Metagenome / Metatranscriptome Family F086994

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086994
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	75 residues
Representative Sequence	IEADEGAHLALEDDAAFEALPHPLAQKPISDAAQSALAAQGVAPGATTFDAAEAVARVHPLLRHRVF
Number of Associated Samples	86
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.91 %
% of genes near scaffold ends (potentially truncated)	86.36 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (19.091 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.42% β-sheet: 0.00% Coil/Unstructured: 71.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03330	DPBB_1	5.45
PF13378	MR_MLE_C	1.82
PF01464	SLT	1.82
PF01850	PIN	1.82
PF03237	Terminase_6N	0.91
PF09370	PEP_hydrolase	0.91
PF13177	DNA_pol3_delta2	0.91
PF01596	Methyltransf_3	0.91
PF00753	Lactamase_B	0.91
PF01590	GAF	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.91
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.91 %
Unclassified	root	N/A	28.18 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	63.64 %
Unclassified	root	N/A	28.18 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.09 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Spiralia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Gnathifera	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Rotifera	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Eurotatoria	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Bdelloidea	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Philodinida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Philodinida	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Philodinidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Philodinida → Philodinidae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Didymodactylos	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Philodinida → Philodinidae → Didymodactylos	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.09 %
Didymodactylos carnosus	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Philodinida → Philodinidae → Didymodactylos → Didymodactylos carnosus	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001151\|JGI12713J13577_1017235	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300001356\|JGI12269J14319_10002073	All Organisms → cellular organisms → Bacteria	19563	Open in IMG/M
3300002245\|JGIcombinedJ26739_100271872	All Organisms → cellular organisms → Bacteria → Acidobacteria	1581	Open in IMG/M
3300002245\|JGIcombinedJ26739_100978300	Not Available	730	Open in IMG/M
3300003224\|JGI26344J46810_1018949	Not Available	576	Open in IMG/M
3300003352\|JGI26345J50200_1003792	All Organisms → cellular organisms → Bacteria → Acidobacteria	1437	Open in IMG/M
3300003370\|JGI26337J50220_1016394	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300004080\|Ga0062385_10354928	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300004080\|Ga0062385_11097592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300004082\|Ga0062384_100134137	All Organisms → cellular organisms → Bacteria → Acidobacteria	1380	Open in IMG/M
3300004082\|Ga0062384_100186473	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300004082\|Ga0062384_100709098	Not Available	694	Open in IMG/M
3300004082\|Ga0062384_100909484	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300004091\|Ga0062387_100790236	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300004091\|Ga0062387_100974310	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	648	Open in IMG/M
3300004092\|Ga0062389_100359361	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1557	Open in IMG/M
3300004121\|Ga0058882_1385326	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300004635\|Ga0062388_100349559	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1260	Open in IMG/M
3300004635\|Ga0062388_102684334	Not Available	524	Open in IMG/M
3300005591\|Ga0070761_10578261	Not Available	697	Open in IMG/M
3300005602\|Ga0070762_10574803	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300005610\|Ga0070763_10392463	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300005712\|Ga0070764_10659279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	642	Open in IMG/M
3300005898\|Ga0075276_10024656	All Organisms → cellular organisms → Bacteria → Acidobacteria	1258	Open in IMG/M
3300005921\|Ga0070766_11300557	Not Available	504	Open in IMG/M
3300005950\|Ga0066787_10033074	Not Available	942	Open in IMG/M
3300006755\|Ga0079222_11161106	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300006806\|Ga0079220_10088185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1576	Open in IMG/M
3300007982\|Ga0102924_1030584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3562	Open in IMG/M
3300009520\|Ga0116214_1210866	Not Available	732	Open in IMG/M
3300010373\|Ga0134128_10199457	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Philodinida → Philodinidae → Didymodactylos → Didymodactylos carnosus	2253	Open in IMG/M
3300011120\|Ga0150983_15633419	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300012964\|Ga0153916_11907044	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300014159\|Ga0181530_10032839	All Organisms → cellular organisms → Bacteria → Acidobacteria	3660	Open in IMG/M
3300014162\|Ga0181538_10355106	Not Available	787	Open in IMG/M
3300014165\|Ga0181523_10761343	Not Available	528	Open in IMG/M
3300014501\|Ga0182024_11623849	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300014501\|Ga0182024_11896918	All Organisms → cellular organisms → Bacteria → Acidobacteria	663	Open in IMG/M
3300017930\|Ga0187825_10072497	All Organisms → cellular organisms → Bacteria → Acidobacteria	1177	Open in IMG/M
3300017933\|Ga0187801_10347337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300017934\|Ga0187803_10265936	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300017936\|Ga0187821_10402987	Not Available	560	Open in IMG/M
3300017943\|Ga0187819_10053088	All Organisms → cellular organisms → Bacteria → Acidobacteria	2406	Open in IMG/M
3300018006\|Ga0187804_10516446	Not Available	538	Open in IMG/M
3300018062\|Ga0187784_10557463	Not Available	922	Open in IMG/M
3300018086\|Ga0187769_10815117	All Organisms → cellular organisms → Bacteria → Acidobacteria	706	Open in IMG/M
3300020581\|Ga0210399_10468149	All Organisms → cellular organisms → Bacteria → Acidobacteria	1049	Open in IMG/M
3300021088\|Ga0210404_10430522	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300021180\|Ga0210396_10491384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1074	Open in IMG/M
3300021181\|Ga0210388_10298199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1416	Open in IMG/M
3300021401\|Ga0210393_10183575	All Organisms → cellular organisms → Bacteria → Acidobacteria	1688	Open in IMG/M
3300021402\|Ga0210385_10666721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	795	Open in IMG/M
3300021403\|Ga0210397_10625960	All Organisms → cellular organisms → Bacteria → Acidobacteria	824	Open in IMG/M
3300021403\|Ga0210397_10809968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300021403\|Ga0210397_11035021	Not Available	637	Open in IMG/M
3300021405\|Ga0210387_10054412	All Organisms → cellular organisms → Bacteria	3228	Open in IMG/M
3300021406\|Ga0210386_11119416	Not Available	668	Open in IMG/M
3300021406\|Ga0210386_11146889	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300021407\|Ga0210383_10351671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1270	Open in IMG/M
3300021420\|Ga0210394_11402051	Not Available	594	Open in IMG/M
3300021476\|Ga0187846_10227189	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300021478\|Ga0210402_11004776	Not Available	761	Open in IMG/M
3300021479\|Ga0210410_11358606	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300021559\|Ga0210409_10128708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	2326	Open in IMG/M
3300021559\|Ga0210409_10442616	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1159	Open in IMG/M
3300022557\|Ga0212123_10025739	All Organisms → cellular organisms → Bacteria → Acidobacteria	6318	Open in IMG/M
3300023259\|Ga0224551_1031214	Not Available	918	Open in IMG/M
3300025929\|Ga0207664_11267138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	656	Open in IMG/M
3300026109\|Ga0208774_1015555	All Organisms → cellular organisms → Bacteria → Acidobacteria	1212	Open in IMG/M
3300027641\|Ga0208827_1188757	Not Available	553	Open in IMG/M
3300027729\|Ga0209248_10114680	Not Available	810	Open in IMG/M
3300027729\|Ga0209248_10193436	Not Available	601	Open in IMG/M
3300027767\|Ga0209655_10065880	All Organisms → cellular organisms → Bacteria → Acidobacteria	1206	Open in IMG/M
3300027767\|Ga0209655_10300025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300027783\|Ga0209448_10213781	Not Available	639	Open in IMG/M
3300027795\|Ga0209139_10279082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	589	Open in IMG/M
3300027829\|Ga0209773_10102031	All Organisms → cellular organisms → Bacteria → Acidobacteria	1185	Open in IMG/M
3300027884\|Ga0209275_10426096	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300027986\|Ga0209168_10160347	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300028795\|Ga0302227_10086958	All Organisms → cellular organisms → Bacteria → Acidobacteria	1321	Open in IMG/M
3300028801\|Ga0302226_10373566	Not Available	598	Open in IMG/M
3300029993\|Ga0302304_10153878	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300029993\|Ga0302304_10198808	Not Available	745	Open in IMG/M
3300030399\|Ga0311353_11027977	Not Available	688	Open in IMG/M
3300030617\|Ga0311356_11595840	Not Available	587	Open in IMG/M
3300030617\|Ga0311356_11874747	Not Available	532	Open in IMG/M
3300030746\|Ga0302312_10171218	All Organisms → cellular organisms → Bacteria → Acidobacteria	847	Open in IMG/M
3300031128\|Ga0170823_13761648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	532	Open in IMG/M
3300031250\|Ga0265331_10042083	All Organisms → cellular organisms → Bacteria → Acidobacteria	2217	Open in IMG/M
3300031525\|Ga0302326_10355005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2303	Open in IMG/M
3300031708\|Ga0310686_105538284	All Organisms → cellular organisms → Bacteria → Acidobacteria	718	Open in IMG/M
3300031708\|Ga0310686_106718687	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1499	Open in IMG/M
3300031708\|Ga0310686_108687175	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300031708\|Ga0310686_115461941	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300031708\|Ga0310686_119563958	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	526	Open in IMG/M
3300031715\|Ga0307476_10617497	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300031715\|Ga0307476_11309713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300031754\|Ga0307475_10395580	Not Available	1110	Open in IMG/M
3300031754\|Ga0307475_11488641	Not Available	520	Open in IMG/M
3300031823\|Ga0307478_11114014	Not Available	658	Open in IMG/M
3300031962\|Ga0307479_10198648	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1975	Open in IMG/M
3300031962\|Ga0307479_11190067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	726	Open in IMG/M
3300032001\|Ga0306922_11538804	All Organisms → cellular organisms → Bacteria → Acidobacteria	664	Open in IMG/M
3300032805\|Ga0335078_12134801	Not Available	594	Open in IMG/M
3300032828\|Ga0335080_10745898	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300032895\|Ga0335074_10465151	All Organisms → cellular organisms → Bacteria → Acidobacteria	1333	Open in IMG/M
3300032895\|Ga0335074_10622817	All Organisms → cellular organisms → Bacteria → Acidobacteria	1068	Open in IMG/M
3300032896\|Ga0335075_10088757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	4103	Open in IMG/M
3300033134\|Ga0335073_10335799	All Organisms → cellular organisms → Bacteria → Acidobacteria	1797	Open in IMG/M
3300034199\|Ga0370514_111999	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.09%
Aquatic	Environmental → Aquatic	30.00%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.09%
Freshwater	Environmental → Aquatic → Freshwater	28.18%
Peat	Environmental → Terrestrial → Peat	9.09%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Cave	Environmental → Terrestrial → Cave	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	28.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.09%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.09%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.09%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.45%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.73%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	19.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.36%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.18%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.73%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.82%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.91%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005898	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026109	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12713J13577_10172351	3300001151	Forest Soil	VEADEGAHLALEDDAAFEALPHPLAQKPISQSTRDALASHDVPYGATTFDVAEAVGRAHPLLRHSVF*
JGI12269J14319_1000207323	3300001356	Peatlands Soil	GFRPAPTTDDAEQRDATPILVLIEADEGVHLSLEDEPAFEPFPHPLAQKPISDAAQAALAPHGVAPGATTFDAAEALARVHPLLRHRVF*
JGIcombinedJ26739_1002718721	3300002245	Forest Soil	LALEDDAAFESLPHPLAQKPISEAAQTALAAYGVAPGATTFDAAEAVARVHPLLRHRVF*
JGIcombinedJ26739_1009783001	3300002245	Forest Soil	VLIDADEGVHLALDDDAAFEALPHPFASKAISHAAHEALASHGVTPGSTTFDAAEALARAHPLLRPRVF*
JGI26344J46810_10189491	3300003224	Bog Forest Soil	AIDEPDSATMALPQTAQILALIEADEGAHLALEDDADFQALPHPLAQRPISPQAQAALAAYGVAPGATTFDATEMVARVHPLLRHRVX*
JGI26345J50200_10037921	3300003352	Bog Forest Soil	MALPETAQILALIEADEGAHLALEDDAAFQALPHPLAQRPISPEAQAALAAYGVAPGATTFDAAEMVARVHPLLRHRVF*
JGI26337J50220_10163941	3300003370	Bog Forest Soil	ALEDDAEFQALPYPLAQRPISPAAQEALAAYGVAPGATTFDAAEAVARFHPLLRHRVF*
Ga0062385_103549282	3300004080	Bog Forest Soil	DADAKILVLIEADEGVHLALESESAFEALPHPLGQKPISDAAQSALARHGVAPGATTFDAAEALARVHPLLRHRVF*
Ga0062385_110975921	3300004080	Bog Forest Soil	WLALDGAMPARDATRILVLIEADEGAHLALEDEPAFEALPHSLGQKPISNTAQAALAAHGVARGATTFDVAETVARVHPLLRHLVF*
Ga0062384_1001341371	3300004082	Bog Forest Soil	PDDSARILVLVEADEGAHLALEDDARFEALPHPLVQKPISHAARAALAAHDIPYGATTFDVAEAVSRAHPLLRHRVF*
Ga0062384_1001864732	3300004082	Bog Forest Soil	MALPETAQILALIEADQGAHLALEDDAEFQALPYPLAQRPISPAAQEALAAYGVAPGATTFDAAEAVARFHPLLRHRVF*
Ga0062384_1007090981	3300004082	Bog Forest Soil	MAVPATAQILALIEADEGAHLALEDDADFQALPHPLSQRPIPAEVQAALAAYGVLPGATTFDAAEVVARVHPLLRHRVF*
Ga0062384_1009094841	3300004082	Bog Forest Soil	TAQILALIEADEGAHLALEDDAEFQALPHPLAQRPISQAAQAALVAYGVAPGATTFDAAEAVAQFHPLLRHRVF*
Ga0062387_1007902362	3300004091	Bog Forest Soil	GDTRVLVLIEADEGVHLSLDDDAAFEALPHPLAPKSISDSAQTALAAHGVTPGTTMFEATEIISRAHPLLRHRVF*
Ga0062387_1009743102	3300004091	Bog Forest Soil	NGEPVPAICESDASEMAVPATAQILALIEADEGAHLALEDDADFQALPHPLAQRPIPPEVQAALASYGVTPNATTFDAAEAVAKFHPLLRHRVF*
Ga0062389_1003593611	3300004092	Bog Forest Soil	VLIEADEGAHLALEDDAAFEALPHPLAQKPISEAAQTALATHGVATGATMFDAAEAIARVHPLLRHRVF*
Ga0058882_13853261	3300004121	Forest Soil	PDSSAMALAETTQVLALIEADEGAHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF*
Ga0062388_1003495591	3300004635	Bog Forest Soil	ALSEAPDASSPILALIEADEGTHLALEDDAAFEALPHPLAQKPISDAAQTVLAAHGIAPGATTFDVAEAVARAHPLLRHRVF*
Ga0062388_1026843342	3300004635	Bog Forest Soil	DEGAHLALEDDAAFEALPHPLAQRPISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHRVF*
Ga0070761_105782612	3300005591	Soil	HLALEDDAAFEALPHPLAQKPISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHRVF
Ga0070762_105748032	3300005602	Soil	LALVPNDEPVPAIGEPDSSAMALAETAQVLALIEADEGAHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF*
Ga0070763_103924632	3300005610	Soil	LVPNGEPVPAIGEPDSSARALPETAQILALIEADEGAHLALEADADFQALPHPLAQRAIPQVAQEALAAYGVAPGATTFDATEAVARFHPLLRHRVF*
Ga0070764_106592792	3300005712	Soil	SPHDAQPSDATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAYGVAPGSTTFDAAEAIARAHPLLRPRVF*
Ga0075276_100246563	3300005898	Rice Paddy Soil	ILLLVEADEGAHLALEDDPAFEPLPHPLAAKAISETAQKALAQLGVSNGATTFDVAEALARFHPLLRHRVF*
Ga0070766_113005571	3300005921	Soil	EADEGAHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF*
Ga0066787_100330743	3300005950	Soil	LIEGDEGAHLALEDDAAFEALPHPLAQKPISEAAQAALAAHGVVTGATMFDAAETVARVHPLLRHRVF*
Ga0079222_111611062	3300006755	Agricultural Soil	EDDPSFEALPHPRSQKAISDGAQAALAVHGVRTGASTFEATEIVARVHPLLRHRVF*
Ga0079220_100881851	3300006806	Agricultural Soil	DEGTHGGLEDDPSFEVLPHPLSQKAISDGAQAALAVHGVKTGASTFEATEIVARVHPLLRHRVF*
Ga0102924_10305841	3300007982	Iron-Sulfur Acid Spring	GAHLALEDDTAFEALPHPLAQKPISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHRVF*
Ga0116214_12108661	3300009520	Peatlands Soil	LIEADEGTHLTLEDDAAFEALPHPLGQKSISDAAQAALASYGIAPGATTFDVAEAVARAHPLL
Ga0134128_101994574	3300010373	Terrestrial Soil	AASSRRILVLIEADEGVHLSLDDDPAFEALPHPLAQKSISPAAQSALAPHGVAPGATTFDAMETLARVHPLLRHRVF*
Ga0150983_156334192	3300011120	Forest Soil	QVLALIEADEGAHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF*
Ga0153916_119070441	3300012964	Freshwater Wetlands	GVHLSLEDESAFEALPHPLAQKPISDAAHAALAPHGVAPGATTFDAAEAVARVHPLLRHRVF*
Ga0181530_100328395	3300014159	Bog	MPILVLVEGDEGAHLGLEDEPAFEALPHPPAQKAISPAAQAALAVHGVAPGATTFDAAEAVARIHPLLRHRVF*
Ga0181538_103551062	3300014162	Bog	MPILVLVEGDEGAHLGLEDEPAFEALPHPLAQKAISPAAQAALAVHGVAPGATTFDAAEAVARIHPLLRHRVF*
Ga0181523_107613431	3300014165	Bog	VEGDEGAHLGLEDEPAFEALPHPPAQKAISPAAQAALAVHGVAPGATTFDAAEAVARIHPLLRHRVF*
Ga0182024_116238492	3300014501	Permafrost	LVEGDEGAHLALEDEPAFEALPHPLAQKAISPAAQAALAVHGVAPGATTFDAAEAVARIHPLLRHRVF*
Ga0182024_118969182	3300014501	Permafrost	LALEDDVAFEALPHPLGQNPISETAQTALAAYGVAPGATTFDAAEAVATAHPLLRHRVF*
Ga0187825_100724972	3300017930	Freshwater Sediment	NAVTRILVLIEADEGVHLSLEDEPAFEPLPHPLARKPISAAAQAALAPHGVAPGATTFDAAEALARIHPLLKHRVF
Ga0187801_103473371	3300017933	Freshwater Sediment	QTTGDPSMPRADTKILVLIEADEGVHLSLEDEPAFEPLTHPLAQKPLSPTVQVALEPHGVAPGATTFDAAETIGRIHPLLRHRVF
Ga0187803_102659361	3300017934	Freshwater Sediment	ALIEADEGAHLVLEDDSSFEALPHPLSQLPISDATQAALAQHGVAPGATTFDASEAVARAHPLLRHRVF
Ga0187821_104029872	3300017936	Freshwater Sediment	LLPQAVAEGECPERHDSSVGVTRDSAIRILVLIEADEGVHLSLDDDPAFEPLPHPLAQKPISPAAQSALAPHGVPPDATTFDAAEALARVHPLLRHRVF
Ga0187819_100530885	3300017943	Freshwater Sediment	IEADEGVHLSLEDEPAFEPLTHPLAQKPLSPTVQVALEPHGVAPGATTFDAAETIGRIHPLLRHRVF
Ga0187804_105164462	3300018006	Freshwater Sediment	LVLIEADEGVHLALEDESAFEALPHPLAQKPISDAAHAALAPHGVAPGATTFDAAEAFARVHPLLRHRVF
Ga0187784_105574631	3300018062	Tropical Peatland	PRNDNAGEATVEGEVRILVLIEADEGVHLSLEDEPAFEALPHPLAQKPISDAAQAALAPHGVAPGATTFDAAEILARIHPLLRHRVF
Ga0187769_108151171	3300018086	Tropical Peatland	MGSSGSASADTPILVLVEADEGVHLALENDTSFTALPHPLAEKPIPENALAALAGHGVNSGATTFDVATALSRVHPLLRHRVF
Ga0210399_104681491	3300020581	Soil	MALPESAQILALIEADEGGHLALEDDAEFQALPHPLAQRAISQVAQEALAAYGVAPGATTFDATEAAARFHPLLRHRVF
Ga0210404_104305222	3300021088	Soil	LIEADEGAHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF
Ga0210396_104913842	3300021180	Soil	ATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEALARAHPLLRPRVF
Ga0210388_102981992	3300021181	Soil	MALAETAQILALIEADEGAHLALEDDADFQALPHPLAQRAIPQAAQHALATYGVTPGATTFDAAETVAKFHPLLRHRVF
Ga0210393_101835754	3300021401	Soil	ADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF
Ga0210385_106667212	3300021402	Soil	DAARIVPDAGAHTSPHDAQPSDATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAYGVAPGSTTFDAAEAIARAHPLLRPRVF
Ga0210397_106259601	3300021403	Soil	AHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRV
Ga0210397_108099682	3300021403	Soil	AHDAQPSDATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEAIARAHPLLRPRVF
Ga0210397_110350211	3300021403	Soil	AQILALIEADEGAHLALEDDAEFQALPHPLAQRAISPAAQEALAAYGVAPGATMFDASELVARVHPLLRHRVF
Ga0210387_100544128	3300021405	Soil	DEGAHLALEADADFRALPHPLAQRAIPQVAQEALAAYGVAPGATTFDAAEAVARFHPLLRHRVF
Ga0210386_111194162	3300021406	Soil	QPTNATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEAIARAHPLLRPRVF
Ga0210386_111468891	3300021406	Soil	HEPILVLVEGDEGAHLALEDDPAFEVLPHPLGKKAISGSSQAALAPLGVAPGATTFDVAETVARIHPLLRHRVF
Ga0210383_103516712	3300021407	Soil	MALAETAQILALIEADEGAHLALEDDADFQALPHPLAQRAIPQAAQHALATYGVAPGATTFDAAEAVAKFHPLLRHRVF
Ga0210394_114020511	3300021420	Soil	EGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEALARAHPLLRPRVF
Ga0187846_102271891	3300021476	Biofilm	FEALPHPLSPKPLSDRAGKALATHGVQAGATTFDATEALGCLHPLLRHRVF
Ga0210402_110047762	3300021478	Soil	LVPSGEPVPAIDEPDSTAMALPATAQILALIEADEGAHLALEDDAEFQALPHPLAQRPIPQAVQAALAAYGVTPGATTFDATELVARVHPLLRHRVF
Ga0210410_113586061	3300021479	Soil	EGVHLALEDDDAFEALPHPMSQLPISESAQAALARYGVAPGATTFDASEAIARLHPLLRHRIF
Ga0210409_101287083	3300021559	Soil	MRIIVLVDADEGVHLVLDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEAIARAHPLLRPRVF
Ga0210409_104426161	3300021559	Soil	QPSDATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEALARAHPLLRPRVF
Ga0212123_100257391	3300022557	Iron-Sulfur Acid Spring	GAHLALEDDTAFEALPHPLAQKPISQSARDALASHDVPYGATTFDVAEAVGRAHPLLRHRVF
Ga0224551_10312143	3300023259	Soil	GAHLALEDDVAFEALPHPLAQKPISETAQTALAAHGVVPGATTFDAAEAVARVHPLLRHRVF
Ga0207664_112671381	3300025929	Agricultural Soil	SAMLDVGADALAHDAQPPATTRIVVLIDADEGVHLALDDDDAFEALPHPFAPKAISHAAHEALAAHGVTPGSTTFDAAEAIARAHPLLRPRVF
Ga0208774_10155553	3300026109	Rice Paddy Soil	LEDDPAFEPLPHPLAAKAISETAQKALAQLGVSNGATTFDVAEALARFHPLLRHRVF
Ga0208827_11887571	3300027641	Peatlands Soil	TTETFSPGGDATRILVLIEADEGVHLSLEDEPAFDALPHPLAQKPISDAAQSALAPHGVAPGATMFDAAEALARIHPLLRHRVF
Ga0209248_101146801	3300027729	Bog Forest Soil	VPAIGELDSAAMALPETAQILALIEADEGAHLALEDDGDFQALPHPLAQRPISPAVQQALAAYGVAPGATTFDATELVARVHPLLRHRVF
Ga0209248_101934361	3300027729	Bog Forest Soil	LVLIEADEGVHLALEGELAFEALPHPLAQKPISDAAQAALAPHGVAPGATTFDAAEAVARIHPLLRHRVF
Ga0209655_100658801	3300027767	Bog Forest Soil	IEADEGAHLALEDDAAFEALPHPLAQKPISEAAQTALAAYGVAPGATTFDVAEAVATAHPLLRHRVF
Ga0209655_103000252	3300027767	Bog Forest Soil	NDAREVQGAASSAPTEETATTLDADAKILVLIEADEGVHLSLESEPAFEALPHPLAQKPISDAAQSALAPHGVAPGATTFDAAEALARVHPLLRHRVF
Ga0209448_102137811	3300027783	Bog Forest Soil	ETAQILALIEADEGAHLALEDDAAFQALPHPLAQRPISPAVQQALAAYGVAPGATTFDATELVARVHPLLRHRVF
Ga0209139_102790822	3300027795	Bog Forest Soil	HLALEDDPAFEALPHPLAQKPISDAAHGVGPGASTFDAAEAVTRIHPLLRHRVF
Ga0209773_101020313	3300027829	Bog Forest Soil	ALVPNGEPVPAICESDASEMAVPATAQILALIEADEGAHLALEDDADFQALPHPLAQRPIPPEVQVALASYGVTPNATTFDAAEAVAKFHPLLRHRVF
Ga0209275_104260962	3300027884	Soil	LALVPNDEPVPAIGEPDSSAMALAETAQVLALIEADEGAHLALEDDADFQALPHPLAQRPISPQAQTALAAYGVTPNATTFDAAEAVARFHPLLRHRVF
Ga0209168_101603472	3300027986	Surface Soil	VEQGISIDGLAESARILVLVEADEGTHGGLEDDPSFEALPHPLSQKAISDGAQAALAVHGVRTGASTFEATEIVARVHPLLRHRVF
Ga0302227_100869581	3300028795	Palsa	SHWIALEPTPAILLVVDADEGAHLALEDDPAFEALPHPLAQKPISETAQAALAAHGVAGGTSTFDAAEAAARIHPLLRHRVF
Ga0302226_103735661	3300028801	Palsa	RILVLVEADEGAHLALEGDARFEALPHPLVQKPISHAARAAFSAHDIPYGATTFDVAEAVSRAHPLLRHRVF
Ga0302304_101538782	3300029993	Palsa	DAKILVLIEADEGVHLSLESEPAFEALPHPLAQKPISDAAQSALAPHGVAPGATTFDAAEVMARVHPLLRHRVF
Ga0302304_101988081	3300029993	Palsa	ALGQAAPGDATGHFDPDEVTPILVLIEADEGAHLALEDDAAFEALPHPLGQKPISEAAQTALAAHGVATGATMFDAVEAVARVHPLLRHRVF
Ga0311353_110279771	3300030399	Palsa	ILVLIEADEGAHLALEDDAAFEALPHPLGQKPISEAAQTALAAHGVATGATMFDAVEAVARVHPLLRHRVF
Ga0311356_115958402	3300030617	Palsa	ATDGALQIATNGALKEDAKILVLVEADEGAHLAFEDDAACEPLPHPLAQKPISDAAQSTLACHGVPPGATTFDAAEALARVHPLLRHRVF
Ga0311356_118747471	3300030617	Palsa	LEDDAAFEALPHPLGQKPISEAAQTALAAHGVATGATMFDAVEAVARVHPLLRHRVF
Ga0302312_101712181	3300030746	Palsa	DEGAHLALEDDPAFEALPHPLAQKPISETAQAALAAHGVAGGTSTFDAAEAAARIHPLLRHRVF
Ga0170823_137616481	3300031128	Forest Soil	LIYFSFWLALSDGHDAMASRELADATRIVVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEVIARAHPLLRPRVF
Ga0265331_100420834	3300031250	Rhizosphere	GAHLALEDEPAFEGLPHPLAQKPISAAAQSALAAHGLAPGATTFDATEAVARVHPLLRHRVF
Ga0302326_103550052	3300031525	Palsa	VLVEADEGVHLALEDEPTFEALPHPLSQKPISDSAQAALAAHGVAPGATTFDAAEAVARIHPLLRHRVF
Ga0310686_1055382842	3300031708	Soil	IEADEGAHLALEDDAAFEALPHPLAQKPISDAAQSALAAQGVAPGATTFDAAEAVARVHPLLRHRVF
Ga0310686_1067186873	3300031708	Soil	MALAETAQILALIEADEGAHLALDDDSEFEALPHPLAQRAIPQAAQQALAAYGVVPGATTFDATELVARVHPLLRHRVF
Ga0310686_1086871752	3300031708	Soil	GAHLALEDDAEFQALPYPLAQRPISPAAQEALAAYGVAPGATTFDAAEAVARFHPLLRHRVF
Ga0310686_1154619411	3300031708	Soil	GAHLALEDDAEFQALPHPLAQRPISLEAQTALAAYGVTSGATTFDAAEAVARFHPLLRHRVF
Ga0310686_1195639582	3300031708	Soil	CCAPTGENTPPLHADTKILVLIEADEGVHLALESEPTFEALPHPLAQKPISDAAQSALAPHGVAPGATTFDAAEAVARVHPLLRHRVF
Ga0307476_106174973	3300031715	Hardwood Forest Soil	SRELAATTRILVLVDADEGVHLALNDDAAFEALPHPFAPKAISRPAHEALAAHGVTPGATTFDAAEAVARAHPLLRPRVF
Ga0307476_113097131	3300031715	Hardwood Forest Soil	MPIIVLVEGDEGAHLALEDDAAFEALPHPLAQKPITQTARAALASHDVPYGATTFDVAEAMGRAHPLLRHRVF
Ga0307475_103955802	3300031754	Hardwood Forest Soil	THANEDPIASRELVATTRILVLVDADEGVHLALDDDAAFEALPHPFAPKAISHTAHEALAAHGVTPGATTFDAAEAVARAHPLLRPRVF
Ga0307475_114886411	3300031754	Hardwood Forest Soil	PPDATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEAIARAHPLLRPRVF
Ga0307478_111140141	3300031823	Hardwood Forest Soil	LSNDDSAASRELTDATRIIVLVDADEGVHLALDDDAAFEALPHPFAPKAISHAAHEALAAHGVAPGSTTFDAAEALARAHPLLRPRVF
Ga0307479_101986481	3300031962	Hardwood Forest Soil	EADEGAHLALEDDASFEALPHPMSQLPISEATQAALASHGVAPGATTFDASEGIARLHPLLRHRVF
Ga0307479_111900671	3300031962	Hardwood Forest Soil	LVDADEGVHLALDDDAAFEALPHPFAPKAIPHTAHEALAAHGVTPGATTFDAAEAVARAHPLLRPRVF
Ga0306922_115388041	3300032001	Soil	AEGDEGAHLTIEDDPAFRALPHPLSPEAIPAAAAEALAAHGVAPGSTMFDAAEALGRVHPLLRHRVF
Ga0335078_121348011	3300032805	Soil	EGNSSLAPQTDSLAGATPVLVLIEADEGAHLALESDADFHALPHPLSQKSISEAAQSALALFGVAPGATTFDAAESLGRVHPLLRFRVF
Ga0335080_107458983	3300032828	Soil	ADEGVHLALEDDPAFEPLPHPLAQKPISAAAQAALAPHGVAPGATTFDAAEALARLHPLLKHRVF
Ga0335074_104651512	3300032895	Soil	MSASTRILLLVEADEGAHAALEDDAAFEPLPHPLAQRPVSTSSQAALAALGVAPGATTLDVAEAAGRVHPLLRHRVF
Ga0335074_106228171	3300032895	Soil	LIEADEGVHLSLEDDPAFEPLPHPLAQKPISVAAQAALEPLGVATGATTFDASEAVARIHPLLRHRVF
Ga0335075_100887572	3300032896	Soil	VTTASAAGAVPSPDAKILALIEADEGVHLSLEGDAGFEPLPHPLAQKPISPAAQPALAGHGIAAGATTFEAAEAVARVHPLLRYRVF
Ga0335073_103357994	3300033134	Soil	DATPIAILVEGDEGAHLGLEDDAAFEPLPHPLAQQPISTAAQAALAPHGVLPGATTFDAAEALGRLHPLLKYRVF
Ga0370514_111999_33_272	3300034199	Untreated Peat Soil	MALPETAQILALIEADEGAHLALEDDAEFQALPHPLAQRPISLEAQTALAAYGVTSGATTFDAAEAVARFHPLLRHRVF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086994

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences