Metagenome / Metatranscriptome Family F086824

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086824
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	38 residues
Representative Sequence	MTHFKHAHGTLGVEMIEDTNTHTKLGDRGFKVYERLREL
Number of Associated Samples	24
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	14
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (88.182 % of family members)
Environment Ontology (ENVO)	Unclassified (98.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (98.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.25% β-sheet: 0.00% Coil/Unstructured: 50.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01555	N6_N4_Mtase	32.73
PF13392	HNH_3	13.64
PF00145	DNA_methylase	10.00
PF13481	AAA_25	0.91
PF07463	NUMOD4	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0863	DNA modification methylase	Replication, recombination and repair [L]	32.73
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	32.73
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	32.73
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	10.00

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
All Organisms	root	All Organisms	36.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Viruses	superkingdom	All Organisms → Viruses	25.45 %
cellular organisms	root	All Organisms → cellular organisms	10.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.91 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	6.36 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	6.36 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6.36 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	2.73 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1.82 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Marinilabiliales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
unclassified Bacteroidales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales	1.82 %
Weeksellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Marinilabiliaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.64 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.64 %
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	1.82 %
Weeksellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Carboxylicivirga	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Carboxylicivirga	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000115\|DelMOSum2011_c10095155	Not Available	991	Open in IMG/M
3300006029\|Ga0075466_1047661	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300006803\|Ga0075467_10094521	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1786	Open in IMG/M
3300006803\|Ga0075467_10098477	All Organisms → Viruses → Predicted Viral	1742	Open in IMG/M
3300006920\|Ga0070748_1067928	All Organisms → Viruses → Predicted Viral	1391	Open in IMG/M
3300006920\|Ga0070748_1115106	All Organisms → Viruses → Predicted Viral	1017	Open in IMG/M
3300006920\|Ga0070748_1211362	Not Available	706	Open in IMG/M
3300006920\|Ga0070748_1322546	Not Available	547	Open in IMG/M
3300006920\|Ga0070748_1335876	Not Available	534	Open in IMG/M
3300007538\|Ga0099851_1070934	All Organisms → Viruses → Predicted Viral	1349	Open in IMG/M
3300007538\|Ga0099851_1080510	Not Available	1254	Open in IMG/M
3300007538\|Ga0099851_1099065	All Organisms → Viruses → Predicted Viral	1111	Open in IMG/M
3300007538\|Ga0099851_1113856	All Organisms → Viruses → Predicted Viral	1024	Open in IMG/M
3300007538\|Ga0099851_1132687	Not Available	935	Open in IMG/M
3300007538\|Ga0099851_1215303	Not Available	695	Open in IMG/M
3300007538\|Ga0099851_1217131	Not Available	692	Open in IMG/M
3300007538\|Ga0099851_1230414	Not Available	667	Open in IMG/M
3300007538\|Ga0099851_1243736	Not Available	644	Open in IMG/M
3300007538\|Ga0099851_1317445	Not Available	547	Open in IMG/M
3300007540\|Ga0099847_1134051	Not Available	742	Open in IMG/M
3300007540\|Ga0099847_1206897	Not Available	571	Open in IMG/M
3300007542\|Ga0099846_1090447	All Organisms → Viruses → Predicted Viral	1133	Open in IMG/M
3300007542\|Ga0099846_1217507	Not Available	670	Open in IMG/M
3300009435\|Ga0115546_1183682	Not Available	728	Open in IMG/M
3300010368\|Ga0129324_10166276	Not Available	911	Open in IMG/M
3300010368\|Ga0129324_10205248	Not Available	799	Open in IMG/M
3300010368\|Ga0129324_10272752	Not Available	670	Open in IMG/M
3300010368\|Ga0129324_10358626	Not Available	567	Open in IMG/M
3300010368\|Ga0129324_10366479	Not Available	559	Open in IMG/M
3300010368\|Ga0129324_10410493	Not Available	522	Open in IMG/M
3300013010\|Ga0129327_10432460	Not Available	703	Open in IMG/M
3300018682\|Ga0188851_1031933	Not Available	577	Open in IMG/M
3300022053\|Ga0212030_1019446	Not Available	908	Open in IMG/M
3300022053\|Ga0212030_1042195	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	643	Open in IMG/M
3300022053\|Ga0212030_1049737	Not Available	595	Open in IMG/M
3300022053\|Ga0212030_1051763	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300022053\|Ga0212030_1052124	Not Available	581	Open in IMG/M
3300022061\|Ga0212023_1003219	All Organisms → Viruses → Predicted Viral	1815	Open in IMG/M
3300022061\|Ga0212023_1005779	All Organisms → Viruses → Predicted Viral	1486	Open in IMG/M
3300022061\|Ga0212023_1010536	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300022061\|Ga0212023_1059635	Not Available	530	Open in IMG/M
3300022063\|Ga0212029_1027547	Not Available	787	Open in IMG/M
3300022072\|Ga0196889_1005292	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	2995	Open in IMG/M
3300022072\|Ga0196889_1018292	All Organisms → Viruses → Predicted Viral	1472	Open in IMG/M
3300022072\|Ga0196889_1030509	All Organisms → Viruses → Predicted Viral	1092	Open in IMG/M
3300022072\|Ga0196889_1066786	Not Available	681	Open in IMG/M
3300022200\|Ga0196901_1136720	Not Available	826	Open in IMG/M
3300022200\|Ga0196901_1154885	Not Available	760	Open in IMG/M
3300022200\|Ga0196901_1219374	Not Available	602	Open in IMG/M
3300025508\|Ga0208148_1008521	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3225	Open in IMG/M
3300025508\|Ga0208148_1009598	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	3004	Open in IMG/M
3300025508\|Ga0208148_1010310	All Organisms → Viruses → Predicted Viral	2879	Open in IMG/M
3300025508\|Ga0208148_1011180	All Organisms → Viruses → Predicted Viral	2737	Open in IMG/M
3300025508\|Ga0208148_1032350	All Organisms → Viruses → Predicted Viral	1397	Open in IMG/M
3300025508\|Ga0208148_1034725	Not Available	1333	Open in IMG/M
3300025508\|Ga0208148_1045034	Not Available	1116	Open in IMG/M
3300025508\|Ga0208148_1045904	Not Available	1101	Open in IMG/M
3300025508\|Ga0208148_1051739	Not Available	1012	Open in IMG/M
3300025508\|Ga0208148_1108516	Not Available	587	Open in IMG/M
3300025543\|Ga0208303_1008875	Not Available	3189	Open in IMG/M
3300025543\|Ga0208303_1019522	All Organisms → Viruses → Predicted Viral	1946	Open in IMG/M
3300025543\|Ga0208303_1021545	All Organisms → Viruses → Predicted Viral	1820	Open in IMG/M
3300025543\|Ga0208303_1025379	All Organisms → Viruses → Predicted Viral	1632	Open in IMG/M
3300025543\|Ga0208303_1025774	All Organisms → Viruses → Predicted Viral	1616	Open in IMG/M
3300025543\|Ga0208303_1036978	Not Available	1260	Open in IMG/M
3300025543\|Ga0208303_1043848	Not Available	1119	Open in IMG/M
3300025543\|Ga0208303_1056490	Not Available	934	Open in IMG/M
3300025543\|Ga0208303_1058791	Not Available	908	Open in IMG/M
3300025543\|Ga0208303_1063285	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300025543\|Ga0208303_1063287	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300025543\|Ga0208303_1080616	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	722	Open in IMG/M
3300025543\|Ga0208303_1098792	Not Available	620	Open in IMG/M
3300025543\|Ga0208303_1107573	Not Available	580	Open in IMG/M
3300025543\|Ga0208303_1117001	Not Available	542	Open in IMG/M
3300025590\|Ga0209195_1051770	Not Available	1038	Open in IMG/M
3300025645\|Ga0208643_1008662	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4050	Open in IMG/M
3300025645\|Ga0208643_1015434	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Carboxylicivirga	2788	Open in IMG/M
3300025645\|Ga0208643_1034008	All Organisms → Viruses → Predicted Viral	1664	Open in IMG/M
3300025645\|Ga0208643_1036275	All Organisms → Viruses → Predicted Viral	1593	Open in IMG/M
3300025645\|Ga0208643_1043838	All Organisms → Viruses → Predicted Viral	1405	Open in IMG/M
3300025645\|Ga0208643_1048259	All Organisms → Viruses → Predicted Viral	1317	Open in IMG/M
3300025645\|Ga0208643_1078429	Not Available	946	Open in IMG/M
3300025645\|Ga0208643_1089688	Not Available	861	Open in IMG/M
3300025645\|Ga0208643_1126094	Not Available	673	Open in IMG/M
3300025645\|Ga0208643_1178318	Not Available	517	Open in IMG/M
3300025647\|Ga0208160_1020348	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2108	Open in IMG/M
3300025647\|Ga0208160_1022215	Not Available	1994	Open in IMG/M
3300025647\|Ga0208160_1024016	Not Available	1899	Open in IMG/M
3300025647\|Ga0208160_1025921	Not Available	1812	Open in IMG/M
3300025647\|Ga0208160_1027249	Not Available	1756	Open in IMG/M
3300025647\|Ga0208160_1037088	Not Available	1447	Open in IMG/M
3300025647\|Ga0208160_1043505	All Organisms → Viruses → Predicted Viral	1305	Open in IMG/M
3300025647\|Ga0208160_1053290	All Organisms → Viruses → Predicted Viral	1143	Open in IMG/M
3300025647\|Ga0208160_1061414	All Organisms → Viruses → Predicted Viral	1042	Open in IMG/M
3300025647\|Ga0208160_1070465	Not Available	954	Open in IMG/M
3300025647\|Ga0208160_1104410	Not Available	731	Open in IMG/M
3300025647\|Ga0208160_1104944	Not Available	729	Open in IMG/M
3300025647\|Ga0208160_1110982	Not Available	701	Open in IMG/M
3300025647\|Ga0208160_1112994	Not Available	692	Open in IMG/M
3300025647\|Ga0208160_1113600	Not Available	689	Open in IMG/M
3300025647\|Ga0208160_1118489	Not Available	670	Open in IMG/M
3300025647\|Ga0208160_1118745	Not Available	669	Open in IMG/M
3300025647\|Ga0208160_1150148	Not Available	565	Open in IMG/M
3300025647\|Ga0208160_1170177	Not Available	514	Open in IMG/M
3300025647\|Ga0208160_1171016	Not Available	512	Open in IMG/M
3300025655\|Ga0208795_1031626	All Organisms → Viruses → Predicted Viral	1666	Open in IMG/M
3300025655\|Ga0208795_1129810	Not Available	648	Open in IMG/M
3300025655\|Ga0208795_1155523	Not Available	567	Open in IMG/M
3300027917\|Ga0209536_102922915	Not Available	553	Open in IMG/M
3300031578\|Ga0307376_10539221	Not Available	750	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.09%
Terrestrial	Environmental → Terrestrial	0.91%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	98.18%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Soil	Environmental → Terrestrial → Soil	0.91%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	94.55%
Pelagic	Environmental → Aquatic → Marine → Pelagic	1.82%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.91%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.91%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.91%
Clay	Environmental → Terrestrial → Soil → Clay	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	94.55%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.91%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	88.18%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	6.36%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.82%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.91%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.91%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	0.91%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300018682	Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1	Environmental	Open in IMG/M
3300022053	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022061	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022072	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025590	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420 (SPAdes)	Environmental	Open in IMG/M
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100951551	3300000115	Marine	MTHFKHAHGTLMIEMIDDTNTHTKLGDRGVKVYERLREL
Ga0075466_10476611	3300006029	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKLGDRGFKSYERLREL
Ga0075467_100945216	3300006803	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKLGDRGFKSYER
Ga0075467_100984775	3300006803	Aqueous	MTHFKHAHGTLMIEMIDDTNTHTNRGDRPLESYERLRQL
Ga0070748_10679285	3300006920	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGDRGFKSYER
Ga0070748_11151064	3300006920	Aqueous	MTHFKHVYGTLIVEMIEDTNTHTKLGDRGFKSYERLREL
Ga0070748_12113623	3300006920	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTKLGDRPLESYERLREL
Ga0070748_13225463	3300006920	Aqueous	MTHFKHAHGTLMIEMIEDTNTHMNRGDRPLESYEACREL
Ga0070748_13358763	3300006920	Aqueous	MTHFKHAHGTFGVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0099851_10709345	3300007538	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTKLGDRGFKVYERLREL
Ga0099851_10805105	3300007538	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKKVDRGVKVYER
Ga0099851_10990654	3300007538	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKKVGRGVKVYERLREL
Ga0099851_11138564	3300007538	Aqueous	MTHFKHADETLGVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0099851_11326875	3300007538	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTKCGDRGVKVYERLREL
Ga0099851_12153033	3300007538	Aqueous	MTHFKHVYGTLIVEMIEGANTHMKLGDRGFKSYER
Ga0099851_12171313	3300007538	Aqueous	MTHFKHAHGTLIVEMIQGANTHMKLGGRPLKVYERLREL
Ga0099851_12304141	3300007538	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKCGDRGVESYERLR
Ga0099851_12437363	3300007538	Aqueous	MTHFKHVHGTLGVEMIDDTNTHTKLGDRGFKSYERLRE
Ga0099851_13174451	3300007538	Aqueous	MTHFKHAHGTFGVEMIEDTNTHTNRGDRPLESYERL
Ga0099847_11340514	3300007540	Aqueous	MTHFKHAHGTFGVEMIEGANTHMNRGDRGFKVYERLREL
Ga0099847_12068973	3300007540	Aqueous	MTHFKHAHGTFGVEMIEDTNTHTNRGDRPLESYEACREL
Ga0099846_10904471	3300007542	Aqueous	MKHFKHAHGTLIVEMIEGANTHTKLGDRGFKSYER
Ga0099846_12175073	3300007542	Aqueous	MTHFKHAHGTLGFEMIEDTNTHTKLGDRGFKSYERLREL
Ga0115546_11836823	3300009435	Pelagic Marine	MTHFKHVYGTLGVEMIEGANTHMKLGDRGFKVYERLREL
Ga0129324_101662764	3300010368	Freshwater To Marine Saline Gradient	MAHFKHAHGTLIVEMIEGANTHTKLGDRGFKSYER
Ga0129324_102052481	3300010368	Freshwater To Marine Saline Gradient	MTHFKHVYGTLIVEMIEDTNTHTKLGDRPLKVYER
Ga0129324_102727521	3300010368	Freshwater To Marine Saline Gradient	MTHFKHVYGTLIVEMIEGANTHMKLGGRPIKSYARLREL
Ga0129324_103586263	3300010368	Freshwater To Marine Saline Gradient	MTHFKHAHGTLGVEMIEDTNTHTKLGDRGFKSYERLREL
Ga0129324_103664793	3300010368	Freshwater To Marine Saline Gradient	MTHFKHAHGTLIVEMIEDTNTHMKCGDRGFKSYERLREL
Ga0129324_104104931	3300010368	Freshwater To Marine Saline Gradient	MTHFKHVYGTLMIEMIECTNTHIKLGDRGFKVYERLR
Ga0129327_104324603	3300013010	Freshwater To Marine Saline Gradient	MTHFKHAHGTFGVEMIEGANTHMKLGGRPLKVYEAYM
Ga0188851_10319333	3300018682	Freshwater Lake	MTHFKHTHGTLIVEMIEGANTHMKLGGRPLKSYEGLRE
Ga0212030_10194463	3300022053	Aqueous	MTHFKHAHGTFGVEMIEGANTHMKLGGRPLKVYEAYMELRMDF
Ga0212030_10421951	3300022053	Aqueous	MTHFKHAHGTLMIEMIEDTNTHMNRGDRPLESYERLRQLRMDF
Ga0212030_10497371	3300022053	Aqueous	MTHFKHAHGTLGVEMIEGANTHTNRGGRPLESYERLRQLRID
Ga0212030_10517633	3300022053	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKLWGRGFKVYERLRELRMVS
Ga0212030_10521243	3300022053	Aqueous	MTHFKHAHGTLMIEMIDDTNTHTKLGDRGVKVYERLRELRMV
Ga0212023_10032196	3300022061	Aqueous	MTHFKHAHGTFGVEMIEGANTHMNRGDRPLESYEACRELRMD
Ga0212023_10057796	3300022061	Aqueous	MTHFKHAHGTLMIEMIECTNTHTMKVGRGVKVYERLRELRMDS
Ga0212023_10105364	3300022061	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKLGDRGFKSYERLRELRMDI
Ga0212023_10596351	3300022061	Aqueous	MTHFKHAHGTLMIDMIEDTNTHTKLGDRGFKSYERPRELRMDIS
Ga0212029_10275471	3300022063	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKKVDRGVKVYERGRELRMDSSFL
Ga0196889_10052921	3300022072	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKLGDRGFKSYERL
Ga0196889_10182921	3300022072	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKCGDRGFKSYERLR
Ga0196889_10305095	3300022072	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTMKVGRGVKVYERLR
Ga0196889_10667863	3300022072	Aqueous	MTHFKHAHGTLIVEMIEGANTHMKLGDRPLESYEAC
Ga0196901_11367201	3300022200	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGGRPLKVYEGLR
Ga0196901_11548851	3300022200	Aqueous	MTHFKHAHGTLGVEMIEGANTHMKLGDRGFKVYERLR
Ga0196901_12193743	3300022200	Aqueous	MTHFKHAHGTLIVEMIEDTNTHMKLGGRPLKVYER
Ga0208148_10085211	3300025508	Aqueous	MTHFKHAHGTLIVEMIEDTNTHMKLGGRPLKVYERLMEL
Ga0208148_10095988	3300025508	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKLGDRGFKSYERLREL
Ga0208148_10103101	3300025508	Aqueous	MTHFKHAHGTLIVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0208148_10111808	3300025508	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKCGDRGFKSYERLREL
Ga0208148_10323501	3300025508	Aqueous	MTHFKHAHGTLIVEMIEDTNTHIKLGDRGFKSYERAKGL
Ga0208148_10347254	3300025508	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKCGDRGFKVYERLREL
Ga0208148_10450344	3300025508	Aqueous	MTHFKHAHGTLGVEMIECTNTHTNRGDRPLKVYERLREL
Ga0208148_10459041	3300025508	Aqueous	MTHFKHAHGTLMIEMIEDTNTHTMKVGRGVKSYERLREL
Ga0208148_10517394	3300025508	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGDRGFKSYERLREL
Ga0208148_11085161	3300025508	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGDRGFKSYERGREL
Ga0208303_10088751	3300025543	Aqueous	MTHFKHAHGTFGVEMIEGANTHMKLGGRPLKVYEAYMEL
Ga0208303_10195226	3300025543	Aqueous	MTHFKHVYGTLIVEMIEDTNTHTKLGDRPLKVYERAKGL
Ga0208303_10215451	3300025543	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGGRPLKVYERLREL
Ga0208303_10253795	3300025543	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKLWGRGFKVYERLREL
Ga0208303_10257741	3300025543	Aqueous	MTHFKHAHGTFGVEMIEGANTHMKLVGRGFKVYERLREL
Ga0208303_10369781	3300025543	Aqueous	MTHFKHAHGTLIVEMIEDTNTHTKLGGRGFKVYEGLREL
Ga0208303_10438481	3300025543	Aqueous	MTHFKHAHGTLGVEMIECTNTHTMKVGRGVKVYERLREL
Ga0208303_10564901	3300025543	Aqueous	MTHFKHAHGTLGVEMIEDTNTHMKLGDRPLESYEACREL
Ga0208303_10587911	3300025543	Aqueous	MTHFKHAHGTFGVEMIEDTNTHMKLGDRPLESYERLREL
Ga0208303_10632851	3300025543	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTKCGDRGVKVYERPREL
Ga0208303_10632874	3300025543	Aqueous	MTHFKHAHGTLGVEMIEDTNTHMKLGDRGFKSYERLREL
Ga0208303_10806161	3300025543	Aqueous	MTHFKHAHGTFGVEMIEDTNTHTNRGDRGFKVYERLREL
Ga0208303_10987923	3300025543	Aqueous	MTHFKHAHGTLGVEMIEGANTHMKLWDRGFKVYERLREL
Ga0208303_11075733	3300025543	Aqueous	MTHFKHVYGTLIVEMIEGANTHTKKVDRGVKVYERGREL
Ga0208303_11170011	3300025543	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0209195_10517701	3300025590	Pelagic Marine	MTHFKHVYGTLIVEMIEGANTHTKLWDRGFKVYERLREL
Ga0208643_10086621	3300025645	Aqueous	MTHFKHAHGTLIVEMIEDTNTHMKLGDRGFKVYERLREL
Ga0208643_10154341	3300025645	Aqueous	MKHFKHVYGTLGVEMIEGANTHTKLGDRGFKSYDRLREL
Ga0208643_10340081	3300025645	Aqueous	MTHFKHAHGTFGVEMIEGANTHMNRGDRPLESYEACREL
Ga0208643_10362754	3300025645	Aqueous	MTHFKHAHGTLIVEMIEDTNTHMKLGGRPLKVYERLREL
Ga0208643_10438385	3300025645	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGDRGVKVYERLREL
Ga0208643_10482591	3300025645	Aqueous	MTHFKHAHGTLIVEMIEGANTHMKLGDRPLESYEACREL
Ga0208643_10784291	3300025645	Aqueous	MTHFKHVYGTLVVEMIEGANTHTKLGGRPLKVYERLREL
Ga0208643_10896884	3300025645	Aqueous	MTHFKHAHGTLGVEMIEGANTHTKLGDRPLKVYERLREL
Ga0208643_11260943	3300025645	Aqueous	MTHFKHAHGTLGVEMIEDTNTHTMKVGRGVKVYERLREL
Ga0208643_11783183	3300025645	Aqueous	MTHFKHVYGTLGVEMIQGVNTHTMKVGRGVKVYERLREL
Ga0208160_10203486	3300025647	Aqueous	MTHFKHAHGTLIVEMIDDTNTHTKLGGRPLKVYERLREL
Ga0208160_10222151	3300025647	Aqueous	MTHFKRVYGTLMIEMIEGANTHTKLGGRGFKVYERLREL
Ga0208160_10240161	3300025647	Aqueous	MTHFKHAHGTLVVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0208160_10259211	3300025647	Aqueous	MTHFKHVYGTLMIEMIECTNTHIKLGDRGFKVYERLREL
Ga0208160_10272497	3300025647	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGGRPLKVYEGLREL
Ga0208160_10370881	3300025647	Aqueous	MTHFKHAYGTLIVEMIEGANTHTKLGDRGFKSYERLREL
Ga0208160_10435054	3300025647	Aqueous	MKHFKHAHGTLIVEMIEGANTHTKLGDRGFKSYERAKGL
Ga0208160_10532901	3300025647	Aqueous	MTHFKHVYGTLGVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0208160_10614144	3300025647	Aqueous	MTHFKHVHGTLGVEMIDDTNTHTKLGDRGFKSYERLREL
Ga0208160_10704655	3300025647	Aqueous	MTHFKHAHGTFGVEMIEDTNTHTNRGDRPLESYERLREL
Ga0208160_11044104	3300025647	Aqueous	MTHFKHVYGTLIVEMIEGANTHMKLGDRGFKSYERLREL
Ga0208160_11049443	3300025647	Aqueous	MTHFKHANGTLIVEMIEGANTHMKLGDRGFKSYERLREL
Ga0208160_11109821	3300025647	Aqueous	MTHFKHADETLGVEMIECTNTHTKLGGRPLKVYERLREL
Ga0208160_11129941	3300025647	Aqueous	MTHFKHVYGTLGVEMIEDTNTHIKLGDRPLKVYERLREL
Ga0208160_11136003	3300025647	Aqueous	MTHFKHVHGTLIVEMIEDTNTHTKLGDRGFKSYEGLREL
Ga0208160_11184891	3300025647	Aqueous	MTHFKHAHGTLGFEMIEDTNTHTKLGDRGFKSYERLSEL
Ga0208160_11187451	3300025647	Aqueous	MTHFKHAHGTLIVEMIEGANTHMKLGDRGFKVYERLREL
Ga0208160_11501481	3300025647	Aqueous	MTHFKHVHGTLGVEIIEGANTHTKLGGRGVKVYERLREL
Ga0208160_11701773	3300025647	Aqueous	MTHFKHVYGTLIVEMIEDTNTHTKLGGRPLKVYERLREL
Ga0208160_11710163	3300025647	Aqueous	MTHFKHAHGTLIVEMIEGANTHMKLGGRPLKVYEGLREL
Ga0208795_10316261	3300025655	Aqueous	MTHFKHAHWTLIVEMIEDTNTHMNRGGRGVKVYERLREL
Ga0208795_11298101	3300025655	Aqueous	MTHFKHAHGTLIVEMIEGANTHTKLGGRPLKSYEMLKEL
Ga0208795_11555231	3300025655	Aqueous	MTHFKHVYGTLMIKMIEDTNTHMKLGGRPLESYERLREL
Ga0209536_1029229151	3300027917	Marine Sediment	MTHFKHAHGTLGVEMIECTNTHTMKVGRGFKVYERLREL
Ga0307376_105392213	3300031578	Soil	MTHFKHAHGTLIVEMIEGANTHMKLGDRGFKSYERLSEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086824

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences