDNAPHPP
Ga0210388_1009190343300021181SoilDFEPSEYLGKPTAKLLAPGERTDATLDILDPGKSAEGFEIDVCLRAADRRVSCANDKAPAQAKR
Ga0210388_1010897833300021181SoilMGKPIVRMLAPGERADATLDIVDPGKDAEGFEIDVCVRGADQKISCAGDVATQAKR
Ga0210393_1066330523300021401SoilEFEPAEYLGNAPARMLAPGERVDATLNILDPGKDAEGFEIDVCIRSAEKKIVCAGDTGTAAAGRQSK
Ga0210389_1144309313300021404SoilDPGKNAEGFEIDVCLRGADRRVSCANDKAPAQAKR
Ga0210386_1065997023300021406SoilATLEILDPGKNAEGFEIDVCLRGADRRVACANDVAPQAAP
Ga0210394_1032897813300021420SoilERADVILEILDPGKNAEGFEVDVCMRGVDRRISCANDVAPQTKQ
Ga0210391_1116369223300021433SoilTAKLLAPGERADATLDILDPGKSAEGFEIDVCLRGADRKVSCANDKAPAQAKR
Ga0210392_1026778813300021475SoilEYLGKPTAKLLAPGERTDATLDILDPGKSAEGFEIDVCLRAADRRVSCANDKAPAQAKR
Ga0210410_1086503223300021479SoilTAKLLAPGERADATLDILDPGKSAEGFEIDVCLRGADRRVSCANDKAPAQAKR
Ga0212123_1023348513300022557Iron-Sulfur Acid SpringLAPGERVDATLEILDPGKNAEGFEIDVCLRGVDKKISCANDVAAQAAR
Ga0257153_108657123300026490SoilRLLAPGERVDATLQILDPGKNAEGFEIDVCLHGADHRITCANDVAPQAKR
Ga0257158_111471323300026515SoilPGERVDATLQILDPGKNAEGFEIDVCLRGADHRIACANDVAPQAKR
Ga0209110_103132913300027002Forest SoilQRFATPLTKLLAPGERVDATLDILDPGKSAEGFEIDVCLRSADRRVSCANDKAPAQAKR
Ga0208986_101655613300027031Forest SoilRADATLDILDPGKSAEGFEIDVCLRGADRRVSCANDKAPAQAKR
Ga0209732_103701523300027117Forest SoilERADATLDILDPGKNAEGFEIDVCLRGADRKVSCANDKAPALPKR
Ga0208985_101352713300027528Forest SoilPGERADATLDILDPGKSAEGFEIDVCLRGADRKVSCANDKAPAQAKR
Ga0208042_117204413300027568Peatlands SoilILDPGNDAEGFEIDVCLRGVDKKVRCAADAAAQAKP
Ga0209447_1017002323300027701Bog Forest SoilLAILDPGKNAEGFEIDVCLRGADQRVACANDVAPQTKQ
Ga0209208_1040792813300027807Host-AssociatedLGKPTARLLAPGERADATISILDPGKDAEGFEIDVCLRAADQSITCANDVAARAK
Ga0209112_1027923023300027817Forest SoilVDATLDILDPGKSAEGFEIDVCLRSADRRVSCANDKAPAQAKR
Ga0209611_1013998543300027860Host-AssociatedERADASLGLLDPGKNAEGFEIDVCLRADQRLACANDAASQAKR
Ga0209611_1014013833300027860Host-AssociatedAPGQRVDATINMQDPGKDAEGFEIDVCLRTADHSLNCADDAAAHAK
Ga0209611_1018215313300027860Host-AssociatedDILDPGKTAEGFEIDVCVRGAGHALHCQGDVTSSP
Ga0209611_1080476513300027860Host-AssociatedNAVLNIVDPGKDAEGFEIDVCLRGADKKIICANDLSRAKS
Ga0209380_1009910343300027889SoilAILDPGKNAEGFEIDVCLRGADQRVACANDAAPQSKQ
Ga0209624_1062269213300027895Forest SoilDPGKNAEGFEIDVCLRSADRRVACANDKAPSDKAPAQAKR
Ga0209006_1066682413300027908Forest SoilTARLLAPGERADAMLEILDPGKNAEGFEVDVCMRGVDHRISCANDVAPQTKQ
Ga0247684_101284213300028138SoilLQILDPGKNAEGFEIDVCLRGAEQKISCAADAAPQSK
Ga0302156_1051107723300028748BogPGETVDAILNILDPGKEAEGFEIDVCLRGNHKKIICANDVAQRTKA
Ga0302157_1027574313300028813BogPEYLGRPTTGLLAPGERADATINILDPGKDAEGFEIDVCLRTADHRIACANDLAARAK
Ga0311329_1078714313300029907BogPTARLLAPGERVDATLEILDPGKNAEGFEIDVCLRGADQRIACQSDASPQPKQ
Ga0311361_1108561113300029911BogGKPVARMLAPGERADATLDIVDPGKDAEGFEIDVCVRGVEQKISCAGDVAAHAKQPHAGS
Ga0302141_116695423300029919BogGERADATLEIQDPGKSAEGFEFDVCLRSPEQRVLCANDQWDRGR
Ga0311330_1125519913300029945BogAPGERADATINILDPGKDAEGFEIDVCLRTADRRIKCANDLAARAQ
Ga0311371_1197275523300029951PalsaTLDILDPGKSAEGFEIDVCLRGADKKISCANDVAPVQTKR
Ga0311331_1027978743300029954BogVDAVLDILDPGKDAEGFEIDVCVPGTGKKITCADDAAPQAK
Ga0311339_1003635213300029999PalsaGERADATLDIQDPGKDAEGFEIDVCLRADQTISCAADAATQADAPRAKP
Ga0311344_1001490413300030020BogADATVDIQDPGKSAEGFELDVCLRNADGRVRCAGDNAPRP
Ga0311344_1020439943300030020BogEPSDYLGKSTARMLAPGERVDAILDIVDPGKDAEGFEIDVCVRGADKRVQCAGDAANAAAAQAKP
Ga0311370_1135209523300030503PalsaTLDILDPGKSAEGFEIDVCLRSADKKISCANDAAPAQTKR
Ga0311370_1238397123300030503PalsaRGDATLDIQDPGKDAEGFEIDVCLRADQTISCAADAATQADAPRAKP
Ga0302193_1056091213300030519BogRADATVDIQDPGKSAEGFELDVCLRNADGRVRCAGDNAPRP
Ga0311372_1065574113300030520PalsaPGERADATLEILDPGKNAEGFEIDVCLRGVDQKIACQGDVAPQTKR
Ga0311357_1062775213300030524PalsaDYLGRPPSRMLSPGERVDATMDIVDPGKDAEGFEIDICLRGANAKIMCVGDNATGAPAAADAAAQTK
Ga0311355_1061684913300030580PalsaPNVHLMTPGERGDATLDIQDPGKDAEGFEIDVCLRADQTISCAADAATQADAPRAKP
Ga0265753_100127213300030862SoilPSEYLGKPTAKLLAPGERADATLDILDPGKSAEGFEIDVCLRAADRRVSCANDKAPAQAK
Ga0074003_1000419213300031003SoilPVEYLGKIPGRMLAHGERVDATLDIVDPGKDAEGFEIDVCIRRVDKTIACAADVASQAK
Ga0138298_136544923300031015SoilVAILDPGKNAEGFEIDVCLRGVDGKISCANDVAPQAGR
Ga0265760_1026906423300031090SoilGERADATLDILDPGKSAEGFEIDVCLRGADRKVSCANDKAPALPTR
Ga0170824_10650913623300031231Forest SoilLDILDPGKSAEGFEIDVCLRAPDRRVACANDKAPAQAKR
Ga0302325_1055939113300031234PalsaRADATLDILDPGKDAEGFEIDVCLRSIDQKISCAGDAATQVKQ
Ga0302324_10165520323300031236PalsaGEQVDAILNILDPGKDAEGFEIDVCLRGGDKRIVCASDAASP
Ga0170820_1167444623300031446Forest SoilGERVDATLQILDPGKNAEGFEIDVCLRGAELKISCAADAAPQSK
Ga0170818_10741270913300031474Forest SoilLGKPTARLLAPGERADATLEILDPGKNAEGFEIDVCVRGAEQRIACANDVAPQSKR
Ga0170818_11375828413300031474Forest SoilPARMLAPGERVDATLNILDPGKDAEGFEIDVCIRGADKKIVCAGDAGAAAAAAGRQSK
Ga0310686_11977515213300031708SoilRMLAPGERADATLDIVDPGKDAEGFEIDVCVRGADQKISCAGDVATQAKR
Ga0307476_1013200843300031715Hardwood Forest SoilLDPGKNAEGFEIDVCLRGVDRKISCANDVAPQAGR
Ga0307469_1129543323300031720Hardwood Forest SoilPAEYLGKPTARLLAPGEQVDATLEILDPGKNAEGFEIDVCMRGVDRRVGCAADVAPQGLR
Ga0307475_1095504113300031754Hardwood Forest SoilVDATLNILDPGKDAEGFEIDVCIRSAEKQIVCAGDAGAAAAGRQSK
Ga0307472_10137446023300032205Hardwood Forest SoilLGKAPARMLAPGERVDATLDILDPGKDAQGFEIDVCIRSAEKKIMCAGDAAAAARQSK
Ga0335079_1060220423300032783SoilILDPGKDAEGFEIDVCLRGIDQKISCAGDAATQTKP
Ga0326724_0431053_3_1163300034091Peat SoilEILDPGKNAEGFEIDVCLRGADRRVACQSDVAAQAQR
Ga0370484_0056860_768_9173300034125Untreated Peat SoilMLAPGARVDATLDLMDPGNDAEGFEIDVCLRGIDKKIRCAADAAAQAKP
Ga0370515_0334303_503_6403300034163Untreated Peat SoilGERVDATLEILDPGKNAEGFEIDVCLRGADRRISCANDVTTQTKR
Ga0370514_093002_615_7673300034199Untreated Peat SoilLLAPGERADATLDILDPGKNAEGFEIDVCLRGADRKVSCANDKAPAQAKR
Ga0370492_0365729_427_5853300034282Untreated Peat SoilTARLLAPGEQADATLQILDPGKNAEGFEIDVCMRGADRRVACASDIAPQGGK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.