Metagenome / Metatranscriptome Family F086899

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	MSRLGISLAARLVAAALLSAAVVVSAAETEDIKPPRSTLFVGVDTSGSFR
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.45 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (34.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 37.18% β-sheet: 0.00% Coil/Unstructured: 62.82%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13557	Phenol_MetA_deg	1.82
PF00072	Response_reg	0.91
PF07690	MFS_1	0.91
PF05378	Hydant_A_N	0.91
PF17200	sCache_2	0.91
PF00069	Pkinase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.64
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.82

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	63.64 %
Unclassified	root	N/A	32.73 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	63.64 %
Unclassified	root	N/A	32.73 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	63.64 %
Unclassified	root	N/A	32.73 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	42.73 %
Unclassified	root	N/A	32.73 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Candidatus Rokubacteria bacterium 13_1_40CM_68_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	30.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.82 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Candidatus Rokubacteria bacterium 13_1_40CM_68_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	30.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.82 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002561\|JGI25384J37096_10253177	Not Available	513	Open in IMG/M
3300002912\|JGI25386J43895_10024836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1763	Open in IMG/M
3300004268\|Ga0066398_10070801	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	753	Open in IMG/M
3300005167\|Ga0066672_10938408	Not Available	533	Open in IMG/M
3300005174\|Ga0066680_10280330	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1062	Open in IMG/M
3300005174\|Ga0066680_10492559	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	771	Open in IMG/M
3300005174\|Ga0066680_10492560	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	771	Open in IMG/M
3300005174\|Ga0066680_10938889	Not Available	510	Open in IMG/M
3300005176\|Ga0066679_10541869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	758	Open in IMG/M
3300005176\|Ga0066679_10937918	Not Available	543	Open in IMG/M
3300005176\|Ga0066679_10980097	Not Available	527	Open in IMG/M
3300005445\|Ga0070708_102053065	Not Available	529	Open in IMG/M
3300005446\|Ga0066686_11021172	Not Available	536	Open in IMG/M
3300005447\|Ga0066689_10583854	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	705	Open in IMG/M
3300005536\|Ga0070697_100546571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1015	Open in IMG/M
3300005546\|Ga0070696_101144374	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	656	Open in IMG/M
3300005552\|Ga0066701_10136669	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1466	Open in IMG/M
3300005552\|Ga0066701_10611396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	662	Open in IMG/M
3300005554\|Ga0066661_10928194	Not Available	509	Open in IMG/M
3300005558\|Ga0066698_10312628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1088	Open in IMG/M
3300005561\|Ga0066699_11165888	Not Available	530	Open in IMG/M
3300005568\|Ga0066703_10215648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1166	Open in IMG/M
3300005598\|Ga0066706_10449472	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1027	Open in IMG/M
3300006034\|Ga0066656_10066187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	2123	Open in IMG/M
3300006796\|Ga0066665_10245360	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1414	Open in IMG/M
3300006796\|Ga0066665_10731156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	783	Open in IMG/M
3300006797\|Ga0066659_11404187	Not Available	583	Open in IMG/M
3300006844\|Ga0075428_101233510	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	788	Open in IMG/M
3300006847\|Ga0075431_100087497	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3215	Open in IMG/M
3300006847\|Ga0075431_102058877	Not Available	526	Open in IMG/M
3300006876\|Ga0079217_11311646	Not Available	560	Open in IMG/M
3300006903\|Ga0075426_10360770	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1069	Open in IMG/M
3300006903\|Ga0075426_11367648	Not Available	538	Open in IMG/M
3300006903\|Ga0075426_11481735	Not Available	516	Open in IMG/M
3300006903\|Ga0075426_11540556	Not Available	505	Open in IMG/M
3300006904\|Ga0075424_102260316	Not Available	572	Open in IMG/M
3300006914\|Ga0075436_100319755	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1115	Open in IMG/M
3300006914\|Ga0075436_101183905	Not Available	577	Open in IMG/M
3300007076\|Ga0075435_101243983	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	652	Open in IMG/M
3300007258\|Ga0099793_10505706	Not Available	601	Open in IMG/M
3300009088\|Ga0099830_10091694	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2251	Open in IMG/M
3300009147\|Ga0114129_10212382	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2615	Open in IMG/M
3300009792\|Ga0126374_11575378	Not Available	542	Open in IMG/M
3300010046\|Ga0126384_10423239	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300010046\|Ga0126384_11782601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	584	Open in IMG/M
3300010047\|Ga0126382_10952337	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	748	Open in IMG/M
3300010140\|Ga0127456_1102594	Not Available	507	Open in IMG/M
3300010301\|Ga0134070_10021116	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2119	Open in IMG/M
3300010336\|Ga0134071_10676146	Not Available	545	Open in IMG/M
3300010336\|Ga0134071_10771130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	513	Open in IMG/M
3300012189\|Ga0137388_10951050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	794	Open in IMG/M
3300012198\|Ga0137364_10185755	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1518	Open in IMG/M
3300012203\|Ga0137399_10596103	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	929	Open in IMG/M
3300012205\|Ga0137362_11368889	Not Available	593	Open in IMG/M
3300012208\|Ga0137376_10447998	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1121	Open in IMG/M
3300012358\|Ga0137368_10136764	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1830	Open in IMG/M
3300012362\|Ga0137361_11641297	Not Available	563	Open in IMG/M
3300012918\|Ga0137396_10337809	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1115	Open in IMG/M
3300012918\|Ga0137396_11154799	Not Available	549	Open in IMG/M
3300012922\|Ga0137394_11129865	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	647	Open in IMG/M
3300012925\|Ga0137419_10030366	All Organisms → cellular organisms → Bacteria	3302	Open in IMG/M
3300012925\|Ga0137419_10519551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	947	Open in IMG/M
3300012925\|Ga0137419_10788506	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	776	Open in IMG/M
3300012927\|Ga0137416_10540940	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1008	Open in IMG/M
3300012927\|Ga0137416_11645696	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	585	Open in IMG/M
3300012927\|Ga0137416_11914105	Not Available	543	Open in IMG/M
3300012929\|Ga0137404_11255201	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	682	Open in IMG/M
3300012929\|Ga0137404_11676612	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	590	Open in IMG/M
3300012930\|Ga0137407_11933093	Not Available	563	Open in IMG/M
3300012960\|Ga0164301_10748774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	741	Open in IMG/M
3300012976\|Ga0134076_10534270	Not Available	540	Open in IMG/M
3300012987\|Ga0164307_11814942	Not Available	517	Open in IMG/M
3300015241\|Ga0137418_11270787	Not Available	514	Open in IMG/M
3300015264\|Ga0137403_11443398	Not Available	537	Open in IMG/M
3300015264\|Ga0137403_11536531	Not Available	517	Open in IMG/M
3300016387\|Ga0182040_10482046	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	988	Open in IMG/M
3300017656\|Ga0134112_10029899	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300017944\|Ga0187786_10100403	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	973	Open in IMG/M
3300018058\|Ga0187766_10633184	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	733	Open in IMG/M
3300018076\|Ga0184609_10009929	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300018433\|Ga0066667_11787112	Not Available	556	Open in IMG/M
3300025899\|Ga0207642_10327357	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	897	Open in IMG/M
3300025922\|Ga0207646_10337601	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1361	Open in IMG/M
3300025933\|Ga0207706_11477066	Not Available	555	Open in IMG/M
3300026315\|Ga0209686_1075816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1193	Open in IMG/M
3300026326\|Ga0209801_1039135	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2208	Open in IMG/M
3300026326\|Ga0209801_1131571	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1067	Open in IMG/M
3300026328\|Ga0209802_1225552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	684	Open in IMG/M
3300026343\|Ga0209159_1108858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1192	Open in IMG/M
3300026524\|Ga0209690_1257407	Not Available	549	Open in IMG/M
3300026536\|Ga0209058_1139988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1161	Open in IMG/M
3300026542\|Ga0209805_1280753	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	636	Open in IMG/M
3300026552\|Ga0209577_10101751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2328	Open in IMG/M
3300026557\|Ga0179587_10205159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1250	Open in IMG/M
3300026557\|Ga0179587_10798775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	622	Open in IMG/M
3300027324\|Ga0209845_1008723	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1724	Open in IMG/M
3300027379\|Ga0209842_1019873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1300	Open in IMG/M
3300027561\|Ga0209887_1034355	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1147	Open in IMG/M
3300027654\|Ga0209799_1065816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	814	Open in IMG/M
3300027961\|Ga0209853_1091620	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	781	Open in IMG/M
3300028814\|Ga0307302_10616385	Not Available	539	Open in IMG/M
3300031226\|Ga0307497_10511295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	594	Open in IMG/M
3300031562\|Ga0310886_10171937	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1159	Open in IMG/M
3300031640\|Ga0318555_10329676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	826	Open in IMG/M
3300031747\|Ga0318502_10258293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1019	Open in IMG/M
3300031945\|Ga0310913_10264026	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1211	Open in IMG/M
3300032205\|Ga0307472_100650611	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	939	Open in IMG/M
3300032211\|Ga0310896_10268991	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	869	Open in IMG/M
3300034817\|Ga0373948_0152549	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	578	Open in IMG/M
3300034819\|Ga0373958_0137901	Not Available	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.45%
Host-Associated	Host-Associated	14.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.55%
Plants	Host-Associated → Plants	14.55%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.64%
Sediment	Environmental → Aquatic → Sediment	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.91%
Loam	Environmental → Terrestrial → Soil → Loam	6.36%
Sand	Environmental → Terrestrial → Soil → Sand	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	29.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.82%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25384J37096_102531772	3300002561	Grasslands Soil	MSRLGISLTARLVAIALIGAAVAVSAAETEDNKPARSTLFVGIDTSGSFRAAYDDALAFV
JGI25386J43895_100248361	3300002912	Grasslands Soil	MSRLSFSLAARLVAAALLSAAVVVSAAEPEDNKPPRSTLFVGLDTSGSFRSAYDDAL
Ga0066398_100708012	3300004268	Tropical Forest Soil	MSRRGLPLALRVAAALVCAAVAVSPAEPQDNKGPRSTLFVGIDTSGSFRSAYD
Ga0066672_109384081	3300005167	Soil	MSRLGSSLAGRLVAVALLGAAVVVSAAETEENKPPRSTLFVGVDTSGSFR
Ga0066680_102803302	3300005174	Soil	VSRLGVTVVARLVAAALLSVTVVVSAAETEDTKPQRSTLFVGVDTSGSFRFAYDDALTFL
Ga0066680_104925592	3300005174	Soil	MRRPGSSLTARVVAAALLSAAVVVSAAETEDNKPPRSTLFIGVDTSGSFRPAYDDAL
Ga0066680_104925602	3300005174	Soil	MRRAGSSLTARVVAAALLSAAVVVSAAETEDNKPPRSTLFIGVDTSGSFRPAYDDAL
Ga0066680_109388892	3300005174	Soil	VSRLGVSVVARLVAAALLSVAVVVSAAETEDTKPQRSTLFVGVDTSGSFRFAYDDALTFL
Ga0066679_105418691	3300005176	Soil	VSRLGVTVVARLVAAALLSVTVVVSAAETEDTKPQRSTLFVGVDTSGS
Ga0066679_109379181	3300005176	Soil	MRRPGISLTARLVAAALLSVTVAVSAAETEDNKAPRSTLFVGVDTSG
Ga0066679_109800971	3300005176	Soil	MSRLRIPLAARLVAAALISAAVVVSAAAEDNKPPRSTLFVGVDTSGSFRSAYD
Ga0070708_1020530652	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRYLGRPLATRLVVAALLSIAVVASAAETEEIKGPRSTLFVGIDTSG
Ga0066686_110211722	3300005446	Soil	MRRWGSPLVARLLAGALLSVAVVVSAAETEDSKPPRSTLFVGIDTS
Ga0066689_105838541	3300005447	Soil	MRRPGISLTARVVAAALLSVAVVVSAAETEDSKAPRSTLFVGVDTSG
Ga0070697_1005465712	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLGSSLTACLVAVALISIAVVVSPAETEDNKPPRSTLFVGVDTSGSFRF
Ga0070696_1011443741	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LNRLGIALAARLVAVALISVSVAASAAETEGNKPPRSTLFVGVDTSGSFRFAYDD
Ga0066701_101366692	3300005552	Soil	MNRLRTALAARLAAVALFGAAVVVSAAEPEDHKAPRSTLFVGIDTS
Ga0066701_106113961	3300005552	Soil	MSRLGISLAARLVAAALLSAAVVVSAAEAEDNKPPRS
Ga0066661_109281941	3300005554	Soil	MSRLGSSLAGRLVAVALLGAAVVVSAAETEENKPPRSTLFV
Ga0066698_103126282	3300005558	Soil	MSGLGVSLIARLVAAALLSAAVVVSAAETEDNKPQRSTLFVGVDTSGSFRFAYDD
Ga0066699_111658881	3300005561	Soil	MSRLGSSLAGRLVAVALLGAAVVVSAAETEENKPPRSTLFVGV
Ga0066703_102156482	3300005568	Soil	MSRLRIPLAARLVAAALISAAVVVSAAAEDNKPPRSTLFVG
Ga0066706_104494721	3300005598	Soil	MRRAGSSLTARVVAAALLSAAVVVSAAETEDNKPPRSTLFIGVDTSGSFRP
Ga0066656_100661873	3300006034	Soil	MSRLGSSLVARLVATALLSVAVVVSAAETEENKAPRSTLFVGVDTSG
Ga0066665_102453601	3300006796	Soil	MSRLGSSLVARLVATALLSVAVVVSAAETEENKAPRSTLFVGVDTSGSFRPA
Ga0066665_107311561	3300006796	Soil	MSRLRIPLAARLVAAALISAAVVVSAAAEDNKPPRSTLFVGIDTSGSFRSAYDDALT
Ga0066659_114041871	3300006797	Soil	VSRPGRSLIARLVAVALIGAAVAVSAAETEDNKLPRSTLFVGIDTSGSFRAAYDDALAF
Ga0075428_1012335102	3300006844	Populus Rhizosphere	VRRVGSSLVARLVAAALLSVAVVVSAAETDDAKTPRSTLFVGIDTSG
Ga0075431_1000874971	3300006847	Populus Rhizosphere	VRRVGSSLVARLVAAALLSVAVVVSAAETDDAKTPRSTLFVGIDTS
Ga0075431_1020588771	3300006847	Populus Rhizosphere	MSRLSSSLTARLVAVAVLSVAVIVSAAETEDNKPPRS
Ga0079217_113116461	3300006876	Agricultural Soil	MSRLGRSFTARVLAAILVSAAVVVSAGATETSKPVRSTLFVGIDTSGSFRPAYDDALTFVAHY
Ga0075426_103607702	3300006903	Populus Rhizosphere	VSRRGRSLAARLVVAALLGVAAAASSGAAEDMKPPRSTLFVGIDTSGSFRSA
Ga0075426_113676481	3300006903	Populus Rhizosphere	MRRLARSLIARLVAAALLSVAVVVSAAEPEDSKTPRSTLFVGLDTS
Ga0075426_114817351	3300006903	Populus Rhizosphere	MSRLGVTVVARLVAAALLSVTVVVSAAETEDTKPQRSTLFVG
Ga0075426_115405562	3300006903	Populus Rhizosphere	MRGLGRSLITRLTVAALLSVAVVVSAAENEENKTPRSTLFVGIDTSGSFKSAYDD
Ga0075424_1022603162	3300006904	Populus Rhizosphere	MRRRGIALVARLVAVALIGVSVVASAAETEDNKTPRSTLFVGIDTSGSFKSAYDDALAFVAHYLY
Ga0075436_1003197551	3300006914	Populus Rhizosphere	MSRLTRSVAARLVAVALLGAAVAVSAAETEENKAPRSTLFVGIDT
Ga0075436_1011839052	3300006914	Populus Rhizosphere	MRRLARSLIARLVAAALLSVAVVVSAAEPEDSRTPRSTLFVGLDTSGSFRSAYD
Ga0075435_1012439832	3300007076	Populus Rhizosphere	MRYLGRSLAPRLVVAALLSIAVVASAAETEENKGPRSTLFVGIDTSGSFRSAYD
Ga0099793_105057061	3300007258	Vadose Zone Soil	MSRLRISRAARLVAAVLISAAVVVSAAAEDNKPPRSTLFVGVDTSGSFRSAYDDALTFV
Ga0099830_100916941	3300009088	Vadose Zone Soil	MSRLSFSLAARLVAAALLSAAVVVSAAEPEDNKPPRSTLF
Ga0114129_102123821	3300009147	Populus Rhizosphere	VSRLRSSLAARLVAVALLGAAVAVSAAEPEENKTPRSTL
Ga0126374_115753782	3300009792	Tropical Forest Soil	MSRLGSSLTARLVAVAVLSVAVVVSAAETEDNKAPRSTLFVGIDTSGSFRSAYDDA
Ga0126384_104232391	3300010046	Tropical Forest Soil	MSRRGLPLALRVAAALVCAAVAVSPAEPQDNKGPRSTLFVGIDTSGSFR
Ga0126384_117826011	3300010046	Tropical Forest Soil	MRGLGRSLIARLTVAALLSAAVVVSAAENEENKTPRS
Ga0126382_109523372	3300010047	Tropical Forest Soil	MKRPGIALAARLVAVALIGVSVVASAAETDDTKTPRSTLFVGIDTSGSFKSAYDDALTFV
Ga0127456_11025942	3300010140	Grasslands Soil	MSRRGFSLAARLVAAALFSAAVVVSAAETEDNKPPRSTLFVGL
Ga0134070_100211161	3300010301	Grasslands Soil	MNRLRTALAARLAAVALFGAAVVVSAAEPEDHKAPRSTLFVGIDTSGSFRPAYDDALTFV
Ga0134071_106761462	3300010336	Grasslands Soil	MNRLRTALAARLAAVALFGAAVVVSAAEPEDHKAPRSTLFVGVDTSGSFRPAYDD
Ga0134071_107711302	3300010336	Grasslands Soil	MSRGGSSLVARLVATALLSVAVVVSAAETEDSKPPRSTLFVGVDTSGSFRPAYDD
Ga0137388_109510501	3300012189	Vadose Zone Soil	MSRPGISLTARVVAAALLSAAVVVSAAETEDNKAPRSTLFVGVDTSGSFRPAY
Ga0137364_101857551	3300012198	Vadose Zone Soil	VSRLGVSVVARLVAAALLSVAVVVSAAETEDNKPQRSTL
Ga0137399_105961032	3300012203	Vadose Zone Soil	MSRLRVSLAARLIAVALISAAVVASAAAEDNKPPRSTLFVGVDTSG
Ga0137362_113688892	3300012205	Vadose Zone Soil	MSRLRVSLAARLIAVALISAAVVASAAAEDNKPPRSTLFVGVDTSGSFRSAYDDALTFVA
Ga0137376_104479981	3300012208	Vadose Zone Soil	MSGLRISLATRLVATALISAAVVVSAAAAEDTKPPRSTLFV
Ga0137368_101367643	3300012358	Vadose Zone Soil	MSRLGISLAGRLVAAALLSAAVVVSAAETEDIKPPRSTLFVGVD
Ga0137361_116412971	3300012362	Vadose Zone Soil	MSRLRVSLAARLIAVALISAAVVASAAAEDNKPPRSTLFVGVDTSGSFRSAYDDAL
Ga0137396_103378092	3300012918	Vadose Zone Soil	MRRLRVSLTARVAAAVLLSAAVVVSAGETEDNKPPRSTLFVGVDTSGSFRPAYDDALTFV
Ga0137396_111547991	3300012918	Vadose Zone Soil	MRGPGISLTARVVAAALLSLAVVVSAAETEDSKAPRSTLFV
Ga0137394_111298652	3300012922	Vadose Zone Soil	MRRLGRSHAARLVAATLLLGIAVAVSAAETEDTKTPRSTLFVGVDTSGSFRPAYDDAL
Ga0137419_100303664	3300012925	Vadose Zone Soil	MSGLRIPRAARLVAAVVISAAVVVSAAAEDNKPPRSTLFVGVDTSGSFRSAYDDALTFV
Ga0137419_105195511	3300012925	Vadose Zone Soil	MSRLRVSLAARLIAVALISAAVVASAAAEDNKPPRSTLFVGIDTSGSFRSAYDDALT
Ga0137419_107885062	3300012925	Vadose Zone Soil	MRRLRVSLTARVAAAVLLSAAVVVSAGETEDNKPPRSTLFVGVDTSGSFRPAYD
Ga0137416_105409401	3300012927	Vadose Zone Soil	MSGLGVSLIARLVAAALLSAAVVVSAAETEDNKPQRSTLFVG
Ga0137416_116456962	3300012927	Vadose Zone Soil	MSRLRISRAARLVAAVLISAAVVVSAAAEDNKPPRSTLFVGVDT
Ga0137416_119141051	3300012927	Vadose Zone Soil	MSRLSISLTARLVAIALIGAAGVVSAAETEDDKGARSTLFV
Ga0137404_112552012	3300012929	Vadose Zone Soil	MKFLRRSLATRLVVAAVLSIAVVASAAETEENKGPRSTLFVGIDTSGSFRTAYDDA
Ga0137404_116766122	3300012929	Vadose Zone Soil	MSRPGRSLVARLVAVALIGAAVAVSAAETEDNKLPRSTLFVGIDTSG
Ga0137407_119330931	3300012930	Vadose Zone Soil	VSRPGRALVARLVAVALIGAAVAVSAAETEDNKLPRSTLFVGIDTSGSFRAAYDDALAF
Ga0164301_107487742	3300012960	Soil	MRYLGRSLATRLVVAALLSIAVVASAAETEESKGPRSTLFVGIDTSGSFRSAY
Ga0134076_105342701	3300012976	Grasslands Soil	MRRLRVSLTARVVAAALLSAAVVVSAAETEDNKPPRSTLFV
Ga0164307_118149421	3300012987	Soil	MKYLDRSLATRLVVAALLSIAVVASAAETEENKGPR
Ga0137418_112707872	3300015241	Vadose Zone Soil	MSGLGVSLIARLVAAALLSAAVVVSAAETEDNKPQRSTLFVGVDT
Ga0137403_114433982	3300015264	Vadose Zone Soil	MSRLRISLATRLAAAALISAAVVVSAAAEDNKPPRSTLFV
Ga0137403_115365312	3300015264	Vadose Zone Soil	MKFLRRSLATRLVVAAVLSIAVVASAAETEENKGPRSTLFVGI
Ga0182040_104820462	3300016387	Soil	MSRRGISLTARLVAAALFSAVVVVSAAEPEDTKAPRSTLFVGLDTSGSFRAAYDDAA
Ga0134112_100298993	3300017656	Grasslands Soil	MRRLRVSLTARVVAAALLSAAVVVSAAETEDNKPPRSTLFVGVDTSGSFR
Ga0187786_101004031	3300017944	Tropical Peatland	MRRPGRSLIARLTIAALLSVAVVVSAAENEDTRTPRSSLFIGLDTSGSFKSAYEDAL
Ga0187766_106331841	3300018058	Tropical Peatland	MRRLGRSLIARLTVAALLSVAVVVSAAENDDNKAPRSTLFIGLDTSGSFKSAYDDA
Ga0184609_100099294	3300018076	Groundwater Sediment	MSRLGISLAARLVAAALLSAAVVVSAAETEDIKPPRSTLFVGVDTSGSFR
Ga0066667_117871121	3300018433	Grasslands Soil	VSRPGRALVARLVAVALIGAAVAVSAAETEDNKLPRSTLFVGIDTSGSFR
Ga0207642_103273572	3300025899	Miscanthus Rhizosphere	MRYLGRSLATRLVVAALLSIAVVASATEPEENKGPRSTLFV
Ga0207646_103376011	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSRLGSSLTACLVAVALISIAVVVSPAETEDNKPPRSTLFVGVDTSGSFRFAYDDALT
Ga0207706_114770662	3300025933	Corn Rhizosphere	MRYLGRPLATRLVVAALLSIAVVASAAETEEIKGPRSTLFVGIDTSGSFRTAYDDAITFVAEA
Ga0209686_10758162	3300026315	Soil	MSRPGSSLAARLVLAAVLSAAVVVSAAETEGNKPPR
Ga0209801_10391351	3300026326	Soil	MSRLRISLAARLVAVAVISAAVVVSAAAEDNKPPRSTLFVGIDTSGSFRSAYDDAL
Ga0209801_11315711	3300026326	Soil	MSRLGSSLVARLVATALLSVAVVVSAAETEENKAPRSTLFVG
Ga0209802_12255521	3300026328	Soil	MSRLRISLAARLVAAAVISAAVVVSAAAEDSKPPRSTLFVGIDTSGSFRSAYDAAL
Ga0209159_11088582	3300026343	Soil	MRRPGRSLAARLVAVALLSAAVVVSAAEPEDNKAPRSTLFVGIDTSGSFRPAYDDALTFF
Ga0209690_12574071	3300026524	Soil	MRRPGSSLTARVVAAALLSAAVVVSAAETEDKKPPRSTLFIGVDTSGSFRP
Ga0209058_11399881	3300026536	Soil	MRRLGISLAARLVAAALLSVAVVVSAAETEDNKLPRPTLFV
Ga0209805_12807532	3300026542	Soil	MSALRISFAIRLAAVALISAAVVVSAAAEDNKPPRSTLFVGVDTSGSFRSAYDDALT
Ga0209577_101017513	3300026552	Soil	MNRLRTALAARLAAVALFGAAVVVSAAEPEDHKGPRSTL
Ga0179587_102051591	3300026557	Vadose Zone Soil	MTRLRVSLAARLVAVALISAAVVASAAAEDNKPPRSTLFVGVD
Ga0179587_107987751	3300026557	Vadose Zone Soil	MSGLRIPRAARLVAAVVISAAVVVSAAAEDNKPPRSTLFVGVDTSGSFR
Ga0209845_10087233	3300027324	Groundwater Sand	MRRPGASLAARLVAAALLSVAVAVSAAETEYNKPPRSTLF
Ga0209842_10198732	3300027379	Groundwater Sand	MRRPGASLAARLVAAALLSVAVAVSAAETEYNKPPRSTLFVGVDTSGSFRSAY
Ga0209887_10343552	3300027561	Groundwater Sand	MRRLGRSLTARVVAAALLSAAVVVSAAEAEDNKPPRSTLFVGVDTSGSFRPAYDD
Ga0209799_10658162	3300027654	Tropical Forest Soil	MSRLGVYVIARLVVAVLLSGAVVVSAAETEENKPQRSTL
Ga0209853_10916201	3300027961	Groundwater Sand	MRRPGASLAARLVAAALLSVAVAVSAAETEYNKPPRSTLFVGVD
Ga0307302_106163852	3300028814	Soil	MSRLGISLAARLVAAALLSAAVVVSAAETEDIKPPRSTLFVGVDT
Ga0307497_105112951	3300031226	Soil	MRYLGRSLATRLVVAALLSIAVVASAAETEENKGPRSTLFVGIDTSGSFRPAY
Ga0310886_101719371	3300031562	Soil	MKYLDRSLAARLVVAALLSIAVVASAAETEENKGPRSTLFVGIDT
Ga0318555_103296761	3300031640	Soil	MRRLGRSLIARLTVAALLSVAVVVSAAENDDNKAPRSTLF
Ga0318502_102582931	3300031747	Soil	MSRRGISLTARLVAAALFSAVVVVSAAEPEDTKAPRSTLFVGL
Ga0310913_102640262	3300031945	Soil	MSRRGISLTARLVAAALFSAVVVVSAAEPEDTKAPRSTL
Ga0307472_1006506111	3300032205	Hardwood Forest Soil	MKYLGRSLAARLVVAALLSIAVVASAAETEENKGPRSTLFVGIDTSGSFRS
Ga0310896_102689912	3300032211	Soil	MSRLGRSLIARVVAAAVLSVAVVVSAAENEETKAPRSTLFIGVDTSGSFR
Ga0373948_0152549_2_139	3300034817	Rhizosphere Soil	MKYLDRSLATRLVVAALLSIAVVASAAETEENKGPRSTLFVGIDTS
Ga0373958_0137901_2_178	3300034819	Rhizosphere Soil	MKYLDRSLAARLVVAALLSIAVVASAAETEENKGPRSTLFVGIDTSGSFRSAYDDAITF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences