Metagenome / Metatranscriptome Family F087008

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087008
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	86 residues
Representative Sequence	MAETAPRSVRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIVLAVALGVFYFLRPRATKPP
Number of Associated Samples	78
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	33.64 %
% of genes near scaffold ends (potentially truncated)	30.91 %
% of genes from short scaffolds (< 2000 bps)	66.36 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (31.818 % of family members)
Environment Ontology (ENVO)	Unclassified (39.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (83.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.77% β-sheet: 0.00% Coil/Unstructured: 41.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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SCOP family	SCOP domain	Representative PDB	TM-score
a.24.9.1: alpha-catenin/vinculin	d3rf3b2	3rf3	0.76797
a.24.8.1: Proteasome activator	d1yaro_	1yar	0.75457
c.49.2.0: automated matches	d5ik2g_	5ik2	0.75097
c.49.2.1: ATP synthase (F1-ATPase), gamma subunit	d1fs0g_	1fs0	0.74863
f.70.1.1: Extracellular adhesion domain of SabA	d4o5ja_	4o5j	0.74048

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00986	DNA_gyraseB_C	31.82
PF00521	DNA_topoisoIV	17.27
PF01751	Toprim	13.64
PF02518	HATPase_c	4.55
PF03989	DNA_gyraseA_C	3.64
PF08299	Bac_DnaA_C	2.73
PF13277	YmdB	1.82
PF02768	DNA_pol3_beta_3	1.82
PF01555	N6_N4_Mtase	0.91
PF02653	BPD_transp_2	0.91
PF03483	B3_4	0.91
PF03641	Lysine_decarbox	0.91
PF10282	Lactonase	0.91
PF00246	Peptidase_M14	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0187	DNA gyrase/topoisomerase IV, subunit B	Replication, recombination and repair [L]	31.82
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	20.91
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	2.73
COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	Replication, recombination and repair [L]	1.82
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.91
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.91
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.91
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.27 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.27 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.27 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.00 %
Unclassified	root	N/A	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.82 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.45 %
Unclassified	root	N/A	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.82 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.45 %
Unclassified	root	N/A	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.82 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Unclassified	root	N/A	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002909\|JGI25388J43891_1000147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13286	Open in IMG/M
3300005167\|Ga0066672_10351350	All Organisms → cellular organisms → Bacteria → Acidobacteria	963	Open in IMG/M
3300005172\|Ga0066683_10060781	All Organisms → cellular organisms → Bacteria	2245	Open in IMG/M
3300005172\|Ga0066683_10272040	All Organisms → cellular organisms → Bacteria → Acidobacteria	1052	Open in IMG/M
3300005180\|Ga0066685_10908792	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300005184\|Ga0066671_11023697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300005187\|Ga0066675_10111719	All Organisms → cellular organisms → Bacteria → Acidobacteria	1822	Open in IMG/M
3300005454\|Ga0066687_10084617	All Organisms → cellular organisms → Bacteria → Acidobacteria	1567	Open in IMG/M
3300005537\|Ga0070730_10008844	All Organisms → cellular organisms → Bacteria	8412	Open in IMG/M
3300005540\|Ga0066697_10087849	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300005540\|Ga0066697_10165480	All Organisms → cellular organisms → Bacteria → Acidobacteria	1309	Open in IMG/M
3300005542\|Ga0070732_10002197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10592	Open in IMG/M
3300005566\|Ga0066693_10221365	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300005576\|Ga0066708_10070558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2009	Open in IMG/M
3300005764\|Ga0066903_102839199	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300005764\|Ga0066903_102853638	All Organisms → cellular organisms → Bacteria → Acidobacteria	937	Open in IMG/M
3300006755\|Ga0079222_10161603	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300006755\|Ga0079222_10684623	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300006755\|Ga0079222_11147551	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300006804\|Ga0079221_10013506	All Organisms → cellular organisms → Bacteria	3182	Open in IMG/M
3300006806\|Ga0079220_10073605	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300006806\|Ga0079220_10118604	All Organisms → cellular organisms → Bacteria → Acidobacteria	1406	Open in IMG/M
3300006914\|Ga0075436_100189042	All Organisms → cellular organisms → Bacteria → Acidobacteria	1457	Open in IMG/M
3300006954\|Ga0079219_10205199	All Organisms → cellular organisms → Bacteria → Acidobacteria	1122	Open in IMG/M
3300006954\|Ga0079219_10239762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1068	Open in IMG/M
3300009137\|Ga0066709_100002967	All Organisms → cellular organisms → Bacteria	12750	Open in IMG/M
3300009792\|Ga0126374_10976004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300010043\|Ga0126380_10001843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8209	Open in IMG/M
3300010046\|Ga0126384_10007548	Not Available	6685	Open in IMG/M
3300010046\|Ga0126384_10164115	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M
3300010047\|Ga0126382_11801905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300010048\|Ga0126373_10008647	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8101	Open in IMG/M
3300010048\|Ga0126373_10086213	All Organisms → cellular organisms → Bacteria	2875	Open in IMG/M
3300010048\|Ga0126373_10130534	All Organisms → cellular organisms → Bacteria	2364	Open in IMG/M
3300010048\|Ga0126373_11118218	All Organisms → cellular organisms → Bacteria → Acidobacteria	854	Open in IMG/M
3300010048\|Ga0126373_11138947	All Organisms → cellular organisms → Bacteria → Acidobacteria	846	Open in IMG/M
3300010048\|Ga0126373_11794038	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300010095\|Ga0127475_1011486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300010303\|Ga0134082_10012031	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3125	Open in IMG/M
3300010321\|Ga0134067_10003903	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3851	Open in IMG/M
3300010321\|Ga0134067_10102380	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300010322\|Ga0134084_10215111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300010323\|Ga0134086_10129840	Not Available	908	Open in IMG/M
3300010337\|Ga0134062_10108470	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300010358\|Ga0126370_10001750	All Organisms → cellular organisms → Bacteria → Acidobacteria	9991	Open in IMG/M
3300010358\|Ga0126370_10023345	All Organisms → cellular organisms → Bacteria	3598	Open in IMG/M
3300010358\|Ga0126370_10047343	All Organisms → cellular organisms → Bacteria → Acidobacteria	2711	Open in IMG/M
3300010358\|Ga0126370_10619339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	937	Open in IMG/M
3300010358\|Ga0126370_11074554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300010358\|Ga0126370_11839429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300010359\|Ga0126376_10396682	All Organisms → cellular organisms → Bacteria → Acidobacteria	1241	Open in IMG/M
3300010359\|Ga0126376_13002168	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300010361\|Ga0126378_10257949	All Organisms → cellular organisms → Bacteria → Acidobacteria	1839	Open in IMG/M
3300010361\|Ga0126378_10670821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1149	Open in IMG/M
3300010361\|Ga0126378_11122318	All Organisms → cellular organisms → Bacteria → Acidobacteria	886	Open in IMG/M
3300010361\|Ga0126378_12390358	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300010361\|Ga0126378_12923245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300010361\|Ga0126378_13238884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300010364\|Ga0134066_10022784	Not Available	1408	Open in IMG/M
3300010366\|Ga0126379_12099102	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300010376\|Ga0126381_100004158	All Organisms → cellular organisms → Bacteria → Acidobacteria	15722	Open in IMG/M
3300010376\|Ga0126381_103025766	All Organisms → cellular organisms → Bacteria → Acidobacteria	667	Open in IMG/M
3300010398\|Ga0126383_11250581	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300012207\|Ga0137381_11308891	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300012210\|Ga0137378_10786278	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300012211\|Ga0137377_10350092	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300012349\|Ga0137387_10110461	All Organisms → cellular organisms → Bacteria	1927	Open in IMG/M
3300012383\|Ga0134033_1088780	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300015356\|Ga0134073_10142643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300018431\|Ga0066655_10001999	All Organisms → cellular organisms → Bacteria → Acidobacteria	7554	Open in IMG/M
3300018482\|Ga0066669_10051097	All Organisms → cellular organisms → Bacteria	2612	Open in IMG/M
3300018482\|Ga0066669_10090098	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M
3300021560\|Ga0126371_10036195	All Organisms → cellular organisms → Bacteria	4655	Open in IMG/M
3300021560\|Ga0126371_10045415	All Organisms → cellular organisms → Bacteria	4186	Open in IMG/M
3300021560\|Ga0126371_10262517	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300021560\|Ga0126371_10536565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1319	Open in IMG/M
3300021560\|Ga0126371_10985450	All Organisms → cellular organisms → Bacteria → Acidobacteria	985	Open in IMG/M
3300021560\|Ga0126371_12080995	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300026307\|Ga0209469_1139788	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300026312\|Ga0209153_1000213	All Organisms → cellular organisms → Bacteria → Acidobacteria	31192	Open in IMG/M
3300026314\|Ga0209268_1006461	All Organisms → cellular organisms → Bacteria → Acidobacteria	5064	Open in IMG/M
3300026316\|Ga0209155_1048903	All Organisms → cellular organisms → Bacteria → Acidobacteria	1651	Open in IMG/M
3300026329\|Ga0209375_1033527	All Organisms → cellular organisms → Bacteria	2741	Open in IMG/M
3300026330\|Ga0209473_1006057	All Organisms → cellular organisms → Bacteria → Acidobacteria	6317	Open in IMG/M
3300026334\|Ga0209377_1000353	All Organisms → cellular organisms → Bacteria	30177	Open in IMG/M
3300026342\|Ga0209057_1152233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300026542\|Ga0209805_1426802	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300026547\|Ga0209156_10312106	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300027527\|Ga0209684_1006682	All Organisms → cellular organisms → Bacteria → Proteobacteria	1897	Open in IMG/M
3300027548\|Ga0209523_1026999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1140	Open in IMG/M
3300027725\|Ga0209178_1009073	All Organisms → cellular organisms → Bacteria	3115	Open in IMG/M
3300027765\|Ga0209073_10370464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300027775\|Ga0209177_10483826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300027842\|Ga0209580_10053698	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300027857\|Ga0209166_10001830	All Organisms → cellular organisms → Bacteria	16926	Open in IMG/M
3300027874\|Ga0209465_10644604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300031543\|Ga0318516_10541971	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300031544\|Ga0318534_10038738	All Organisms → cellular organisms → Bacteria → Acidobacteria	2638	Open in IMG/M
3300031668\|Ga0318542_10022429	All Organisms → cellular organisms → Bacteria → Acidobacteria	2620	Open in IMG/M
3300031754\|Ga0307475_10003437	All Organisms → cellular organisms → Bacteria → Acidobacteria	9626	Open in IMG/M
3300031770\|Ga0318521_10153640	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300031846\|Ga0318512_10103062	All Organisms → cellular organisms → Bacteria → Acidobacteria	1343	Open in IMG/M
3300031880\|Ga0318544_10004080	All Organisms → cellular organisms → Bacteria	4298	Open in IMG/M
3300031910\|Ga0306923_10117867	All Organisms → cellular organisms → Bacteria → Acidobacteria	3009	Open in IMG/M
3300031962\|Ga0307479_10301336	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300031981\|Ga0318531_10473264	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300032066\|Ga0318514_10277246	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300032067\|Ga0318524_10161770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300032180\|Ga0307471_100000323	All Organisms → cellular organisms → Bacteria	24420	Open in IMG/M
3300033290\|Ga0318519_10046009	All Organisms → cellular organisms → Bacteria	2155	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.09%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.64%
Loam	Environmental → Terrestrial → Soil → Loam	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.55%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	31.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	18.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	10.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010095	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012383	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25388J43891_10001475	3300002909	Grasslands Soil	MAEIAPRSARDAIRWGLLLSAVAVAGFRLPRTCGAFRDWHEVRLSDPSAAELDRLTFAANAVAIAIILVVAMGVFYLLRPRRSKQP*
Ga0066672_103513502	3300005167	Soil	MAEIAPRSPRDAVRWGLLLAAMAVTGFRLPRTYGAFRNWHAVRFSDPSAAELYRLNFTANAVGIAIVLLLALGAFYLLRPRRPKPS*
Ga0066683_100607813	3300005172	Soil	MAEIAPRSARDAIRWGLLLSAVAVAGFRLPRTCGAFRDWHEVRLSDPSAAELDRLTFTANAVAIAIILVVAMGVFYLLRPRRSKQP*
Ga0066683_102720401	3300005172	Soil	MAEVAIKSTRDAVRWGLLLSAMAVSGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP*
Ga0066685_109087922	3300005180	Soil	MAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0066671_110236971	3300005184	Soil	RGASSLRTMRSKSATWIFDDIGLFRGAKLMAEMASRSTRDAIRWGLLLSAVAVAGFRLPSIYSTFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0066675_101117193	3300005187	Soil	MAEVAIKSTRGAVRWGLLLSAMAVSGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP*
Ga0066687_100846172	3300005454	Soil	LFRGAKLMAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0070730_100088447	3300005537	Surface Soil	MAEIVPRSNRDGVRWGLMLAAVAVAGFRLPSTYRSFQDWRGVRFSDPSAAEFYRLTFTANIVGIAIIFFVALGVFYFLRPRAPKQP*
Ga0066697_100878492	3300005540	Soil	MAETVSRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFLDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKQS*
Ga0066697_101654801	3300005540	Soil	SRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0070732_100021975	3300005542	Surface Soil	MGEITPRSTRDAIRWGSLLAAIAVTGFRLPQAYSAFRDWHAMRFSDPSAAELYRLNFTANAVGIVIILALALGVFYFLRPRTPKQP*
Ga0066693_102213651	3300005566	Soil	KLMAEVAIKSTRDAVRWGLLLSAMAVSGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP*
Ga0066708_100705582	3300005576	Soil	MAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0066903_1028391991	3300005764	Tropical Forest Soil	IAPRSLRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWYSVRFSDPPAAELYRLNFTANAIGIAIVLAVAIGVFYFLRPRAPKQP*
Ga0066903_1028536382	3300005764	Tropical Forest Soil	MAETSPRSIRDAVRWGLLLSAVAVAGFRMPSTYGVFEEWHAARISDPSAAEMYRRTLTANIVGMAIVLAVAIGVFYSLRPRAPKRT*
Ga0079222_101616032	3300006755	Agricultural Soil	MAETASRSARDAIRWGLLLSAVAVAGFRLPGTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIVLAVALGVFYFLRPRATKPP*
Ga0079222_106846231	3300006755	Agricultural Soil	TWIFDDVGFFGGANLMAESAPRSIRDAIRWGLLLAAVAVSGFRLPQTYGAFRDWHAARFSDPSAADLYRLNFTANAVGMVIILVVALAVFYFLRPRATKLP*
Ga0079222_111475512	3300006755	Agricultural Soil	MGEIAPRSTRDAIRWGSLLSAVAVAGFRLPNTYGAFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYLLRPRIAKQS*
Ga0079221_100135063	3300006804	Agricultural Soil	MAETAPRSIRDAIRWGLLLAAVAVSGFRLPQTYGAFRGWRAVRFSDPSAAELYRLNLTANAVGIAIVLAVAIAVFYLLRPRIAKQS*
Ga0079220_100736053	3300006806	Agricultural Soil	MAESAPRSIRDAIRWGLLLAAVAVSGFRLPQTYGAFRDWHAARFSDPSAADLYRLNFTANAVGMVIILVVALAVFYFLRPRATKLP*
Ga0079220_101186042	3300006806	Agricultural Soil	MAENDPRSVRDAIRWGLLLAAVAVSGFRLPGTYGAFRDWHAVRFSDPSAAELYRLNFTANALGITIVLAVALGVFYFLRPRTPRQP*
Ga0075436_1001890423	3300006914	Populus Rhizosphere	LISGGTKLMAETASRSVRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIVLAVAMGAFYLLRPRTTKQP*
Ga0079219_102051992	3300006954	Agricultural Soil	MAETAPRSVRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIVLAVALGVFYFLRPRATKPP*
Ga0079219_102397621	3300006954	Agricultural Soil	MAETAPRSIRDAIRWGLLLAAVAVSGFRLPQTYGAFRGWRAVRFSDPSAAELYRLNLTANAVGIAIVLAVAIAVFYLLRPRIAKQ
Ga0066709_1000029678	3300009137	Grasslands Soil	MAEVAIKSTRDAVRWGLLLSAMAVSGFRLPRTYGDFRVWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP*
Ga0126374_109760042	3300009792	Tropical Forest Soil	LIAMAGEPMAEMAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIAIILLVALGMFYLLRPRTAQRP*
Ga0126380_100018435	3300010043	Tropical Forest Soil	MTEIAPRPMRDAVRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRFSDPSAAELYRLNFTADAVGIAIVLAVALGVFYMLRPRTTKQP*
Ga0126384_100075484	3300010046	Tropical Forest Soil	MTEIAPRPMRDAVRWGLLLSAVAVAGFRLLSIYGAFRDWHAVRFSDLSAAELYRLNFTADAVGIAIVLAVAL
Ga0126384_101641153	3300010046	Tropical Forest Soil	LRPMRDAVRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRFSDPSAAELYRLNFTANAVGIAIVLAVALGVFYMLRPRTTKQP*
Ga0126382_118019052	3300010047	Tropical Forest Soil	MTEIAPRPMRDAVRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRFSDPTAAELYRLNFTANAVGIAIVLAVALGVFYMLRPRTTKQP*
Ga0126373_100086472	3300010048	Tropical Forest Soil	MAETDPRSIRDAIRWGLLLSAVGVAGFRLPSTYGAFRDWHAVRFSDPSAAEMYRLTLTANLVGISIILAGALAVFYFLRPRAPKQP*
Ga0126373_100862131	3300010048	Tropical Forest Soil	MAQIAPSSTRDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHVVRFSDPAAAELYRINFTANAVGMAIILVVALGVF
Ga0126373_101305343	3300010048	Tropical Forest Soil	MAGEPMAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGALRDWHEIRLSNPPAAELYRVTFTANAVAIAIILLVALGVFYLLRPRTPKRP*
Ga0126373_111182182	3300010048	Tropical Forest Soil	MAQIAPSSTRDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHGVRFSDPAAAELYRTNFTANAVGMAIILVVALGVFYLLRPRRPKQQP*
Ga0126373_111389472	3300010048	Tropical Forest Soil	LILLIPEGAMLMAEVAPQSTRDAIRWGLLLSAVGVAGFRLPSTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIILVVALAVFYFLRPRTTKQP*
Ga0126373_117940382	3300010048	Tropical Forest Soil	MAETAPNSIRDAIRWGLLLSAVGVAGFRLPSTYGAFRDWQAARFSDPSAAEMYRLTLTANVVGMAIILAVALGVFY
Ga0127475_10114862	3300010095	Grasslands Soil	MAEIAPRSTRDAVRWGLLLSAAAVSGFRLPRTYGAFRDWHAIRSTDRSASELYRLNFTANAVGIVIILVLALGVFYLLRPRAPKQP*
Ga0134082_100120312	3300010303	Grasslands Soil	LFRGAKLMAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0134067_100039032	3300010321	Grasslands Soil	LFRGAKLMAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFLDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKQS*
Ga0134067_101023803	3300010321	Grasslands Soil	MAEIAPRSTRDAVRWGLLLSAAAVSGFRLPRTYGAFRDWHAIRSTDRSAAELYRLNFTANAVGIVIILVLALGVFYLLRPRAPKQP*
Ga0134084_102151111	3300010322	Grasslands Soil	MAETVSRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0134086_101298402	3300010323	Grasslands Soil	MAEVAIKSTRDAVRWGLLLSAMAVSGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYL
Ga0134062_101084701	3300010337	Grasslands Soil	AVRWGLLLSAMAVCGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP*
Ga0126370_100017508	3300010358	Tropical Forest Soil	VTLMAETAPRPIRDAIRWGLLLSAVAVAGFRLPGTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIAIVLAVAIGVFYFLRPRASKLP*
Ga0126370_100233452	3300010358	Tropical Forest Soil	MLMAETAPRSIRDAVRWGLLLSAVAVAGFRLPSTYGVFEEWHAARISDPSAAEMYRRTLTANIVGMAIVLAVAIGVFYSLRPRAPKPT*
Ga0126370_100473432	3300010358	Tropical Forest Soil	MTEIAPRPMRDAVRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRFSDPSAAELYRLNFTANAVGIAIVLAVALGVFYMLRPRTTKQP*
Ga0126370_106193392	3300010358	Tropical Forest Soil	MAEIAARPIRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIAIVLAVAIAVFYVLRPRP
Ga0126370_110745542	3300010358	Tropical Forest Soil	MAEIAPRSLRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWYSVRFSDPPAAELYRLNFTANAIGIAIVLAVAIGVFYFLRPRAPKQP*
Ga0126370_118394292	3300010358	Tropical Forest Soil	PPNSIRDAIRWGLLLSAVGVAGFRLPSTYGAFRDWHALRLSDPSAAEMYRLTLTANVVGIASILAVALGVFYFLRPRAPKQP*
Ga0126376_103966822	3300010359	Tropical Forest Soil	MAQIAPSSTRDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHVVRFSDPAAAELYRINFTANAVGMAIILVVALGVFYLLRPRGPKQP*
Ga0126376_130021681	3300010359	Tropical Forest Soil	SNQGSTRDAIRWGLLLAAVAVTGFRLPGTYRNLRDWQAVRLSDPSAAELNRLNFTANAVGIVIILVVTLAVFYFLRPRTTKQP*
Ga0126378_102579493	3300010361	Tropical Forest Soil	MARIAPRSARDAIRWGLLLSAVGVTGFRLPRTYGAFRDWHGVRFSDPAAAELYRLNFTANAVGMAIILVVALGVFYLLRPRTPKQP*
Ga0126378_106708212	3300010361	Tropical Forest Soil	MAGEPMAEMAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWHEVRLSDPPAAELYRLTFTANAMAIAIILLVALGVFYLLRPRTPKRP*
Ga0126378_111223183	3300010361	Tropical Forest Soil	RIAPRSARDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHVVRFSDPAAAELYRINFTANAVGMAIILVVALGVFYLLRPRGPKQP*
Ga0126378_123903582	3300010361	Tropical Forest Soil	MSEIVPRSNQGSTRDAIRWGLLLAAVAVTGFRLPGTYRNLRDWQAVRLSDPSAAELNRLNFTANAVGIVIILIVALAVFYFLRPRTTKQP*
Ga0126378_129232452	3300010361	Tropical Forest Soil	MAETAPRSIREAIRWGLLLSAVGVAGFRLPSTYGAFRDWREVRFSDPSAAELYRLNFTANAVGIAIVLAVALGVFYFLRPRAAKQP*
Ga0126378_132388841	3300010361	Tropical Forest Soil	MAEIAPRPIRDAIRWGLLLSAVGVAGFRLPSTYGAFRDWHAVRFSDPSAAELYRLNFTANAVGIAIVVAVAAGVFYLLRPRAPKQP*
Ga0134066_100227841	3300010364	Grasslands Soil	MAETVSRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFLDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFL
Ga0126379_120991021	3300010366	Tropical Forest Soil	TRDAIRWGLLLAAVAVSGFRLPRTYGALRDWHEIRLSNPPAAELYRVTFTANAVAIAIILLVALGVFYLLRPRTPKRP*
Ga0126381_1000041582	3300010376	Tropical Forest Soil	MAETDPRSIRDAIRWGLLLAAVGVAGFRLPSTYGAFRDWHAVRFSDPSAAETYRLTLTANIVGISIILAVALAVFYFLRPRAPKQP*
Ga0126381_1030257662	3300010376	Tropical Forest Soil	MIVTAQIPMAEIVPRSNQGSTRDAIRWGLLLAAVAVTGFRLPGTYRNLRDWRAVRLADPSAAELNRLNFTANAVGIVIILIVALAVFYFLRPRTTKQP*
Ga0126383_112505811	3300010398	Tropical Forest Soil	MAETSPRSIRDAVRWGLLLSAVAVAGFRMPSTYGVFEEWHAARISDPSAAEMYRLTLTANIVGMAIVLAV
Ga0137381_113088911	3300012207	Vadose Zone Soil	TPDAIRWGLLLSAMAVTGFRLPRTYGDFRGWQEVRFANPSAAERYRINFTVNAVGIAIILVLAVGAFYLLRPRTRKQP*
Ga0137378_107862782	3300012210	Vadose Zone Soil	MADIASGSTRDAIRWGLLLSAVAVSGFRLPRTYGYFRGWRALRFSEPSAAELYRINFTVNAVGIAITLVLAVGAFYLLRRRTPKQP*
Ga0137377_103500923	3300012211	Vadose Zone Soil	LISLAGELMAEIAPRSARDAIRWGLLLSALAVVGFRLPRTYAAFRDWHEVRLSDPSAAGLDRLTFTANAVAMAIILVVALGVFYLLRPRRPNEP*
Ga0137387_101104612	3300012349	Vadose Zone Soil	LISLAGELMAEIAPRSARDAIRWGLLLSALAVVGFRLPRTYSAFRDWHEVRLSDPSAAGLDRLTFTANAVAMAIILVVALGVFYLLRPRRPNEP*
Ga0134033_10887801	3300012383	Grasslands Soil	DAVRWGLLLSAAAVSGFRLPRTYGAFRDWHAIRSTDRSAAELYRLNFTANAVGIVIILVLALGVFYLLRPRAPKQP*
Ga0134073_101426432	3300015356	Grasslands Soil	LFRGAKLMAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFSDQSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS*
Ga0066655_100019993	3300018431	Grasslands Soil	MAEIAPRSARDAIRWGLLLSAVAVAGFRLPRTCGAFRDWHEVRLSDPSAAELDRLTFTANAVAIAIILVVAMGVFYLLRPRRSKQP
Ga0066669_100510972	3300018482	Grasslands Soil	MAEVAIKSTRDAVRWGLLLSAMAVSGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP
Ga0066669_100900982	3300018482	Grasslands Soil	MAEIAPRSARDAIRWGLLLSAVAVAGFRLPRTCGAFRDWHEVRLSDPSAAELDRLTFAANAVAIAIILVVAMGVFYLLRPRRSKQP
Ga0126371_100361953	3300021560	Tropical Forest Soil	MAQIAPSSTRDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHVVRFADPAAAELYRINFTANAVGMAIILVVALGVFYLLRPRGPKQP
Ga0126371_100454153	3300021560	Tropical Forest Soil	MTEIAPRPMRDAVRWGLLLSAVAVAGFRLPSTYGAFRDWHAVRFSDPSAAELYRLNFTANAVGIAIVLAVALGVFYMLRPRTTKQP
Ga0126371_102625172	3300021560	Tropical Forest Soil	LILLIPEGAMLMAEVAPQSTRDAIRWGLLLSAVGVAGFRLPSTYGAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIILVVTLAVFYFLRPRTTKQP
Ga0126371_105365653	3300021560	Tropical Forest Soil	MAETDPRSIRDAIRWGLLLAAVGVAGFRLPSTYGAFRDWHAVRFSDPSAAETYRLTLTANIVGISIILAVALAVFYFLRPRAPKQP
Ga0126371_109854502	3300021560	Tropical Forest Soil	MAGELMAEIAPRSTRDAIRWGLLLSAVAVAGFRLPSTYGAFRDWYSVRFSDPPAAELYRLNFTANAVGIAIVLAVAIGVFYFLRPRAPKQP
Ga0126371_120809952	3300021560	Tropical Forest Soil	MAEIVPRSNQGSTRDAIRWGLLLAAVAVSGFRLPNAYRNFRDWQAVRVSDPSAADLFRLNFTANAVGIVIILIVALAVFYFLRPRTTKQP
Ga0209469_11397881	3300026307	Soil	APRSARDAIRWGLLLSAVAVAGFRLPRTCGAFRDWHEVRLSDPSAAELDRLTFAANAVAIAIILVVAMGVFYLLRPRRSKQP
Ga0209153_100021320	3300026312	Soil	MAEIAPRSPRDAVRWGLLLAAMAVTGFRLPRTYGAFRNWHAVRFSDPSAAELYRLNFTANAVGIAIVLLLALGAFYLLRPRRPKPS
Ga0209268_10064612	3300026314	Soil	MAEIAPRSARDAIRWGLLLSAVAVAGFRLPRTYGAFRDWHEVRLSDPSAAELDRLTFTANAVAIAIILVVAMGVFYLLRPRRSKQP
Ga0209155_10489034	3300026316	Soil	MAETVSRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRTVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS
Ga0209375_10335271	3300026329	Soil	MAEVAIKSTRDAVRWGLLLSAMAVSGFRLPRTYGNFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRPPAPKQP
Ga0209473_10060574	3300026330	Soil	LFRGAKLMAEMASRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS
Ga0209377_100035314	3300026334	Soil	MAEIAPRSARDAIRWGLLLSAVAVKGFRLPRTCGAFRDWHEVRLSDPSAAELDRLTFAANAVAIAIILVVAMGVFYLLRPRRSKQP
Ga0209057_11522333	3300026342	Soil	KLMAETVSRSTRDAIRWGLLLSAVAVAGFRLPSTYSTFRDWRAVRFSDPSAAELYRLNFTANVVGIVIVLAVAAAVFYFLRPRISKRS
Ga0209805_14268022	3300026542	Soil	RSPRDAVRWGLLLAAMAVTGFRLPRTYGAFRNWHAVRFSDPSAAELYRLNFTANAVGIAIVLLLALGAFYLLRPRRPKPS
Ga0209156_103121062	3300026547	Soil	MAEVAIKSTRGAVRWGLLLSAMAVSGFRLPRTYGDFRGWQEVRFSDPSAAELYRINFTVNAVGIAIIVVLAVGAFYLLRP
Ga0209684_10066821	3300027527	Tropical Forest Soil	MAEIVPRSNQGSTRDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHVVRFSDPAAAELYRINFTANAVGMAIILVVAL
Ga0209523_10269992	3300027548	Forest Soil	MAEIVPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWHAVHLANPPAAELYRLTFTANAVAIAIILLVASGVFYLLRPRTPPRP
Ga0209178_10090733	3300027725	Agricultural Soil	MAETAPRSIRDAIRWGLLLAAVAVSGFRLPQTYGAFRGWRAVRFSDPSAAELYRLNLTANAVGIAIVLAVAIAVFYLLRPRIAKQS
Ga0209073_103704642	3300027765	Agricultural Soil	MAENDPRSVRDAIRWGLLLAAVAVSGFRLPGTYGAFRDWHAVRFSDPSAAELYRLNFTANALGITIVLAVALGVFYFLRPRTPRQP
Ga0209177_104838261	3300027775	Agricultural Soil	MAETAPRSIRDAIRWGLLLAAVAVSGFRLPQTYGAFRGWRAVRFSDPSAAELYRLNLTANAVGIAIVLAVAIAVFYLLRPRI
Ga0209580_100536984	3300027842	Surface Soil	MGEITPRSTRDAIRWGSLLAAIAVTGFRLPQAYSAFRDWHAMRFSDPSAAELYRLNFTANAVGIVIILALALGVFYFLRPRTPKQP
Ga0209166_1000183014	3300027857	Surface Soil	MAEIVPRSNRDGVRWGLMLAAVAVAGFRLPSTYRSFQDWRGVRFSDPSAAEFYRLTFTANIVGIAIIFFVALGVFYFLRPRAPKQP
Ga0209465_106446042	3300027874	Tropical Forest Soil	MAEIVPRSNQGSTRDAIRWGLLLAAVAVTGFRLPGTYRNLRDWQAVRLSDPSAAELNRLNFTANAVGIVIILVVALAVFYFLRPRAPKQP
Ga0318516_105419712	3300031543	Soil	MAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALGMFYLLRPRTAQRA
Ga0318534_100387381	3300031544	Soil	AEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALGMFYLLRPRTAQRP
Ga0318542_100224293	3300031668	Soil	MAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIAIILLVALGMFYLLRPRTAQRP
Ga0307475_100034374	3300031754	Hardwood Forest Soil	LIVHGTELMAEIAPRSTRDAIRWGLLLAAVAVAGFRLPRTYGAFRDWHELRLSDPSAAELYRLNFTANAVAISIILAVALGVFYFLRPRRPKPP
Ga0318521_101536401	3300031770	Soil	MAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALG
Ga0318512_101030621	3300031846	Soil	MAEIAPRTTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALGMFYLLRPRTAQRP
Ga0318544_100040802	3300031880	Soil	MAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRAYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALGMFYLLRPRTAQRP
Ga0306923_101178673	3300031910	Soil	MAQIAPSSTRDAIRWGLLLSAVAVTGFRLPRTYGAFRDWHGVRFSDPAAAELYRTNFTANAVGMAIILVVALGVFYLLRPRRPKQRP
Ga0307479_103013361	3300031962	Hardwood Forest Soil	PGSREPGHLIVHGTELMAEIAPRSTRDAIRWGLLLAAVAVAGFRLPRTYGAFRDWHELRLSDPSAAELYRLNFTANAVAISIILAVALGVFYFLRPRRPKPP
Ga0318531_104732643	3300031981	Soil	IRWGLLLSAVAVTGFRLPRTYGAFRDWHGVRFSDPAAAELYRTNFTANAVGMAIILVVALGVFYLLRPRRPKQRP
Ga0318514_102772461	3300032066	Soil	MAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALGMFY
Ga0318524_101617702	3300032067	Soil	MAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWGEVRLSNPPAAELYRLTFTANAVAIALILLVALGMFYLLRPRTAQRP
Ga0307471_10000032316	3300032180	Hardwood Forest Soil	LISGGAKLMAETAPRSVRDAIRWGLLLSAVAVAGFRLPSTYDAFRDWHAVRLSDPSAAELYRLNFTANAVGIVIVLAVAMGAFYLLRPRATKQP
Ga0318519_100460092	3300033290	Soil	MAGEPTAEIAPRSTRDAIRWGLLLAAVAVSGFRLPRTYGAFRDWREVRLSNPPAAELYRLTFTANAVAIALILLVALGMFYLLRPRTAQRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087008

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences