Metagenome Family F086970

Basic Information
Family ID	F086970
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	50 residues
Representative Sequence	LKRAAVLAPGYGGTAEQPILRKLAAALDGFGIASRAITFRTRGSRPSKDYV
Number of Associated Samples	99
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	10.91 %
% of genes from short scaffolds (< 2000 bps)	10.00 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Most Common Taxonomy
Group	Unclassified (89.091 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (35.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.545 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.19% β-sheet: 10.13% Coil/Unstructured: 74.68%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01896	DNA_primase_S	25.45
PF04679	DNA_ligase_A_C	12.73
PF13298	LigD_N	7.27
PF05960	DUF885	0.91
PF13407	Peripla_BP_4	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	12.73
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.91

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
All Organisms	root	All Organisms	10.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
cellular organisms	root	All Organisms → cellular organisms	10.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.09 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.64 %
Chloroflexi bacterium GWC2_70_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium GWC2_70_10	0.91 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005552\|Ga0066701_10038446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2552	Open in IMG/M
3300006854\|Ga0075425_101379759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	798	Open in IMG/M
3300007076\|Ga0075435_100157005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1914	Open in IMG/M
3300009147\|Ga0114129_12410200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	630	Open in IMG/M
3300010304\|Ga0134088_10426108	All Organisms → cellular organisms → Bacteria → Terrabacteria group	649	Open in IMG/M
3300010323\|Ga0134086_10506491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	501	Open in IMG/M
3300010403\|Ga0134123_10585912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1069	Open in IMG/M
3300012532\|Ga0137373_10269372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1367	Open in IMG/M
3300012925\|Ga0137419_11508580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	569	Open in IMG/M
3300018476\|Ga0190274_13164277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium GWC2_70_10	554	Open in IMG/M
3300026296\|Ga0209235_1104143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1218	Open in IMG/M
3300027907\|Ga0207428_11182692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.82%
Host-Associated	Host-Associated	8.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.36%
Plants	Host-Associated → Plants	8.18%
Aquatic	Environmental → Aquatic	5.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.45%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Sediment	Environmental → Aquatic → Sediment	2.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.64%
Loam	Environmental → Terrestrial → Soil → Loam	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Ice	Environmental → Aquatic → Freshwater → Ice	1.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Sand	Environmental → Terrestrial → Soil → Sand	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	9.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.18%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009807	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A1565W1_111486432	3300001536	Permafrost	VKRAAVLAPGYGGTAEQPILRKLKAALDGFGIASRAVTFRTS
JGI25387J43893_10667272	3300002915	Grasslands Soil	LKRAAVLAPGYGGTAEQPILRKLASALGGFGIASQAVTFTTRGSRPSKDYV
Ga0066674_104277962	3300005166	Soil	VIKRAAVLAPGYGGTADQPIVKKLASALGSFGIESRAVTFRTRGSRPSR
Ga0066676_102821732	3300005186	Soil	LKRAAVLAPGYGGTAEQPILQKLGAALGGFGIASQAVTFRTRGSRPSKDY
Ga0070690_1007246561	3300005330	Switchgrass Rhizosphere	VSRAAVLAPGYGGTATQPILRHLVKALAGHGIEALPITFRTRGKRPSREYESELDD
Ga0068869_1008788221	3300005334	Miscanthus Rhizosphere	LTRAAVLAPGYGGTAEQGILRKLVRALAKFDIASSAITFRTSG
Ga0068868_1003274502	3300005338	Miscanthus Rhizosphere	LTRAAVLAPGYGGTAEQGILRALVRALARFDIASSAITFRTSGKRPSRGYVSELEDL
Ga0070691_102439701	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	LTRAAVLAPGYGGTAEQGIVRALARALARFDIATGAITFRTSGKRPSRGYVS
Ga0070691_108477191	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VSRAAVLAPGYGGTATQPILRHLVKALAGHGIEALPITFRTRGKRPSR
Ga0070694_1002986952	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LKRAAVLAPGYGGTAEQPILRALASALTTFDIASRAITFRTRGSRPSKEYASEIEDLRTARD
Ga0070694_1005508581	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	LTRAAVLAPGYGGTAAQPILRALGIRLASYDIAIRAITFRTRGTRPSREYVSELEDLRS
Ga0066686_107118721	3300005446	Soil	VLAPGYGGGERQPILRALAARLARDGIVSRPIAFSTRGARPSRAYERELA
Ga0066689_100084674	3300005447	Soil	VVLAPGYGGDDRQPILRALAARLAKDGIAARAVTFSTRGSRP
Ga0070698_1005421481	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LTRAAVLAPGYGGTAAQPILRALGIRLASYDIAIRAITFRTRGTRPSR
Ga0070679_1005219021	3300005530	Corn Rhizosphere	LTRAAVLAPGYGGTAEQGILRALVRALARFDIASSAITFRT
Ga0070697_1000910372	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LTRAAVLAPGYGGTAEQGILRALVRALARFDIASSAITFR
Ga0070697_1017588602	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTRAAVLAPGYGGTAEQGILRALARALGRFDIDSRAITFRTSGKRPSRGYVSEL
Ga0066697_104636691	3300005540	Soil	MSARGAVLAPGYGGTERQPILAALRDALAPFEIATRAVTFSTRGSRPSP
Ga0070696_1000944992	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LTRAAVLAPGYGGTAEQGIVRALARALARFDIATSAITFRTSGKR
Ga0066701_100384461	3300005552	Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFEIAAQAITFRTRGSRPSKDYASEIEDLRAARDAL
Ga0066695_106345371	3300005553	Soil	LKRAAVLAPGYGGTAEQPILRKLGAALDGFGIASQAVTFGTRGSRPSKDY
Ga0066692_101182552	3300005555	Soil	LTRAAVLAPGYGGTAEQPILRTLVKRLASYGIASHAVTFRTRGKRPSREY
Ga0066707_100446541	3300005556	Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFEIAGQAITFRTRGSRPSKDYASEIEDLRAA
Ga0066670_104826001	3300005560	Soil	MTRGAVLAPGYGGGATQPILRSLAKALAGYGIESLPIEFATRGKRPSR
Ga0066693_101415942	3300005566	Soil	VSGRAAVLAPGYGGTERQPILRKLATALAECGIVSRAVTFSTRGSRPSPRY
Ga0066705_105006441	3300005569	Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFEIAAHAI
Ga0070702_1011284952	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VSRAAVLAPGYGGTATQPILRHLVKALAGHGIEALPITFRTRGKRPSREYESELDDL
Ga0066656_100246783	3300006034	Soil	VTRAAVLAPGYGGTAEQGILRALAPALRRFDIDSRAITFRT
Ga0066653_100913562	3300006791	Soil	LTRAAVLAPGYGGTAEQPILRTLVKRLASYGIASHA
Ga0066658_105095292	3300006794	Soil	LKRAAVLAPGYGGTAEQPILRALASALETFEIAAQAITFRTRGSRPSKDYASEIEDL
Ga0066659_118934941	3300006797	Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFDIAAQAITFRTRGSRPSKDYASEIEDLR
Ga0075425_1013797591	3300006854	Populus Rhizosphere	VLAPGYGGTAEQPILRSLARALDAFGIASRAVTFRTRGSRPSRDYGSEIEDLRAARDALR
Ga0079217_107869981	3300006876	Agricultural Soil	LTRAAVLAPGYGGTAEQPILRALARRLTEFDIASHAITFRTRGKRPSREYASEL
Ga0079215_116340352	3300006894	Agricultural Soil	LTRAAVLAPGYGGTAAQPILRALARRLREFDIESQGITFRTRGRRPSREYALEL
Ga0075435_1001570052	3300007076	Populus Rhizosphere	MTRAAVLAPGYGGTATQAILRSLTKALAGYNIDALPITFRTRGSRPSRDYADELADLRA
Ga0099827_118866742	3300009090	Vadose Zone Soil	VTRRAAVLAPGYGGSERQPILRALGDALARYDIGSRAVRFSTRGARPSPKYA
Ga0114129_124102001	3300009147	Populus Rhizosphere	LTRAAVLAPGYGGTAAQPILRALARRLRDFDIASHAITFRTRGKRPSREYASELEDLRAARDA
Ga0075423_123567521	3300009162	Populus Rhizosphere	MTRRAAVLAPGYGGTERQPILRALGDALARYEIGSRAVRFSTRGSRPS
Ga0105061_11028891	3300009807	Groundwater Sand	LTRAAVLAPGYGGTAEQPILRALARRLNEFDIASRAITFRTRGKRPSREY
Ga0134082_101019752	3300010303	Grasslands Soil	LKRAAVLAPGYGGTAEQPILRALASALKTVEIAAHAITFRTRGSRPSKDYTSEI
Ga0134088_104261082	3300010304	Grasslands Soil	VIKRAAVLAPGYGGTADQPIVKKLASALGSFGIESRAVTFRTRGSRPSREYALELDDLRAARDAL
Ga0134088_106904991	3300010304	Grasslands Soil	LRRAAVLAPGYGGTAEQPILRKLAQALDSFGVASRA
Ga0134086_105064911	3300010323	Grasslands Soil	MSGRAAVLAPGYGGTARQPILRALADALATYAIASRAVTFATRGSRPSAGYERELADLRVARDAL
Ga0134071_104802791	3300010336	Grasslands Soil	VKRAAVLAPGYGGTAQQPILRALALALEQFGIASRAVTFGTRGKRPSKDYASEIEDL
Ga0134124_107471722	3300010397	Terrestrial Soil	LKRAAVLAPGYGGTAEQPILRKLGAAIDEYGIASRAVTFRTRGVR
Ga0134123_105859122	3300010403	Terrestrial Soil	LKRAAVLAPGYGGTAEQPILRKLGAALDEYGIASRAVTFRTRGLRPSKDYVSELDDLRAARDLFRS
Ga0137389_117120071	3300012096	Vadose Zone Soil	VKRAAVLAPGYGRTAEQPILRKVGSALDAFGIATRAVTFT
Ga0136620_104563091	3300012186	Polar Desert Sand	VTRAAVLAPGYGGTADQPILVALGEALGGYGIAARPITFTTRGRPSTAYASEIADVR
Ga0137364_100395191	3300012198	Vadose Zone Soil	LTRAAVLAPGYGGTAEQPILRTLVKRLASYGIASH
Ga0137363_103277211	3300012202	Vadose Zone Soil	LTRAAVLAPGYGGTAEQPILRTLAKRLASYGIASHAVTFRTRGKRPSREYATELDDLR
Ga0137399_107948122	3300012203	Vadose Zone Soil	MRRAAVLAPGYGGTAEQPILRALASALKTFGIASRSVTFRTRGSRSSKGYAS
Ga0137374_107312341	3300012204	Vadose Zone Soil	LTRAAVLAPGYGGTSTQPVLRALARRLASYDIASR
Ga0137376_104851922	3300012208	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILRALTSALESFGIEPRAITFRTRGSRPSKDYVS
Ga0137376_110733072	3300012208	Vadose Zone Soil	VTRAAVLAPGYGGGATQPILRALAKALAGYGIESLPMEFAT
Ga0137378_106700251	3300012210	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILLALASALDRFGITSSAVTFGTRGKRPSKDYASEIEDLRVARD
Ga0137377_102808982	3300012211	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILQKLGAALGGFGIASQAVTFRT
Ga0137386_104686501	3300012351	Vadose Zone Soil	LTRAAVLAPGYGGTAEQRILRALARALKRFDIDSRAITFRTSGKRPSR
Ga0137385_101877341	3300012359	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILQKLGAALGGFGIASHAVALRTR
Ga0137385_110811152	3300012359	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILRKLGAALDGFGIASQAVTFRTRGTRPSRDY
Ga0137390_106996672	3300012363	Vadose Zone Soil	LKRAAVLAPGYGGTADQPILRKLGAALDGFGIVSRAVTFRTRGTRPSKDYASEIEDLRAARD
Ga0136635_103365372	3300012530	Polar Desert Sand	VRAAVLAPGYGGGAEQPILRAVASALEAEGIVARAMEFSTRGRRPSGGYTVEIAELRAARDVLRA
Ga0137373_102693721	3300012532	Vadose Zone Soil	VTRAAVLAPGYGGTAEQGILRALARALGRCDIDSRAITFRTSGKRPRRGYVSELEDLRAARDA
Ga0137397_101461762	3300012685	Vadose Zone Soil	VTRAAVLAPGYGGSAEQPILRALARRLTSYEIASRAVTFRTRGKRPSLEYATELEDLRAA
Ga0137396_101059741	3300012918	Vadose Zone Soil	MRRAAVLAPGYGGTAEQPILRALASALTTFGIASRSVTFRTRGSRPSKDYAS
Ga0137419_115085801	3300012925	Vadose Zone Soil	MRRAAVLAPGYGGTAEQPILRALASALKTFGIASRSVTFRTRGSRPSKDYASELEDLRVARDALG
Ga0137416_101334252	3300012927	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILRRLGLALEGFGIASQAITFKTRGSRPSKDYVSEIEDL
Ga0137410_100692291	3300012944	Vadose Zone Soil	LKRAAVLAPGYGGTAEQPILRKLAAALDGFGIASR
Ga0164303_112161182	3300012957	Soil	LKLAAVLAPGYGGTAEQPILRKLGAAIDEYGIASRAVTFRTRGVRP
Ga0134076_104611522	3300012976	Grasslands Soil	VIKRAAVLAPGYGGTAEQPILKKLASALASFGIEARAVTFRTHGSRPSKEYVLELDDLRAGR
Ga0134076_105334792	3300012976	Grasslands Soil	MTRRAAVLAPGYGGTDRQPILRALGDALAAYGIGSRAIRFSTRGSRPSR
Ga0120149_11251742	3300014058	Permafrost	VKRAAVLAPGYGGTAEQPILRKVEAALSAFGIASRAVTFR
Ga0134075_100474552	3300014154	Grasslands Soil	VTRAAVLAPGYGGTAEQGILRALARALRRFDIDSRAITFRTRGTRPSRGYVSEL
Ga0167668_10347701	3300015193	Glacier Forefield Soil	VKRAAVLAPGYGGTAEQPILRKVEAALDGFGIASRAVTFRTRGT
Ga0132257_1019857692	3300015373	Arabidopsis Rhizosphere	VTRGAVLAPGYGGTATQPILRSLVKALAGYGIDALPITF
Ga0134069_11297862	3300017654	Grasslands Soil	LKRAAVLAPGDGGTAEQPILQTLGTALDGFGIASQAVTFGTRGSRPSKDYVSEIEDLR
Ga0134083_102128912	3300017659	Grasslands Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFDIAAQAITFRTRGSRPSKDYAS
Ga0184619_101684572	3300018061	Groundwater Sediment	VKRAAVLAPGYGGTAEQSILRALVRALRTFDIDSCAITFRTSGKRPSRGYVS
Ga0066655_110580202	3300018431	Grasslands Soil	MSARGAVLAPGYGGTERQPILAALRDALAPFEIATRAVTFSTRGSRPSPDY
Ga0066667_121760522	3300018433	Grasslands Soil	LKRAAVLAPGYRGTAEQPILRALASALKTFEIAAQAITFRTRGSRPSKDYASAGD
Ga0066662_105518142	3300018468	Grasslands Soil	LKRAAVLAPGYGGTAEQPILQKLGAALGGFAIASQAVTFR
Ga0066662_114815771	3300018468	Grasslands Soil	MSGRAAVLAPGYGGTARQPILRALADALATYAIASRAVTFATRGSRPSAGYEREL
Ga0190274_131642771	3300018476	Soil	LTRAAVLAPGYGSTAAQPILRALGIRLQSYGIEANAITFSTRGKRPSRDYAAELSDLRSARD
Ga0193755_11413931	3300020004	Soil	VKRAAVLAPGYGGTAQQPILRALASALDRFGITTRAVTFGTRGKRPSKEYASEIEDLR
Ga0210382_100196861	3300021080	Groundwater Sediment	LTRAAVLAPGYGGTAAQPILRAVGMRLAQYDIAILAISFRTRGQRPSRDYFSELE
Ga0222622_107437641	3300022756	Groundwater Sediment	LKRAAVLAPGYGGTAQQPILRRLASALDGFGIASRAVTFRTSGSRPSKDY
Ga0222622_113686421	3300022756	Groundwater Sediment	LKRAAVLAPGYGGTAEQPILRKLAAALDGFGIASRAITFRTRGSRPSKDYV
Ga0207707_105995062	3300025912	Corn Rhizosphere	VSRAAVLAPGYGGTATQPILRHLVKALAGHGIEALPITFRTRGKRPSREYESEL
Ga0209235_10515901	3300026296	Grasslands Soil	LKRAAVPAPGYGDTAEQPILRDLASALERFGIAARAVTFRTRGSWPSKDYLSEIEDL
Ga0209235_11041432	3300026296	Grasslands Soil	VIKRAAVLAPGYGGTADQPIVKKLASALGSFGIESRAVTFRTRGSRPSRDYALELDDLRAARDALG
Ga0209468_11864351	3300026306	Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFDIAAQAIT
Ga0209155_10854631	3300026316	Soil	LRRAAVLAPGYGGTAEQPILRKLGAALEGFGITSKA
Ga0209687_12904451	3300026322	Soil	MSARGAVLAPGYGGTERQPILAALRDALAPFEIATRAVTFSTRGSRPSPDYARELDDLR
Ga0209158_10301972	3300026333	Soil	LKRAAVLAPGYGGTAEQPILRALASALKTFEIAARAITFRTRGSR
Ga0209377_10887012	3300026334	Soil	VIKRAAVLAPGYGGTADQPIVKKLASALGSFGIESRAVTFRTRGSRPSREYALELE
Ga0209057_11209542	3300026342	Soil	MSARGAVLAPGYGGTERQPILAALRDALAPFEIATRAVTFSTRGSRPSPGYA
Ga0209376_11733172	3300026540	Soil	LKRAAVLAPGYGGTAEQPILRALTSALESFGIEPRAITFRTRGSRPSKDY
Ga0209818_11984821	3300027637	Agricultural Soil	LTRAAVLAPGYGGTAEQPILRALARRLTEFDIASHAITFRTR
Ga0209481_103372761	3300027880	Populus Rhizosphere	LTRAAVLAPGYGGTAAQPILRALARRLRDFDIASHAITFRTRGK
Ga0209590_104395431	3300027882	Vadose Zone Soil	MTRRAAVLAPGYGGTDRQPILRALGDALAAYGIGSRAIRFSTRGSRP
Ga0207428_111826922	3300027907	Populus Rhizosphere	LTRAAVLAPGYGGTAEQGILRKLVRALAKFDIASSAITFRTSGKRPSRGYVSELEDLRAARVA
Ga0307298_102769461	3300028717	Soil	LTRAAVLAPGYGGTAEQGILRALVRALAKFDIASSAITFRTSGKRP
Ga0307323_103227732	3300028787	Soil	VSRAAVLAPGYGGTADQGILRALARALRTFDIDSRAIT
Ga0307290_103060162	3300028791	Soil	VTKRGAVLAPGYGGTADQPILKKLAAALASFGIES
Ga0307504_102553622	3300028792	Soil	VKRAAVLAPGYGGTAEQPILRKLGAALDGFGIASRAVTFGTRG
Ga0307504_103533922	3300028792	Soil	VKRAAVLAPGYGGSSTQPILRNLTKALMVYGIDAL
Ga0307284_102729601	3300028799	Soil	VSRAAVLAPGYGGTATQPILRALTKALAGHGIEALPITFRTRGKR
Ga0307292_102569652	3300028811	Soil	LKRAAVLAPGYGGTAEQPILRRLGSALEAFGITSQAITFRTSGS
Ga0307312_111683272	3300028828	Soil	VKRAAVLAPGYGGSADQPILRKLGAALDGFAIASRAVTFTTRGSRPSKDYASEIDDLRAA
Ga0307286_104002452	3300028876	Soil	LTRAAVLAPGYGGTAEQGILRALVRALAKFDIASSAITFRSSGKRPSRGYVSELEDLRAA
Ga0307304_105518281	3300028885	Soil	VKRAAVLAPGYGGSADQPILRKLGAALDGFAIASRAVTFTTRGSR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086970

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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