Metagenome Family F086732

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086732
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	60 residues
Representative Sequence	MKSYRLGRLAGGMLVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAAR
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.11 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.454 % of family members)
Environment Ontology (ENVO)	Unclassified (22.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.45% β-sheet: 0.00% Coil/Unstructured: 54.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13083	KH_4	6.36
PF00149	Metallophos	3.64
PF13432	TPR_16	2.73
PF04014	MazE_antitoxin	2.73
PF04237	YjbR	1.82
PF02685	Glucokinase	1.82
PF14559	TPR_19	1.82
PF00392	GntR	1.82
PF00578	AhpC-TSA	1.82
PF16757	Fucosidase_C	1.82
PF00072	Response_reg	1.82
PF13185	GAF_2	0.91
PF03466	LysR_substrate	0.91
PF04397	LytTR	0.91
PF02667	SCFA_trans	0.91
PF13229	Beta_helix	0.91
PF06580	His_kinase	0.91
PF01850	PIN	0.91
PF02630	SCO1-SenC	0.91
PF02661	Fic	0.91
PF06537	DHOR	0.91
PF12779	WXXGXW	0.91
PF07238	PilZ	0.91
PF13620	CarboxypepD_reg	0.91
PF04820	Trp_halogenase	0.91
PF14824	Sirohm_synth_M	0.91
PF14509	GH97_C	0.91
PF00491	Arginase	0.91
PF13847	Methyltransf_31	0.91
PF04851	ResIII	0.91
PF00501	AMP-binding	0.91
PF04255	DUF433	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0837	Glucokinase	Carbohydrate transport and metabolism [G]	1.82
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	1.82
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.91
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG2031	Short chain fatty acids transporter	Lipid transport and metabolism [I]	0.91
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.91
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.91
COG2978	p-Aminobenzoyl-glutamate transporter AbgT	Coenzyme transport and metabolism [H]	0.91
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.91
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	53.64 %
Unclassified	root	N/A	21.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.82 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	44.55 %
Unclassified	root	N/A	21.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	1.82 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.73 %
Unclassified	root	N/A	21.82 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	0.91 %
Fimbriimonadia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.73 %
Unclassified	root	N/A	21.82 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Fimbriimonadales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales	0.91 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.73 %
Unclassified	root	N/A	21.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Fimbriimonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae	0.91 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.91 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.73 %
Unclassified	root	N/A	21.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Fimbriimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas	0.91 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.91 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.73 %
Unclassified	root	N/A	21.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.82 %
Fimbriimonas ginsengisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	0.91 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.91 %
Armatimonadetes bacterium 13_1_40CM_3_65_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %
Acidobacteria bacterium 13_1_40CM_4_57_6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_106908105	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	767	Open in IMG/M
3300002245\|JGIcombinedJ26739_101878580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300004152\|Ga0062386_100596320	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300004152\|Ga0062386_101096869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300004479\|Ga0062595_101299715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300005167\|Ga0066672_10063797	Not Available	2156	Open in IMG/M
3300005167\|Ga0066672_10561690	Not Available	739	Open in IMG/M
3300005177\|Ga0066690_10264343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1156	Open in IMG/M
3300005534\|Ga0070735_10763901	Not Available	570	Open in IMG/M
3300005568\|Ga0066703_10518004	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300005574\|Ga0066694_10552152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300005576\|Ga0066708_10235707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1159	Open in IMG/M
3300005921\|Ga0070766_11007483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium 13_1_40CM_3_65_7	573	Open in IMG/M
3300006034\|Ga0066656_10031923	All Organisms → cellular organisms → Bacteria → Acidobacteria	2933	Open in IMG/M
3300006059\|Ga0075017_100481238	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300006059\|Ga0075017_100676993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300006854\|Ga0075425_102212814	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300006854\|Ga0075425_102368220	Not Available	589	Open in IMG/M
3300007258\|Ga0099793_10665559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300009038\|Ga0099829_10559264	Not Available	950	Open in IMG/M
3300009137\|Ga0066709_104522686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300009518\|Ga0116128_1210989	Not Available	544	Open in IMG/M
3300009616\|Ga0116111_1103665	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300010359\|Ga0126376_10281712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1434	Open in IMG/M
3300010359\|Ga0126376_10864791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300010379\|Ga0136449_100589449	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300011269\|Ga0137392_11500601	Not Available	533	Open in IMG/M
3300011269\|Ga0137392_11526224	Not Available	527	Open in IMG/M
3300012096\|Ga0137389_11499505	Not Available	570	Open in IMG/M
3300012189\|Ga0137388_10643150	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300012202\|Ga0137363_10773417	All Organisms → cellular organisms → Bacteria → Acidobacteria	814	Open in IMG/M
3300012205\|Ga0137362_11426230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300012207\|Ga0137381_10519407	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300012285\|Ga0137370_10575012	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300012361\|Ga0137360_10238120	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300012361\|Ga0137360_11864706	Not Available	507	Open in IMG/M
3300012924\|Ga0137413_10648254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_57_6	796	Open in IMG/M
3300014158\|Ga0181521_10269707	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300014162\|Ga0181538_10144050	Not Available	1371	Open in IMG/M
3300014968\|Ga0157379_12635936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300016270\|Ga0182036_10512952	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300016319\|Ga0182033_10108611	All Organisms → cellular organisms → Bacteria	2058	Open in IMG/M
3300017925\|Ga0187856_1161965	Not Available	835	Open in IMG/M
3300017938\|Ga0187854_10273437	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300017940\|Ga0187853_10004953	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9461	Open in IMG/M
3300017940\|Ga0187853_10128816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1226	Open in IMG/M
3300017940\|Ga0187853_10492235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300017973\|Ga0187780_11225438	Not Available	550	Open in IMG/M
3300018001\|Ga0187815_10297016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300018001\|Ga0187815_10456962	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300018002\|Ga0187868_1186150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300018006\|Ga0187804_10208845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300018009\|Ga0187884_10292908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	659	Open in IMG/M
3300018015\|Ga0187866_1156574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300018019\|Ga0187874_10046051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2048	Open in IMG/M
3300018064\|Ga0187773_10466373	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	746	Open in IMG/M
3300018088\|Ga0187771_10208639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1622	Open in IMG/M
3300018088\|Ga0187771_11533731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300018088\|Ga0187771_11606056	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300018468\|Ga0066662_10832151	Not Available	899	Open in IMG/M
3300018468\|Ga0066662_12746800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018482\|Ga0066669_10335288	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300019082\|Ga0187852_1326024	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	608	Open in IMG/M
3300020034\|Ga0193753_10293421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300020140\|Ga0179590_1147552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300020579\|Ga0210407_10178876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1643	Open in IMG/M
3300020583\|Ga0210401_10987025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300021046\|Ga0215015_10553540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300021046\|Ga0215015_11097511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300021088\|Ga0210404_10578290	Not Available	637	Open in IMG/M
3300021168\|Ga0210406_10121057	All Organisms → cellular organisms → Bacteria	2212	Open in IMG/M
3300021170\|Ga0210400_10479604	Not Available	1026	Open in IMG/M
3300021171\|Ga0210405_10240565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1432	Open in IMG/M
3300021178\|Ga0210408_10625393	Not Available	851	Open in IMG/M
3300021403\|Ga0210397_10533825	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300021420\|Ga0210394_10643599	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300021433\|Ga0210391_10163190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1754	Open in IMG/M
3300021433\|Ga0210391_11059365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300021475\|Ga0210392_11264912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300021479\|Ga0210410_11118455	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300021559\|Ga0210409_11613629	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300023259\|Ga0224551_1011683	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300025419\|Ga0208036_1019757	Not Available	1391	Open in IMG/M
3300026304\|Ga0209240_1148256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300026317\|Ga0209154_1236605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300026532\|Ga0209160_1049041	All Organisms → cellular organisms → Bacteria → Acidobacteria	2459	Open in IMG/M
3300026551\|Ga0209648_10747965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300026552\|Ga0209577_10567704	Not Available	709	Open in IMG/M
3300027660\|Ga0209736_1061190	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300027857\|Ga0209166_10131356	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1376	Open in IMG/M
3300027911\|Ga0209698_10189391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1669	Open in IMG/M
3300027911\|Ga0209698_10289351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1299	Open in IMG/M
3300031720\|Ga0307469_10118747	All Organisms → cellular organisms → Bacteria	1907	Open in IMG/M
3300031754\|Ga0307475_11432470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300031771\|Ga0318546_10642068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300031890\|Ga0306925_10256630	All Organisms → cellular organisms → Bacteria → Acidobacteria	1884	Open in IMG/M
3300031942\|Ga0310916_11032042	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300032094\|Ga0318540_10191828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	984	Open in IMG/M
3300032160\|Ga0311301_10962199	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300032174\|Ga0307470_11602388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	545	Open in IMG/M
3300032180\|Ga0307471_102461988	Not Available	658	Open in IMG/M
3300032892\|Ga0335081_11904957	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300033402\|Ga0326728_10466755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1042	Open in IMG/M
3300033402\|Ga0326728_10920747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300033405\|Ga0326727_10277630	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300033475\|Ga0310811_11472970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.27%
Host-Associated	Host-Associated	2.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.45%
Aquatic	Environmental → Aquatic	21.82%
Plants	Host-Associated → Plants	2.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.82%
Freshwater	Environmental → Aquatic → Freshwater	18.18%
Sediment	Environmental → Aquatic → Sediment	3.64%
Peat	Environmental → Terrestrial → Peat	3.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.64%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	12.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.00%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1069081051	3300000955	Soil	MKTNGLGRLAGGTFVVLTSAISLSMAAANSYHLLKKYSFGPAEGSTREYFDYITVDSVARRVYLSHGT
JGIcombinedJ26739_1018785802	3300002245	Forest Soil	MKSYSLGRLPGSVLLILLSTFPLLIAATGGYHLLKKYPFGAAEGSTREYFDYITVDSAAR
Ga0062386_1005963201	3300004152	Bog Forest Soil	MKSLSGLARLATFVFFTLVTACALAVAAEGGYHLLKKYPFGAAAGSTREYFDYITVDSSA
Ga0062386_1010968692	3300004152	Bog Forest Soil	MKLSSGLGRLVSGVSFVLLGAFALAIAATGGYHLLQKYTFGAAEGSTREYFDYITVDS
Ga0062595_1012997151	3300004479	Soil	MNSYRHNLGRFSSGLSLILLGAVSLSMAATSGYHLLKKYSFGAAEGSTREYFDYITVDSAARRVYLSHGTEVK
Ga0066672_100637974	3300005167	Soil	MKSYRLGRLAGGMLVVLLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAARRV
Ga0066672_105616902	3300005167	Soil	MKSYGFGRLASGMLLLTLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAARRV
Ga0066690_102643433	3300005177	Soil	MKSYRLGRLAGGMLVVLLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSA
Ga0070735_107639012	3300005534	Surface Soil	MGSHRVGRIAVGALLIPVASFSVLMAATGKYQLLNKYSFGAAEGAPREYFDFITVDSAA
Ga0066703_105180042	3300005568	Soil	MKSYRLGRLAGGMLVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSA
Ga0066694_105521521	3300005574	Soil	MKSYRLGRLAGGMLVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAAR
Ga0066708_102357071	3300005576	Soil	MKSYRLGRLAGGILVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSA
Ga0070766_110074831	3300005921	Soil	MKSSRLCRQAMCFALLLLAAFSLARAATGGYHLLKKYTFGAAEGSSREYFDYLT
Ga0066656_100319231	3300006034	Soil	MKSYRLGRLAGGMLVILLGTFSLSMAATNVYHLLKKYSFGAAEGSTREYFDYITVDSAA
Ga0075017_1004812381	3300006059	Watersheds	MLSITREVRINSYAIGRIASAALLVLLSSFSLLIAATNRYHLLKKYSFGAAEGSSREYFDYITVDS
Ga0075017_1006769931	3300006059	Watersheds	MKSSGLRGIASGALFILLGSFSLLTAATSGYHLLKKYNFGAAEGSTREYFDYITVDSAARRVYIS
Ga0075425_1022128142	3300006854	Populus Rhizosphere	MKYFSFGRLASGGLLILLGTFPLLKAATNGYHLLKKYTFGAAEGSTREYFDYITVDSAARRVYLSHGTEIKIL
Ga0075425_1023682201	3300006854	Populus Rhizosphere	MKSSSRLGRLATCVSFVLFNAFALAIAATGGYHLLKKYTFGVAEGSSREYFDYIT
Ga0099793_106655592	3300007258	Vadose Zone Soil	MKSYSVGRIASGVLVIVLSAFWLMAAAPGYHLLKKYSFGAAEGATREYFDYITVDSAARR
Ga0099829_105592642	3300009038	Vadose Zone Soil	MRSYSVGRIASGVLVIVLSAFSLMMAAAPGYHLLKKYSFGAAEGATREYFDYI
Ga0066709_1045226862	3300009137	Grasslands Soil	MKLHRLVRLAATALVILLGTVSLLVAAPGYHLLKKYPFAAAPGATREYFDYVSVDSAARRVYISHGTEIIV
Ga0116128_12109892	3300009518	Peatland	MKSASGLARLATVVSLILLGAFALATAATGGYHLLKKYPFGAAEGST
Ga0116111_11036651	3300009616	Peatland	MKSASGLARLATVVSLILLGAFALATAATGGYHLLNKYPFGAAEGSTREYFDYITVDSSARR
Ga0074045_107835051	3300010341	Bog Forest Soil	MESSSGLGRRALGALFLLFSSFALAIAAAGGYHLLNKYTFGAAEGSTREYFDYVTVDSSARRVYLSHGTEVK
Ga0126376_102817121	3300010359	Tropical Forest Soil	MKANIWGRLAASALVILGAVSVLAAASNYRLLKKYSFGPAQGSTREYFDYITVDSAARRVYLSHGTEIKII
Ga0126376_108647912	3300010359	Tropical Forest Soil	MKTHALGRFASGVFVILLGALSLLTAATNGYHLLKKYSFGAAEGSTREYFDYITVDS
Ga0136449_1005894493	3300010379	Peatlands Soil	MKSSSGLAGLATVASFILGAFALATAATGGYHLLTKYAFGAAEGSTREYFDYITVDSSAR
Ga0137392_115006011	3300011269	Vadose Zone Soil	MRSYSLGRIASGVLVIVLGTFSLMAAAPGYHLLKKYSFGAAEGSTREYFDYI
Ga0137392_115262242	3300011269	Vadose Zone Soil	MKSYSVGRIASGVVVIVLSAFSLMMAAAPGYHLLKKYSFGAAEGATREYFDYIT
Ga0137389_114995052	3300012096	Vadose Zone Soil	MKSYSVGRIASGVLVIVLSAFSLMMAAAPGYHLLKKYSFGAAE
Ga0137388_101889463	3300012189	Vadose Zone Soil	MKSYSVGRAASCVLVIALGAFWLMAAAPGYHLLKK
Ga0137388_106431502	3300012189	Vadose Zone Soil	MKSYGFGRLVGSVFVMLLGACSLVLAAAPGYHLLKKYSFGAAEGATRE
Ga0137363_107734173	3300012202	Vadose Zone Soil	MKSYSVGRLASGVLLVVLGAFSLLMAAAPGYHLLKKYSFGAAEGATREYFDYITVDSAARRVYLSHGTEIKVI
Ga0137362_114262302	3300012205	Vadose Zone Soil	MKSYSVGRLASGVLLIVLGAFSLLMAAAPGYHMVKKYSFGAAEGATREYFDYITVDSAARRVYLSHG
Ga0137381_105194071	3300012207	Vadose Zone Soil	MKSYRWGRLAAGVLVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAAR
Ga0137370_105750122	3300012285	Vadose Zone Soil	MKSYRLGRLAGGMLVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYF
Ga0137360_102381203	3300012361	Vadose Zone Soil	MKSYSVGRLASGVLLIVLGAFSLLMAAAPGYHMVKKYSFGAAEGATREYFDYITVDSA
Ga0137360_118647061	3300012361	Vadose Zone Soil	MKSYSVGRIASGVLVIVLSASSLMTAAAPGYHLLKKYSFGAAEGATREYFD
Ga0137413_106482541	3300012924	Vadose Zone Soil	MKSLNFGRIASVAVLILVGTSLLAATANEYHLLKKYSFGAAEGSTREYFDYITVDSAARRVYLSHG
Ga0181521_102697071	3300014158	Bog	MKSPSNRRRLAISTFCALASSFALAIAATGSYHLLNKYPFGAAEGSTREYFDYI
Ga0181538_101440501	3300014162	Bog	MNLSSGFKRLAPGVSFVLLSAFALALAATGGYHLLKKYPFGAAEGSTREYFDYIT
Ga0157379_126359361	3300014968	Switchgrass Rhizosphere	MFSVRGEGSHEIFSFGRLASGGLLILLGTFPLLTAATNGYHLLKKYTFGAAEGSTREYFDYITVDSAARRV
Ga0182036_105129522	3300016270	Soil	MKSYGLARIASVLLLILLGSFSFLVAAPIEYHLLKKYTFGAAAGSPREYFDYITVDSAARRVYLTHGTEVIIMDA
Ga0182033_101086111	3300016319	Soil	MNSRYIGRLAIGLSLTLLAAFPLLIAADSGYRLIKKYSFGAAEGSTREYFDYITVDSAPRRVYLSHGTEIKV
Ga0187856_11619652	3300017925	Peatland	MKSLSGLARLAAVGFYILLGAFALATTATGGYHLLNKYPFGAAEGSTREYF
Ga0187854_102734371	3300017938	Peatland	MKSASGLARLATVVSLILLGAFALATAATGGYHLLNKYPFGAAEGSTREYFDYITVDSSARRVYVS
Ga0187853_100049537	3300017940	Peatland	MNLSSGLRRLAPSVSFVLLSAFALALAATGSYHLLSKYTFGPAEGSTREYFDYITVDPSA
Ga0187853_101288161	3300017940	Peatland	MKSSSGLARLATVVSLILLGAFALATAATGGYHLLKKYPFGAAEGSTREYFDYITVDSSARRVY
Ga0187853_104922351	3300017940	Peatland	MKSLSGLARLAAVGFYILLGAFALATTATGGYHLLNKYPFGAAEGSTREYFDYITV
Ga0187780_112254381	3300017973	Tropical Peatland	MKLSSGQGLLATGVILILLGASALALAAAANYHQLRRYPFGAAEGSTREYFDYI
Ga0187815_102970162	3300018001	Freshwater Sediment	MLSIAREVRMNSYSLRRIASGALLIVLGCYSLLMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAARRVYLSHG
Ga0187815_104569622	3300018001	Freshwater Sediment	MYSRFGFARLAAVMFCILLGAFALASPATGGYHLLKKFSFGPAEGSTREYFDYITVDSA
Ga0187868_11861501	3300018002	Peatland	MKSASGLARLATVVSLILLGAFALATAATGGYHLLNKYPFGAAEGSTREYFDYITVDSSARRVYVSH
Ga0187804_102088452	3300018006	Freshwater Sediment	MLSIAREVRMNSYSLRRIASGALLIVLGCFSLLMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAARRVYLS
Ga0187884_102929081	3300018009	Peatland	MKSSSGLARLATVVSLILLGAFALATAATGGYHLLKKYPFGAAEGSTREYFDYIT
Ga0187866_11565741	3300018015	Peatland	MKSASGLARLATVLSFILLGAFALATAATDGYHLLKKYPFGAAEGSTREYFDYITVD
Ga0187874_100460511	3300018019	Peatland	MNLSSGLKRLAPSVSFVLLGAFALALAATGSYHLLSKYTFGPAEGSTREYFDYITVDPSA
Ga0187773_104663732	3300018064	Tropical Peatland	MKLYAPGRFVLGVLVSLLVIFSLAMGATNGYHLLKKYTFGAAEGSTREYFDYLTVDSAERRVYLSH
Ga0187771_102086392	3300018088	Tropical Peatland	MILGASVLVVVMVGITVARAAEGYHLLKKYSFGAAEGATREYFDYITVDSAARRVYLSH
Ga0187771_115337312	3300018088	Tropical Peatland	MKSSSGLARLGTVVICSFLGAFALATAATGGYHLIKKYPFGAAEGSTREYFDYITVDSAARRVYLS
Ga0187771_116060561	3300018088	Tropical Peatland	MNLRSGFARLAAVMFYILLGSFALASAATGGYHLLKKISFGPAEGGTREYF
Ga0187770_100198685	3300018090	Tropical Peatland	MKSSVGLVRLAKAASRLLFLSALALPVAAADGYHLLNKYPFGAAEGATREYFDYVFVDSAARR
Ga0066662_108321512	3300018468	Grasslands Soil	MKSYGFGRLASSVFAILLGACSLLMAAAPGYHLLKKYSFGAAEGSTREYFD
Ga0066662_127468001	3300018468	Grasslands Soil	MKSYRLGRLAGGMLVVLLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAARRVY
Ga0066669_103352883	3300018482	Grasslands Soil	MKLHRFAVLAATALVILLGTVSLLVAAAPGYHLLKKYPFAAAPGATREYFDYVSVDSAARRVYISHGTEIIVL
Ga0187852_13260241	3300019082	Peatland	MKSLSGLARLATFVFFTLVTACALAVAAEGGYHLLKKYPFGAAAGSTREY
Ga0193753_102934211	3300020034	Soil	MKSLSFGRIAGLAVLILVGTSLLVAAANEYHLLKKYSFGAAEGSTREYFD
Ga0179590_11475521	3300020140	Vadose Zone Soil	MKFLNFGRMERFALMARVAVLILAGCSLLLAAGNEYHLLKKHTLGAAEGSTREYFDYITVDSAARRV
Ga0210407_101788762	3300020579	Soil	MKSHSVGRIASGVVVILLGTFSLLMAAAPGYHLVKKYSFGAAEGSTREYFDYITVDSAAR
Ga0210401_109870252	3300020583	Soil	MKSHSVGRIASGVVVILLGAFTLLMAAAPGYHLVKKYSFGAAEGSTREYFDYVTVDSAA
Ga0215015_105535401	3300021046	Soil	MKSYRVGRIASGVLVIVLGSFSLLMAAVPGYHLIKKYSFGAAEGSTREYFDYITVDSAARRVYLS
Ga0215015_110975111	3300021046	Soil	MKSYSVGRAASCVLVIALGAFSLMAAAPGYHLIKKYSFGAAEGSTREYFDYITVDSAARRVYLSPVSYTHLTLPTICSV
Ga0210404_105782902	3300021088	Soil	MKSHSVGRIASGVVVILLGAFTLLMAAAPGYHLVKKYSFGAAE
Ga0210406_101210573	3300021168	Soil	MSGKGFGRLASAGLLMVLGAASVVMAATNGYHLLKKYSLGAAEGSTREYFDYISVDSAAR
Ga0210400_104796041	3300021170	Soil	MKSHSVGRVASGVLLIVLGAFSVLMAAAPGYHLLKKYSFGAAEGAAREY
Ga0210405_102405651	3300021171	Soil	MKSHSVGSIASGVVLILLGAFSLLMAAAPGYHLVKKYSFGAAEGSTREY
Ga0210408_106253931	3300021178	Soil	MKSHSVGRVASGVLLIVLGAFSVLMAAAPGYHLLKKYSFGAAEGAAREYFDYITVDS
Ga0210397_105338251	3300021403	Soil	MGSHRTLRIAVGALFTLVAGFSILMAATSKYQLLNKYSFGAAEGATREYFDYITVDSAARRVYISHGTQ
Ga0210394_106435992	3300021420	Soil	MKLASGSGRLVSGAVLIVMGVFSIAAAATGGYHLLKKYSFGAAEGGTREYFDY
Ga0210391_101631901	3300021433	Soil	MKTSVFVRLATAALAIPLAVCSFLMAATDTYHLLKKYSFGAAEGSTREYFDYITVDSAARRVYLSHGTEIKILDAD
Ga0210391_110593651	3300021433	Soil	MKTNVFVKHAAGALAILLAACSFVMAAADSYHLLKKYSFGAAEGSTREYFDYITV
Ga0210392_112649121	3300021475	Soil	MKSYSLGRLASGALVILLGTCSLLMAATNSYHLLKKYSFGAAEGSTREYFDYITVDSGARRVYLS
Ga0210410_111184552	3300021479	Soil	MNGKGFGRFASGGLLIVLGAASVVMAATNGYHLLKKYSFGAAEGSTREYFDYVTVDSAARRVYLSH
Ga0210409_116136292	3300021559	Soil	MKSNGFGRVASGLVVIVLGAASVLTAAANGYHLLKKYSFGAAEGSTREYFDYVSVDSV
Ga0224551_10116832	3300023259	Soil	MKSSSFGRFASGLLLILLGAFPFLMAATTGYHLLKKYSFGQAEGSTREYFDYITT
Ga0208036_10197572	3300025419	Peatland	MKSASGLARLATVLSFILLGAFALATAATDGYHLLKKYPFGAAEGSTREYFDYI
Ga0209240_11482562	3300026304	Grasslands Soil	MKFYSVGRIASGVLVIVLSAFSLMMAAAPGYHLLKKYSFGAAEGATREYFDYITVDSAARRVYLSH
Ga0209154_12366051	3300026317	Soil	MKSYGFGRLASGMLLLTLGTFSLSMAATNGYHLLKKYSFGAAEGSTREYFDYITVDSAARRVYL
Ga0209160_10490412	3300026532	Soil	MKSSSGLGRLAPGLSIALLGAFTLAMAATSGYHLVKKYSFGAAEGSTREYF
Ga0209648_107479651	3300026551	Grasslands Soil	MKSKRFVRLAGGVVVILLGAVSLAMAAANSYHLLKKYSFGAAEGSTREYFDYVTVDSATRRVYLSH
Ga0209577_105677041	3300026552	Soil	MKSYRLGRLAGGILVILLGTFSLSMAATNGYHLLKKYSFGAAEGSTREHFDYITVDSAARRVYL
Ga0209736_10611901	3300027660	Forest Soil	MRLSSGSGRLVSGALLILMSVFGVASAATGGYHLLKKYSFGAAEGSTREYFDYIAVDSAARRVYV
Ga0209166_101313563	3300027857	Surface Soil	MKLHRFARPAGALAILLGAVSLVIAAAPGYHLLKKYPFPAAPGSTREYFDYVSVDSAARRVYVSHGTEIIVLDA
Ga0209698_101893913	3300027911	Watersheds	MKSSGLRGIASGALFILLGSFSLLTAATSGYHLLKKYNFGAAEGSTREYFDYITVDSAAR
Ga0209698_102893511	3300027911	Watersheds	MKSSGLRGIASGALLTLLSSFSLLTAATNGYHLLKKYNFGAAEGSTREYFDYITVDSAAR
Ga0307469_101187473	3300031720	Hardwood Forest Soil	VKTHSLGRLLAGALVVLLGCGSLSRAATDDYHLLKKYSFGPAEGSSREYFDYITVDSAARRV
Ga0307475_114324702	3300031754	Hardwood Forest Soil	MKGFSLGRVASVAVLILAGSSLLVAAAGYHLLKKYSFGAAEGATREYFDYVTVDSEARRVYLSHGTEVIVMDAD
Ga0318546_106420681	3300031771	Soil	MKSYDLARVASVLLLILLGSFSFLMAAPIEYHLLKKYTFGAAAGSTREYFDYITVDSAARRVY
Ga0306925_102566303	3300031890	Soil	MKSYGLARIASVLLLILLGSFSFLVAAPIEYHLLKKYTFGAAAGSPREYFDYITVDS
Ga0310916_110320422	3300031942	Soil	MNSRYIGRLAIGLSLTLLAAFPLLIAADSGYRLIKKYSFGAAEGSTREYFDYITVDSAPR
Ga0318540_101918281	3300032094	Soil	MKSYDLARVASVLLLILLGSFSFLMAAPIEYHLLKKYTFGAAAGSTREYFDYITVDSAARRVYLTHGTE
Ga0311301_109621993	3300032160	Peatlands Soil	MKAKRFARFSIGLLLLVLASLPILKAASGGYHLLKKYSFGAAEGSTREYFDYVTVDSAARRVYL
Ga0311301_125353382	3300032160	Peatlands Soil	MKLLSGFGRFITGVSLVFCGLVLAHAATEGYHLLTQYPFGAAAGSTREYFDYITVDSAARRVYLS
Ga0307470_116023881	3300032174	Hardwood Forest Soil	MKFLNFGRIERFALMARVAVLILAGCSLLVAAGNEYHLLKKYAFGAAEGSTREYFDYITMDSAARRVYLSHGTEVIVMDADSGA
Ga0307471_1024619882	3300032180	Hardwood Forest Soil	MKSHSVGRIASGVVVILLGTFSLLMAAAPGYHLMKKYSFGAAEGA
Ga0335081_119049571	3300032892	Soil	MNSRFGFARLAAMMFGIISGAFALGGSPVGGYHLLKKFSFGPAEGSTREYFDYI
Ga0326728_104667552	3300033402	Peat Soil	MNLSSGFKRLAPGVSFVLLSVFALALAATGGYHLLKKYPFGAAEGSTREYFDYITVDSSARR
Ga0326728_109207472	3300033402	Peat Soil	MKSSSALRRIAPCVALFLLASFALAIAATGGYHLLKKYPFGAAEGSTREYFDYITVDASARRVY
Ga0326727_102776301	3300033405	Peat Soil	MNSRFGFARLAAVMFYILLGSFALASSATGGYHLLKKFSFGPAEGSTREYFDYITV
Ga0310811_114729701	3300033475	Soil	MKPHSFGKFVSAVILILLGAVSLSMAATNSYHLLKKYSFGAAEGSDREYFDYITVDSAARRVYLSHGTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086732

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences