NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087005

Metagenome / Metatranscriptome Family F087005

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087005
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 43 residues
Representative Sequence MDRRDQELLDKQMRRLTPPRNEGVIAVMLAAMFLVGMTLGSVL
Number of Associated Samples 75
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 81.65 %
% of genes near scaffold ends (potentially truncated) 89.09 %
% of genes from short scaffolds (< 2000 bps) 90.91 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.818 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(25.455 % of family members)
Environment Ontology (ENVO) Unclassified
(43.636 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.818 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 49.30%    β-sheet: 0.00%    Coil/Unstructured: 50.70%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF03330DPBB_1 1.82
PF08734GYD 1.82
PF00248Aldo_ket_red 0.91
PF04226Transgly_assoc 0.91
PF04107GCS2 0.91
PF11154DUF2934 0.91
PF06411HdeA 0.91
PF13358DDE_3 0.91
PF09361Phasin_2 0.91
PF13473Cupredoxin_1 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG4274Uncharacterized conserved protein, contains GYD domainFunction unknown [S] 1.82
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.91


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A71.82 %
All OrganismsrootAll Organisms28.18 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459014|G1P06HT02I6V56Not Available541Open in IMG/M
3300004633|Ga0066395_10375347Not Available796Open in IMG/M
3300005172|Ga0066683_10848673Not Available527Open in IMG/M
3300005332|Ga0066388_100183566All Organisms → cellular organisms → Bacteria → Proteobacteria2702Open in IMG/M
3300005332|Ga0066388_100305158Not Available2237Open in IMG/M
3300005332|Ga0066388_101066165Not Available1363Open in IMG/M
3300005332|Ga0066388_102948184Not Available870Open in IMG/M
3300005332|Ga0066388_103969717Not Available754Open in IMG/M
3300005332|Ga0066388_107144097Not Available561Open in IMG/M
3300005436|Ga0070713_101248586Not Available719Open in IMG/M
3300005764|Ga0066903_100499254All Organisms → cellular organisms → Bacteria2061Open in IMG/M
3300005764|Ga0066903_101125362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1450Open in IMG/M
3300005764|Ga0066903_104160563All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium774Open in IMG/M
3300005764|Ga0066903_104411913Not Available751Open in IMG/M
3300005764|Ga0066903_105883979Not Available643Open in IMG/M
3300006046|Ga0066652_100822939Not Available887Open in IMG/M
3300006052|Ga0075029_101272011Not Available516Open in IMG/M
3300006057|Ga0075026_100303202Not Available873Open in IMG/M
3300006057|Ga0075026_100723745Not Available597Open in IMG/M
3300006059|Ga0075017_100134456All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis1750Open in IMG/M
3300006755|Ga0079222_10335414Not Available1011Open in IMG/M
3300006804|Ga0079221_11349372Not Available564Open in IMG/M
3300006844|Ga0075428_101453932Not Available719Open in IMG/M
3300009792|Ga0126374_10212487Not Available1234Open in IMG/M
3300010047|Ga0126382_10440723Not Available1029Open in IMG/M
3300010048|Ga0126373_10247866Not Available1751Open in IMG/M
3300010048|Ga0126373_12348069Not Available593Open in IMG/M
3300010048|Ga0126373_12535113Not Available572Open in IMG/M
3300010358|Ga0126370_10373424All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1161Open in IMG/M
3300010358|Ga0126370_11609173Not Available622Open in IMG/M
3300010359|Ga0126376_11724519Not Available662Open in IMG/M
3300010360|Ga0126372_10523414Not Available1119Open in IMG/M
3300010361|Ga0126378_10826973All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1035Open in IMG/M
3300010366|Ga0126379_10409648All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1406Open in IMG/M
3300010366|Ga0126379_11936015Not Available692Open in IMG/M
3300010376|Ga0126381_100421430All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1865Open in IMG/M
3300010376|Ga0126381_100743031All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1406Open in IMG/M
3300010376|Ga0126381_102458793Not Available747Open in IMG/M
3300010376|Ga0126381_102722280All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium707Open in IMG/M
3300010398|Ga0126383_10487253Not Available1289Open in IMG/M
3300010398|Ga0126383_11108680Not Available881Open in IMG/M
3300012201|Ga0137365_10771273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria702Open in IMG/M
3300012285|Ga0137370_10455089Not Available780Open in IMG/M
3300012356|Ga0137371_11173790All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc3b574Open in IMG/M
3300012362|Ga0137361_11243379Not Available668Open in IMG/M
3300012948|Ga0126375_10439370Not Available955Open in IMG/M
3300012971|Ga0126369_10680160Not Available1105Open in IMG/M
3300012971|Ga0126369_11653880All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300016270|Ga0182036_11709910Not Available531Open in IMG/M
3300016270|Ga0182036_11908029Not Available504Open in IMG/M
3300016294|Ga0182041_10705344All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia felis895Open in IMG/M
3300016294|Ga0182041_12227290Not Available512Open in IMG/M
3300016319|Ga0182033_10667111Not Available908Open in IMG/M
3300016319|Ga0182033_11814102Not Available554Open in IMG/M
3300016357|Ga0182032_10147727All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1735Open in IMG/M
3300016357|Ga0182032_10305342Not Available1258Open in IMG/M
3300016357|Ga0182032_10611176Not Available908Open in IMG/M
3300016404|Ga0182037_11737779Not Available556Open in IMG/M
3300016422|Ga0182039_10030205All Organisms → cellular organisms → Bacteria → Proteobacteria3473Open in IMG/M
3300016422|Ga0182039_11972304Not Available537Open in IMG/M
3300016445|Ga0182038_10329437Not Available1258Open in IMG/M
3300016445|Ga0182038_11043234Not Available725Open in IMG/M
3300016445|Ga0182038_11471607Not Available611Open in IMG/M
3300016445|Ga0182038_11663788Not Available575Open in IMG/M
3300017970|Ga0187783_10694933All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12734Open in IMG/M
3300017970|Ga0187783_11039464Not Available590Open in IMG/M
3300017974|Ga0187777_10647506Not Available747Open in IMG/M
3300021478|Ga0210402_11991003Not Available507Open in IMG/M
3300021559|Ga0210409_10845541Not Available788Open in IMG/M
3300021560|Ga0126371_10660989Not Available1194Open in IMG/M
3300025916|Ga0207663_11240313Not Available600Open in IMG/M
3300025928|Ga0207700_10689267All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium912Open in IMG/M
3300027874|Ga0209465_10446306Not Available647Open in IMG/M
3300030916|Ga0075386_12160720All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1153Open in IMG/M
3300031231|Ga0170824_104921997Not Available597Open in IMG/M
3300031446|Ga0170820_12322639All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1029Open in IMG/M
3300031545|Ga0318541_10384280Not Available784Open in IMG/M
3300031681|Ga0318572_10456028Not Available761Open in IMG/M
3300031718|Ga0307474_10584787Not Available879Open in IMG/M
3300031724|Ga0318500_10048619Not Available1790Open in IMG/M
3300031747|Ga0318502_10397399Not Available820Open in IMG/M
3300031753|Ga0307477_10051198All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2840Open in IMG/M
3300031768|Ga0318509_10022797All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2955Open in IMG/M
3300031782|Ga0318552_10045211Not Available2072Open in IMG/M
3300031796|Ga0318576_10259151Not Available821Open in IMG/M
3300031797|Ga0318550_10649549Not Available506Open in IMG/M
3300031819|Ga0318568_10666560Not Available647Open in IMG/M
3300031833|Ga0310917_10809432Not Available632Open in IMG/M
3300031879|Ga0306919_10537343Not Available902Open in IMG/M
3300031897|Ga0318520_10107447Not Available1574Open in IMG/M
3300031912|Ga0306921_10719950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1145Open in IMG/M
3300031942|Ga0310916_11300159Not Available598Open in IMG/M
3300031945|Ga0310913_10471680All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium891Open in IMG/M
3300031945|Ga0310913_10845953Not Available644Open in IMG/M
3300031946|Ga0310910_11396394Not Available539Open in IMG/M
3300031947|Ga0310909_10074655All Organisms → cellular organisms → Bacteria → Proteobacteria2673Open in IMG/M
3300031947|Ga0310909_10205146All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1639Open in IMG/M
3300031954|Ga0306926_11704405Not Available719Open in IMG/M
3300031954|Ga0306926_13038829Not Available500Open in IMG/M
3300032001|Ga0306922_11017359Not Available854Open in IMG/M
3300032035|Ga0310911_10388618All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales807Open in IMG/M
3300032035|Ga0310911_10657121Not Available608Open in IMG/M
3300032039|Ga0318559_10149676All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1059Open in IMG/M
3300032055|Ga0318575_10252509Not Available890Open in IMG/M
3300032055|Ga0318575_10528256Not Available599Open in IMG/M
3300032059|Ga0318533_10682237All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria754Open in IMG/M
3300032064|Ga0318510_10006048Not Available3278Open in IMG/M
3300032076|Ga0306924_11065275All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2883Open in IMG/M
3300032261|Ga0306920_104022263Not Available533Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil25.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.91%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil20.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil11.82%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.64%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.64%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.73%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.73%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.82%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.82%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.82%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.91%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459014Litter degradation PV2EngineeredOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2PV_029716002170459014Switchgrass, Maize And Mischanthus LitterMDRHDQELLDKQMGRLSAPRNDGVIAVMLAVMFVVGMTIGVSAPK
Ga0066395_1037534723300004633Tropical Forest SoilMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL*
Ga0066683_1084867313300005172SoilMDRRDQELLDKQMRSLTPPRNEGFIAVLLAAMFLVGMTLGSV
Ga0066388_10018356613300005332Tropical Forest SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLVGMTLGS
Ga0066388_10030515813300005332Tropical Forest SoilMDRYDQELLDKQMRRLTQPENYGVIGVMLAAMFLVGVAIGGVV
Ga0066388_10106616533300005332Tropical Forest SoilMNRYDQELLDKQMRRLTQPENYGVIGVMLAAMFLVGVAIGGVV
Ga0066388_10294818433300005332Tropical Forest SoilMERHDRELLDKQMRKLTPPRNEGVIVVMLAVMFLVGLALGSVVSRE
Ga0066388_10396971723300005332Tropical Forest SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGITVGGLLSTHQS
Ga0066388_10714409713300005332Tropical Forest SoilMNQRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLVGIALG
Ga0070713_10124858613300005436Corn, Switchgrass And Miscanthus RhizosphereMDRRDQELLDKQMRRLGPPRNDGVIAVLLAAMFLVGMTLGSV
Ga0066903_10049925413300005764Tropical Forest SoilMDRREKELLDKQMRLLSAPRNDGVIVVMLAAMFLVGVAISGVVF
Ga0066903_10112536233300005764Tropical Forest SoilMNRRDEELLDKQMRRLTPPRHEGVIALMLAATFLVGMTLGSVLSP
Ga0066903_10416056323300005764Tropical Forest SoilDQDLLDKQMRRLDPPRNDGTIAVLLAATFLVGMAIGGVLL*
Ga0066903_10441191313300005764Tropical Forest SoilMGTSKMDRRDQDLLDKQMRRLTPPRHEGVIAVMLAAMFLVGMTLGSVLS
Ga0066903_10588397923300005764Tropical Forest SoilMDRRDQELLDKQMRRLTPPRNVGVIAVMLAAMFLVGMTLGSALSPDKS
Ga0066652_10082293913300006046SoilMDRRDQELLDKQMRRLTPPRNGGVIAVLLASMFLVGMTLGSV
Ga0075029_10127201113300006052WatershedsMDRRDQELLDKQMRRLTPPRNDGVIAMMLAAMFLVGMTLGGVLSAH
Ga0075026_10030320223300006057WatershedsMDRRDQELLNKQMRRLTPPRNEGVIAVLLAAMFLVGM
Ga0075026_10072374513300006057WatershedsMDRRDQELLDKQMRRLTPPRNDGVIVVLLVAMFLVGMTLGSVL
Ga0075017_10013445653300006059WatershedsMDRRDQELLDKQMRRLSAPRNDGVIAVMLAVMFVVGMTLGSVLSEPKT
Ga0079222_1033541423300006755Agricultural SoilMDRRDQELLDKQMRRLSPPRNNGVIVVLLAAMFLVGMTLG
Ga0079221_1134937223300006804Agricultural SoilMDRRDRELLDKQMRRLSPPRNDGVIAVMLAVMFVVGMTLGGVLSEP
Ga0075428_10145393213300006844Populus RhizosphereMGTSKMDRRDQELLDKQMRRLVPPQNHGAIAVMLAAAMFLVGMALGSVLS
Ga0126374_1021248723300009792Tropical Forest SoilMNRRDQELLDKQMRRLTPPRHEGVIALMLAAMFLIGMTF
Ga0126382_1044072323300010047Tropical Forest SoilVCENVGDKKLGTSKMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL*
Ga0126373_1024786613300010048Tropical Forest SoilMNRRDQELLNKQMRRLTPPRNEGAIAVMLAAMFLIGITVGGLL
Ga0126373_1234806913300010048Tropical Forest SoilMDRRDQELLDKQMRRLSPPRNDSVIAVMLAAMFLVGITIG
Ga0126373_1253511313300010048Tropical Forest SoilMDRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGIT
Ga0126370_1037342423300010358Tropical Forest SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGITVGGL
Ga0126370_1160917323300010358Tropical Forest SoilMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVA
Ga0126376_1172451923300010359Tropical Forest SoilMDQHDRELLDKQMRRLTQPENYGVIGVMLAVMFLVGM
Ga0126372_1052341413300010360Tropical Forest SoilMNRRDQELLDKQMRRLEAPRINDGAIAVLLAAMFL
Ga0126378_1082697313300010361Tropical Forest SoilVGDKKLGTSKMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL*
Ga0126379_1040964823300010366Tropical Forest SoilVGDKKLGTSKMDRYGEELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL*
Ga0126379_1193601523300010366Tropical Forest SoilMDRRDQELLDKQMRRLTPPRNECAIAVMLAAMFLVGMALGGVLSPRQT
Ga0126381_10042143013300010376Tropical Forest SoilMNKNGDLKMDRRDQELLDKQMGRLSPPRNDGAIAVMFAAMFLVGMALGGVLS
Ga0126381_10074303113300010376Tropical Forest SoilMNRHDQELLDKQMRRLTPPQNDGAIAVMLAAMFLI
Ga0126381_10245879333300010376Tropical Forest SoilMAAFHLEWGHSEMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGIT
Ga0126381_10272228013300010376Tropical Forest SoilRGRQKMGTSKMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL*
Ga0126383_1048725333300010398Tropical Forest SoilMNRRDQELLNKQMRRLTPPRNEGAIAVMLAAMFLIGITVGGLLSTHQSE
Ga0126383_1110868033300010398Tropical Forest SoilMGTSKMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL*
Ga0137365_1077127313300012201Vadose Zone SoilMGTLKMDRRDQELLDKQMRRLIPQRNDGVIAVLLAAMFLVGMTLGGVLS
Ga0137370_1045508913300012285Vadose Zone SoilMNTNGDIKMDRRDQELLDKQMRRLTPPRNDGVIAVLFAAMFLVGMTLGS
Ga0137371_1117379023300012356Vadose Zone SoilLDKQMRRLTPPRIDGVFAVMLAAMFLVGMTLGGVLKADDQRIIVF*
Ga0137361_1124337913300012362Vadose Zone SoilMETKMGTSKMDRRDQELLDKQMRRLVPPQNDGAIAVMLAAAMFLVGMALGSVL
Ga0126375_1043937023300012948Tropical Forest SoilMNQRDQELLDKQMRRLTPPRNEGVVALMLAAMFLFGVTLGSVLSP
Ga0126369_1068016033300012971Tropical Forest SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGITVG
Ga0126369_1165388013300012971Tropical Forest SoilMNRRDQELLDKQMRKLTPPRNEGAIAVMLAAMFLIGI
Ga0182036_1170991023300016270SoilMDRRDQELLDKQMRRLTPPRHEGVIAVMLATMFLVGIAI
Ga0182036_1190802913300016270SoilMGTKKMDRRDQELFDKQMRRLTPPRHEGVIALMLAVMFL
Ga0182041_1070534423300016294SoilMNKNGDAKMDRRDQELLDKQMRRLTPPRHEGVIAVMLAAMFLVGMTLGPVLTLPCAGRR
Ga0182041_1222729013300016294SoilMNRHHRELLDKQMRRLTPPRHEGVIALMLAAMFLVGMTLGG
Ga0182033_1066711113300016319SoilMNRHDQELLDKQMRRLTPPRNGGVIAAMLAVMFLFG
Ga0182033_1181410223300016319SoilMVRRDQELLDKQMRRLTPPRNDGAIAVMLATMFLVGMTLGSVLS
Ga0182032_1014772733300016357SoilMNRQDQELLDKQMRRLTPPQNDGAIAVMLAAMFLIGIT
Ga0182032_1030534213300016357SoilMNRHDQELLDKQMRRLTPPRNGGVIAAMLAVMFLFGMTLGSVLSPH
Ga0182032_1061117613300016357SoilMERHDRELLDKQMGKLTPPRNEGVIVVMLAVMFLVGLALGSVVSHE
Ga0182037_1173777913300016404SoilMNRHHRELLDKQMRRLTPPRHEGVIALMLAAMFLVGMTLG
Ga0182039_1003020563300016422SoilMGTSKMDRRDQELLDKQMRRLSPPRSDGAIAVLLAALFLVGMGVGGVLSTHQS
Ga0182039_1197230413300016422SoilMGTAKMDRRDRELLNKQMRVLSAPRNDGVIAVMLAAM
Ga0182038_1032943733300016445SoilMDRRDQELLDKQMRRLTPPRNEVVIAVLLASMFLVGMTLGGVLS
Ga0182038_1104323423300016445SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGITV
Ga0182038_1147160723300016445SoilMNRHDQELLDKQMRRLSPPRNEGVVVVMLATMFLFGMALGSVMS
Ga0182038_1166378823300016445SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLVGMALGS
Ga0187783_1069493313300017970Tropical PeatlandMNRYDQELLDKQMRRLGPPRNDGANAVLLVATFLVGAALGGV
Ga0187783_1103946423300017970Tropical PeatlandMDQYDQELLDKEMRRLTPPRNDGAIAGLLVVTFLVGAAFGGVLSAR
Ga0187777_1064750623300017974Tropical PeatlandMDQYDQELLDKEMRRLTPPRNDGAIAGLLVVTFLVGAAFGGVLSAH
Ga0210402_1199100333300021478SoilRRDQELLDKQMRRLTPPRNDGVIVVMLAVMFDAACVT
Ga0210409_1084554123300021559SoilMDRRDWELLDKQMRRLTPPRNDGAIAMMLAAMFLLGMTLGGVLP
Ga0126371_1066098933300021560Tropical Forest SoilMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIG
Ga0207663_1124031313300025916Corn, Switchgrass And Miscanthus RhizosphereMGTSKMDRRDQELLDKQMRRLVPPQNDGAIAVMLAAAMF
Ga0207700_1068926713300025928Corn, Switchgrass And Miscanthus RhizosphereMDRRDQELLDKQMRRLGPPRNDGVIAVLLAAMFLVGMTLGSVL
Ga0209465_1044630613300027874Tropical Forest SoilMDRYGQELLDKQMRRLEPPENYGAIAVLLAATFLVGVAIGSVL
Ga0075386_1216072033300030916SoilMDRRDQKLLDKQMRRLTPPRNDGVFAVLLAAVFLVGMTLGSVL
Ga0170824_10492199723300031231Forest SoilMDRRDQELLDKQMRRLTPPRNDGVIAVLLAAMFLVGMTLGGVLS
Ga0170820_1232263923300031446Forest SoilMDRRDQELLDKQMRRLSPPRNDGVIAVLLAVMFLVGMT
Ga0318541_1038428013300031545SoilMDRRDQELLDKQMRRLTPPRNEGVVALMLAAMFLVGVTLG
Ga0318572_1045602813300031681SoilMDRRDQELLDKQMRRLTPPRNEGVIAVMLAAMFLVGMTLGSVL
Ga0307474_1058478733300031718Hardwood Forest SoilVAAPRELLDKQMRRLTPPRNDGVIAVMLAAMFLVGM
Ga0318500_1004861923300031724SoilMNRRDQELLNKQMRRLTPPRNEGAIAVMLAAMFLI
Ga0318502_1039739913300031747SoilMDRRDQELLDKQMRRLTPPRHEGVIALMLAAMFLVGMTLG
Ga0307477_1005119853300031753Hardwood Forest SoilMDRRDQELLDKQMRRLTPPRNEGVIAVLLAAMFLVGMTLGGVLL
Ga0318509_1002279763300031768SoilMNRRDQELLDKQMARLTPPRNEGAIALMLAAMFLV
Ga0318552_1004521143300031782SoilMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGITVGGLLSTH
Ga0318576_1025915133300031796SoilMHRYDWELLDKQTRRLSPPRNDGVIAVMLAAMFLVGIAIG
Ga0318550_1064954913300031797SoilMNRRDQELLDKQMRRLETPRNDGAIAVLLAAMFVVGMTLGS
Ga0318568_1066656013300031819SoilMDRRDQELLDKQMRRLTPPRHEGVIAVMLATMFLVGIAIG
Ga0310917_1080943223300031833SoilMDRRDQELLDKQMRRLTPPRNESVVALMLAAMFLVGVTLGSVLSP
Ga0306919_1053734313300031879SoilMDRRDQELLDKQMRRLTPPRNDGAIAVMVAAMFLIGMTVGS
Ga0318520_1010744733300031897SoilMDRRDQELLDKQMRRLSPPRNDGAVAVMLAAMFLVGITIGSV
Ga0306921_1071995013300031912SoilMGTSKMNRRDQELLDKQMRRLTPPRNEGAIAVMLAAMFLIGIT
Ga0310916_1130015913300031942SoilMKQNGDVKMNRRDQELLDKQMARLTPPGNEGAIALMLAAMFLVGVTLGGVLS
Ga0310913_1047168033300031945SoilMDRRDQELLDKQMRRLTPPRHEGVIALMLAAMFLVGIT
Ga0310913_1084595313300031945SoilMDRRDQELLDKQMRRLSPPRNDSVIAVMLAAMFLVGITIGSVLSPAHQS
Ga0310910_1139639413300031946SoilMDRRDQELLDKQMRRLTPPRHEGVIAVMLATMFLVGIAIGSVLSPH
Ga0310909_1007465513300031947SoilMGTSKMDRRDQELLDKQMRRLSPPRSDGAIAVLLAALFLVGM
Ga0310909_1020514613300031947SoilMDRRDQELLDKQMRRLTPPRNEVVIAVLLASMFLVG
Ga0306926_1170440513300031954SoilMNRHHRELLDKQMRRLTPPRHEGVIALMLAAMFLVGMTL
Ga0306926_1303882923300031954SoilMDRRDQELLDKQMRRLTPPRNEGVIAVLLASMFLVGM
Ga0306922_1101735923300032001SoilMNRHDRELLDKQMRRLTPPRNEGAIAVMLAAMFLIG
Ga0310911_1016265543300032035SoilMGTSKMNRRDQELLDKQMRRLTPPQNEGAIAVMLAA
Ga0310911_1038861813300032035SoilMDRRDQELLDKQMRRLTPPRHEGVIAVMLATMFLVGIA
Ga0310911_1065712113300032035SoilMDRHDRKLLDKQMGKLTPPRNEGVIVVMLAVMFLVGLALGSVVSR
Ga0318559_1014967633300032039SoilMNRRDQELLDKQMRRLTPPRNEGAITVMLAAMFLIGITVGGL
Ga0318575_1025250923300032055SoilMDRRDQELLDKQMRRLTPPRNESVVALMLAAMFLVGVT
Ga0318575_1052825613300032055SoilMDRYDRELLNKQMRRLSAPRNDGVIAVLLAVMFLVGVTLGGVLSE
Ga0318533_1068223723300032059SoilMNKNGDAKMDRRDQELLDKQMRRLTPSRHEGVIAVMLAAMFLVGMTLGSVLSP
Ga0318510_1000604863300032064SoilMNRRDQELLNKQMRRLTPPRNEGAIAVMLAAMFLIAITVGGLL
Ga0306924_1106527523300032076SoilMNRHDQELLDKQMRRLTPPQNDGAIAVMLAAMFLIGITVGGLLSTH
Ga0306920_10402226323300032261SoilMNKNGDVKMDRRDQELLDKQMRRLTPPRHEGVIALMLAAMFLVGVTLGSVL


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