Metagenome / Metatranscriptome Family F087082

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087082
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	79 residues
Representative Sequence	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETIERATELSRDESFEEMDIVVTYDDPFCELVLPLRRKREAGQEPLREAA
Number of Associated Samples	70
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	53.64 %
% of genes near scaffold ends (potentially truncated)	28.18 %
% of genes from short scaffolds (< 2000 bps)	78.18 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.182 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (58.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (37.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.04% β-sheet: 22.22% Coil/Unstructured: 65.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00072	Response_reg	10.00
PF02518	HATPase_c	7.27
PF13306	LRR_5	3.64
PF14307	Glyco_tran_WbsX	1.82
PF08448	PAS_4	1.82
PF13546	DDE_5	1.82
PF02784	Orn_Arg_deC_N	0.91
PF13750	Big_3_3	0.91
PF13607	Succ_CoA_lig	0.91
PF00512	HisKA	0.91
PF16216	GxGYxYP_N	0.91
PF16561	AMPK1_CBM	0.91
PF07963	N_methyl	0.91
PF04545	Sigma70_r4	0.91
PF08447	PAS_3	0.91
PF13492	GAF_3	0.91
PF01814	Hemerythrin	0.91
PF01590	GAF	0.91
PF01694	Rhomboid	0.91
PF04349	MdoG	0.91
PF02954	HTH_8	0.91
PF00255	GSHPx	0.91
PF13369	Transglut_core2	0.91
PF00365	PFK	0.91
PF13493	DUF4118	0.91
PF02545	Maf	0.91
PF02261	Asp_decarbox	0.91
PF13426	PAS_9	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0019	Diaminopimelate decarboxylase	Amino acid transport and metabolism [E]	0.91
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.91
COG0386	Thioredoxin/glutathione peroxidase BtuE, reduces lipid peroxides	Defense mechanisms [V]	0.91
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0853	Aspartate 1-decarboxylase	Coenzyme transport and metabolism [H]	0.91
COG1166	Arginine decarboxylase (spermidine biosynthesis)	Amino acid transport and metabolism [E]	0.91
COG3131	Periplasmic glucan biosynthesis protein OpgG	Cell wall/membrane/envelope biogenesis [M]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
All Organisms	root	All Organisms	41.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
cellular organisms	root	All Organisms → cellular organisms	41.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	15.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	14.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.82 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.64 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.91 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.91 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.91 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.91 %
Puniceicoccales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.91 %
Puniceicoccaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Coraliomargarita	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Coraliomargarita	0.91 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Coraliomargarita sinensis	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Coraliomargarita → Coraliomargarita sinensis	0.91 %
unclassified Chthoniobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.64 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Chthoniobacter sp. 12-60-6	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6	0.91 %
Coraliomargarita sinensis	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Coraliomargarita → Coraliomargarita sinensis	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100564385	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1727	Open in IMG/M
3300001213\|JGIcombinedJ13530_101469376	Not Available	527	Open in IMG/M
3300001213\|JGIcombinedJ13530_104080923	Not Available	601	Open in IMG/M
3300001213\|JGIcombinedJ13530_105906190	Not Available	677	Open in IMG/M
3300001213\|JGIcombinedJ13530_108143835	Not Available	502	Open in IMG/M
3300001213\|JGIcombinedJ13530_108422099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Puniceicoccales → Puniceicoccaceae → Coraliomargarita → Coraliomargarita sinensis	542	Open in IMG/M
3300001213\|JGIcombinedJ13530_109380910	Not Available	543	Open in IMG/M
3300003852\|Ga0031655_10063871	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300003852\|Ga0031655_10314290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6	584	Open in IMG/M
3300006055\|Ga0097691_1101302	Not Available	843	Open in IMG/M
3300006642\|Ga0075521_10071313	Not Available	1554	Open in IMG/M
3300006642\|Ga0075521_10490181	Not Available	602	Open in IMG/M
3300006642\|Ga0075521_10634828	Not Available	526	Open in IMG/M
3300006795\|Ga0075520_1060871	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300009167\|Ga0113563_11871764	Not Available	715	Open in IMG/M
3300009175\|Ga0073936_10329072	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300009548\|Ga0116107_1034083	Not Available	1858	Open in IMG/M
3300009548\|Ga0116107_1106019	Not Available	829	Open in IMG/M
3300009615\|Ga0116103_1075076	Not Available	898	Open in IMG/M
3300009630\|Ga0116114_1143751	Not Available	612	Open in IMG/M
3300009631\|Ga0116115_1122259	Not Available	663	Open in IMG/M
3300009632\|Ga0116102_1197758	Not Available	541	Open in IMG/M
3300009644\|Ga0116121_1066022	Not Available	1132	Open in IMG/M
3300009644\|Ga0116121_1119599	Not Available	828	Open in IMG/M
3300009644\|Ga0116121_1247867	Not Available	570	Open in IMG/M
3300009868\|Ga0130016_10000609	All Organisms → cellular organisms → Bacteria	77567	Open in IMG/M
3300010341\|Ga0074045_10137948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1664	Open in IMG/M
3300010341\|Ga0074045_10642969	Not Available	675	Open in IMG/M
3300010379\|Ga0136449_101570118	Not Available	1002	Open in IMG/M
3300014155\|Ga0181524_10321166	Not Available	698	Open in IMG/M
3300014156\|Ga0181518_10029497	All Organisms → cellular organisms → Bacteria	3572	Open in IMG/M
3300014156\|Ga0181518_10098374	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300014158\|Ga0181521_10114541	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1620	Open in IMG/M
3300014159\|Ga0181530_10210552	Not Available	1063	Open in IMG/M
3300014162\|Ga0181538_10005952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	10724	Open in IMG/M
3300014162\|Ga0181538_10193553	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300014490\|Ga0182010_10325999	Not Available	828	Open in IMG/M
3300014490\|Ga0182010_10339195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	812	Open in IMG/M
3300014491\|Ga0182014_10000789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	43008	Open in IMG/M
3300014491\|Ga0182014_10006137	All Organisms → cellular organisms → Bacteria	13079	Open in IMG/M
3300014491\|Ga0182014_10077158	All Organisms → cellular organisms → Bacteria	2110	Open in IMG/M
3300014491\|Ga0182014_10249473	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	932	Open in IMG/M
3300014494\|Ga0182017_10664057	Not Available	633	Open in IMG/M
3300014498\|Ga0182019_10031990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2952	Open in IMG/M
3300014498\|Ga0182019_10266500	Not Available	1132	Open in IMG/M
3300014502\|Ga0182021_10516120	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300014502\|Ga0182021_12532048	Not Available	617	Open in IMG/M
3300014502\|Ga0182021_13557231	Not Available	518	Open in IMG/M
3300014839\|Ga0182027_10510181	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300014839\|Ga0182027_11141522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	788	Open in IMG/M
3300014875\|Ga0180083_1047067	Not Available	881	Open in IMG/M
3300016750\|Ga0181505_10031220	Not Available	557	Open in IMG/M
3300017929\|Ga0187849_1382140	Not Available	516	Open in IMG/M
3300017931\|Ga0187877_1024116	All Organisms → cellular organisms → Bacteria	3196	Open in IMG/M
3300017935\|Ga0187848_10146186	Not Available	1044	Open in IMG/M
3300017946\|Ga0187879_10269253	Not Available	948	Open in IMG/M
3300017946\|Ga0187879_10813436	Not Available	522	Open in IMG/M
3300017955\|Ga0187817_10830922	Not Available	590	Open in IMG/M
3300018008\|Ga0187888_1217327	Not Available	753	Open in IMG/M
3300018014\|Ga0187860_1127507	All Organisms → cellular organisms → Bacteria → PVC group	1117	Open in IMG/M
3300018016\|Ga0187880_1218254	Not Available	856	Open in IMG/M
3300018019\|Ga0187874_10235173	Not Available	754	Open in IMG/M
3300018020\|Ga0187861_10158205	Not Available	1040	Open in IMG/M
3300018026\|Ga0187857_10348931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	671	Open in IMG/M
3300018033\|Ga0187867_10683682	Not Available	559	Open in IMG/M
3300018035\|Ga0187875_10015191	All Organisms → cellular organisms → Bacteria	4755	Open in IMG/M
3300018035\|Ga0187875_10070506	All Organisms → cellular organisms → Bacteria	2013	Open in IMG/M
3300018042\|Ga0187871_10794686	Not Available	528	Open in IMG/M
3300018042\|Ga0187871_10845982	Not Available	511	Open in IMG/M
3300018043\|Ga0187887_10670017	Not Available	613	Open in IMG/M
3300018047\|Ga0187859_10051243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2188	Open in IMG/M
3300018047\|Ga0187859_10235459	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300018086\|Ga0187769_10155170	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1678	Open in IMG/M
3300022555\|Ga0212088_10081190	All Organisms → cellular organisms → Bacteria	3128	Open in IMG/M
3300023088\|Ga0224555_1061101	Not Available	1321	Open in IMG/M
3300023090\|Ga0224558_1025039	Not Available	2884	Open in IMG/M
3300023090\|Ga0224558_1028280	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2628	Open in IMG/M
3300023090\|Ga0224558_1080205	Not Available	1199	Open in IMG/M
3300023091\|Ga0224559_1005906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	5732	Open in IMG/M
3300023091\|Ga0224559_1235999	Not Available	622	Open in IMG/M
3300025473\|Ga0208190_1037182	Not Available	1064	Open in IMG/M
3300025579\|Ga0207927_1107494	Not Available	625	Open in IMG/M
3300025579\|Ga0207927_1137038	Not Available	521	Open in IMG/M
3300025878\|Ga0209584_10018963	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2317	Open in IMG/M
3300025878\|Ga0209584_10181128	Not Available	800	Open in IMG/M
3300027896\|Ga0209777_10096914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2524	Open in IMG/M
3300027896\|Ga0209777_10151032	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300027896\|Ga0209777_10445008	Not Available	966	Open in IMG/M
3300027899\|Ga0209668_10218536	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300027905\|Ga0209415_10432923	Not Available	1044	Open in IMG/M
3300027905\|Ga0209415_10806751	Not Available	653	Open in IMG/M
3300031344\|Ga0265316_10425193	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300031344\|Ga0265316_10434263	Not Available	943	Open in IMG/M
3300031524\|Ga0302320_12126023	Not Available	521	Open in IMG/M
3300031902\|Ga0302322_103482716	Not Available	539	Open in IMG/M
3300032143\|Ga0315292_11331973	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	587	Open in IMG/M
3300032805\|Ga0335078_10010966	All Organisms → cellular organisms → Bacteria → Proteobacteria	13423	Open in IMG/M
3300032892\|Ga0335081_10444285	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1652	Open in IMG/M
3300032892\|Ga0335081_12509117	Not Available	532	Open in IMG/M
3300032897\|Ga0335071_10169076	All Organisms → cellular organisms → Bacteria	2138	Open in IMG/M
3300033402\|Ga0326728_10000178	All Organisms → cellular organisms → Bacteria	259076	Open in IMG/M
3300033402\|Ga0326728_10260358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1638	Open in IMG/M
3300033405\|Ga0326727_10168304	Not Available	2513	Open in IMG/M
3300033416\|Ga0316622_101932450	Not Available	686	Open in IMG/M
3300033483\|Ga0316629_10672807	Not Available	780	Open in IMG/M
3300033485\|Ga0316626_11921542	Not Available	536	Open in IMG/M
3300033755\|Ga0371489_0000255	All Organisms → cellular organisms → Bacteria	107670	Open in IMG/M
3300033755\|Ga0371489_0029003	All Organisms → cellular organisms → Bacteria	4159	Open in IMG/M
3300033755\|Ga0371489_0270889	Not Available	834	Open in IMG/M
3300034125\|Ga0370484_0005611	Not Available	2523	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.27%
Host-Associated	Host-Associated	1.82%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	50.91%
Terrestrial	Environmental → Terrestrial	46.36%
Plants	Host-Associated → Plants	1.82%
Wastewater	Engineered → Wastewater	0.91%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	43.64%
Soil	Environmental → Terrestrial → Soil	33.64%
Peat	Environmental → Terrestrial → Peat	12.73%
Marine	Environmental → Aquatic → Marine	6.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.91%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	35.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	22.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	10.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.36%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.45%
Lake	Environmental → Aquatic → Freshwater → Lake	2.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	24.55%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	12.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.73%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	10.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.00%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.18%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	6.36%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	5.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	18.18%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	9.09%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	9.09%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	8.18%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.36%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	6.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.36%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	5.45%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	5.45%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	5.45%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.64%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.73%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	1.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.91%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009175	Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014875	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_1_16_10D	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025473	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1005643852	3300001213	Wetland	MRVLLRHAGIGLYYAGRKHWVSNQTNAKDLGTIERATELSREESFEEMEVYVTYDDPSCDLVLPLSHKKAEAGELRHAVA*
JGIcombinedJ13530_1014693762	3300001213	Wetland	VLRHAGIGLYYAGRKHWVGNPAAALDLETIEQATELSRDEAFEEMEIEVTYDDPNCELVLPLRRRKVPTNENVGAAA*
JGIcombinedJ13530_1040809232	3300001213	Wetland	MRVVLRHAEIDRYYARRKHWVSNPGSALGLKTIKRATIVSRDESFGEMEIVLTYDDPSCELVLPLRCERKTDDQARRDAA*
JGIcombinedJ13530_1059061901	3300001213	Wetland	VRVLLRHAGIGLYYAGRRHWVGDAGSALDLGTIERAAELSRAESFEEMDVVVTYDDPACELVLPLRRKTSTTAGPQQAAA*
JGIcombinedJ13530_1081438352	3300001213	Wetland	MNVLLRHSGIGLYYAGRKHWVGNPDAALHLDSIERATELSADESFSEMEIVVTYDNPECELVIPLGSKKHSTGGARNAAG*
JGIcombinedJ13530_1084220991	3300001213	Wetland	MRVHLRHAHIGLYYAGRKHWVSNPDSALDLESIEHATEVSRGEDFDRMQIIASFEDPTCEVVFDLTSPRLLSR*
JGIcombinedJ13530_1093809102	3300001213	Wetland	MRVHLRHAHVGLFYAGRKHWVSNPDSALDLHTIERATELSRDEDFERMEIVAFFDDPFCELVFPLAHRPVKLSNACR*
Ga0031655_100638712	3300003852	Freshwater Lake Sediment	HAGIGLYYAGRKRWVSDPDSARDLSTIERAAELSRDESFEEMDVVVTYDDPSCELVFPLRRKKVAEAEPIRATA*
Ga0031655_103142901	3300003852	Freshwater Lake Sediment	MNVVIRHSRIGLYYAGRKHWVGNPGSALHLESIERAAELSGDESFSEMEIVVTYDDPVCELVLPLGRKRKSIDRTLRA
Ga0097691_11013021	3300006055	Arctic Peat Soil	MRVVLRHSGIGLYYAGRKHWVSDQGAALDLQSIERAMELSREESFVAMEIMVWYDDPTCELVLPIGRKKSGGEESLRMAA*
Ga0075521_100713133	3300006642	Arctic Peat Soil	VVLKHAEIGLYYVGRKHWVGNSDSALDLQTIERATELSHDESFEEMDIVVTYEDPDCELVLPLRRKRGADDESLRDAA*
Ga0075521_104901811	3300006642	Arctic Peat Soil	MRVLLRHAVIGLYYAGRKHWVGDPGSALDLGTVEQATELSREEEFGDMDILVTYDDPSCELVLPIRRSRHAADEPLSLAA*
Ga0075521_106348281	3300006642	Arctic Peat Soil	YYAGRKHWVGNPTAAMDLGTIERAAELSREESFEEMEVFVTYDDSVCELILPLRRKTAATAEPVRAGT*
Ga0075520_10608711	3300006795	Arctic Peat Soil	LGLYYAGHKHWVGDPDSALDLATIERATELSRDESFGEMDIVVTYDDPVCELVLPLRRSEEADDESLRDAV*
Ga0113563_118717641	3300009167	Freshwater Wetlands	MRVLLRHAAIGLYYAGRKHWVGNPGSALDLGTIERATELSREESFGDMDVIVTYDDGCSDLILPLRRSKEAADKSMPHAA*
Ga0073936_103290722	3300009175	Freshwater Lake Hypolimnion	MLRHAGIGLYFAGRKHWVGNPGAALDLESIEQATELGRDELFEEMDIVVTYDDPICELILPFRRRGLVAEESVRNAA*
Ga0116107_10340832	3300009548	Peatland	MLRHAGIDLYYAGRKHWVGNPDSALDLETIERATELSREESFEEMDIVVTSGDPARELVLPLRRQC*
Ga0116107_11060191	3300009548	Peatland	MLRHAGIDLYYAGRKHWAGNPDSALDLESIERATELSRDEPFGEMDIVVTHDDLCCELVFPLRSKREATDEQQDLAED*
Ga0116103_10750762	3300009615	Peatland	MHVMLRHAGIDLYYAGRKHWAGNPDSALDLESIERATELSRDEPFGEMDIVVTHDDLCCELVFPLRSKREATDEQQDLAED*
Ga0116114_11437511	3300009630	Peatland	IGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARRIARADDTLRTAA*
Ga0116115_11222592	3300009631	Peatland	QVMLRHAGIDLYYAGRKHWVGNPDSALDLETIERATELSREESFEEMDIVVTSGDPARELVLPLRRQC*
Ga0116102_11977581	3300009632	Peatland	MRVVLRHAEMGLYYAGHKHWVGDPDSALDLASIERATELSRDESFGVMDIVVTYDDPVCELVLPLRRSREA
Ga0116121_10660222	3300009644	Peatland	LKRFGHGVKTPFAHFFDQGHILLADMSVLLRHALVGLYYAGRKHWVGDPGAALDLGSIEHAAERSREESFEDMDIVVTHDDPSCELVLPVRRKRPAEAEPLRATA*
Ga0116121_11195992	3300009644	Peatland	VNTPFAHFFDQCHILPADMRVLLRHAGMGLYYAGRKHWVGDPDSALDLGSIEQAAERSREEFFEEMDIVVTHDDPTCELVLPVRRKRPADGEPLRAAA*
Ga0116121_12478671	3300009644	Peatland	MRVVLRHSGIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARRIARADDTLRTAA*
Ga0130016_1000060938	3300009868	Wastewater	LRHAHVGLFYAGRKHWVSNPDGALDLRTIERAAELSRDEDFERMEIVAFFDDPICELVFPLAPRSAKPRFPRHAHA*
Ga0074045_101379481	3300010341	Bog Forest Soil	MMVMIKLARMSAMKVVLRHSGIGLYYAGRKHWVGNSDSALDLETIERAAELSREEAFEEMEIFVTYDDPFCEMVLPLARKITRVDDTLRAAA*
Ga0074045_106429691	3300010341	Bog Forest Soil	MRVVLRHAEIGLYYAGRKHWVGNPDSALDLETIGCATELSRDEPFEEMQIVVTCDDSARELVLPLGRKKTATDEPLRHAA*
Ga0136449_1015701182	3300010379	Peatlands Soil	MKVLLRHAGIGLYYAGHKHWVGNPEAALDLGTVERATELSREEAFEEMDMVVTYDDPTCELVLPLRRKQAAPAEPMRAVA*
Ga0181524_103211661	3300014155	Bog	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETIERATELSRDESFEEMDIVVTYDDPFCELVLPLRRKREAGQEPLREAA*
Ga0181518_100294974	3300014156	Bog	MRVVLRHAEMGLYYAGHKHWVGDPDSALDLASIERATELSRDESFGVMDIVVTYDDPVCELVLPLRRSREADDESRRDAA*
Ga0181518_100983741	3300014156	Bog	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETIERATELSRDESFEEMDIVVTYDDPFCELVLPLRRKREAGQEPLR
Ga0181521_101145411	3300014158	Bog	MRVVLRHAEMGLYYAGHKHWVGDPDSALDLASIERATELSRDESFGVMDIVVTYDDPVCELVLPL
Ga0181530_102105522	3300014159	Bog	YAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARRIARADDTLRTAA*
Ga0181538_100059526	3300014162	Bog	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETIERATELSRDESFEEMDIVMTYDDPFCELVLPLRRKREAGQEPLREAA*
Ga0181538_101935533	3300014162	Bog	DLLLCEMRVVLRHAGMGLYYAGRKHWVGNSDSALDLETIERATELSRDESFEVMDIVVTYDDPGCELVLPLRRKSEADDESLREAA*
Ga0182010_103259992	3300014490	Fen	MRVVLKHAELGLYYAGHKHWVGDPDSALDLATIERATELSRDESFGEMDIVVTYDDPVCELVLPLRRSEEADDESLRDAV*
Ga0182010_103391952	3300014490	Fen	MRVVLRHAGIGLYYAGRKHWVGDAGSALDLETIERAAELSREEDFEEMEIYVVYDDPFCELVLPLGRKRASVDDTLRPAA*
Ga0182014_1000078915	3300014491	Bog	LRHSGIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARKIARADDTLRTAA*
Ga0182014_100061378	3300014491	Bog	MRVVLRHAGIGLYYAGRKHWVSNPAAALDLETIERATELSRDESFREMEIHVTYDDPVCDLVLPLARKRAPAAETLRAAA*
Ga0182014_100771582	3300014491	Bog	MKVLLRHPGIGFYYAGREHWVGSPGAALDLETIERAAEVSREEAFEEMDIYLAYDDSTCELVLPIRRKTQAAEEPLREAA*
Ga0182014_102494733	3300014491	Bog	MRVVLRHASIGLYYAGRKHWVGNPAAAKDLCTIEQAFEASRDETFGDLDIVATYDDPSCELVLPARHEKGGSGEPL
Ga0182017_106640571	3300014494	Fen	FLRHAEMGLYYAGHKHWVGHPDAALDLGSIEQATELSREESFEEMDIVVTYDDPTCELVLPVTRKRPAEAEPLRTAA*
Ga0182019_100319906	3300014498	Fen	MRVVLKHAELGLYYAGHKHWVGDPDSALDLATIERATELSRDESFEEMDIVVTYDDPVCELVLPLRRSEEADDESLRDAV*
Ga0182019_102665001	3300014498	Fen	VNTPFAHFFDDCDILVVAMRVLLRHAQMGLYYAGHKHWVGHPDAALDVGSLEQATELSREESFEEMDIVVTYDDPTCELVLPVTRKRPAEAEPLRTAA*
Ga0182021_105161201	3300014502	Fen	VNTPFAHFFDDCDILVVAMRVLLRHAQLGLYYAGHKHWVGHPDAALDVGSLEQAAELSREESFEEMDILVTYDDPTCELVLPVTRKRPAEAEPLRTAA*
Ga0182021_125320481	3300014502	Fen	MRVLLRHAVIGLYYAGRKHWVGNPGSALDLGAIERATELSREEEFGDMDLMVTYDDPSCELVLPIRRSRKAADEPLRVAA*
Ga0182021_135572312	3300014502	Fen	MGLYYAGRKHWVSNPDSALDLETIERATELSRAESFEEMQILVTYDDPYREMVLPLRRKKEADEEPLRDAA*
Ga0182027_105101812	3300014839	Fen	MRVHLRHAQLGLYYAGRKHWVSNPESALDLETIEHATELSRYEDFERMEIVASFDDPVCETVFPLAGKARTPDETSPVHD*
Ga0182027_111415222	3300014839	Fen	MRVVLRHAGIGLYYAGRKHWVGSCDSALDLETIKRATKLSLDEAFEEMEIAVIYDDPRRELVFPVPRKTATADESLRDAA*
Ga0180083_10470671	3300014875	Soil	MDGARVLLRHGGLGLYYAGRKHWVGSPDSAMDLGTIERATELSRYESFEEMEIFVAYDDPDCELVLPLRRKWPATDNTPPAAA*
Ga0181505_100312201	3300016750	Peatland	MRVVLRHAGIDLYYAGHKHWVSKPGFALDLETIERATVLSREEDFGDMDIVVTYDEPSCELVLPLRRSREADDESRRDAA
Ga0187849_13821402	3300017929	Peatland	MRVVLRHSGIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARRIARADDTLRTAA
Ga0187877_10241161	3300017931	Peatland	MLRHAGIDLYYAGRKHWVGNPDSALDLETIERATELSREESFEEMDIVVTSGDPARELVLPLRRQC
Ga0187848_101461861	3300017935	Peatland	MRVVLRHAEMGLYYAGHKHWVGDPDSALDLASIERATELSRDESFGVMDIVVTYDDPVCELVLPLRRSREADDESRRDAA
Ga0187879_102692531	3300017946	Peatland	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLASIERATELSRDESFGVKDIVVTYDDPVCELVLPLRRSREADDESRRDAA
Ga0187879_108134362	3300017946	Peatland	VLRHAFIGLYYAGRKHWVGNPGAALDLGSIEQATELSRDESFEDMDIVVTYDEPTCELILPVRRKRSANAEPLREAA
Ga0187817_108309221	3300017955	Freshwater Sediment	SSRAKISVMQEHGMRVVLRHAGIGLYYAGRKHWVGNPDSALDLETIERATELSRDESFGEMDIVVTYDEPCCELVLPLRRKREADDEALRDAA
Ga0187888_12173272	3300018008	Peatland	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETIERATELSRDESFEEMDIVMTYDDPFCELVLPLRRKREAGQEPLREAA
Ga0187860_11275072	3300018014	Peatland	VCGGVGRKHWVGHPGAALDLGSVEQAAALSRDESFEERDLVVTYDDPACELILPLRHKTPAAAEPLRRAA
Ga0187880_12182542	3300018016	Peatland	RHSGIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARRIARADDTLRTAA
Ga0187874_102351731	3300018019	Peatland	MQERCMRVVLRHAGIGLYYAGRKHWVGNQDSALDLATIERATELSSDESFGEMDIVVTYDDSRGELVLPLRRNGDAIDESRRDAA
Ga0187861_101582052	3300018020	Peatland	MLRHAGIDLYYAGRKHWAGNPDSALDLESIERATELSRDEPFGEMDIVVTHDDLCCELVFPLRSKREATDEQQDLAED
Ga0187857_103489312	3300018026	Peatland	MRVVLRHSGIGLYYAGRKHWVGDAGSALDLETIERAAELSREEAFEEMEIFVAYDDPFCELVLPVGRK
Ga0187867_106836821	3300018033	Peatland	MGLYYAGRKHWVGDPDSALDLGSIEQAAERSREEFFEEMDIVVTHDDPTCELVLPVRRKRPADAEPLRAAA
Ga0187875_100151913	3300018035	Peatland	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETIERATELSRDESFEEMDIVVTYDDPFCELVLPLRRKREAGQEPLREAA
Ga0187875_100705061	3300018035	Peatland	RKHWVGDSNSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARRIARADDTLRTAA
Ga0187871_107946861	3300018042	Peatland	MRVVLRHAGIDLYYAGHKHWVGNPGSALDLETIERATVLSREEAFGDMDIVVSYDDPSCELVLPLRRSREADDESRRDAA
Ga0187871_108459821	3300018042	Peatland	MRVVLRHAFIGLYYAGRKHWVGNPGAALDLGSIEQATELSRDESFEDMDIVVTYDEPTCELILPVRRKRSANAEPL
Ga0187887_106700172	3300018043	Peatland	MRVVLRHAGIGLYYAGRKHWVGDPDSALDLETNERATELSRDESFEEMDIVVTYDDPFCELVLPLRRKREAGQEPLREAA
Ga0187859_100512433	3300018047	Peatland	MRVVLRHAEMGLYYAGHKHWVGDPDSALDLASIERATELSRDESFGVMDIVVTYDDPVCELVLPLRRSREADDESRRDAACMPCRWCPPRS
Ga0187859_102354591	3300018047	Peatland	MRVVLRHAGIDLYYAGHKHWVGNPGSALDLETIERATELSRDESFEEMDIVMTYDDPFCELVLPLRRKREAGQEPLREAA
Ga0187769_101551703	3300018086	Tropical Peatland	MQVVLRHAGMGLYYAGHKHWVGNPDSALDLETIERATELSRDESFEEMDIVVTSGDPCCDLVLPLRRKKAADGESLGDAV
Ga0212088_100811901	3300022555	Freshwater Lake Hypolimnion	MLRHAGIGLYFAGRKHWVGNPGAALDLESIEQATELGRDELFEEMDIVVTYDDPICELILPFRRRGLVAEESVRNAA
Ga0224555_10611012	3300023088	Soil	MRVVLRHSGIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARKIARADDTLRTAA
Ga0224558_10250392	3300023090	Soil	MRVLLRHPAIGLYYAGRKHWVGNRGAALVLETIERAAELSRDEAFEEMDVIVTHDDSTCELVLPIRRKKAAADEPARPAA
Ga0224558_10282802	3300023090	Soil	MKVLLRHPGIGFYYAGREHWVGSPGAALDLETIERAAEVSREEAFEEMDIYLAYDDSTCELVLPIRRKTQAAEEPLREAA
Ga0224558_10802051	3300023090	Soil	MRVVLRHAGIGLYYAGRKHWVSNPAAALDLETIERATELSRDESFREMEIHVTYDDPVCDLVLPLARKRAPAAETLRAAA
Ga0224559_10059062	3300023091	Soil	MRIVLRHSGIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARKIARADDTLRTAA
Ga0224559_12359992	3300023091	Soil	MRVVLRHAGIGLYYAGHKHWVGNADSALDLETIERATELSRDEPFGEMNIVVTYDDPSCALVLPLRRKREAKDESLRDAA
Ga0208190_10371822	3300025473	Peatland	LKRFGHGVKTPFAHFFDQGHILLADMSVLLRHALVGLYYAGRKHWVGDPGAALDLGSIEHAAERSREESFEDMDIVVTHDDPSCELVLPVRRKRPAEAEPLRATA
Ga0207927_11074942	3300025579	Arctic Peat Soil	MRVVLRHSGIGLYYAGRKHWVGDAGSALDLETIERAAELSREEDFEEMEIYVVYDDPFCELVLPLGRKRAS
Ga0207927_11370381	3300025579	Arctic Peat Soil	MRVVLRQTGIGLFYAGRKHWVGNPDSALDLETIERATELSRDESFEEMEIRVTYDDSDCELVLPLRRKRGADDESLRDAA
Ga0209584_100189633	3300025878	Arctic Peat Soil	MRVVLRHSGIGLYYAGRKHWVGDSDSAMDLETIERAAELSREEAFEEMEIFVTYDDPFCEMVLPLARKIARADDTLRTAAKMPSAAC
Ga0209584_101811281	3300025878	Arctic Peat Soil	MRVVLKHAEIGLYYVGRKHWVGNSDSALDLQTIERATELSHDESFEEMDIVVTYEDPDCELVLPLRRKRGADDESLRDAA
Ga0209777_100969142	3300027896	Freshwater Lake Sediment	MNVVIRHSRIGLYYAGRKHWVGNPGSALHLESIERAAELSGDESFSEMEIVVTYDDPVCELVLPLGRKRKSIDRTLRAAV
Ga0209777_101510321	3300027896	Freshwater Lake Sediment	MRVSLRHAGIGLYYAGRKRWVSDPDSARDLSTIERAAELSRDESFEEMDVVVTYDDPSCELVFPLRRKKVAEAEPIRATA
Ga0209777_104450081	3300027896	Freshwater Lake Sediment	MRVVLRHAGIGLYYAGRKHWVGDAGSALDLETIERAAELSREEDFEEMEIFVAYDDPFCELVLPLGRKRAGVGGALRPTS
Ga0209668_102185361	3300027899	Freshwater Lake Sediment	MKVLLRHAGIGLYYAGRKHWVGDQAAAKDLGTIEQATELSWEESFQEMEVFVIYDDPACELVLPLRRKKAEAAEP
Ga0209415_104329232	3300027905	Peatlands Soil	MTIPLTGMRVVLRHAGIGLYYAGRRHWVGNPDSALDLETAERATELSHDECFEEMQILLTYDDPARELVLPLRRKGKAHDEPLRVAA
Ga0209415_108067512	3300027905	Peatlands Soil	MKVLLRHAGIGLYYAGHKHWVGNPEAALDLGTVERATELSREEAFEEMDMVVTYDDPTCELVLPLRRKQAAPAEPMRAVA
Ga0265316_104251931	3300031344	Rhizosphere	MRVLLRHAGIGLYYAGRKHWVGDAGSALDLATMERAAELSRDEAFGGMDIVVTYDDPSCELVLPLRRKKEAAEEPMREAA
Ga0265316_104342631	3300031344	Rhizosphere	MRVVLRHAGIGLYYAGRKHWVGSCDSALDLETIKRATKLSLDEAFEEMEIAVIYDAPRRELVFPVPRKTATADESLRDAA
Ga0302320_121260231	3300031524	Bog	GIGLYYAGRKHWVGDSDSALDLETIERATELSREEAFEEMEIFVTFDDPFCEMVLPLARKIARADDTLRTAA
Ga0302322_1034827162	3300031902	Fen	VVLRHAGIGLYYAGRKHWVGNPGSALDLETIERATELSRDESFEEMDIVVTYDDPYRDLVLPLRRKREAEEKSLRAAA
Ga0315292_113319732	3300032143	Sediment	MRVVLRHAAIGLYYAGRKHWVGSPASALDLETVERATELSRDESFEDMAIVVTYDDPACELVLPLARKTRATREPARAAA
Ga0335078_100109665	3300032805	Soil	MRVILRHPGIGLYYAGRKHWVGDAGSALDLETIERATELSREEAFEEMEIYVTYDDPCCELVLPLARQQPKEKAAEKDVCPAV
Ga0335081_104442852	3300032892	Soil	MRVMLRHPGIGLYYAGRKHWVGNASSALDLESVEHAKELSRDEAFEEMEIIVTYDDPSCEMVLPLARRPRMEAAAEEPQRAAG
Ga0335081_125091171	3300032892	Soil	YMRVLLRHAGIGLYYAGPKHWVGDPGLALDVGSIERAAEVSRDESFEEMDVLVTYDDPACELVLPLKRKVARRSEPLRVAA
Ga0335071_101690763	3300032897	Soil	VKVVLRHPSIGLYYAGRKHWVGSLASAADLRTIEQAMESSRQESFEEMDVVVTDEESSCELVFPLRRHKRDEAEPLRAAA
Ga0326728_1000017883	3300033402	Peat Soil	MQVVLRHAGLDLYYAGRKHWAGNPDSALDLETIERATELSREEPFGEMDIVVTSDDPSRELVLPLRRKRAADAEPLSTAA
Ga0326728_102603585	3300033402	Peat Soil	MRVLLRHAGIGLYYAGRKHWVGDADSALDLATIERATELSREESFEEMDVVVTYDDDPSCELVLPLRRKEVAEPGPLRAPA
Ga0326727_101683042	3300033405	Peat Soil	LRHAGLDLYYAGRKHWAGNPDSALDLETIERATELSRGEPFGEMDIVVTSDDPSRELVLPLRRKRAADAEPPSTAA
Ga0316622_1019324501	3300033416	Soil	MRVLLRHAAIGLYYAGRKHWVGNPGSALDLGTIECATELSREESFGDMDVMVTYDDPCCELVLPLRRTKEAADKSLPHAA
Ga0316629_106728071	3300033483	Soil	MDGARVLLRHGGLGLYYAGRKHWVGSPDSAMDLGTIERATELSRHESFEEMEIFVAYDDPICELVLPLKRKWPATDKNPPAAA
Ga0316626_119215421	3300033485	Soil	MRVLLRHAAIGLYYAGRKHWVGNPGSALDLGTIERATELSREESFGDMDVMVTYDDGCSDLILPLRRSK
Ga0371489_0000255_792_1037	3300033755	Peat Soil	MHVVLRHAGIALYYAGRKHWAGNPDSALDLETIERATELSRDEPFGEMDIVVTHDDLCCELVLPLRGKREATDEQQDLAED
Ga0371489_0029003_2997_3239	3300033755	Peat Soil	MRVLLRHAGIGLYYVGRKHWVGDPGSATDLGTIERAAEVSRAESFEEMDVVVTYDDDACELVLPLKRNKEPEAATLSAGG
Ga0371489_0270889_3_209	3300033755	Peat Soil	MQVVLRHAGIDLYYAGRKHWAGNPDSALDLGTVERATELSRDESFEEMDIVVTSGDPTRELVLPLKRKR
Ga0370484_0005611_330_593	3300034125	Untreated Peat Soil	MRVVLRHSGIGLYYAGRKHWVGDSDSAMDLETIERAAELSREEAFEEMEIFVTYDDPFCEMVLPLARKIARADDTLRTAAKMPRAAC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087082

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences