Metagenome / Metatranscriptome Family F086922

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086922
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	41 residues
Representative Sequence	PGVDLAINGLVEATPDDHELLERGMAIFDGLYTVLKQKT
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.73 %
% of genes near scaffold ends (potentially truncated)	96.36 %
% of genes from short scaffolds (< 2000 bps)	94.55 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (35.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.75% β-sheet: 0.00% Coil/Unstructured: 49.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF06439	3keto-disac_hyd	14.55
PF07485	DUF1529	11.82
PF09828	Chrome_Resist	2.73
PF02417	Chromate_transp	1.82
PF09837	DUF2064	1.82
PF09678	Caa3_CtaG	0.91
PF00005	ABC_tran	0.91
PF13473	Cupredoxin_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	1.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.27 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.27 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.27 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	53.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.91 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	53.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.36 %
Unclassified	root	N/A	2.73 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	53.64 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.64 %
Unclassified	root	N/A	2.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	43.64 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.64 %
Unclassified	root	N/A	2.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	43.64 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.64 %
Unclassified	root	N/A	2.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1060181	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300002558\|JGI25385J37094_10191918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300005166\|Ga0066674_10481939	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005175\|Ga0066673_10327005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	895	Open in IMG/M
3300005186\|Ga0066676_10568103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	769	Open in IMG/M
3300005330\|Ga0070690_101500546	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005332\|Ga0066388_103008028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	861	Open in IMG/M
3300005526\|Ga0073909_10249125	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300005540\|Ga0066697_10020608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3566	Open in IMG/M
3300005555\|Ga0066692_10428462	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300005556\|Ga0066707_10324490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300005556\|Ga0066707_10680945	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300005557\|Ga0066704_10408855	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	900	Open in IMG/M
3300005558\|Ga0066698_10147303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1588	Open in IMG/M
3300005560\|Ga0066670_10841683	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005569\|Ga0066705_10014617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3875	Open in IMG/M
3300005764\|Ga0066903_101432863	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300006034\|Ga0066656_10197979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1278	Open in IMG/M
3300006794\|Ga0066658_10490687	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300006806\|Ga0079220_11243758	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	619	Open in IMG/M
3300006852\|Ga0075433_11015727	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300006880\|Ga0075429_100169314	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300006880\|Ga0075429_101344070	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300006914\|Ga0075436_101145828	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300009012\|Ga0066710_104404499	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300009038\|Ga0099829_11692387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300009089\|Ga0099828_10551706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1038	Open in IMG/M
3300009089\|Ga0099828_10810791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	838	Open in IMG/M
3300009089\|Ga0099828_11786653	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	540	Open in IMG/M
3300009090\|Ga0099827_11160054	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009148\|Ga0105243_12522065	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300009162\|Ga0075423_12874295	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300009176\|Ga0105242_12151510	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300009792\|Ga0126374_10618061	Not Available	802	Open in IMG/M
3300009819\|Ga0105087_1014469	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300010029\|Ga0105074_1074462	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300010043\|Ga0126380_10467690	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	958	Open in IMG/M
3300010047\|Ga0126382_11725741	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	586	Open in IMG/M
3300010048\|Ga0126373_12091723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	628	Open in IMG/M
3300010321\|Ga0134067_10207279	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	723	Open in IMG/M
3300010322\|Ga0134084_10231603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	659	Open in IMG/M
3300010359\|Ga0126376_10371691	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300010359\|Ga0126376_11420423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	719	Open in IMG/M
3300010360\|Ga0126372_10980985	Not Available	855	Open in IMG/M
3300010361\|Ga0126378_11642802	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	730	Open in IMG/M
3300010362\|Ga0126377_10481007	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300010362\|Ga0126377_10801189	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1000	Open in IMG/M
3300010366\|Ga0126379_12804947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300010398\|Ga0126383_12573605	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	593	Open in IMG/M
3300011270\|Ga0137391_10536395	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	987	Open in IMG/M
3300012096\|Ga0137389_10609773	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	938	Open in IMG/M
3300012096\|Ga0137389_10826230	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	796	Open in IMG/M
3300012189\|Ga0137388_10559264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1063	Open in IMG/M
3300012198\|Ga0137364_10310902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1171	Open in IMG/M
3300012203\|Ga0137399_11151210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300012204\|Ga0137374_10448794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1013	Open in IMG/M
3300012207\|Ga0137381_11041125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	705	Open in IMG/M
3300012285\|Ga0137370_10111159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1553	Open in IMG/M
3300012350\|Ga0137372_10213417	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1537	Open in IMG/M
3300012350\|Ga0137372_10525243	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	877	Open in IMG/M
3300012361\|Ga0137360_10631318	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	918	Open in IMG/M
3300012379\|Ga0134058_1256947	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012685\|Ga0137397_11030097	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300012957\|Ga0164303_10923573	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300012972\|Ga0134077_10011875	All Organisms → cellular organisms → Bacteria → Proteobacteria	2854	Open in IMG/M
3300012976\|Ga0134076_10052015	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1547	Open in IMG/M
3300014308\|Ga0075354_1116888	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300015358\|Ga0134089_10579810	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	500	Open in IMG/M
3300015374\|Ga0132255_102354386	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	813	Open in IMG/M
3300016341\|Ga0182035_12159190	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	505	Open in IMG/M
3300017654\|Ga0134069_1147568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	785	Open in IMG/M
3300018075\|Ga0184632_10002609	All Organisms → cellular organisms → Bacteria → Proteobacteria	7510	Open in IMG/M
3300018433\|Ga0066667_10088312	All Organisms → cellular organisms → Bacteria → Proteobacteria	2022	Open in IMG/M
3300018433\|Ga0066667_10315894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300018433\|Ga0066667_11303195	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	635	Open in IMG/M
3300018468\|Ga0066662_10416650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1188	Open in IMG/M
3300018468\|Ga0066662_11901051	Not Available	623	Open in IMG/M
3300018468\|Ga0066662_12690145	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300018482\|Ga0066669_11569108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300018482\|Ga0066669_12188202	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300019789\|Ga0137408_1110621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1910	Open in IMG/M
3300022694\|Ga0222623_10259543	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	670	Open in IMG/M
3300024330\|Ga0137417_1474791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1007	Open in IMG/M
3300025917\|Ga0207660_10446394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1046	Open in IMG/M
3300026297\|Ga0209237_1045081	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2266	Open in IMG/M
3300026316\|Ga0209155_1133088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	850	Open in IMG/M
3300026325\|Ga0209152_10470162	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300026333\|Ga0209158_1121927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	975	Open in IMG/M
3300026333\|Ga0209158_1246545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	612	Open in IMG/M
3300026342\|Ga0209057_1049624	All Organisms → cellular organisms → Bacteria → Proteobacteria	1990	Open in IMG/M
3300026469\|Ga0257169_1091709	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300026532\|Ga0209160_1349983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300026537\|Ga0209157_1378125	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300026538\|Ga0209056_10483877	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	662	Open in IMG/M
3300026548\|Ga0209161_10414471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300027527\|Ga0209684_1067696	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	556	Open in IMG/M
3300027748\|Ga0209689_1417040	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300027882\|Ga0209590_10747738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	624	Open in IMG/M
3300027909\|Ga0209382_12149092	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300028792\|Ga0307504_10306758	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	599	Open in IMG/M
3300031546\|Ga0318538_10603632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	595	Open in IMG/M
3300031564\|Ga0318573_10272580	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	904	Open in IMG/M
3300031716\|Ga0310813_11813673	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031740\|Ga0307468_101556124	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	615	Open in IMG/M
3300031782\|Ga0318552_10065152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1752	Open in IMG/M
3300032174\|Ga0307470_11605772	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300032180\|Ga0307471_100723716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1160	Open in IMG/M
3300032180\|Ga0307471_102451701	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300032180\|Ga0307471_103826251	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300032180\|Ga0307471_104138902	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.82%
Host-Associated	Host-Associated	8.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.00%
Plants	Host-Associated → Plants	8.18%
Aquatic	Environmental → Aquatic	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.27%
Sediment	Environmental → Aquatic → Sediment	1.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Loam	Environmental → Terrestrial → Soil → Loam	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Sand	Environmental → Terrestrial → Soil → Sand	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	30.00%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	20.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_01204170	2124908045	Soil	LHDGKFTRNESMGVDLAIRALAEATPDDHELLERGMAIFDGLHVVLKQKKT
JGI25385J37094_101919181	3300002558	Grasslands Soil	MRWLTSEADLHDGTFTRQESTGADLAIKGLAAAAQDDHELLERGMAIFEGLRSVLKQKT*
Ga0066674_104819391	3300005166	Soil	TGVDLAINGLVEATPDDDDLLARGMAIFDGLYTVLKQKT*
Ga0066673_103270051	3300005175	Soil	ADLHDGTFTRQESTGADLAIKGLAAAAQDDHELLERGMAIFEGLRSVLKQKT*
Ga0066676_105681032	3300005186	Soil	TGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKTT*
Ga0070690_1015005461	3300005330	Switchgrass Rhizosphere	RNESSGVDLAIQALAETTEDDHVLLERGMALFNGLFAVLKHTT*
Ga0066388_1030080281	3300005332	Tropical Forest Soil	DGKFTRDESTGVDLAIRALAESTGDDHDLLERGMAIFDGLYTVLKRKA*
Ga0073909_102491251	3300005526	Surface Soil	RNESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKKA*
Ga0066697_100206087	3300005540	Soil	RGVDLAIKGLAESTGDDHELLERGMAIFDGLYTVLKRKT*
Ga0066692_104284622	3300005555	Soil	EADLHDGKFTRNESTGVDLAIRALAEATPDDDDLLERGMAIFDGLHSVLKQKKT*
Ga0066707_103244903	3300005556	Soil	IRALAEATPDDHDLLEHGMAIFDGLHAVLKQKTT*
Ga0066707_106809452	3300005556	Soil	DLHDGKFTRNESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKTT*
Ga0066704_104088552	3300005557	Soil	ESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKTT*
Ga0066698_101473031	3300005558	Soil	LHDGKFTRNESTGVDLAIRALAEATPDDLELLERGIAIFDGLHAVLKQKTA*
Ga0066670_108416832	3300005560	Soil	AIRGLAASTQEDQELLERGMAIFDGLYTVLKRKT*
Ga0066705_100146171	3300005569	Soil	GVDLAIRALAEATPDDDELLTRGMAMFDGLYAVLKSKTR*
Ga0066903_1014328633	3300005764	Tropical Forest Soil	HAAAGLDLAIKGLAEATPDDHELFERGGAMFDGIYAVLKRDG*
Ga0066656_101979793	3300006034	Soil	GKFTRNESTGVDLAIRALAEATLDDQELLERGMAIFDGLHSVLKQKKT*
Ga0066658_104906872	3300006794	Soil	RNESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHVVLKQKRT*
Ga0079220_112437582	3300006806	Agricultural Soil	GLDLAINGLVEATPDDHELLARGGALFEGLYAVLKQKT*
Ga0075433_110157271	3300006852	Populus Rhizosphere	DLAINGLVEATPDDDELLERGMAIFDGLYTVLKQKT*
Ga0075429_1001693144	3300006880	Populus Rhizosphere	SGVDLAINGLVAAVPDDHELLERGMALFDGLHRVLKQQA*
Ga0075429_1013440702	3300006880	Populus Rhizosphere	ATGVDLAIRALAESTPDDHDLLERGMAIFDGLYTVLKQKG*
Ga0075436_1011458282	3300006914	Populus Rhizosphere	GKFTRNESIGVDLTLRALAEATTDDQDLLTQGMAIFDGLYTVLKQKA*
Ga0066710_1044044991	3300009012	Grasslands Soil	PGVDLAINGLVEATPDDHELLERGMAIFDGLYTVLKQKT
Ga0099829_116923871	3300009038	Vadose Zone Soil	GLDLAINGLVEATPDDDELLARGMGIFEGLYAVLKQKT*
Ga0099828_105517063	3300009089	Vadose Zone Soil	EAHGIDLAVNGLVAATPDDHELLERGMILFDGRYATLKQKT*
Ga0099828_108107912	3300009089	Vadose Zone Soil	GVDLAINSLVEVTPDDHELLERGMAIFEGLYTVFKQKT*
Ga0099828_117866531	3300009089	Vadose Zone Soil	LAIKGLAEATQDDHDLLERGMAICDGLYTVLKRKT*
Ga0099827_111600542	3300009090	Vadose Zone Soil	AILGLAATIHDDHELLERGMALFDGLYTVLKQRT*
Ga0105243_125220652	3300009148	Miscanthus Rhizosphere	IGVDLTLRALAEAMTDDHDLLTQGMAIFDGLYTVLKQKA*
Ga0075423_128742951	3300009162	Populus Rhizosphere	DLTLRALAEATTDDQDLLTQGMAIFDGLYTVLKQKA*
Ga0105242_121515102	3300009176	Miscanthus Rhizosphere	DSKFTRNESIGVDLTLHALAETMTDDHDLLTQGMAIFDGLYTVLKQKA*
Ga0126374_106180612	3300009792	Tropical Forest Soil	DGKYTRNEAVGVDLAIRALAEATGDDHELLTQGMAIFDGLYTVLKQKA*
Ga0105087_10144693	3300009819	Groundwater Sand	NESTGVDLAIRALAEATPDDDELLDRGMAIFDGLYTVLKRKT*
Ga0105074_10744621	3300010029	Groundwater Sand	TRNEAIGIDLAVRALAQATPDDHELLERGMAIFDGLHSVLKQKT*
Ga0126380_104676903	3300010043	Tropical Forest Soil	AVARALAEATADDHDLLARGMAIFDGLYTVLKQKS*
Ga0126382_117257412	3300010047	Tropical Forest Soil	DGKFTRQESTGVDLAISALAASTADDHDLLERGISLFDGLHAVLKKRTAT*
Ga0126373_120917231	3300010048	Tropical Forest Soil	KFTRQESTGVDLAISALAASNPDDHDLLERGIALFDGLHAVLKKKTTT*
Ga0134067_102072792	3300010321	Grasslands Soil	DFAIRGLAASTQEDQELLERGMAIFDGLYTVLKRKT*
Ga0134084_102316031	3300010322	Grasslands Soil	LDLAVKGLAESTQDDHELLEQGMAIFDGLYAVLKRKT*
Ga0126376_103716911	3300010359	Tropical Forest Soil	RNEAAGLDLAINGLVEAVPDDHELLARGTALFEGLYAVLKQKT*
Ga0126376_114204231	3300010359	Tropical Forest Soil	VDLAISALAASTRDDYDLLERGIALFDGLHAVLKKRTAT*
Ga0126372_109809851	3300010360	Tropical Forest Soil	LAIKGLAATTQDDDELLKRGMALFDGLYSVLKQKS*
Ga0126378_116428021	3300010361	Tropical Forest Soil	EAAGVDLAINALVEIVPDDDELLERGMAIFEGLYTVLKQKT*
Ga0126377_104810073	3300010362	Tropical Forest Soil	DLAIKGLAAATLDDHDLLERGMALFDGLYSVLKQKT*
Ga0126377_108011891	3300010362	Tropical Forest Soil	KFTRNEAAGLDLAINGLVEAIPEDHELLAHGGALFEGLYAVLKQKT*
Ga0126379_128049471	3300010366	Tropical Forest Soil	DGKFTRNEATGVDLAINGLVEATLEDDELLERGMAIFEGMYAVLKRKA*
Ga0126383_125736051	3300010398	Tropical Forest Soil	KFTRDESSGVDLAISALAASTPDDQELLERGMAIFDGLHAVLKKKT*
Ga0137391_105363953	3300011270	Vadose Zone Soil	ATGVDLAINGLVEATPDDDDLLARGMAMFEGLYTILKQKT*
Ga0137389_106097733	3300012096	Vadose Zone Soil	GVDLAIRGLAASTQEDQELLERGMAIFDGLYTVLKQKT*
Ga0137389_108262301	3300012096	Vadose Zone Soil	VDLAINGLVEATPDDDDLLARGMAMFEGLYTILKQKT*
Ga0137388_105592641	3300012189	Vadose Zone Soil	NEATGVDLAINSLVEVTPDDHELLERGMAIFNGLYTVLKQKT*
Ga0137364_103109023	3300012198	Vadose Zone Soil	GVDFAIRGLAASTQEDQELLERGMAIFDGLYTVLKRKT*
Ga0137399_111512101	3300012203	Vadose Zone Soil	LHDGKFTRNESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKRT*
Ga0137374_104487942	3300012204	Vadose Zone Soil	LHDGKFTRNESTGVDLAIKGLAGATQDDADLLERGMAIFDGFYTVWRQKT*
Ga0137381_110411251	3300012207	Vadose Zone Soil	VDLAINGLVEATPDDDDLLARGMAIFDGLYTVLKQKT*
Ga0137370_101111591	3300012285	Vadose Zone Soil	TGVDLAIKGLAAATQDDHDLLERGMAIFDGLYSVLKQKT*
Ga0137372_102134174	3300012350	Vadose Zone Soil	AINGLAEATQDDRDLLERGMEIFDGLYTVLKRKT*
Ga0137372_105252431	3300012350	Vadose Zone Soil	AIRGLAAGTEDDQELLERGMAMFDGLYTVLKQKT*
Ga0137360_106313181	3300012361	Vadose Zone Soil	GLDLAISGLVASIEDDRELLERGMAMFEGLYTVLKRKT*
Ga0134058_12569472	3300012379	Grasslands Soil	DLAIRGLAATLHDDDDLLERGMAVFDGLYEALKQKS*
Ga0137397_110300972	3300012685	Vadose Zone Soil	EATGVDLAINGLVEATPEDHELLERGMAIFDGLYTVLKRKT*
Ga0164303_109235731	3300012957	Soil	EATGIDLAIKGLAEATPDDQDLLERGMAMFDGLYTVLKRKT*
Ga0134077_100118751	3300012972	Grasslands Soil	FTRNESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKTT*
Ga0134076_100520151	3300012976	Grasslands Soil	DLAINGLVEATPDDHELLERGMAIFNGLYTVLKQKT*
Ga0075354_11168882	3300014308	Natural And Restored Wetlands	GIDLAIKGLAEATQDDQDLLDRGMAIFDGLYTVLKRKT*
Ga0134089_105798101	3300015358	Grasslands Soil	RNEATGVDLAINSLVEATPDDHELLERGMAIFEGLYTVLKQKT*
Ga0132255_1023543862	3300015374	Arabidopsis Rhizosphere	AINALVEATAEDHELLERGMALFEGLYAVLKRKT*
Ga0182035_121591901	3300016341	Soil	ESTGVDLAVSALAASTPDDHDLLEKGIALFDGLHTVLKKRTAT
Ga0134069_11475682	3300017654	Grasslands Soil	LAINGLVEATPDDHELLERGMAIFDGLYTVLEQKT
Ga0184632_1000260911	3300018075	Groundwater Sediment	NEAIGIDLAVRALAQATPDDHELLERGMAIFDGLHSVLKQKT
Ga0066667_100883124	3300018433	Grasslands Soil	AIRALAEATPDDHDLLERGMAIFDGLHVVLKQKRT
Ga0066667_103158941	3300018433	Grasslands Soil	LAVKGLAESTQDDHELLERGMAIFDGLYTVLKQKT
Ga0066667_113031952	3300018433	Grasslands Soil	ATGVDLAINGLVEATPDDDDLLARGMAIFDGLYTVLKQKT
Ga0066662_104166501	3300018468	Grasslands Soil	ADLHDGTFTRQESTGADLAIKRLAAAAQDDHELLERGVAIFEGLRSVLKQKT
Ga0066662_119010512	3300018468	Grasslands Soil	DLAIRGLAASTQDDHELLERGMAIFDGLYTVLKRKT
Ga0066662_126901452	3300018468	Grasslands Soil	VDFAIRGLAASTQEDQELLERGMAIFDGLYTVLKRKT
Ga0066669_115691081	3300018482	Grasslands Soil	NEATGLDLAINGLVEATPDDDELIERGMAIFEGLYTVLKQKT
Ga0066669_121882021	3300018482	Grasslands Soil	TGVDLAINGLVEATPDDDDLLARGMAIFDGLYTVLKQKT
Ga0137408_11106214	3300019789	Vadose Zone Soil	VDLAINGLVEATPDDDELLERGMAIFNGLYTVLKQKT
Ga0222623_102595432	3300022694	Groundwater Sediment	HDGKFTRNEAIGIDLAVRALAQATPDDHELLERGMAIFDGLHAVLKQRT
Ga0137417_14747911	3300024330	Vadose Zone Soil	VHTERVDGVDLAIRALAEATPDDHELLERGMAIFDGLHSVLKRRKT
Ga0207660_104463943	3300025917	Corn Rhizosphere	STGVDLAIRALAEATPDDHDLLERGMAIFDGLHAVLKQKKA
Ga0209237_10450813	3300026297	Grasslands Soil	VDLAIKGPGHRHAQDDHELLERGMAIFDGLRSVLKQKT
Ga0209155_11330883	3300026316	Soil	ADLAIKGLAAAAQDDHELLERGMAIFEGLRSVLKQKT
Ga0209152_104701621	3300026325	Soil	RNESTGVDLAIRALAEATPDDHDLLERGMAIFDGLHVVLKQKRT
Ga0209158_11219271	3300026333	Soil	HSPGESTGVDLAIKGPGHRHAQDDHELLERGMAIFDGLRSVLKQKT
Ga0209158_12465451	3300026333	Soil	DLAVNGLVEATPEDHELLERGMAIFEGLYTVLKQKA
Ga0209057_10496244	3300026342	Soil	STGVDLAIRALAEATPDDHDLLERGMAIFDGLHVVLKQKRT
Ga0257169_10917091	3300026469	Soil	DLAIKGLAEATHDDQDLLERGMLMFDGLYTVLKRKT
Ga0209160_13499831	3300026532	Soil	TRNEATGVDLAINSLVEATPDDHELLERGMAIFEGLYTVLKQKT
Ga0209157_13781252	3300026537	Soil	NEATGVDLAINSLVEATPDDHELLERGMAIFEGLYTVLKQKT
Ga0209056_104838772	3300026538	Soil	RNESTGVDLAIRALAEATLDDQELLERGMAIFDGLHSVLKQKKT
Ga0209161_104144712	3300026548	Soil	GVDLAINSLVEATPDDHELLERGMAIFEGLYTVLKQKT
Ga0209684_10676962	3300027527	Tropical Forest Soil	AAGIDMAINALVVSTPDDHDLLSRGTALFEGLYTVLKQKT
Ga0209689_14170402	3300027748	Soil	KFTRNEATGVDLAINSLVEVTPDDHELLERGMAIFEGLYTVLKQKT
Ga0209590_107477382	3300027882	Vadose Zone Soil	VDLAIKGLAEATQDDQDLLERGMAIFDGLYTVLKRKT
Ga0209382_121490921	3300027909	Populus Rhizosphere	DFAINGLVEATPDDDDLLARGMAIFEGLYTVLKQNT
Ga0307504_103067581	3300028792	Soil	DLAIKGLAETTHDDHDLLERGMALFDGLYTVLKRKT
Ga0318538_106036321	3300031546	Soil	DEAAGLDLAIRALAEATGDDHELLTQGMAIFDGLYTVLKQKA
Ga0318573_102725801	3300031564	Soil	AEAIGVDLSIRALAEATADDHDLLTHGMAIFDGLYSVLKQKA
Ga0310813_118136732	3300031716	Soil	RQEASGVDLALQAIAETTEDDHDLLERGMALFNGLFAVLKDKT
Ga0307468_1015561242	3300031740	Hardwood Forest Soil	FTRNEATGVDLAIRALAEATPDDHELLERGMAIFDGLHSVLKQRKT
Ga0318552_100651521	3300031782	Soil	THQESTGVDLAVSALAASTPDDHDLLEKGIALFDGLHTVLKKRTAT
Ga0307470_116057722	3300032174	Hardwood Forest Soil	LTLRALAEATTDDHDLLTHGMAIFDGLYTVLKQKA
Ga0307471_1007237163	3300032180	Hardwood Forest Soil	TGVDLAIRALAEATPDDHDLLERGMAIFDGLHTVLKQKKAR
Ga0307471_1024517011	3300032180	Hardwood Forest Soil	TGVDLAIRALAEATPDDHELLERGMAIFDGLHSVLKQRKT
Ga0307471_1038262511	3300032180	Hardwood Forest Soil	AAGLDLAIKGLAEATPDDHELLERGGSMFDGIYEVLKRDA
Ga0307471_1041389021	3300032180	Hardwood Forest Soil	TRNEAAGLDLAINGLVEATPDDDELLARGMGIFEGLYAVLKQKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086922

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences