Metagenome Family F086908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086908
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	44 residues
Representative Sequence	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALRAAR
Number of Associated Samples	96
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (25.455 % of family members)
Environment Ontology (ENVO)	Unclassified (49.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.59% β-sheet: 11.76% Coil/Unstructured: 67.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04389	Peptidase_M28	30.00
PF00069	Pkinase	15.45
PF01661	Macro	10.91
PF05960	DUF885	6.36
PF00106	adh_short	0.91
PF01902	Diphthami_syn_2	0.91
PF12802	MarR_2	0.91
PF12706	Lactamase_B_2	0.91
PF12833	HTH_18	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	61.82
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	10.91
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	6.36
COG2102	Diphthamide synthase (EF-2-diphthine--ammonia ligase)	Translation, ribosomal structure and biogenesis [J]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	68.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	68.18 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	25.45 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	2.73 %
Unclassified	root	N/A	1.82 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	24.55 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	2.73 %
Unclassified	root	N/A	1.82 %
Gemmatimonadetes bacterium 13_1_40CM_70_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_70_11	0.91 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	24.55 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2.73 %
Unclassified	root	N/A	1.82 %
Gemmatimonadetes bacterium 13_1_40CM_70_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_70_11	0.91 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	24.55 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	2.73 %
Unclassified	root	N/A	1.82 %
Gemmatimonadetes bacterium 13_1_40CM_70_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_70_11	0.91 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	24.55 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2.73 %
Unclassified	root	N/A	1.82 %
Gemmatimonadetes bacterium 13_1_40CM_70_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_70_11	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10047822	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300002886\|JGI25612J43240_1084345	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300002908\|JGI25382J43887_10192430	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300005166\|Ga0066674_10074102	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
3300005181\|Ga0066678_10446716	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300005184\|Ga0066671_10861974	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005186\|Ga0066676_10056285	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2256	Open in IMG/M
3300005341\|Ga0070691_10481027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	714	Open in IMG/M
3300005447\|Ga0066689_10935676	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	535	Open in IMG/M
3300005468\|Ga0070707_101487022	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	644	Open in IMG/M
3300005536\|Ga0070697_101858795	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300005554\|Ga0066661_10244279	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300005555\|Ga0066692_10000272	All Organisms → cellular organisms → Bacteria	16175	Open in IMG/M
3300005556\|Ga0066707_10025936	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300005556\|Ga0066707_10915855	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	537	Open in IMG/M
3300005560\|Ga0066670_10614965	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005561\|Ga0066699_10414998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	963	Open in IMG/M
3300005561\|Ga0066699_10878857	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005566\|Ga0066693_10411721	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005566\|Ga0066693_10465713	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	519	Open in IMG/M
3300005569\|Ga0066705_10581169	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005574\|Ga0066694_10183000	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300005574\|Ga0066694_10516502	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300005883\|Ga0075299_1022613	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	633	Open in IMG/M
3300006032\|Ga0066696_10041887	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2522	Open in IMG/M
3300006796\|Ga0066665_10033322	All Organisms → cellular organisms → Bacteria	3405	Open in IMG/M
3300006797\|Ga0066659_11345590	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006797\|Ga0066659_11794609	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	519	Open in IMG/M
3300006806\|Ga0079220_12103834	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300006853\|Ga0075420_101920469	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006914\|Ga0075436_100100004	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2019	Open in IMG/M
3300006954\|Ga0079219_11070599	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300007255\|Ga0099791_10140416	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1126	Open in IMG/M
3300007265\|Ga0099794_10028849	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2582	Open in IMG/M
3300009012\|Ga0066710_102966511	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	662	Open in IMG/M
3300009012\|Ga0066710_103794111	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	567	Open in IMG/M
3300009089\|Ga0099828_10171952	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1924	Open in IMG/M
3300009089\|Ga0099828_11728235	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	550	Open in IMG/M
3300009090\|Ga0099827_10618597	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	934	Open in IMG/M
3300009162\|Ga0075423_10914181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	931	Open in IMG/M
3300010320\|Ga0134109_10073793	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1160	Open in IMG/M
3300010321\|Ga0134067_10136177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	867	Open in IMG/M
3300010322\|Ga0134084_10248628	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	641	Open in IMG/M
3300010322\|Ga0134084_10337539	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	570	Open in IMG/M
3300010323\|Ga0134086_10163855	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	817	Open in IMG/M
3300010333\|Ga0134080_10033391	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1970	Open in IMG/M
3300010335\|Ga0134063_10024615	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2519	Open in IMG/M
3300010399\|Ga0134127_12906554	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	558	Open in IMG/M
3300011271\|Ga0137393_10047176	All Organisms → cellular organisms → Bacteria	3355	Open in IMG/M
3300012201\|Ga0137365_11137661	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300012202\|Ga0137363_10773189	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	814	Open in IMG/M
3300012208\|Ga0137376_10131384	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2144	Open in IMG/M
3300012349\|Ga0137387_11081486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	572	Open in IMG/M
3300012354\|Ga0137366_10059242	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300012357\|Ga0137384_10133194	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2081	Open in IMG/M
3300012357\|Ga0137384_10214106	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1612	Open in IMG/M
3300012360\|Ga0137375_10105989	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2849	Open in IMG/M
3300012532\|Ga0137373_10022870	All Organisms → cellular organisms → Bacteria	6217	Open in IMG/M
3300012917\|Ga0137395_11220534	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	525	Open in IMG/M
3300012927\|Ga0137416_10300310	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1331	Open in IMG/M
3300012930\|Ga0137407_11006694	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	789	Open in IMG/M
3300012972\|Ga0134077_10057676	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1444	Open in IMG/M
3300012972\|Ga0134077_10078484	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1255	Open in IMG/M
3300014154\|Ga0134075_10434214	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	583	Open in IMG/M
3300014157\|Ga0134078_10384942	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	625	Open in IMG/M
3300015358\|Ga0134089_10466998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	548	Open in IMG/M
3300017654\|Ga0134069_1245917	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	621	Open in IMG/M
3300017659\|Ga0134083_10151740	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	938	Open in IMG/M
3300017961\|Ga0187778_10458656	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	842	Open in IMG/M
3300017997\|Ga0184610_1019131	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300018054\|Ga0184621_10037187	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1582	Open in IMG/M
3300018082\|Ga0184639_10484946	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	627	Open in IMG/M
3300018084\|Ga0184629_10122531	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1295	Open in IMG/M
3300018433\|Ga0066667_10529026	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	975	Open in IMG/M
3300018433\|Ga0066667_12137374	Not Available	519	Open in IMG/M
3300018468\|Ga0066662_10656993	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	992	Open in IMG/M
3300018482\|Ga0066669_10063504	All Organisms → cellular organisms → Bacteria	2403	Open in IMG/M
3300018482\|Ga0066669_10154707	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1693	Open in IMG/M
3300020003\|Ga0193739_1078354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	841	Open in IMG/M
3300020170\|Ga0179594_10265333	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	648	Open in IMG/M
3300020199\|Ga0179592_10527228	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	504	Open in IMG/M
3300024219\|Ga0247665_1027275	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	734	Open in IMG/M
3300024330\|Ga0137417_1034248	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2367	Open in IMG/M
3300024330\|Ga0137417_1119990	Not Available	1064	Open in IMG/M
3300024330\|Ga0137417_1136201	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	774	Open in IMG/M
3300025327\|Ga0209751_10500928	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_40CM_70_11	992	Open in IMG/M
3300025796\|Ga0210113_1063217	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300025905\|Ga0207685_10802706	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	518	Open in IMG/M
3300025917\|Ga0207660_11711774	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300026296\|Ga0209235_1259624	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	534	Open in IMG/M
3300026300\|Ga0209027_1046279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1635	Open in IMG/M
3300026305\|Ga0209688_1075001	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	610	Open in IMG/M
3300026325\|Ga0209152_10007713	All Organisms → cellular organisms → Bacteria	3817	Open in IMG/M
3300026326\|Ga0209801_1116558	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1147	Open in IMG/M
3300026329\|Ga0209375_1097161	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1331	Open in IMG/M
3300026342\|Ga0209057_1052868	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1898	Open in IMG/M
3300026527\|Ga0209059_1048374	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1876	Open in IMG/M
3300026552\|Ga0209577_10402413	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300027169\|Ga0209897_1018031	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300027384\|Ga0209854_1101229	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	516	Open in IMG/M
3300027655\|Ga0209388_1092278	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	870	Open in IMG/M
3300027775\|Ga0209177_10254407	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	650	Open in IMG/M
3300027787\|Ga0209074_10003950	All Organisms → cellular organisms → Bacteria	3295	Open in IMG/M
3300027846\|Ga0209180_10048792	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2331	Open in IMG/M
3300027873\|Ga0209814_10049663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1751	Open in IMG/M
3300027875\|Ga0209283_10974607	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	507	Open in IMG/M
3300031720\|Ga0307469_10934288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	806	Open in IMG/M
3300031753\|Ga0307477_10717015	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	668	Open in IMG/M
3300032954\|Ga0335083_10161852	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300034176\|Ga0364931_0257862	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	574	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.36%
Host-Associated	Host-Associated	3.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.82%
Aquatic	Environmental → Aquatic	4.55%
Plants	Host-Associated → Plants	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Sediment	Environmental → Aquatic → Sediment	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%
Marine	Environmental → Aquatic → Marine	0.91%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.91%
Loam	Environmental → Terrestrial → Soil → Loam	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Sand	Environmental → Terrestrial → Soil → Sand	1.82%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	36.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	12.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002886	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005883	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_302	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027169	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100478221	3300002558	Grasslands Soil	MVTVCTVLPPTERPRVDAVGDGCFATLHADSFRDVLRAARTRRVDALVISVH
JGI25612J43240_10843451	3300002886	Grasslands Soil	MVTVCTVLPAPERPRFDAAGHGCFDTLHADSLREALYVVRRRRVDAVV
JGI25382J43887_101924301	3300002908	Grasslands Soil	MVTVCTVLPPTERPRVDAVGDGCFATLHADSFRDVLRAARTRRVDALVISV
Ga0066674_100741024	3300005166	Soil	MVTVCTVLAPPERPRVDAAGDGYFTALHVDSFRDVLHTARKRR
Ga0066678_104467162	3300005181	Soil	MVTVCTVLPAPERPRLDAAGDGCFTTVHTGSFRDALRAARRKRVDALV
Ga0066671_108619741	3300005184	Soil	MVTVCTVLPAAERPRIDAAGDGCFHTLHTESLREALHVAR
Ga0066676_100562853	3300005186	Soil	MVTVCTVLPPTERPRVDAAGDGCFTTLHTNSLRDALHAAR
Ga0070691_104810271	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MVTVCTVLPAPERPRIDAAGDGCFHTLHAESLREALHVARR
Ga0066689_109356762	3300005447	Soil	MGRMVTVCTILPPPERPRIDAVGDGCFDTLHADSLREVLYVARRRRVDAVI
Ga0070707_1014870221	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVTVCTVLPREERPRIDAAGDGCFTTLHAESLGEARLAARCGRVDAM
Ga0070697_1018587952	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MVTVCTVLPPPERPRIDAVGDGCFDTLHADSLREALYVARR
Ga0066661_102442791	3300005554	Soil	MVTVCTVLPPPERPRLDAAADGCFTTLHAASLREALRAARRKRVDALVLSVHAC
Ga0066692_1000027215	3300005555	Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALR
Ga0066707_100259361	3300005556	Soil	MVTVCTFLPPPERPRVDAAGDGCFTTLHANSLRDALHAARR
Ga0066707_109158551	3300005556	Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVH
Ga0066670_106149652	3300005560	Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTGSFRDALRAAR
Ga0066699_104149982	3300005561	Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHTSSFRDAL
Ga0066699_108788571	3300005561	Soil	MVTVCTVLPPPERPRVDAAADGCFATLHAASLRDALRAARRKRVDALVLSVHACRGEEL
Ga0066693_104117211	3300005566	Soil	MVTVCTVLPLPERPRVDAAADGCFTTLHAASLRDALRAARRKRVDAL
Ga0066693_104657131	3300005566	Soil	MVTVCTVLPPTERPRVDAAGDGCFTTLHANSLRDA
Ga0066705_105811691	3300005569	Soil	MVTVCTVLPPTERPRVDAAGDGCFTTLHTNSLRDALHAARRKR
Ga0066694_101830003	3300005574	Soil	VQRYRLRYMVTVCTVLPPTERPRVDAAGDGCFTTLHANSLRD
Ga0066694_105165021	3300005574	Soil	MVTVCTVLPAPERPRLDAAGDGCFTTLHTTSFRDALRAARRKRVDALVL
Ga0075299_10226132	3300005883	Rice Paddy Soil	MVTVCTVIPAPERPRLDAVGDGCFDTLHAESLREALYV
Ga0066696_100418871	3300006032	Soil	MVTVCTVLPPPERPRLDAAADGCFATFHAASLRDALRAAR
Ga0066665_100333221	3300006796	Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHTSSFRDALRAARRRRVDALVLSVHAC
Ga0066659_113455901	3300006797	Soil	MMRMVTVCTVLPPPERPRIDAAGDGCFDTLHADSLR
Ga0066659_117946092	3300006797	Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSV
Ga0079220_121038341	3300006806	Agricultural Soil	MVTVCTVLPAPERPRLDAAGDGCFTTVHISSFRAALRAARRKRVDALVL
Ga0075420_1019204692	3300006853	Populus Rhizosphere	MVTVCTVLPPPERPRVDAAGDGCFTTYHVDSLRDVLNA
Ga0075436_1001000044	3300006914	Populus Rhizosphere	MVTVCTVLPAPERPRLDAAGDGCFTTVHTSSFRDALRA
Ga0079219_110705992	3300006954	Agricultural Soil	MVTVCTVLPVPERPRLDAAADGCFATLHAASLRDALRAARRKRVDALVLSV
Ga0099791_101404162	3300007255	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHVCRSDELPAV
Ga0099794_100288491	3300007265	Vadose Zone Soil	MVTVCTVLPPPEPPRLDAVGDGCFTTLHATSFRDALRAARRKRVDALVLSV
Ga0066710_1029665111	3300009012	Grasslands Soil	MVTVCTVLPPPERPRIDAAGDGCFTTLHTNSFRDALRA
Ga0066710_1037941111	3300009012	Grasslands Soil	MVTVCTVLPAPERPRLDAAGDGCFTTLHTGSFRDALRAARRKKVDA
Ga0099828_101719521	3300009089	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHACRSDELPAVA
Ga0099828_117282352	3300009089	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHACRSDELP
Ga0099827_106185972	3300009090	Vadose Zone Soil	MGARYRFSRMVTVCTVLPPPERPRLDAVGDGCFTTLHASSFR
Ga0075423_109141813	3300009162	Populus Rhizosphere	MVTVCTVLPAPERPRIDAVGDGCFDTFHAESLREALHVART
Ga0134109_100737933	3300010320	Grasslands Soil	MVTVCTVLPPPERPRIDAVGDGCFDTLHAESLREALYVARRWRVDAVIISVHR
Ga0134067_101361773	3300010321	Grasslands Soil	MVTVCTVLPLPERPRVDAAADGCFTTLHAASLRDALRAARRKRVDALVLSVHACRG
Ga0134084_102486282	3300010322	Grasslands Soil	VQRYRLRCMVTVCTVLPPTERPRVDAAGDGCFTTL
Ga0134084_103375391	3300010322	Grasslands Soil	MVTVCTVLPAPERPRIDAAGHGCFDTLHADSLREALYV
Ga0134086_101638551	3300010323	Grasslands Soil	MVTVCTVLPPTERPRVDAAGDGCFTTLHANSLRDALH
Ga0134080_100333913	3300010333	Grasslands Soil	MVTVCTVLPAPERPRIDAAGDGCFHTLHTDSLREALH
Ga0134063_100246155	3300010335	Grasslands Soil	MVTVCTVLPLPERPRLDAAADGCFTTLHAASLRDALRAARRKRVDALVLSV
Ga0134127_129065541	3300010399	Terrestrial Soil	MVTVCTVLPAPERPRIDAVGDGCFDTLHAESLREVLQVARTRRVDA
Ga0137393_100471761	3300011271	Vadose Zone Soil	MVTVCTLLPQPERSRVDAAGDGCFATLHADSPRELLRTAR
Ga0137365_111376611	3300012201	Vadose Zone Soil	MVTVCTVLPPPERPRIDAAGDGCFDTLHTESLREALHLART
Ga0137363_107731892	3300012202	Vadose Zone Soil	MVTVCTVVPPPERPRLDAVGDGCFTTLHASSFRDA
Ga0137376_101313844	3300012208	Vadose Zone Soil	MVTVCTVLPPPERPRFDAVGDGCFTTLHTSSFRDALRAARRKRVD
Ga0137387_110814862	3300012349	Vadose Zone Soil	MVTVCTVLPAPERPRIDAAGQGCFDTLHADSLREALY
Ga0137366_100592425	3300012354	Vadose Zone Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALRAARRMRV
Ga0137384_101331944	3300012357	Vadose Zone Soil	MAQLPWWRMVTVCTVLPAPERPRIDAAGQGCFDTLHADSLRE
Ga0137384_102141061	3300012357	Vadose Zone Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALRA
Ga0137375_101059891	3300012360	Vadose Zone Soil	MVTVCTVLPPPERPRIDAAGDGCFDTLHADSLHEA
Ga0137373_100228707	3300012532	Vadose Zone Soil	MVTVCAVLPPPERPRLDAAGDGCFTTLHATSFRDALRAARRKRVDAL
Ga0137395_112205341	3300012917	Vadose Zone Soil	MVTVCTVLPPPERPRVDAAGDGSFTALHVDSFRDVLHAA
Ga0137416_103003101	3300012927	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDAL
Ga0137407_110066941	3300012930	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHTSSFRDALRAARRKRV
Ga0134077_100576761	3300012972	Grasslands Soil	MVTVCTVLPPPERPRIDAAGDGYFDTLHADSLREALYVARRRRVDAMVIS
Ga0134077_100784841	3300012972	Grasslands Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALRAARRKRV
Ga0134075_104342142	3300014154	Grasslands Soil	MVTVCTVLSPPERPRIDAAGDGCFTTLHASSFRDALRAARR
Ga0134078_103849421	3300014157	Grasslands Soil	MVTVCTVLPPPERPRLDAAADGCFATFHAASLRDALRAARRKRVDALVL
Ga0134089_104669981	3300015358	Grasslands Soil	MVTVCTVLPPPERPRIDEAGDGYFDTLHADSLREALYVAR
Ga0134069_12459172	3300017654	Grasslands Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDAL
Ga0134083_101517401	3300017659	Grasslands Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHTSSFRDALRAARRKRVDAL
Ga0187778_104586561	3300017961	Tropical Peatland	MGGAYSRHRMVTVCTVLPVPERPRVDAAGDGCFSTLHADSFRDVLSAAR
Ga0184610_10191312	3300017997	Groundwater Sediment	MVTVCTVLPPPERPRIDAAGDGCFDTLHADSLREALY
Ga0184621_100371871	3300018054	Groundwater Sediment	MVTVCTVLPPPERPRIDAAGDGCFDTLHAESLREALYVA
Ga0184639_104849463	3300018082	Groundwater Sediment	MVTICTVVPPPERLRVDAAGDGCFATVHAESFRDAL
Ga0184629_101225313	3300018084	Groundwater Sediment	VTVCTLLPPAERHRIDAVGDGCFVSLHTDSGRELLTAARRRRVDAVVL
Ga0066667_105290261	3300018433	Grasslands Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHTSSFRDALRAARRKRVDALV
Ga0066667_121373742	3300018433	Grasslands Soil	VSPAPPPPAGARRDAAADGCFTTLHAASLRDALRAARRKRVDALVLSV
Ga0066662_106569933	3300018468	Grasslands Soil	MVTVCTVLPPTERPRVDAVGDGCFATLHADSFRDVLRAARTRRVDA
Ga0066669_100635045	3300018482	Grasslands Soil	MVTVCTFLPPPERPRVDAAGDGCFTTPHANSLRDALHAARRNRVD
Ga0066669_101547074	3300018482	Grasslands Soil	MVTMCTVLPPPECPRVDAAGDGSFTALHVDSFRDVLHAARRR
Ga0193739_10783541	3300020003	Soil	MVTICTVVPPPERLRVDAAGDGCFATVHAESFRDALDAARR
Ga0179594_102653331	3300020170	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALV
Ga0179592_105272282	3300020199	Vadose Zone Soil	MVTVCTVLPPPERPRIDAAGDGCFDTLHAESLREVL
Ga0247665_10272751	3300024219	Soil	MVTVCTVLPPIERPRLDAVGDGCFLTLHATSFRDAMRAARRRRVDALVLSVHACRGEE
Ga0137417_10342484	3300024330	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHACRSDELPAVARF
Ga0137417_11199901	3300024330	Vadose Zone Soil	MVTVCTVLPPTERPRLDAAGDGCFTAGDGCFTTLHAN
Ga0137417_11362012	3300024330	Vadose Zone Soil	MVTVCTVLPPPERPRIDAVGDGCFETLHADSLREALHVARRRRVDVVSISDH
Ga0209751_105009282	3300025327	Soil	MVTVCTVLPAPERPRIDAVGDGCFDTLHAESLREALHVARTRRVD
Ga0210113_10632172	3300025796	Natural And Restored Wetlands	MVTVCTVLPREERPRVDAAGDGCFIAVHADSLGEARLAARRG
Ga0207685_108027062	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHACRGDELPAVA
Ga0207660_117117741	3300025917	Corn Rhizosphere	MVTVCTVLPRDERPRVDAAGDGCFTTLHAESLGEARLAAR
Ga0209235_12596241	3300026296	Grasslands Soil	MVTVCTVLPPPERPRIDAAGDGCFDTLHVGHIRYLEGA
Ga0209027_10462794	3300026300	Grasslands Soil	MVTVCTVLPLPERPRLDAAADGCFTTLHAASLRDAL
Ga0209688_10750011	3300026305	Soil	MVTVCTVIPAPERPRLDAVGDGCFNTLHADSLREALYVAR
Ga0209152_100077131	3300026325	Soil	MVTVCTVLPPPERPRLDAAGDGCFTTLHTSSFRDALRAAR
Ga0209801_11165582	3300026326	Soil	MVTICTVLPAPDRPRVDAAGDGCFTTLHAGSFRDAVHAA
Ga0209375_10971611	3300026329	Soil	MVTVCTVLPAPERPRIDAAGHGCFDTLHADSLREA
Ga0209057_10528684	3300026342	Soil	MVTVCTVLPPPERPRLDAAGDGCFTTVHTSSFRDALRAARRKR
Ga0209059_10483744	3300026527	Soil	MVTVCTVLPPTERPRLDAAGDGCFTTLHANSLRDALHAARR
Ga0209577_104024132	3300026552	Soil	MVTVCTVLPATERPRIDAAGDGCFHTLHTESLREALHVAR
Ga0209897_10180311	3300027169	Groundwater Sand	MVTVCTVLARDERPRIDAAGDGCFTTLHADSLSEARLAARCGRVDAM
Ga0209854_11012291	3300027384	Groundwater Sand	MVTICTVLPAPERPRVDAAGDGCFTTLHASSFRDALYTARRKKVDAL
Ga0209388_10922781	3300027655	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHVCRSDELPAVARF
Ga0209177_102544072	3300027775	Agricultural Soil	MVTVCTVLPPIERPRLDAVGDGCFLTLHATSFRDAMRAARRRRVDALVLSVHACRGEELP
Ga0209074_100039506	3300027787	Agricultural Soil	MVTVCTVLPPPERPRLDAAGDGCFITLHTGSLRDALRTA
Ga0209180_100487921	3300027846	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHANSFRDALRAARRKRVDALVLSVHACRGDEL
Ga0209814_100496634	3300027873	Populus Rhizosphere	MVTVCTVLPAPERPRLDAAGDGCFTTVHTSSFRDALRAARRK
Ga0209283_109746072	3300027875	Vadose Zone Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVD
Ga0307469_109342881	3300031720	Hardwood Forest Soil	MVTVCTVLPPPERPRLDAVGDGCFTTLHASSFRDALRAARRKRVDALVLSVHACRGDELP
Ga0307477_107170153	3300031753	Hardwood Forest Soil	MVTVCTFVPSPERPRLDAAGEGCFTALHVDSLRDALATARRRH
Ga0335083_101618522	3300032954	Soil	VVTVCTVLPVPERSRVDAVGDGCFQTVHAESFREVL
Ga0364931_0257862_433_573	3300034176	Sediment	MITVCTVLPAPERPRIDAVGDGCFDTLHAESLRETLQVARAGRMDAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086908

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences