Metagenome / Metatranscriptome Family F087076

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087076
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	44 residues
Representative Sequence	MTTLQAMCLGAMLAWTPSLVVLALLLREAPLDELERDPS
Number of Associated Samples	92
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	36.36 %
% of genes near scaffold ends (potentially truncated)	63.64 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (40.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.81% β-sheet: 0.00% Coil/Unstructured: 61.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00816	Histone_HNS	6.36
PF04679	DNA_ligase_A_C	2.73
PF01527	HTH_Tnp_1	0.91
PF13437	HlyD_3	0.91
PF01757	Acyl_transf_3	0.91
PF01272	GreA_GreB	0.91
PF00313	CSD	0.91
PF13400	Tad	0.91
PF00656	Peptidase_C14	0.91
PF11154	DUF2934	0.91
PF01609	DDE_Tnp_1	0.91
PF00440	TetR_N	0.91
PF08546	ApbA_C	0.91
PF01979	Amidohydro_1	0.91
PF05239	PRC	0.91
PF04392	ABC_sub_bind	0.91
PF13458	Peripla_BP_6	0.91
PF00891	Methyltransf_2	0.91
PF00106	adh_short	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2916	DNA-binding protein H-NS	Transcription [K]	6.36
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.73
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.91
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.91
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.91
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.91
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.91
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.91
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.18 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	4.55 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	27.27 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	24.55 %
Muriiphilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus	4.55 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Muriiphilus fusiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	4.55 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.82 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.82 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.91 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Muriiphilus fusiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	4.55 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.82 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1.82 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.91 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918007\|ConsensusfromContig48039	Not Available	691	Open in IMG/M
3300001305\|C688J14111_10199952	Not Available	620	Open in IMG/M
3300001686\|C688J18823_10278486	Not Available	1104	Open in IMG/M
3300002568\|C688J35102_119348488	Not Available	678	Open in IMG/M
3300002568\|C688J35102_120899698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2133	Open in IMG/M
3300005560\|Ga0066670_10586388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	680	Open in IMG/M
3300005578\|Ga0068854_100745638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	849	Open in IMG/M
3300005614\|Ga0068856_100932128	Not Available	887	Open in IMG/M
3300005995\|Ga0066790_10393295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	592	Open in IMG/M
3300006046\|Ga0066652_100702221	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300006047\|Ga0075024_100131587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1125	Open in IMG/M
3300006052\|Ga0075029_100417519	Not Available	874	Open in IMG/M
3300006642\|Ga0075521_10599086	Not Available	542	Open in IMG/M
3300006755\|Ga0079222_10982982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	722	Open in IMG/M
3300006797\|Ga0066659_10759532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	798	Open in IMG/M
3300007255\|Ga0099791_10658394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	514	Open in IMG/M
3300007258\|Ga0099793_10003549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5425	Open in IMG/M
3300007265\|Ga0099794_10753029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300007788\|Ga0099795_10226032	Not Available	798	Open in IMG/M
3300009137\|Ga0066709_100695965	Not Available	1461	Open in IMG/M
3300009633\|Ga0116129_1036934	Not Available	1580	Open in IMG/M
3300010039\|Ga0126309_10052586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1953	Open in IMG/M
3300010040\|Ga0126308_10228526	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300010043\|Ga0126380_12030874	Not Available	527	Open in IMG/M
3300010154\|Ga0127503_10312577	Not Available	645	Open in IMG/M
3300010159\|Ga0099796_10193178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	822	Open in IMG/M
3300010856\|Ga0126358_1065230	Not Available	534	Open in IMG/M
3300011120\|Ga0150983_15506069	Not Available	1106	Open in IMG/M
3300012096\|Ga0137389_10049129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3178	Open in IMG/M
3300012096\|Ga0137389_11216078	Not Available	645	Open in IMG/M
3300012198\|Ga0137364_10011451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	5089	Open in IMG/M
3300012202\|Ga0137363_10703654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300012202\|Ga0137363_11770709	Not Available	510	Open in IMG/M
3300012203\|Ga0137399_11479992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	566	Open in IMG/M
3300012205\|Ga0137362_10937685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	738	Open in IMG/M
3300012206\|Ga0137380_10260010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1563	Open in IMG/M
3300012212\|Ga0150985_103245527	Not Available	562	Open in IMG/M
3300012212\|Ga0150985_109795313	Not Available	537	Open in IMG/M
3300012212\|Ga0150985_110116517	Not Available	1510	Open in IMG/M
3300012362\|Ga0137361_10045190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3602	Open in IMG/M
3300012363\|Ga0137390_11808246	Not Available	542	Open in IMG/M
3300012582\|Ga0137358_10022251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4095	Open in IMG/M
3300012685\|Ga0137397_10030791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3819	Open in IMG/M
3300012685\|Ga0137397_10366350	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300012929\|Ga0137404_10061059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2924	Open in IMG/M
3300012944\|Ga0137410_11876863	Not Available	530	Open in IMG/M
3300015052\|Ga0137411_1181549	Not Available	1258	Open in IMG/M
3300015241\|Ga0137418_10090390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2767	Open in IMG/M
3300015264\|Ga0137403_10997384	Not Available	684	Open in IMG/M
3300015264\|Ga0137403_11047614	Not Available	662	Open in IMG/M
3300015264\|Ga0137403_11412545	Not Available	544	Open in IMG/M
3300018027\|Ga0184605_10259948	Not Available	789	Open in IMG/M
3300018051\|Ga0184620_10012304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1972	Open in IMG/M
3300018052\|Ga0184638_1159682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	810	Open in IMG/M
3300018071\|Ga0184618_10163238	Not Available	917	Open in IMG/M
3300018071\|Ga0184618_10192593	Not Available	850	Open in IMG/M
3300019789\|Ga0137408_1008576	Not Available	966	Open in IMG/M
3300019877\|Ga0193722_1082114	Not Available	790	Open in IMG/M
3300019879\|Ga0193723_1055846	Not Available	1155	Open in IMG/M
3300019881\|Ga0193707_1037947	Not Available	1564	Open in IMG/M
3300019881\|Ga0193707_1090998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	923	Open in IMG/M
3300019883\|Ga0193725_1005886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3538	Open in IMG/M
3300019883\|Ga0193725_1051937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1046	Open in IMG/M
3300019883\|Ga0193725_1144137	Not Available	519	Open in IMG/M
3300019886\|Ga0193727_1027453	Not Available	1974	Open in IMG/M
3300019999\|Ga0193718_1075207	Not Available	718	Open in IMG/M
3300020001\|Ga0193731_1045048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1163	Open in IMG/M
3300020002\|Ga0193730_1001767	All Organisms → cellular organisms → Bacteria	5865	Open in IMG/M
3300020002\|Ga0193730_1013565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2324	Open in IMG/M
3300020022\|Ga0193733_1175011	Not Available	566	Open in IMG/M
3300020062\|Ga0193724_1109026	Not Available	555	Open in IMG/M
3300020170\|Ga0179594_10291781	Not Available	617	Open in IMG/M
3300020199\|Ga0179592_10399937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300021080\|Ga0210382_10002027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6679	Open in IMG/M
3300021080\|Ga0210382_10365784	Not Available	637	Open in IMG/M
3300021088\|Ga0210404_10835670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	526	Open in IMG/M
3300021180\|Ga0210396_10416558	Not Available	1180	Open in IMG/M
3300021344\|Ga0193719_10125157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1116	Open in IMG/M
3300021363\|Ga0193699_10333733	Not Available	632	Open in IMG/M
3300022756\|Ga0222622_10308698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1091	Open in IMG/M
3300025463\|Ga0208193_1083246	Not Available	638	Open in IMG/M
3300026285\|Ga0209438_1000360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	13610	Open in IMG/M
3300026285\|Ga0209438_1170894	Not Available	572	Open in IMG/M
3300026304\|Ga0209240_1271927	Not Available	521	Open in IMG/M
3300026340\|Ga0257162_1001975	All Organisms → cellular organisms → Bacteria → Proteobacteria	2257	Open in IMG/M
3300026358\|Ga0257166_1003514	All Organisms → cellular organisms → Bacteria → Proteobacteria	1682	Open in IMG/M
3300026361\|Ga0257176_1004280	All Organisms → cellular organisms → Bacteria → Proteobacteria	1590	Open in IMG/M
3300026489\|Ga0257160_1002865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1938	Open in IMG/M
3300026489\|Ga0257160_1012694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1236	Open in IMG/M
3300026497\|Ga0257164_1050510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	666	Open in IMG/M
3300027512\|Ga0209179_1103863	Not Available	633	Open in IMG/M
3300027535\|Ga0209734_1058825	Not Available	728	Open in IMG/M
3300027663\|Ga0208990_1003795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4874	Open in IMG/M
3300027671\|Ga0209588_1154745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300027862\|Ga0209701_10199850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Muriiphilus → Muriiphilus fusiformis	1192	Open in IMG/M
3300027910\|Ga0209583_10006691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3302	Open in IMG/M
3300027910\|Ga0209583_10012214	All Organisms → cellular organisms → Bacteria → Proteobacteria	2565	Open in IMG/M
3300027915\|Ga0209069_10030576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2520	Open in IMG/M
3300028047\|Ga0209526_10403503	Not Available	907	Open in IMG/M
3300028536\|Ga0137415_10045443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4280	Open in IMG/M
3300028793\|Ga0307299_10274568	Not Available	633	Open in IMG/M
3300028814\|Ga0307302_10180685	Not Available	1027	Open in IMG/M
3300028819\|Ga0307296_10173019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1170	Open in IMG/M
3300028828\|Ga0307312_10203332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1272	Open in IMG/M
3300028828\|Ga0307312_10548546	Not Available	764	Open in IMG/M
3300030830\|Ga0308205_1053348	Not Available	543	Open in IMG/M
3300030904\|Ga0308198_1086161	Not Available	535	Open in IMG/M
3300030993\|Ga0308190_1186679	Not Available	515	Open in IMG/M
3300031057\|Ga0170834_113783029	Not Available	534	Open in IMG/M
3300032515\|Ga0348332_12252883	Not Available	890	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.45%
Host-Associated	Host-Associated	4.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.91%
Aquatic	Environmental → Aquatic	14.55%
Plants	Host-Associated → Plants	4.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Sediment	Environmental → Aquatic → Sediment	10.00%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.00%
Loam	Environmental → Terrestrial → Soil → Loam	7.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.36%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	29.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.55%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.73%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.82%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010856	Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A_all_C_01105810	2140918007	Soil	KDNPRPQAKEGGVMTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGAPS
C688J14111_101999521	3300001305	Soil	VGSFGMGGDASMTTLQAMCLGAMLAWTPSLIVLAWLLREAPLDEL*
C688J18823_102784863	3300001686	Soil	MTTLQAICLGAMLAWTPSLVVLAWLLREAPLDEL*
C688J35102_1193484882	3300002568	Soil	RFYLVRSVRMGGGATMTTLQAICLGAMLAWTPSLVLLAWLLRDAPLDEL*
C688J35102_1208996984	3300002568	Soil	LWLRLLRGEGAAVTTLQAICLGAMLAWTPSVVVLAWLLREAPLDELDELQRDPS*
Ga0066670_105863882	3300005560	Soil	MTTLQAICLGAMLAWTPTLLVLAWLLREVPRDEL*
Ga0068854_1007456382	3300005578	Corn Rhizosphere	MTTLQAICLGAMLAWTPSLLVLAWLLREGPVDDF*
Ga0068856_1009321283	3300005614	Corn Rhizosphere	MGGGATMTTLQAICLGAMLAWTPSLVLLAWLLRDAPLLDEL*
Ga0066790_103932952	3300005995	Soil	MTTLQAIGFGAMLAWTPSLIVMALVLCETPLDVMDE
Ga0066652_1007022212	3300006046	Soil	IMTTLQAICLGAMLAWTPSLIVLAWLLREAPLDEF*
Ga0075024_1001315872	3300006047	Watersheds	MTTLQAMCLGAMLAWTPSLVVLALLLREAPLDELQHDPL*
Ga0075029_1004175191	3300006052	Watersheds	MTTLQAVGLGAMLAWTPSLFVLAWMLYDAPLDEHQRDRS*
Ga0075521_105990862	3300006642	Arctic Peat Soil	MGTANMTTLQAICYGTMLAWTPSLIVMALVLWETPLDVLD*
Ga0079222_109829822	3300006755	Agricultural Soil	MTTLEAMWLGEMLAWTPSLVVLAWLLREGPVDDF*
Ga0066659_107595321	3300006797	Soil	GGVMTTLQAMCFGAMLAWTPSLLVLALLLREDSLDEFQHDPS*
Ga0099791_106583942	3300007255	Vadose Zone Soil	TTLQAMCLGAMLAWTLSLVVLASLLREPPQLDELERDPS*
Ga0099793_100035498	3300007258	Vadose Zone Soil	MTTLQAMCLGAMLAWTLSLVVLASLLREPPLDELERDPS*
Ga0099794_107530291	3300007265	Vadose Zone Soil	MGWETQGGVMTTLQAICLGAMLAWTPSLVVLALLLGEVPPDEIQREPS*
Ga0099795_102260322	3300007788	Vadose Zone Soil	MTTLQAICLGAMLAWTPSLVVLAALLLREAPLEELERDPS*
Ga0066709_1006959653	3300009137	Grasslands Soil	MMTVQAICLGAMLAWTPSLVVLALLLIKIPPDELAEL*
Ga0116129_10369344	3300009633	Peatland	LTVDVMTTLQAICFGAMIAWTPSLVVMAWVLYEAPLDELDEFERDPS*
Ga0126309_100525862	3300010039	Serpentine Soil	MTTLQAICLGAMLAWTPSLVVLAWLLREAPVDEF*
Ga0126308_102285261	3300010040	Serpentine Soil	MTTLQAIWLGAMLAWTPSLVVLAWLLREAPVDELQ
Ga0126380_120308742	3300010043	Tropical Forest Soil	MSTLQAMCFGAMLAWTPGMIVLAVLLWREPRALDEV
Ga0127503_103125771	3300010154	Soil	GGVMTTLQAMCFGAMLAWTPSLVVLALLLREVPLDEPDELQRSQS*
Ga0099796_101931783	3300010159	Vadose Zone Soil	VNRCFRSLETQGGVMTTLQAMCLGAMLAWTLSLVVLASLLREPPLDELERDPS*
Ga0126358_10652302	3300010856	Boreal Forest Soil	GIMTTLQAICLGAMLAWTPSLVVLALLLRETPLDEVARVPS*
Ga0150983_155060693	3300011120	Forest Soil	MRVNVMTTLQAICFGAMLAWTPSLIVVSWLLRHAPLDEETPLDEFEELERDPS*
Ga0137389_100491297	3300012096	Vadose Zone Soil	MNRCFRSMESQGGVVTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPSKA*
Ga0137389_112160781	3300012096	Vadose Zone Soil	MTTLQAVCLGAMLAWTPSLVVLALLLREAPLDELQRGP
Ga0137364_100114512	3300012198	Vadose Zone Soil	MTTLQAVCLGAMLAWTPSLVVLALLLREPALDELQRDPS*
Ga0137363_107036542	3300012202	Vadose Zone Soil	MGWETQGGVMTTLQAICLGAMLAWTPSLVVLALLLGEVPLDEIQREAS*
Ga0137363_117707091	3300012202	Vadose Zone Soil	PESQGGVMTTLQAICLGAMLAWTPSLVVLALLLREPALDELQRDPS*
Ga0137399_114799922	3300012203	Vadose Zone Soil	VNRCFRSLETQGGVMTTLQAMCLGAMLAWTLSLVVLASLLREPPQLDELERDPS*
Ga0137362_109376851	3300012205	Vadose Zone Soil	ALFKGGETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLHEAPLDELQHDPS*
Ga0137380_102600101	3300012206	Vadose Zone Soil	QGDVMTTLQAICLGAMLSWTPSLVVLAALLLREAPLEELERDPS*
Ga0150985_1032455272	3300012212	Avena Fatua Rhizosphere	GATMTTLQAICLGAMLAWTPSLVLLAWLLRDAPLDEL*
Ga0150985_1097953133	3300012212	Avena Fatua Rhizosphere	ATMTTLQAICLGAMLAWTPSLVLLAWLLRDAPLDEL*
Ga0150985_1101165172	3300012212	Avena Fatua Rhizosphere	SKGALMTILEAMWLGAMLAWTPSLVVLAWLLRENPLDDL*
Ga0137361_100451901	3300012362	Vadose Zone Soil	MNRCFRSMESQGGVVTTLQAMCLGAMLAWTSSLVVLALLLRAAPVDDLEGDPS*
Ga0137390_118082462	3300012363	Vadose Zone Soil	MTTLQAICFEAMLARTPSLVVLAWLLREAPLDEL*
Ga0137358_100222511	3300012582	Vadose Zone Soil	ICQLNALLKGWETQGDVMTTLQAICLGAMLAWTPSLVVLAALLLREAPLDELERDPS*
Ga0137397_100307919	3300012685	Vadose Zone Soil	MTTLRAICLGAMLAWTPSLVVLALLLGEVPLDEIQREPS*
Ga0137397_103663502	3300012685	Vadose Zone Soil	MTTLQAMCLGAMLAWTLSLVVLASLLREPPLDELE
Ga0137404_100610592	3300012929	Vadose Zone Soil	MTTLQAMCLGAMLAWTPSLVVLALLLREAPLDELERDPS*
Ga0137410_118768632	3300012944	Vadose Zone Soil	GGETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLREAQLDELQHDPS*
Ga0137411_11815491	3300015052	Vadose Zone Soil	MYQLNALFKGWETQGDVMTTLQAVCLGAMLAWTPSFVVLALLLREAPLDELERDPS*
Ga0137418_100903902	3300015241	Vadose Zone Soil	MTTLQAICLGAMLAWTPSLVVLALLLREPALDELQRDPS*
Ga0137403_109973841	3300015264	Vadose Zone Soil	ETQGDVMTTLQAICLGAMLAWTPSLVVLAALLLREAPLEELERDPS*
Ga0137403_110476141	3300015264	Vadose Zone Soil	LNALLKGWETQGGVMTTLQAICLGAMLAWTPSLVVLAALLLREAPLEKLERDPS*
Ga0137403_114125451	3300015264	Vadose Zone Soil	MGWETQGGVMTTLQAICFGAMLAWTPSLVVLALLLGEAPLDELQRDPS*
Ga0184605_102599481	3300018027	Groundwater Sediment	LQAVCLGAMLSWTPSLVVLAALLLREAPLEELERDPS
Ga0184620_100123043	3300018051	Groundwater Sediment	MTTLQAMCLGAMLAWTPSLVVLALLLRETPLDELERDPS
Ga0184638_11596821	3300018052	Groundwater Sediment	QAMCLGAMLAWTPSLVVLALLLREAPLDEIEREPS
Ga0184618_101632381	3300018071	Groundwater Sediment	MTTLQAICLGAMLAWTPSLVVLALLLREPALDELQRD
Ga0184618_101925931	3300018071	Groundwater Sediment	QGGVMTTLQAICLGAMLAWTPSLVVLALLLRAAPVDDLEGDPSTA
Ga0137408_10085763	3300019789	Vadose Zone Soil	LNALLKDWEIQGGVMTTLQAICLGAMLAWTPSLVVLASLLLRETPLEELERDPS
Ga0193722_10821142	3300019877	Soil	LLKGRETQGDVMTTLQAICLGAMLSWTPSLVVLAALLLREAPLEELE
Ga0193723_10558461	3300019879	Soil	CFRSLVSQGGVMTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPS
Ga0193707_10379471	3300019881	Soil	QAMCLGAMLAWTPTLVVLALLLREAPLEELERDPS
Ga0193707_10909981	3300019881	Soil	TCPLRVETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLRESPLDEVERDPS
Ga0193725_10058866	3300019883	Soil	MTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPS
Ga0193725_10519371	3300019883	Soil	GRETQGGVMTTLQAICFGAMLAWTPSLVVLALLLCEAPLDELQRDPS
Ga0193725_11441371	3300019883	Soil	MTTLQAICLGAMLAWTPSLVVLALLLREPALDELQRDPS
Ga0193727_10274533	3300019886	Soil	MGWETQGGVMTTLQAICLGAMLAWTPSLVVLALLLGEVPLDEIQREPS
Ga0193718_10752071	3300019999	Soil	EGGVMTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPS
Ga0193731_10450483	3300020001	Soil	GGVMTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPS
Ga0193730_10017678	3300020002	Soil	MTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPF
Ga0193730_10135651	3300020002	Soil	MTTLQAMCLGAMLAWTPSLVVLVWLLREAPLDELQHDPS
Ga0193733_11750111	3300020022	Soil	KRGVMTTLQAMCLGAMLAWTPSLVVLALLLRAAPVDDLEGDPF
Ga0193724_11090261	3300020062	Soil	GGRETQGGVMTTLQAICFGAMLAWTPSLVVLALLLCEAPLDELQRDPS
Ga0179594_102917811	3300020170	Vadose Zone Soil	CSRAGETQGDVMTTLQAMCLGAMLAWTPSLVVLAALLLREAPLEELERDPS
Ga0179592_103999372	3300020199	Vadose Zone Soil	WETQGGVMTTLRAICLGAMLAWTPSLVVLALLLGDVPLDEIQREPS
Ga0210382_100020275	3300021080	Groundwater Sediment	MTTLQAMCLGAMLAWTPSRVVLVWLLREAPLDELQHDPS
Ga0210382_103657842	3300021080	Groundwater Sediment	LNALLKGWETQGDVMTTLQAICLGAMLAWTPSLVVLAALLL
Ga0210404_108356701	3300021088	Soil	MTTLQAICLGAMLAWTPSLIVLALLLRYVPLDELD
Ga0210396_104165582	3300021180	Soil	MTTIQAICFGAMLAWTPSLVVLALLLRAAPLEEDLAG
Ga0193719_101251573	3300021344	Soil	GVMTTLQAMCLGAMLAWTPSRVVLVWLLREAPLDELQHDPS
Ga0193699_103337331	3300021363	Soil	ASYGVNRCFRSLETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLRESPLDEVERDPS
Ga0222622_103086981	3300022756	Groundwater Sediment	MTTLQAMCLGAMLAWTPSLVVLALLFREAPLDELE
Ga0208193_10832461	3300025463	Peatland	LTVDVMTTLQAICFGAMIAWTPSLVVMAWVLYEAPLDELDEFERDPS
Ga0209438_10003607	3300026285	Grasslands Soil	MYQLNALFKGWETQGDVMTTLQAVCLGAMLAWTPSFVVLALLLREAPLDELERDPS
Ga0209438_11708941	3300026285	Grasslands Soil	GPESQGGVMTTLQAICLGAMLAWTPSLVVLALLLREPALDELQRDPS
Ga0209240_12719272	3300026304	Grasslands Soil	MYQLNALFKGWETQGDVMTTLQAVCLGAMLAWTPSLVVLALLLREAPLDELERDPS
Ga0257162_10019757	3300026340	Soil	IYELNALFKGGETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLHEAPLDELQHDPS
Ga0257166_10035141	3300026358	Soil	ETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLHEAPLDELQHDPS
Ga0257176_10042801	3300026361	Soil	ELNALFKGGETQGGVMTTLQAMCLGAMLAWTPSLVVLALLLREAPLDELQHDPS
Ga0257160_10028655	3300026489	Soil	RSLETQGGVMTTLQAMCLGAMLAWTLSLVVLASLLREPPLDELERDPS
Ga0257160_10126943	3300026489	Soil	GVMTTLQAMCLGAMLAWTPSLVVLALLLHEAPLDELQHDPS
Ga0257164_10505101	3300026497	Soil	CFRSLETQGGVMTTLQAMCLGAMLAWTLSLVVLASLLREPPLDELERDPS
Ga0209179_11038631	3300027512	Vadose Zone Soil	MTTLQAICLGAMLAWTPSLVVLAALLLREAPLEELERDPS
Ga0209734_10588252	3300027535	Forest Soil	QGDVMTTLQAVCLGAMLAWTPSLVVLALLLREAPLDELERDPS
Ga0208990_10037951	3300027663	Forest Soil	VMTTLQAVCLGAMLAWTPSLVVLALLLREAPLDELERDPS
Ga0209588_11547451	3300027671	Vadose Zone Soil	MGWETQGGVMTTLQAICLGAMLAWTPSLVVLALLLGEVPPDEIQREPS
Ga0209701_101998501	3300027862	Vadose Zone Soil	YQLNALLKGWETQGDVMTTLQAVCLGAMLAWTPSLVVLALLLREAPLDELERDPS
Ga0209583_100066913	3300027910	Watersheds	MTTLQAMCLGAMLAWTPSLVVLALLLRETPLDELERHPS
Ga0209583_100122143	3300027910	Watersheds	MTTLQAMCLGAMLAWTPSLAVLAWLLREAPLDELQHDPS
Ga0209069_100305765	3300027915	Watersheds	MTTLQAMCLGAMLAWTPSLVVLALLLREAPLDELQHDPL
Ga0209526_104035032	3300028047	Forest Soil	MTTLQAIWLGAMLAWTPSLVVLALLLREPPLDELDPFSRKPPVT
Ga0137415_100454436	3300028536	Vadose Zone Soil	MTTLQAVCLGAMLAWTPSLVVLALLLREPALDELQRDPS
Ga0307299_102745681	3300028793	Soil	DVMTTLQAICLGAMLSWTPSLVVLAALLLREAPLEELERDPS
Ga0307302_101806852	3300028814	Soil	LNALLKGWETQGDVMTTLQAICLGAMLAWTPSLVVLAALLLREAPLEELERDPS
Ga0307296_101730193	3300028819	Soil	RCFRGLESQGGVMTTLQAMCLGAMLAWTPSLVVLVWLLREAPLDELQHDPS
Ga0307312_102033322	3300028828	Soil	LKGRETQGDVMTTLQAICLGAMLSWTPSLVVLAALLLREAPLEELERDPS
Ga0307312_105485461	3300028828	Soil	MTTLQAICLGAMLSWTPSLVVLAALLLREAPLEELE
Ga0308205_10533481	3300030830	Soil	PESQGGIMTTLQAICLGALLAWTPSLVVFALLLREPALDELQRDPS
Ga0308198_10861611	3300030904	Soil	QGDVMTTLQAMCLGAMLAWAPSLVVLALLLREAPLDELQHDPS
Ga0308190_11866791	3300030993	Soil	SFTSGPESQGGIMTTLQAICLGALLAWTPSLVVFALLLREPALDELQRDPS
Ga0170834_1137830291	3300031057	Forest Soil	VAEGGDTQGGVMTTLQAICLGAMLAWAPSLIVLAFLLRKVPLDELDELQRDPS
Ga0348332_122528834	3300032515	Plant Litter	RVNVMTTLQAICFGAMLAWTPSLIVVSWLLRHAPLDEETPLDEFEELESDPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087076

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences