Metagenome / Metatranscriptome Family F086867

Basic Information
Family ID	F086867
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	46 residues
Representative Sequence	AKSNTVAAIEAFQSRSNISIDGLIEPDSQTWQALLQAAGGT
Number of Associated Samples	100
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.36 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Most Common Taxonomy
Group	Bacteria (99.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (41.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.364 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.88% β-sheet: 0.00% Coil/Unstructured: 68.12%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01551	Peptidase_M23	28.18
PF03734	YkuD	25.45
PF00472	RF-1	1.82
PF05990	DUF900	1.82

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	25.45
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	25.45
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	1.82
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	1.82
COG4782	Esterase/lipase superfamily enzyme	General function prediction only [R]	1.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.09 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.09 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.09 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	31.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	31.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.82 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Name	Rank	Taxonomy	Distribution
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8864296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1024	Open in IMG/M
2170459003\|FZ032L002G7V0F	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
2170459007\|GKWS7RC02H274W	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	511	Open in IMG/M
2170459013\|GO6OHWN02F5Q7M	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
2228664022\|INPgaii200_c0998488	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300000955\|JGI1027J12803_100013508	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300000955\|JGI1027J12803_101130516	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300000955\|JGI1027J12803_101445163	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300001991\|JGI24743J22301_10033929	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300004479\|Ga0062595_102413134	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300004643\|Ga0062591_101331455	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300005093\|Ga0062594_100712933	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300005186\|Ga0066676_10355961	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300005289\|Ga0065704_10028798	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1156	Open in IMG/M
3300005338\|Ga0068868_101036372	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	752	Open in IMG/M
3300005340\|Ga0070689_100802213	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	828	Open in IMG/M
3300005347\|Ga0070668_101705112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	578	Open in IMG/M
3300005450\|Ga0066682_10108271	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300005450\|Ga0066682_10555883	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300005554\|Ga0066661_10520785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	716	Open in IMG/M
3300005598\|Ga0066706_10779775	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005764\|Ga0066903_105981746	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	638	Open in IMG/M
3300005840\|Ga0068870_11370341	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300006031\|Ga0066651_10555704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	609	Open in IMG/M
3300006032\|Ga0066696_10801679	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300006034\|Ga0066656_11089125	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300006059\|Ga0075017_100818002	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300006797\|Ga0066659_10404190	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300009012\|Ga0066710_100818250	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300009012\|Ga0066710_102293113	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300009137\|Ga0066709_102082620	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300009137\|Ga0066709_104651412	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300009176\|Ga0105242_10469150	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300009553\|Ga0105249_10221102	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300010040\|Ga0126308_10977419	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	592	Open in IMG/M
3300010154\|Ga0127503_11057981	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300010304\|Ga0134088_10050118	All Organisms → cellular organisms → Bacteria	1917	Open in IMG/M
3300010333\|Ga0134080_10074909	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1363	Open in IMG/M
3300010358\|Ga0126370_10943592	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300010360\|Ga0126372_12945356	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	528	Open in IMG/M
3300010362\|Ga0126377_13002030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	545	Open in IMG/M
3300010366\|Ga0126379_11005344	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	939	Open in IMG/M
3300012201\|Ga0137365_10559758	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300012204\|Ga0137374_10031206	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5824	Open in IMG/M
3300012204\|Ga0137374_10031838	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	5753	Open in IMG/M
3300012207\|Ga0137381_10367513	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300012207\|Ga0137381_10378439	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300012211\|Ga0137377_11431674	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300012285\|Ga0137370_10749581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	606	Open in IMG/M
3300012349\|Ga0137387_10071673	All Organisms → cellular organisms → Bacteria	2362	Open in IMG/M
3300012353\|Ga0137367_10107210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2056	Open in IMG/M
3300012354\|Ga0137366_10475738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	904	Open in IMG/M
3300012358\|Ga0137368_10049860	All Organisms → cellular organisms → Bacteria	3562	Open in IMG/M
3300012469\|Ga0150984_107175321	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300012582\|Ga0137358_10751078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	651	Open in IMG/M
3300012907\|Ga0157283_10369271	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300012911\|Ga0157301_10460603	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012922\|Ga0137394_10777310	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300012924\|Ga0137413_10669059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	784	Open in IMG/M
3300012925\|Ga0137419_10343091	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1153	Open in IMG/M
3300012929\|Ga0137404_10670779	All Organisms → cellular organisms → Bacteria	936	Open in IMG/M
3300012941\|Ga0162652_100029948	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	811	Open in IMG/M
3300012972\|Ga0134077_10220880	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300012975\|Ga0134110_10476362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	564	Open in IMG/M
3300012985\|Ga0164308_11162078	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300012987\|Ga0164307_10676766	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300012987\|Ga0164307_10758161	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300012988\|Ga0164306_11644254	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300013296\|Ga0157374_10117500	All Organisms → cellular organisms → Bacteria	2563	Open in IMG/M
3300014150\|Ga0134081_10114681	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300014154\|Ga0134075_10584401	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300014325\|Ga0163163_11063348	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300015053\|Ga0137405_1193215	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300015242\|Ga0137412_10278442	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300015245\|Ga0137409_10451293	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300015374\|Ga0132255_103426064	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300017659\|Ga0134083_10252367	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300018051\|Ga0184620_10020739	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300018054\|Ga0184621_10291708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	576	Open in IMG/M
3300018061\|Ga0184619_10128747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1149	Open in IMG/M
3300018072\|Ga0184635_10158450	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300019874\|Ga0193744_1100433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	536	Open in IMG/M
3300019881\|Ga0193707_1141772	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300019885\|Ga0193747_1003148	All Organisms → cellular organisms → Bacteria → Proteobacteria	4094	Open in IMG/M
3300019999\|Ga0193718_1017196	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300020004\|Ga0193755_1126389	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300020199\|Ga0179592_10062765	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300021413\|Ga0193750_1042949	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300021560\|Ga0126371_11463586	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300025908\|Ga0207643_11059709	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300025930\|Ga0207701_10753848	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300025930\|Ga0207701_11264379	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300025933\|Ga0207706_11633723	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300025944\|Ga0207661_10914012	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300025945\|Ga0207679_12016811	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	525	Open in IMG/M
3300025961\|Ga0207712_11325005	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300025986\|Ga0207658_10481359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1103	Open in IMG/M
3300026067\|Ga0207678_10614850	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300026088\|Ga0207641_11560776	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300026316\|Ga0209155_1100292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1047	Open in IMG/M
3300026335\|Ga0209804_1196908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	847	Open in IMG/M
3300026536\|Ga0209058_1237397	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300027717\|Ga0209998_10126554	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	647	Open in IMG/M
3300028784\|Ga0307282_10350090	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300028881\|Ga0307277_10249671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	783	Open in IMG/M
3300031057\|Ga0170834_105055101	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031122\|Ga0170822_12366372	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031446\|Ga0170820_17840860	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1116	Open in IMG/M
3300032059\|Ga0318533_11134156	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.73%
Host-Associated	Host-Associated	17.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.27%
Plants	Host-Associated → Plants	17.27%
Aquatic	Environmental → Aquatic	5.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.27%
Sediment	Environmental → Aquatic → Sediment	4.55%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Loam	Environmental → Terrestrial → Soil → Loam	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.55%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.64%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02721810	2088090015	Soil	AAIEAFQSRFNISIGGLIEPGSQTWQALLQAAGSN
E4A_03429740	2170459003	Grass Soil	RPPQRSNTVAAIEAFQRRSNIPITGLIEPGSQAWQALLQGAGET
L02_00961030	2170459007	Grass Soil	KDLDGKIARPPQRSNTVAAIEAFQRRSNIPITGLIEPGSQAWQALLQGAGET
N57_02163660	2170459013	Grass Soil	SNTVNAIEAFQSRSNISIDGLIEPDSQTWQALLQAAGGS
INPgaii200_09984881	2228664022	Soil	VAAIEAFQGRSNISIDGLIEPGSQTWQSLLQATGGP
JGI1027J12803_1000135082	3300000955	Soil	IARQSAKSNTVAAIEAFQSRSNISIDGLIEPGSQTWRALLQAAGDT*
JGI1027J12803_1011305161	3300000955	Soil	RQSAKSNTVAAIEAFQRRSNVPIDGLIEPGSQTWQSLLQAVGGP*
JGI1027J12803_1014451632	3300000955	Soil	TSNTVAAIEAFQSRSNSSIDGLIDPASQTWQALMQAAGGT*
JGI24743J22301_100339291	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	DGKIARPPRNSNTVNAIEAFQSRLNISIDGLIEPDSQTWVALLQAASGS*
Ga0062595_1003826031	3300004479	Soil	APQLDPKGIDGKIARLPAKSNTAAAIEALQSRCNISIGSLIEPGSETWRALLQAAGAT*
Ga0062595_1024131342	3300004479	Soil	RPPAKSNTVAGVEAFQSLSNISINGLIEPGSQTWQALLQAAGES*
Ga0062591_1013314552	3300004643	Soil	GVDGKIARPPRNSNTVNAIEAFQSRLNISIDGLIEPDSQTWVALLQAASGS*
Ga0062594_1007129332	3300005093	Soil	SNTVNAIEAFQRRSNISVDGLIEPESQTWRALLQAAGGT*
Ga0066676_103559611	3300005186	Soil	SNTVAAIEAFQSHSNISIDGLIEPGSQTWQALLQAAGET*
Ga0065704_100287982	3300005289	Switchgrass Rhizosphere	LLRTAAQKLQAPQLDPKGVDGKIAQPPRNSNTVNAIVAFQSHSNISIDGLIKPESQTWRALLLAGGGS*
Ga0068868_1010363721	3300005338	Miscanthus Rhizosphere	VDGKIARQSAKSNTVAAIEAFQGRSNIPITGLIEPGSQAWQALLQGAGET*
Ga0070689_1008022131	3300005340	Switchgrass Rhizosphere	RQSAKSNTVAAIEAFQSRSNIPITGLIEPGSQAWQALLQVAGET*
Ga0070668_1017051122	3300005347	Switchgrass Rhizosphere	SNTVAAIEAFQSRSSIPITGLIEPDSQAWQALLQAAGEP*
Ga0066682_101082711	3300005450	Soil	KIARPPATSNTVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGS*
Ga0066682_105558832	3300005450	Soil	KIARPPATSNTVAAIEAFQSRSNISIDGLIDPASQTWQALVQAAGGT*
Ga0066661_105207851	3300005554	Soil	LQAPQLDPKGVDGKIARPPAKSNTVAAIEAFQSLSNISITGLIEPGSQAWRALLQGAGET
Ga0066706_107797751	3300005598	Soil	NTVAAIEAFQSRSNISIDGLIERTSQTWQALLQAAGGT*
Ga0066903_1059817462	3300005764	Tropical Forest Soil	NTVAAIKAFQSRSNISITGLIEPGSQAWQALLQAAGET*
Ga0068870_113703412	3300005840	Miscanthus Rhizosphere	VDGKIARPPRNSNTVNAIEAFQSRLNISIDGLIEPDSQTWVALLQAASGS*
Ga0066651_105557042	3300006031	Soil	QLDPKGVDGKIARPPAKSNTVAAIEAFQSLSNISITGLIEPDSQAWRALLQGAGKT*
Ga0066696_108016791	3300006032	Soil	SNTVAAIEAFQRHSNVPIDGLIEPSSQTWQSLVQPAGGL*
Ga0066656_110891252	3300006034	Soil	KIARPPATSNTVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGT*
Ga0075017_1008180023	3300006059	Watersheds	AAQKAHLPQLDPHGVDGKIARPPAKSNTVAAIEALESASMLTVDGLIAPGSPAWQALLKAAS*
Ga0066659_104041903	3300006797	Soil	DGKMARAPATSDTVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGA*
Ga0066710_1008182503	3300009012	Grasslands Soil	DGKIARQSAKSNTVAAIEAFQSHSNISISGLIEPGSQTWQALLQAAGET
Ga0066710_1022931132	3300009012	Grasslands Soil	ARPPATSDTVAAIEAFQSRSNISIDGLIDPASQTWQALLQGAGGT
Ga0066709_1020826202	3300009137	Grasslands Soil	ARPPATSDTVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGT*
Ga0066709_1046514122	3300009137	Grasslands Soil	ARPPATSDTVAAIEAFQSRSNISIDGLIDPASQTWQALLQGAGGT*
Ga0105242_104691501	3300009176	Miscanthus Rhizosphere	NTVNAIEAFQSRLSISVDGLIEPGSQTWLALLQAAGGS*
Ga0105249_102211023	3300009553	Switchgrass Rhizosphere	SNTVAAIEAFQSRSNISIDGLIEPGSQAWQALLQAANGS*
Ga0126308_109774191	3300010040	Serpentine Soil	DGRIARQPAKSNTVAAIEAFQSRSNISITGLIEPDSQAWQALLHGTGES*
Ga0127503_110579811	3300010154	Soil	KIARPPRNSNTVNAIEAFQSRSNISVDGLIATDSQTWQALLQAAGGS*
Ga0134088_100501184	3300010304	Grasslands Soil	IARPPAKSNTVAAIEALQSRSNISIDGLIERTSQTWQALLQAAGGT*
Ga0134080_100749091	3300010333	Grasslands Soil	ARPPATSNTVAAIEAFQSRSNISIDGLIERTSQTWQALLQAAGGT*
Ga0126370_109435921	3300010358	Tropical Forest Soil	AAAQKLQASELDPKGIDGKITRPPGHSNTTAAIEALQARFNISIDGLIEPDSQTWRALVQAAAGT*
Ga0126372_129453561	3300010360	Tropical Forest Soil	RTSNTVAAIKAFQSRSTISVDGLIEPGDKTWQALLHAAGET*
Ga0126377_130020302	3300010362	Tropical Forest Soil	IARQSAKSNTVAAIKAFQKRSNISVDGMIEPGSQAWLALLQAAGQT*
Ga0126379_110053442	3300010366	Tropical Forest Soil	AAIEAFQSRSNIAIDGVIEPGSETLQALLLGAGKT*
Ga0137365_105597581	3300012201	Vadose Zone Soil	TVAAIEAFQSRSNISIDGLIEPGSQTWQALMQAAGAT*
Ga0137374_100312061	3300012204	Vadose Zone Soil	QLDPKGVDGKIARPPAKSNTVAAIEALQSRSNISIDGLIEPGSQTWQALTQAAGGT*
Ga0137374_100318381	3300012204	Vadose Zone Soil	QLDPKGVDGKIARPPAKSNTVAAIEALQSRSNISIDGLIERTSQTWQALLQAAGGT*
Ga0137381_103675132	3300012207	Vadose Zone Soil	GKIARPPATSNTVAAIEAFQSRSNISIDGLIERTSQTWQALLQAAGGT*
Ga0137381_103784391	3300012207	Vadose Zone Soil	TSNTVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGT*
Ga0137377_114316742	3300012211	Vadose Zone Soil	KGVDGKIARPPATSNTVAAIEAFQSRSNISIDGLIEPGSQTWQALMQAAGAT*
Ga0137370_107495811	3300012285	Vadose Zone Soil	LETAAQKLQAPDLDPKGVDGKIAHDSARSNTVAAIEAFQSLSNISITGLIEPGSQAWRALLQGAGET*
Ga0137387_100716734	3300012349	Vadose Zone Soil	GKIARPPATSNTVAAIEAFQSRSNISIDGLIDPASQTWQALVQAAGGT*
Ga0137367_101072101	3300012353	Vadose Zone Soil	GKSNTVAAIEAFQSRFNISIDGLIEPGSQTWQVLLQAADGT*
Ga0137366_104757381	3300012354	Vadose Zone Soil	QLDPKGVDGKIARPPAKSNTVAAIEAFQSLSNISITGLIEPDSQAWRALLQGAGET*
Ga0137368_100498605	3300012358	Vadose Zone Soil	PGKSNTVAAIEAFQSRFNISIDGLIEPGSQTWQVLLQAADGT*
Ga0150984_1071753211	3300012469	Avena Fatua Rhizosphere	NTVNAIEAFQGRSNISVDGLIERDSQTWQALLQAAIGS*
Ga0137358_107510781	3300012582	Vadose Zone Soil	KIARPPAKSNTVAAIEAFQSLSNISITGLIEPGSQAWRALLQGAGKT*
Ga0157283_103692711	3300012907	Soil	KGVDGKIARPPRNSNTVNAIEAFQSRSSISIDGLIEPDSPTWLALLQAAGGS*
Ga0157301_104606031	3300012911	Soil	PPRNSNTVNAIEAFQSRSNISVDGLIEPGSQTWLALLQAAGGS*
Ga0137394_107773102	3300012922	Vadose Zone Soil	RPPRNSNTVNAIEAFQRRSNISIDGLIEPDSQTWRALVQAAGSS*
Ga0137413_106690591	3300012924	Vadose Zone Soil	KLQAPQLDPKGVDGKIARPPAKSNTVAAIEAFQSLSNISITGLIEPDSQAWRALLQGAGET*
Ga0137419_103430912	3300012925	Vadose Zone Soil	NTVAAIEAFQSRSNIPITGLIEPGSQTWQALLQGASET*
Ga0137404_106707791	3300012929	Vadose Zone Soil	AKSNTVAAIEAFQSRSNISIDGLIEPDSQTWQALLQAAGGT*
Ga0162652_1000299482	3300012941	Soil	PKGVDGKIARQSAKSSTVVAIEAFQSRSNISITGLIEPGSQALQALLQGAGET*
Ga0134077_102208802	3300012972	Grasslands Soil	GKIAQVSAKSNTVAAIEAFQSRSNISIDGLIEPDSQTWQALIQAAGGT*
Ga0134110_104763621	3300012975	Grasslands Soil	PELDPKGVDGKIARPPAKSNTVAAIEAFQSLSNISITGLIEPDSQAWRALLQGAGET*
Ga0164308_111620781	3300012985	Soil	VAAIEAFQSRSNISIDGLIEPGSQAWQALLQAAGGV*
Ga0164307_106767661	3300012987	Soil	DGKIARPPRNSNAVNAIDAFQSRSSISSDGLIEPDSPTWLALLQAAGGS*
Ga0164307_107581611	3300012987	Soil	TVNAIEAFQSRSNISIDGLIEPDSQTWQALLQAAGGS*
Ga0164306_116442541	3300012988	Soil	TVAAIEAFQSRSNISIDGLIEPGSQAWQALLQAAGGV*
Ga0157374_101175004	3300013296	Miscanthus Rhizosphere	VDGKIARLPGKSNTVAAIEAFQSRSNISITGLIEPGSQAWQALLQGAGET*
Ga0134081_101146811	3300014150	Grasslands Soil	TVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGS*
Ga0134075_105844012	3300014154	Grasslands Soil	VAAIEAFQSRSNISIDGLIEPTSQTWQALLQAAGGT*
Ga0163163_110633481	3300014325	Switchgrass Rhizosphere	AAIEAFQSRSSIPITGLIEPDSQAWQALLQAAGGS*
Ga0137405_11932154	3300015053	Vadose Zone Soil	IARPPATSNTVAAIEAFQSRSNTSIDGLIEPDSQTWQELMQAAGGT*
Ga0137412_102784422	3300015242	Vadose Zone Soil	TVNAIEAFQSRSNISIDGLMEPDSQTWRALVQAAGGS*
Ga0137409_104512931	3300015245	Vadose Zone Soil	KIARPPRNSNTVNAIEAFQSRSNISIDGLIEPDSQTWRALVQAAGGS*
Ga0132255_1034260641	3300015374	Arabidopsis Rhizosphere	IARPPGKSNTVAAIEAFQSRSNISIDGLIEPESETWRALLQAAGGS*
Ga0134083_102523671	3300017659	Grasslands Soil	TVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGT
Ga0184620_100207391	3300018051	Groundwater Sediment	LIARPPRKSNTVAAIEAFQSRANISIDGVIEPGSQTWQALLQAAGGS
Ga0184621_102917081	3300018054	Groundwater Sediment	APQLDPKSIDGKIARPPRNSNTVAAIEAFQSRSNISITGLIEPGSQAWQALLQGAGET
Ga0184619_101287472	3300018061	Groundwater Sediment	LQAPELDPKGVDGKIGRQSAKSNTVAAIEAFQNRSNISITGLIEPDSQTLQALLEGAGET
Ga0184635_101584501	3300018072	Groundwater Sediment	RPPRNSNTVNAIEAFQSRSNISIDGLIEPDSQTWQGLLQAAGGS
Ga0193744_11004331	3300019874	Soil	GKIARPPRNSNTVAAIEAFQSRSNISITGLIEPDSQAWQALLQGAGEA
Ga0193707_11417722	3300019881	Soil	QAPQLDPKGVDGKIAQPPRNSNTVAAIEAFQSRSNISIDGLIEPESQTLQALLQAAGGS
Ga0193747_10031487	3300019885	Soil	NTVGAIEAFQSRSNISIDGLIEPASQTWQALLQAVGGT
Ga0193718_10171961	3300019999	Soil	PKGVDGKIARPPVTSNTVAAIEAFQSRSNISIDGLTEPDSQTWQALIQAAGGT
Ga0193755_11263891	3300020004	Soil	NTVAVIEAFQSRSNISIDGLIEPGSQTWQALLQAAGGT
Ga0179592_100627651	3300020199	Vadose Zone Soil	AAIEAFQSRSNISITGLIEPDSQTWQALLQGAGET
Ga0193750_10429491	3300021413	Soil	PPATSNTVAAIEAFQSRSNISIDGLIDPASQTWQALVQAAAGT
Ga0126371_114635862	3300021560	Tropical Forest Soil	TVNAIEAFQSRSNISVDGLIEPDSQTWQTLLQAAGGS
Ga0207643_110597092	3300025908	Miscanthus Rhizosphere	KGVDGKIARPPRNSNTVNAIEAFQSRLNISIDGLIEPDSQTWVALLQAASGS
Ga0207701_107538481	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VAAIEAFQSRSNISIDGLIEPGSQAWQALLQAANGS
Ga0207701_112643791	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VAAIEAFQSRSNISIDGLIEPGSQAWQALLQAADGS
Ga0207706_116337231	3300025933	Corn Rhizosphere	STVKAIEAFQSSSSHPIDGLIEPGDQTWNALLQAAG
Ga0207661_109140121	3300025944	Corn Rhizosphere	KGVDGKIARPPRNSNTVNAIEAFQSRSSISIDGLIEPDSPTWLALLQAAGGS
Ga0207679_120168111	3300025945	Corn Rhizosphere	KGVDGKIARLPGKSNTVAAIEAFQSRSNISITGLIEPGSQAWQALLQGAGET
Ga0207712_113250051	3300025961	Switchgrass Rhizosphere	SNTVAAIEAFQSRSNISIDGLIEPGSQAWQALLQAANGS
Ga0207658_104813592	3300025986	Switchgrass Rhizosphere	PPRNSNTVAAIEAFQSRSNISIDGLIEPGSQAWQALLQAADGS
Ga0207678_106148501	3300026067	Corn Rhizosphere	NSNTVNAIEAFQSRSNISIDGLIEPDSQTWQALLQAAGGS
Ga0207641_115607762	3300026088	Switchgrass Rhizosphere	SNTVNAIEAFQSRSSISIDGLIEPDSPTWLALLQAAGGS
Ga0209155_11002921	3300026316	Soil	QAPHLDPKGVDGKIARPPAKSNTVAAIEAFQSLSNISITGLIEPDSQAWRALLQGAGKT
Ga0209804_11969082	3300026335	Soil	NTVAAIEAFQSLSNISITGLIEPDSQAWRALLQGAGET
Ga0209058_12373972	3300026536	Soil	DGKIARPPATSNTVAAIEAFQSRSNISIDGLIDPASQTWQALLQAAGGS
Ga0209998_101265541	3300027717	Arabidopsis Thaliana Rhizosphere	KSNTVAAIEAFQSRFNISIGGLIEPGSQTWQALLQAAGSN
Ga0307282_103500901	3300028784	Soil	AAIEAFQGRSNISIDGLIEPGSQTWQALMQAAGGT
Ga0307277_102496711	3300028881	Soil	IARLPGKSNTVAAIEAFQSRSNISITGLIEPGSQAWQALLQAAGET
Ga0170834_1050551011	3300031057	Forest Soil	TSNTVAAIEAFQGRYTSSVDGLIKPDSQTWQALLQAAGGS
Ga0170822_123663722	3300031122	Forest Soil	SNTVAAIEAFQSCSNISIDGLIDPASQTWQALLQAAGGT
Ga0170820_178408601	3300031446	Forest Soil	IARQSAKSNTVAAIEAFQSRSNISITGLIEPDSQAWQTLLQGAGET
Ga0318533_111341561	3300032059	Soil	SNTVAAIEAFQSRSNISISGLIEPESRTWQALLEAAGGS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086867

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign